Mercurial > hg > orthanc

annotate OrthancServer/Sources/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 5676:b744a2cf408a find-refactoring tip

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shorten ParentRetrieveSpecification/ChildrenRetrieveSpecification as ParentSpecification/ChildrenSpecification
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sat, 06 Jul 2024 15:04:28 +0200
parents f7adfb22e20e
children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU General Public License as
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11 * published by the Free Software Foundation, either version 3 of the
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12 * License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "../PrecompiledHeadersServer.h"
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25 #include "OrthancRestApi.h"
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26
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27 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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28 #include "../../../OrthancFramework/Sources/Logging.h"
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29 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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30 #include "../OrthancConfiguration.h"
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31 #include "../ServerContext.h"
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32 #include "../ServerJobs/MergeStudyJob.h"
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33 #include "../ServerJobs/ResourceModificationJob.h"
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34 #include "../ServerJobs/SplitStudyJob.h"
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35
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36 #include <boost/lexical_cast.hpp>
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37 #include <boost/algorithm/string/predicate.hpp>
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38
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39 #define INFO_SUBSEQUENCES \
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40 "Starting with Orthanc 1.9.4, paths to subsequences can be provided using the "\
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41 "same syntax as the `dcmodify` command-line tool (wildcards are supported as well)."
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42
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44 static const char* const CONTENT = "Content";
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45 static const char* const FORCE = "Force";
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46 static const char* const INSTANCES = "Instances";
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47 static const char* const INTERPRET_BINARY_TAGS = "InterpretBinaryTags";
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48 static const char* const KEEP = "Keep";
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49 static const char* const KEEP_PRIVATE_TAGS = "KeepPrivateTags";
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50 static const char* const KEEP_LABELS = "KeepLabels";
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51 static const char* const KEEP_SOURCE = "KeepSource";
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52 static const char* const LEVEL = "Level";
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53 static const char* const PARENT = "Parent";
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54 static const char* const PRIVATE_CREATOR = "PrivateCreator";
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55 static const char* const REMOVE = "Remove";
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56 static const char* const REPLACE = "Replace";
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57 static const char* const RESOURCES = "Resources";
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58 static const char* const SERIES = "Series";
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59 static const char* const TAGS = "Tags";
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60 static const char* const TRANSCODE = "Transcode";
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61
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62
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63 namespace Orthanc
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64 {
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65 // Modification of DICOM instances ------------------------------------------
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66
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67
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68 static std::string GeneratePatientName(ServerContext& context)
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69 {
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70 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true /* shared */);
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71 return "Anonymized" + boost::lexical_cast<std::string>(seq);
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72 }
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73
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74
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75 static void DocumentKeepSource(RestApiPostCall& call)
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76 {
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77 call.GetDocumentation()
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78 .SetRequestField(KEEP_SOURCE, RestApiCallDocumentation::Type_Boolean,
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79 "If set to `false`, instructs Orthanc to the remove original resources. "
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80 "By default, the original resources are kept in Orthanc.", false);
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81 }
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82
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83
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84 static void DocumentModifyOptions(RestApiPostCall& call)
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85 {
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86 // Check out "DicomModification::ParseModifyRequest()"
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87 call.GetDocumentation()
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88 .SetRequestField(TRANSCODE, RestApiCallDocumentation::Type_String,
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89 "Transcode the DICOM instances to the provided DICOM transfer syntax: "
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90 "https://orthanc.uclouvain.be/book/faq/transcoding.html", false)
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91 .SetRequestField(FORCE, RestApiCallDocumentation::Type_Boolean,
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92 "Allow the modification of tags related to DICOM identifiers, at the risk of "
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93 "breaking the DICOM model of the real world", false)
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94 .SetRequestField("RemovePrivateTags", RestApiCallDocumentation::Type_Boolean,
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95 "Remove the private tags from the DICOM instances (defaults to `false`)", false)
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96 .SetRequestField(REPLACE, RestApiCallDocumentation::Type_JsonObject,
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97 "Associative array to change the value of some DICOM tags in the DICOM instances. " INFO_SUBSEQUENCES, false)
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98 .SetRequestField(REMOVE, RestApiCallDocumentation::Type_JsonListOfStrings,
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99 "List of tags that must be removed from the DICOM instances. " INFO_SUBSEQUENCES, false)
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100 .SetRequestField(KEEP, RestApiCallDocumentation::Type_JsonListOfStrings,
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101 "Keep the original value of the specified tags, to be chosen among the `StudyInstanceUID`, "
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102 "`SeriesInstanceUID` and `SOPInstanceUID` tags. Avoid this feature as much as possible, "
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103 "as this breaks the DICOM model of the real world.", false)
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104 .SetRequestField(PRIVATE_CREATOR, RestApiCallDocumentation::Type_String,
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105 "The private creator to be used for private tags in `Replace`", false);
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106
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107 // This was existing, but undocumented in Orthanc <= 1.9.6
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108 DocumentKeepSource(call);
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109 }
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110
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111
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112 static void DocumentAnonymizationOptions(RestApiPostCall& call)
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113 {
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114 // Check out "DicomModification::ParseAnonymizationRequest()"
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115 call.GetDocumentation()
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116 .SetRequestField(TRANSCODE, RestApiCallDocumentation::Type_String,
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117 "Transcode the DICOM instances to the provided DICOM transfer syntax: "
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118 "https://orthanc.uclouvain.be/book/faq/transcoding.html", false)
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119 .SetRequestField(FORCE, RestApiCallDocumentation::Type_Boolean,
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120 "Allow the modification of tags related to DICOM identifiers, at the risk of "
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121 "breaking the DICOM model of the real world", false)
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122 .SetRequestField("DicomVersion", RestApiCallDocumentation::Type_String,
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123 "Version of the DICOM standard to be used for anonymization. Check out "
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124 "configuration option `DeidentifyLogsDicomVersion` for possible values.", false)
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125 .SetRequestField(KEEP_PRIVATE_TAGS, RestApiCallDocumentation::Type_Boolean,
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126 "Keep the private tags from the DICOM instances (defaults to `false`)", false)
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127 .SetRequestField(KEEP_LABELS, RestApiCallDocumentation::Type_Boolean,
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128 "Keep the labels of all resources level (defaults to `false`)", false)
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129 .SetRequestField(REPLACE, RestApiCallDocumentation::Type_JsonObject,
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130 "Associative array to change the value of some DICOM tags in the DICOM instances. " INFO_SUBSEQUENCES, false)
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131 .SetRequestField(REMOVE, RestApiCallDocumentation::Type_JsonListOfStrings,
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132 "List of additional tags to be removed from the DICOM instances. " INFO_SUBSEQUENCES, false)
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133 .SetRequestField(KEEP, RestApiCallDocumentation::Type_JsonListOfStrings,
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134 "List of DICOM tags whose value must not be destroyed by the anonymization. " INFO_SUBSEQUENCES, false)
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135 .SetRequestField(PRIVATE_CREATOR, RestApiCallDocumentation::Type_String,
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136 "The private creator to be used for private tags in `Replace`", false);
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137
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138 // This was existing, but undocumented in Orthanc <= 1.9.6
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139 DocumentKeepSource(call);
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140 }
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141
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142
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143 static void ParseModifyRequest(Json::Value& request,
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144 DicomModification& target,
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145 const RestApiPostCall& call)
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146 {
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147 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"},"Priority":9}'
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148
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149 {
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150 OrthancConfiguration::ReaderLock lock;
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151 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator());
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152 }
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153
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154 if (call.ParseJsonRequest(request))
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155 {
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156 target.ParseModifyRequest(request);
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157 }
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158 else
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159 {
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160 throw OrthancException(ErrorCode_BadFileFormat);
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161 }
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162 }
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163
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164
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165 static void ParseAnonymizationRequest(Json::Value& request,
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166 DicomModification& target,
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167 RestApiPostCall& call)
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168 {
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169 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm
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170
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diff changeset
171 {
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diff changeset
172 OrthancConfiguration::ReaderLock lock;
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173 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator());
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diff changeset
174 }
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
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diff changeset
175
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176 if (call.ParseJsonRequest(request) &&
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diff changeset
177 request.isObject())
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178 {
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179 bool patientNameOverridden;
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180 target.ParseAnonymizationRequest(patientNameOverridden, request);
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181
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diff changeset
182 if (!patientNameOverridden)
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183 {
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diff changeset
184 // Override the random Patient's Name by one that is more
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185 // user-friendly (provided none was specified by the user)
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diff changeset
186 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true);
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187 }
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188 }
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189 else
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diff changeset
190 {
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191 throw OrthancException(ErrorCode_BadFileFormat);
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192 }
787
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parents: 782
diff changeset
193 }
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parents: 782
diff changeset
194
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diff changeset
195
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diff changeset
196 static void AnonymizeOrModifyInstance(DicomModification& modification,
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197 RestApiPostCall& call,
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198 bool transcode,
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diff changeset
199 DicomTransferSyntax targetSyntax)
751
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parents:
diff changeset
200 {
3901
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diff changeset
201 ServerContext& context = OrthancRestApi::GetContext(call);
778
aebf0071020e refactoring of the mutex for the dicom cache
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202 std::string id = call.GetUriComponent("id", "");
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parents:
diff changeset
203
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diff changeset
204 std::unique_ptr<ParsedDicomFile> modified;
778
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diff changeset
205
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diff changeset
206 {
3901
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diff changeset
207 ServerContext::DicomCacheLocker locker(context, id);
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diff changeset
208 modified.reset(locker.GetDicom().Clone(true));
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diff changeset
209 }
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diff changeset
210
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diff changeset
211 modification.Apply(*modified);
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212
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diff changeset
213 if (transcode)
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diff changeset
214 {
3945
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diff changeset
215 IDicomTranscoder::DicomImage source;
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216 source.AcquireParsed(*modified); // "modified" is invalid below this point
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diff changeset
217
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diff changeset
218 IDicomTranscoder::DicomImage transcoded;
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diff changeset
219
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diff changeset
220 std::set<DicomTransferSyntax> s;
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diff changeset
221 s.insert(targetSyntax);
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parents: 3943
diff changeset
222
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diff changeset
223 if (context.Transcode(transcoded, source, s, true))
3901
603a7b86fa5f route "/instances/.../modify": New option "Transcode"
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diff changeset
224 {
3945
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diff changeset
225 call.GetOutput().AnswerBuffer(transcoded.GetBufferData(),
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diff changeset
226 transcoded.GetBufferSize(), MimeType_Dicom);
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diff changeset
227 }
603a7b86fa5f route "/instances/.../modify": New option "Transcode"
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diff changeset
228 else
603a7b86fa5f route "/instances/.../modify": New option "Transcode"
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diff changeset
229 {
603a7b86fa5f route "/instances/.../modify": New option "Transcode"
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diff changeset
230 throw OrthancException(ErrorCode_InternalError,
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diff changeset
231 "Cannot transcode to transfer syntax: " +
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diff changeset
232 std::string(GetTransferSyntaxUid(targetSyntax)));
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diff changeset
233 }
603a7b86fa5f route "/instances/.../modify": New option "Transcode"
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diff changeset
234 }
603a7b86fa5f route "/instances/.../modify": New option "Transcode"
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parents: 3814
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235 else
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236 {
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237 modified->Answer(call.GetOutput());
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238 }
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239 }
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240
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241
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242 static ResourceType DetectModifyLevel(const DicomModification& modification)
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243 {
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244 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID))
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245 {
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246 return ResourceType_Patient;
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247 }
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248 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
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249 {
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250 return ResourceType_Study;
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251 }
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252 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
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253 {
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254 return ResourceType_Series;
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255 }
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256 else
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257 {
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258 return ResourceType_Instance;
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259 }
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260 }
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261
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262
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263 static void ModifyInstance(RestApiPostCall& call)
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264 {
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265 if (call.IsDocumentation())
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266 {
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267 DocumentModifyOptions(call);
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268 call.GetDocumentation()
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269 .SetTag("Instances")
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270 .SetSummary("Modify instance")
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271 .SetDescription("Download a modified version of the DICOM instance whose Orthanc identifier is provided in the URL: "
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272 "https://orthanc.uclouvain.be/book/users/anonymization.html#modification-of-a-single-instance")
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273 .SetUriArgument("id", "Orthanc identifier of the instance of interest")
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274 .AddAnswerType(MimeType_Dicom, "The modified DICOM instance");
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275 return;
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276 }
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277
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278 DicomModification modification;
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279 modification.SetAllowManualIdentifiers(true);
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280
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281 Json::Value request;
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282 ParseModifyRequest(request, modification, call);
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283
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284 modification.SetLevel(DetectModifyLevel(modification));
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285
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286 if (request.isMember(TRANSCODE))
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287 {
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288 std::string s = SerializationToolbox::ReadString(request, TRANSCODE);
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289
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290 DicomTransferSyntax syntax;
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291 if (LookupTransferSyntax(syntax, s))
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292 {
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293 AnonymizeOrModifyInstance(modification, call, true, syntax);
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294 }
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295 else
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296 {
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297 throw OrthancException(ErrorCode_ParameterOutOfRange, "Unknown transfer syntax: " + s);
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298 }
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299 }
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300 else
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301 {
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302 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */,
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303 DicomTransferSyntax_LittleEndianImplicit /* unused */);
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304 }
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305 }
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306
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307
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308 static void AnonymizeInstance(RestApiPostCall& call)
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309 {
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310 if (call.IsDocumentation())
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311 {
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312 DocumentAnonymizationOptions(call);
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313 call.GetDocumentation()
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314 .SetTag("Instances")
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315 .SetSummary("Anonymize instance")
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316 .SetDescription("Download an anonymized version of the DICOM instance whose Orthanc identifier is provided in the URL: "
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317 "https://orthanc.uclouvain.be/book/users/anonymization.html#anonymization-of-a-single-instance")
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318 .SetUriArgument("id", "Orthanc identifier of the instance of interest")
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319 .AddAnswerType(MimeType_Dicom, "The anonymized DICOM instance");
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320 return;
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321 }
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322
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323 DicomModification modification;
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324 modification.SetAllowManualIdentifiers(true);
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325
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326 Json::Value request;
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327 ParseAnonymizationRequest(request, modification, call);
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328
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329 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */,
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330 DicomTransferSyntax_LittleEndianImplicit /* unused */);
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331 }
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332
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333
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334 static void SetKeepSource(CleaningInstancesJob& job,
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335 const Json::Value& body)
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336 {
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337 if (body.isMember(KEEP_SOURCE))
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338 {
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339 job.SetKeepSource(SerializationToolbox::ReadBoolean(body, KEEP_SOURCE));
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340 }
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341 }
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342
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343 static void SetKeepSource(ThreadedSetOfInstancesJob& job,
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344 const Json::Value& body)
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345 {
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346 if (body.isMember(KEEP_SOURCE))
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347 {
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348 job.SetKeepSource(SerializationToolbox::ReadBoolean(body, KEEP_SOURCE));
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349 }
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350 }
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351
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352
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353 static void SubmitModificationJob(std::unique_ptr<DicomModification>& modification,
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354 bool isAnonymization,
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355 RestApiPostCall& call,
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356 const Json::Value& body,
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357 ResourceType outputLevel /* unused for multiple resources */,
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358 bool isSingleResource,
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359 const std::set<std::string>& resources)
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360 {
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361 ServerContext& context = OrthancRestApi::GetContext(call);
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362 unsigned int workersCount = 0;
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diff changeset
363
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364 {
f2dcdbe05884 ResourceModification jobs can now use multiple threads
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365 OrthancConfiguration::ReaderLock lock;
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366 workersCount = lock.GetConfiguration().GetJobsEngineWorkersThread("ResourceModification");
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367 }
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368
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369 std::unique_ptr<ResourceModificationJob> job(new ResourceModificationJob(context, workersCount));
3942
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370
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371 if (isSingleResource) // This notably configures the output format
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372 {
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373 job->SetSingleResourceModification(modification.release(), outputLevel, isAnonymization);
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374 }
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375 else
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376 {
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
377 job->SetMultipleResourcesModification(modification.release(), isAnonymization);
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378 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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379
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380 job->SetOrigin(call);
3942
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Sebastien Jodogne <s.jodogne@gmail.com>
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381 SetKeepSource(*job, body);
3943
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parents: 3942
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382
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383 if (body.isMember(TRANSCODE))
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parents: 3942
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384 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
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385 job->SetTranscode(SerializationToolbox::ReadString(body, TRANSCODE));
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386 }
4693
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387
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388 for (std::set<std::string>::const_iterator
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389 it = resources.begin(); it != resources.end(); ++it)
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390 {
5130
f2dcdbe05884 ResourceModification jobs can now use multiple threads
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391 std::list<std::string> instances;
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392 context.GetIndex().GetChildInstances(instances, *it);
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393 job->AddInstances(instances);
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394
f2dcdbe05884 ResourceModification jobs can now use multiple threads
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395 job->AddParentResource(*it);
4693
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396 }
5137
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Alain Mazy <am@osimis.io>
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397
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Alain Mazy <am@osimis.io>
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398 job->PerformSanityChecks();
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399
5130
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400 OrthancRestApi::GetApi(call).SubmitThreadedInstancesJob
2868
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401 (call, job.release(), true /* synchronous by default */, body);
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402 }
abce036683cd sharing code within OrthancRestAnonymizeModify
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parents: 2867
diff changeset
403
abce036683cd sharing code within OrthancRestAnonymizeModify
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parents: 2867
diff changeset
404
4693
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
405 static void SubmitModificationJob(std::unique_ptr<DicomModification>& modification,
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
406 bool isAnonymization,
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
407 RestApiPostCall& call,
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
408 const Json::Value& body,
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
409 ResourceType outputLevel)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
410 {
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
411 // This was the only flavor in Orthanc <= 1.9.3
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
412 std::set<std::string> resources;
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
413 resources.insert(call.GetUriComponent("id", ""));
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
414
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
415 SubmitModificationJob(modification, isAnonymization, call, body, outputLevel,
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
416 true /* single resource */, resources);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
417 }
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
418
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
419
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
420 static void SubmitBulkJob(std::unique_ptr<DicomModification>& modification,
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
421 bool isAnonymization,
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
422 RestApiPostCall& call,
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
423 const Json::Value& body)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
424 {
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
425 std::set<std::string> resources;
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
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parents: 4699
diff changeset
426 SerializationToolbox::ReadSetOfStrings(resources, body, RESOURCES);
4693
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parents: 4687
diff changeset
427
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
428 SubmitModificationJob(modification, isAnonymization,
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
429 call, body, ResourceType_Instance /* arbitrary value, unused */,
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
430 false /* multiple resources */, resources);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
431 }
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
432
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
433
2639
75a404e40323 simplification
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parents: 2521
diff changeset
434 template <enum ResourceType resourceType>
974
83622b0f544c refactoring
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parents: 831
diff changeset
435 static void ModifyResource(RestApiPostCall& call)
751
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parents:
diff changeset
436 {
4424
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parents: 4422
diff changeset
437 if (call.IsDocumentation())
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parents: 4422
diff changeset
438 {
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parents: 4422
diff changeset
439 OrthancRestApi::DocumentSubmitCommandsJob(call);
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parents: 4422
diff changeset
440 DocumentModifyOptions(call);
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diff changeset
441 const std::string r = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */);
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diff changeset
442 call.GetDocumentation()
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diff changeset
443 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */))
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parents: 4422
diff changeset
444 .SetSummary("Modify " + r)
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diff changeset
445 .SetDescription("Start a job that will modify all the DICOM instances within the " + r +
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parents: 4422
diff changeset
446 " whose identifier is provided in the URL. The modified DICOM instances will be "
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parents: 4422
diff changeset
447 "stored into a brand new " + r + ", whose Orthanc identifiers will be returned by the job. "
5432
59e3b6f8c5be migration to UCLouvain servers
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parents: 5348
diff changeset
448 "https://orthanc.uclouvain.be/book/users/anonymization.html#modification-of-studies-or-series")
4424
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
449 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest");
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parents: 4422
diff changeset
450 return;
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parents: 4422
diff changeset
451 }
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
452
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2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
453 std::unique_ptr<DicomModification> modification(new DicomModification);
2640
c691fcf66071 ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2639
diff changeset
454
2868
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diff changeset
455 Json::Value body;
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diff changeset
456 ParseModifyRequest(body, *modification, call);
2517
d3d306bc4b99 refactoring
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parents: 2475
diff changeset
457
2639
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parents: 2521
diff changeset
458 modification->SetLevel(resourceType);
4693
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
459
2868
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diff changeset
460 SubmitModificationJob(modification, false /* not an anonymization */,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
461 call, body, resourceType);
751
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
462 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464
4693
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diff changeset
465 // New in Orthanc 1.9.4
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
466 static void BulkModify(RestApiPostCall& call)
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
467 {
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
468 if (call.IsDocumentation())
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
469 {
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
470 OrthancRestApi::DocumentSubmitCommandsJob(call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
471 DocumentModifyOptions(call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
472 call.GetDocumentation()
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
473 .SetTag("System")
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
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diff changeset
474 .SetSummary("Modify a set of resources")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
475 .SetRequestField(RESOURCES, RestApiCallDocumentation::Type_JsonListOfStrings,
4699
facea16b055b added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
476 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true)
4766
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
477 .SetRequestField(LEVEL, RestApiCallDocumentation::Type_String,
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
478 "Level of the modification (`Patient`, `Study`, `Series` or `Instance`). If absent, "
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
479 "the level defaults to `Instance`, but is set to `Patient` if `PatientID` is modified, "
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
480 "to `Study` if `StudyInstanceUID` is modified, or to `Series` if `SeriesInstancesUID` "
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
481 "is modified. (new in Orthanc 1.9.7)", false)
4693
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diff changeset
482 .SetDescription("Start a job that will modify all the DICOM patients, studies, series or instances "
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
483 "whose identifiers are provided in the `Resources` field.")
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
484 .AddAnswerType(MimeType_Json, "The list of all the resources that have been altered by this modification");
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
485 return;
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
486 }
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
487
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
488 std::unique_ptr<DicomModification> modification(new DicomModification);
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
489
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
490 Json::Value body;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
491 ParseModifyRequest(body, *modification, call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
492
4766
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
493 if (body.isMember(LEVEL))
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
494 {
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
495 // This case was introduced in Orthanc 1.9.7
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
496 modification->SetLevel(StringToResourceType(body[LEVEL].asCString()));
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
497 }
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
498 else
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
499 {
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
500 modification->SetLevel(DetectModifyLevel(*modification));
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
501 }
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
502
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
503 SubmitBulkJob(modification, false /* not an anonymization */, call, body);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
504 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
505
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
506
2639
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
507 template <enum ResourceType resourceType>
974
83622b0f544c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
508 static void AnonymizeResource(RestApiPostCall& call)
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 {
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
510 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
511 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
512 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
513 DocumentAnonymizationOptions(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
514 const std::string r = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
515 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
516 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */))
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
517 .SetSummary("Anonymize " + r)
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
518 .SetDescription("Start a job that will anonymize all the DICOM instances within the " + r +
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
519 " whose identifier is provided in the URL. The modified DICOM instances will be "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
520 "stored into a brand new " + r + ", whose Orthanc identifiers will be returned by the job. "
5432
59e3b6f8c5be migration to UCLouvain servers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5348
diff changeset
521 "https://orthanc.uclouvain.be/book/users/anonymization.html#anonymization-of-patients-studies-or-series")
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
522 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest");
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
523 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
524 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
525
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
526 std::unique_ptr<DicomModification> modification(new DicomModification);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
527
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
528 Json::Value body;
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
529 ParseAnonymizationRequest(body, *modification, call);
2640
c691fcf66071 ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2639
diff changeset
530
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
531 SubmitModificationJob(modification, true /* anonymization */,
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
532 call, body, resourceType);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
533 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
534
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
535
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
536 // New in Orthanc 1.9.4
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
537 static void BulkAnonymize(RestApiPostCall& call)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
538 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
539 if (call.IsDocumentation())
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
540 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
541 OrthancRestApi::DocumentSubmitCommandsJob(call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
542 DocumentAnonymizationOptions(call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
543 call.GetDocumentation()
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
544 .SetTag("System")
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
545 .SetSummary("Anonymize a set of resources")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
546 .SetRequestField(RESOURCES, RestApiCallDocumentation::Type_JsonListOfStrings,
4699
facea16b055b added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
547 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true)
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
548 .SetDescription("Start a job that will anonymize all the DICOM patients, studies, series or instances "
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
549 "whose identifiers are provided in the `Resources` field.")
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
550 .AddAnswerType(MimeType_Json, "The list of all the resources that have been created by this anonymization");
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
551 return;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
552 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
553
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
554 std::unique_ptr<DicomModification> modification(new DicomModification);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
555
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
556 Json::Value body;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
557 ParseAnonymizationRequest(body, *modification, call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
558
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
559 SubmitBulkJob(modification, true /* anonymization */, call, body);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
560 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
561
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
562
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
563 static void StoreCreatedInstance(std::string& id /* out */,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
564 RestApiPostCall& call,
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
565 ParsedDicomFile& dicom,
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
566 bool sendAnswer)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
567 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4479
diff changeset
568 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4479
diff changeset
569 toStore->SetOrigin(DicomInstanceOrigin::FromRest(call));
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
570
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
571 ServerContext& context = OrthancRestApi::GetContext(call);
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4766
diff changeset
572 ServerContext::StoreResult result = context.Store(id, *toStore, StoreInstanceMode_Default);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
573
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4766
diff changeset
574 if (result.GetStatus() == StoreStatus_Failure)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
575 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
576 throw OrthancException(ErrorCode_CannotStoreInstance);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
577 }
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
578
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
579 if (sendAnswer)
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
580 {
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4766
diff changeset
581 OrthancRestApi::GetApi(call).AnswerStoredInstance(call, *toStore, result.GetStatus(), id);
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
582 }
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
583 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
584
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
585
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
586 static void CreateDicomV1(ParsedDicomFile& dicom,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
587 RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
588 const Json::Value& request)
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
589 {
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
590 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}'
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 796
diff changeset
591 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}'
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
592
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
593 assert(request.isObject());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
594 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
595
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
596 Json::Value::Members members = request.getMemberNames();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
597 for (size_t i = 0; i < members.size(); i++)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
598 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
599 const std::string& name = members[i];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
600 if (request[name].type() != Json::stringValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
601 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
602 throw OrthancException(ErrorCode_CreateDicomNotString);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
603 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
604
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
605 std::string value = request[name].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
606
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
607 DicomTag tag = FromDcmtkBridge::ParseTag(name);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
608 if (tag == DICOM_TAG_PIXEL_DATA)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
609 {
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
610 dicom.EmbedContent(value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
611 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
612 else
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
613 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
614 // This is V1, don't try and decode data URI scheme
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
615 dicom.ReplacePlainString(tag, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
616 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
617 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
618 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
619
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
620
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
621 static void InjectTags(ParsedDicomFile& dicom,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
622 const Json::Value& tags,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
623 bool decodeBinaryTags,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
624 const std::string& privateCreator,
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
625 bool force)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
626 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
627 if (tags.type() != Json::objectValue)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
628 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
629 throw OrthancException(ErrorCode_BadRequest, "Tags field is not an array");
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
630 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
631
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
632 // Inject the user-specified tags
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
633 Json::Value::Members members = tags.getMemberNames();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
634 for (size_t i = 0; i < members.size(); i++)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
635 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
636 const std::string& name = members[i];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
637 DicomTag tag = FromDcmtkBridge::ParseTag(name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
638
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
639 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
640 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
641 if (!force &&
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
642 tag != DICOM_TAG_PATIENT_ID &&
1640
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
643 tag != DICOM_TAG_ACQUISITION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
644 tag != DICOM_TAG_ACQUISITION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
645 tag != DICOM_TAG_CONTENT_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
646 tag != DICOM_TAG_CONTENT_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
647 tag != DICOM_TAG_INSTANCE_CREATION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
648 tag != DICOM_TAG_INSTANCE_CREATION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
649 tag != DICOM_TAG_SERIES_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
650 tag != DICOM_TAG_SERIES_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
651 tag != DICOM_TAG_STUDY_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
652 tag != DICOM_TAG_STUDY_TIME &&
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
653 dicom.HasTag(tag))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
654 {
2952
4ceb9bf7b00c added details string in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2936
diff changeset
655 throw OrthancException(ErrorCode_CreateDicomOverrideTag, name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
656 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
657
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
658 if (tag == DICOM_TAG_PIXEL_DATA)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
659 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
660 throw OrthancException(ErrorCode_CreateDicomUseContent);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
661 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
662 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
663 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
664 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent, privateCreator);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
665 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
666 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
667 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
668 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
669
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
670
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
671 static void CreateSeries(RestApiPostCall& call,
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
672 ParsedDicomFile& base /* in */,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
673 const Json::Value& content,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
674 bool decodeBinaryTags,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
675 const std::string& privateCreator,
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
676 bool force)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
677 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
678 assert(content.isArray());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
679 assert(content.size() > 0);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
680 ServerContext& context = OrthancRestApi::GetContext(call);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
681
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
682 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
683 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1");
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
684
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
685 std::string someInstance;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
686
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
687 try
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
688 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
689 for (Json::ArrayIndex i = 0; i < content.size(); i++)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
690 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
691 std::unique_ptr<ParsedDicomFile> dicom(base.Clone(false));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
692 const Json::Value* payload = NULL;
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
693
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
694 if (content[i].type() == Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
695 {
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
696 payload = &content[i];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
697 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
698 else if (content[i].type() == Json::objectValue)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
699 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
700 if (!content[i].isMember(CONTENT))
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
701 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
702 throw OrthancException(ErrorCode_CreateDicomNoPayload);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
703 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
704
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
705 payload = &content[i][CONTENT];
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
706
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
707 if (content[i].isMember(TAGS))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
708 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
709 InjectTags(*dicom, content[i][TAGS], decodeBinaryTags, privateCreator, force);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
710 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
711 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
712
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
713 if (payload == NULL ||
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
714 payload->type() != Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
715 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
716 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
717 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
718
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
719 dicom->EmbedContent(payload->asString());
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
720 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
721 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
722
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
723 StoreCreatedInstance(someInstance, call, *dicom, false);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
724 }
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
725 }
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
726 catch (OrthancException&)
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
727 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
728 // Error: Remove the newly-created series
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
729
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
730 std::string series;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
731 if (context.GetIndex().LookupParent(series, someInstance))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
732 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
733 Json::Value dummy;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
734 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
735 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
736
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
737 throw;
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
738 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
739
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
740 std::string series;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
741 if (context.GetIndex().LookupParent(series, someInstance))
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
742 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
743 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
744 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
745 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
746
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
747
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
748 static void CreateDicomV2(RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
749 const Json::Value& request)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
750 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
751 static const char* const SPECIFIC_CHARACTER_SET_2 = "SpecificCharacterSet";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
752 static const char* const TYPE = "Type";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
753 static const char* const VALUE = "Value";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
754
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
755 assert(request.isObject());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
756 ServerContext& context = OrthancRestApi::GetContext(call);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
757
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
758 if (!request.isMember(TAGS) ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
759 request[TAGS].type() != Json::objectValue)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
760 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
761 throw OrthancException(ErrorCode_BadRequest);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
762 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
763
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
764 ParsedDicomFile dicom(true);
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
765
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
766 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
767 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
768
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
769 if (request[TAGS].isMember(SPECIFIC_CHARACTER_SET_2))
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
770 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
771 const char* tmp = request[TAGS][SPECIFIC_CHARACTER_SET_2].asCString();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
772 if (!GetDicomEncoding(encoding, tmp))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
773 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
774 throw OrthancException(ErrorCode_ParameterOutOfRange,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
775 "Unknown specific character set: " + std::string(tmp));
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
776 }
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
777 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
778 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
779 {
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2361
diff changeset
780 encoding = GetDefaultDicomEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
781 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
782
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
783 dicom.SetEncoding(encoding);
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
784 }
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
785
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
786 ResourceType parentType = ResourceType_Instance;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
787
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
788 if (request.isMember(PARENT))
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
789 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
790 // Locate the parent tags
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
791 std::string parent = request[PARENT].asString();
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
792 if (!context.GetIndex().LookupResourceType(parentType, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
793 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
794 throw OrthancException(ErrorCode_CreateDicomBadParent);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
795 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
796
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
797 if (parentType == ResourceType_Instance)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
798 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
799 throw OrthancException(ErrorCode_CreateDicomParentIsInstance);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
800 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
801
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
802 // Select one existing child instance of the parent resource, to
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
803 // retrieve all its tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
804 Json::Value siblingTags;
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
805 std::string siblingInstanceId;
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
806
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
807 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
808 // Retrieve all the instances of the parent resource
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
809 std::list<std::string> siblingInstances;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
810 context.GetIndex().GetChildInstances(siblingInstances, parent);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
811
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
812 if (siblingInstances.empty())
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
813 {
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
814 // Error: No instance (should never happen)
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
815 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
816 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
817
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
818 siblingInstanceId = siblingInstances.front();
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
819 context.ReadDicomAsJson(siblingTags, siblingInstanceId);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
820 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
821
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
822
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
823 // Choose the same encoding as the parent resource
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
824 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
825 static const char* const SPECIFIC_CHARACTER_SET = "0008,0005";
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
826
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
827 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
828 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
829 Encoding encoding;
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
830
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
831 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember(VALUE) ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
832 siblingTags[SPECIFIC_CHARACTER_SET][VALUE].type() != Json::stringValue ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
833 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET][VALUE].asCString()))
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
834 {
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
835 LOG(WARNING) << "Instance with an incorrect Specific Character Set, "
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
836 << "using the default Orthanc encoding: " << siblingInstanceId;
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
837 encoding = GetDefaultDicomEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
838 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
839
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
840 dicom.SetEncoding(encoding);
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
841 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
842 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
843
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
844
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
845 // Retrieve the tags for all the parent modules
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
846 typedef std::set<DicomTag> ModuleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
847 ModuleTags moduleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
848
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
849 ResourceType type = parentType;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
850 for (;;)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
851 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
852 DicomTag::AddTagsForModule(moduleTags, GetModule(type));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
853
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
854 if (type == ResourceType_Patient)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
855 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
856 break; // We're done
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
857 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
858
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
859 // Go up
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
860 std::string tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
861 if (!context.GetIndex().LookupParent(tmp, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
862 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
863 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
864 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
865
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
866 parent = tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
867 type = GetParentResourceType(type);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
868 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
869
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
870 for (ModuleTags::const_iterator it = moduleTags.begin();
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
871 it != moduleTags.end(); ++it)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
872 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
873 std::string t = it->Format();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
874 if (siblingTags.isMember(t))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
875 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
876 const Json::Value& tag = siblingTags[t];
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
877 if (tag[TYPE] == "Null")
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
878 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
879 dicom.ReplacePlainString(*it, "");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
880 }
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
881 else if (tag[TYPE] == "String")
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
882 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
883 std::string value = tag[VALUE].asString(); // This is an UTF-8 value (as it comes from JSON)
3441
6cc72ebfd6ef Fix issue #141 (/tools/create-dicom removes non-ASCII characters from study description)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
884 dicom.ReplacePlainString(*it, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
885 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
886 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
887 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
888 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
889
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
890
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
891 bool decodeBinaryTags = true;
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
892 if (request.isMember(INTERPRET_BINARY_TAGS))
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
893 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
894 const Json::Value& v = request[INTERPRET_BINARY_TAGS];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
895 if (v.type() != Json::booleanValue)
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
896 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
897 throw OrthancException(ErrorCode_BadRequest);
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
898 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
899
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
900 decodeBinaryTags = v.asBool();
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
901 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
902
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
903
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
904 // New argument in Orthanc 1.6.0
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
905 std::string privateCreator;
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
906 if (request.isMember(PRIVATE_CREATOR))
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
907 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
908 const Json::Value& v = request[PRIVATE_CREATOR];
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
909 if (v.type() != Json::stringValue)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
910 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
911 throw OrthancException(ErrorCode_BadRequest);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
912 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
913
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
914 privateCreator = v.asString();
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
915 }
3709
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
916 else
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
917 {
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
918 OrthancConfiguration::ReaderLock lock;
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
919 privateCreator = lock.GetConfiguration().GetDefaultPrivateCreator();
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
920 }
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
921
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
922
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
923 // New in Orthanc 1.9.0
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
924 bool force = false;
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
925 if (request.isMember(FORCE))
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
926 {
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
927 const Json::Value& v = request[FORCE];
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
928 if (v.type() != Json::booleanValue)
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
929 {
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
930 throw OrthancException(ErrorCode_BadRequest);
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
931 }
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
932
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
933 force = v.asBool();
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
934 }
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
935
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
936
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
937 // Inject time-related information
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
938 std::string date, time;
2475
8cc3ca64a534 Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
939 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
940 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
941 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
942 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
943 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
944 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
945 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
946
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
947 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
948 parentType == ResourceType_Study ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
949 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
950 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
951 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
952 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
953 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
954
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
955 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
956 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
957 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
958 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
959 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
960 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
961
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
962
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
963 InjectTags(dicom, request[TAGS], decodeBinaryTags, privateCreator, force);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
964
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
965
5348
303e930fff0f "/tools/create-dicom" can now be used to create Encapsulated 3D Manufacturing Model IODs (MTL, OBJ, or STL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
966 // Inject the content (either an image, a PDF file, or a STL/OBJ/MTL file)
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
967 if (request.isMember(CONTENT))
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
968 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
969 const Json::Value& content = request[CONTENT];
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
970
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
971 if (content.type() == Json::stringValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
972 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
973 dicom.EmbedContent(request[CONTENT].asString());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
974
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
975 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
976 else if (content.type() == Json::arrayValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
977 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
978 if (content.size() > 0)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
979 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
980 // Let's create a series instead of a single instance
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
981 CreateSeries(call, dicom, content, decodeBinaryTags, privateCreator, force);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
982 return;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
983 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
984 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
985 else
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
986 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
987 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
988 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
989 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
990
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
991 std::string id;
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
992 StoreCreatedInstance(id, call, dicom, true);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
993 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
994
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
995
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
996 static void CreateDicom(RestApiPostCall& call)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
997 {
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
998 if (call.IsDocumentation())
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
999 {
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1000 call.GetDocumentation()
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1001 .SetTag("System")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1002 .SetSummary("Create one DICOM instance")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1003 .SetDescription("Create one DICOM instance, and store it into Orthanc")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1004 .SetRequestField(TAGS, RestApiCallDocumentation::Type_JsonObject,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1005 "Associative array containing the tags of the new instance to be created", true)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1006 .SetRequestField(CONTENT, RestApiCallDocumentation::Type_String,
5348
303e930fff0f "/tools/create-dicom" can now be used to create Encapsulated 3D Manufacturing Model IODs (MTL, OBJ, or STL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
1007 "This field can be used to embed an image (pixel data encoded as PNG or JPEG), a PDF, or a "
303e930fff0f "/tools/create-dicom" can now be used to create Encapsulated 3D Manufacturing Model IODs (MTL, OBJ, or STL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
1008 "3D manufactoring model (MTL/OBJ/STL) inside the created DICOM instance. "
303e930fff0f "/tools/create-dicom" can now be used to create Encapsulated 3D Manufacturing Model IODs (MTL, OBJ, or STL)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
1009 "The file to be encapsulated must be provided using its "
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1010 "[data URI scheme encoding](https://en.wikipedia.org/wiki/Data_URI_scheme). "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1011 "This field can possibly contain a JSON array, in which case a DICOM series is created "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1012 "containing one DICOM instance for each item in the `Content` field.", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1013 .SetRequestField(PARENT, RestApiCallDocumentation::Type_String,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1014 "If present, the newly created instance will be attached to the parent DICOM resource "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1015 "whose Orthanc identifier is contained in this field. The DICOM tags of the parent "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1016 "modules in the DICOM hierarchy will be automatically copied to the newly created instance.", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1017 .SetRequestField(INTERPRET_BINARY_TAGS, RestApiCallDocumentation::Type_Boolean,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1018 "If some value in the `Tags` associative array is formatted according to some "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1019 "[data URI scheme encoding](https://en.wikipedia.org/wiki/Data_URI_scheme), "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1020 "whether this value is decoded to a binary value or kept as such (`true` by default)", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1021 .SetRequestField(PRIVATE_CREATOR, RestApiCallDocumentation::Type_String,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1022 "The private creator to be used for private tags in `Tags`", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1023 .SetRequestField(FORCE, RestApiCallDocumentation::Type_Boolean,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1024 "Avoid the consistency checks for the DICOM tags that enforce the DICOM model of the real-world. "
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1025 "You can notably use this flag if you need to manually set the tags `StudyInstanceUID`, "
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1026 "`SeriesInstanceUID`, or `SOPInstanceUID`. Be careful with this feature.", false)
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1027 .SetAnswerField("ID", RestApiCallDocumentation::Type_String, "Orthanc identifier of the newly created instance")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1028 .SetAnswerField("Path", RestApiCallDocumentation::Type_String, "Path to access the instance in the REST API");
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1029 return;
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1030 }
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1031
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1032 Json::Value request;
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1033 if (!call.ParseJsonRequest(request) ||
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1034 !request.isObject())
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1035 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1036 throw OrthancException(ErrorCode_BadRequest);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1037 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1038
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1039 if (request.isMember(TAGS))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1040 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1041 CreateDicomV2(call, request);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1042 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1043 else
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1044 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1045 // Compatibility with Orthanc <= 0.9.3
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
1046 ParsedDicomFile dicom(true);
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
1047 CreateDicomV1(dicom, call, request);
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1048
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1049 std::string id;
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
1050 StoreCreatedInstance(id, call, dicom, true);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1051 }
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1052 }
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1053
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1054
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1055 static void SplitStudy(RestApiPostCall& call)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1056 {
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1057 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1058 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1059 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1060 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1061 .SetTag("Studies")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1062 .SetSummary("Split study")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1063 .SetDescription("Start a new job so as to split the DICOM study whose Orthanc identifier is provided in the URL, "
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1064 "by taking some of its children series or instances out of it and putting them into a brand new study "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1065 "(this new study is created by setting the `StudyInstanceUID` tag to a random identifier): "
5432
59e3b6f8c5be migration to UCLouvain servers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5348
diff changeset
1066 "https://orthanc.uclouvain.be/book/users/anonymization.html#splitting")
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1067 .SetUriArgument("id", "Orthanc identifier of the study of interest")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1068 .SetRequestField(SERIES, RestApiCallDocumentation::Type_JsonListOfStrings,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1069 "The list of series to be separated from the parent study. "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1070 "These series must all be children of the same source study, that is specified in the URI.", false)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1071 .SetRequestField(REPLACE, RestApiCallDocumentation::Type_JsonObject,
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1072 "Associative array to change the value of some DICOM tags in the new study. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1073 "These tags must be part of the \"Patient Module Attributes\" or the \"General Study "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1074 "Module Attributes\", as specified by the DICOM 2011 standard in Tables C.7-1 and C.7-3.", false)
5495
4b3f5986eca1 Added a 'KeepLabels' option in /modify routes (default = false)
Alain Mazy <am@osimis.io>
parents: 5485
diff changeset
1075 .SetRequestField(KEEP_LABELS, RestApiCallDocumentation::Type_Boolean,
4b3f5986eca1 Added a 'KeepLabels' option in /modify routes (default = false)
Alain Mazy <am@osimis.io>
parents: 5485
diff changeset
1076 "Keep the labels of all resources level (defaults to `false`)", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1077 .SetRequestField(REMOVE, RestApiCallDocumentation::Type_JsonListOfStrings,
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1078 "List of tags that must be removed in the new study (from the same modules as in the `Replace` option)", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1079 .SetRequestField(KEEP_SOURCE, RestApiCallDocumentation::Type_Boolean,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1080 "If set to `true`, instructs Orthanc to keep a copy of the original series/instances in the source study. "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1081 "By default, the original series/instances are deleted from Orthanc.", false)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1082 .SetRequestField(INSTANCES, RestApiCallDocumentation::Type_JsonListOfStrings,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1083 "The list of instances to be separated from the parent study. "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1084 "These instances must all be children of the same source study, that is specified in the URI.", false);
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1085 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1086 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1087
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1088 ServerContext& context = OrthancRestApi::GetContext(call);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1089
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1090 Json::Value request;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1091 if (!call.ParseJsonRequest(request))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1092 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1093 // Bad JSON request
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1094 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1095 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1096
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1097 const std::string study = call.GetUriComponent("id", "");
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1098
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
1099 std::unique_ptr<SplitStudyJob> job(new SplitStudyJob(context, study));
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1100 job->SetOrigin(call);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1101
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1102 bool ok = false;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1103 if (request.isMember(SERIES))
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1104 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1105 std::vector<std::string> series;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1106 SerializationToolbox::ReadArrayOfStrings(series, request, SERIES);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1107
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1108 for (size_t i = 0; i < series.size(); i++)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1109 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1110 job->AddSourceSeries(series[i]);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1111 ok = true;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1112 }
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1113 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1114
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1115 if (request.isMember(INSTANCES))
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1116 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1117 std::vector<std::string> instances;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1118 SerializationToolbox::ReadArrayOfStrings(instances, request, INSTANCES);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1119
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1120 for (size_t i = 0; i < instances.size(); i++)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1121 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1122 job->AddSourceInstance(instances[i]);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1123 ok = true;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1124 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1125 }
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1126
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1127 if (!ok)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1128 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1129 throw OrthancException(ErrorCode_BadRequest, "Both the \"Series\" and the \"Instances\" fields are missing");
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1130 }
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1131
2860
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1132 job->AddTrailingStep();
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1133
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1134 SetKeepSource(*job, request);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1135
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1136 if (request.isMember(REMOVE))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1137 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1138 if (request[REMOVE].type() != Json::arrayValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1139 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1140 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1141 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1142
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1143 for (Json::Value::ArrayIndex i = 0; i < request[REMOVE].size(); i++)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1144 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1145 if (request[REMOVE][i].type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1146 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1147 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1148 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1149 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1150 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1151 job->Remove(FromDcmtkBridge::ParseTag(request[REMOVE][i].asCString()));
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1152 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1153 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1154 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1155
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1156 if (request.isMember(REPLACE))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1157 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1158 if (request[REPLACE].type() != Json::objectValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1159 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1160 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1161 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1162
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1163 Json::Value::Members tags = request[REPLACE].getMemberNames();
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1164
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1165 for (size_t i = 0; i < tags.size(); i++)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1166 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1167 const Json::Value& value = request[REPLACE][tags[i]];
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1168
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1169 if (value.type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1170 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1171 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1172 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1173 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1174 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1175 job->Replace(FromDcmtkBridge::ParseTag(tags[i]), value.asString());
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1176 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1177 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1178 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1179
2869
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1180 OrthancRestApi::GetApi(call).SubmitCommandsJob
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1181 (call, job.release(), true /* synchronous by default */, request);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1182 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1183
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1184
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1185 static void MergeStudy(RestApiPostCall& call)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1186 {
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1187 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1188 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1189 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1190 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1191 .SetTag("Studies")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1192 .SetSummary("Merge study")
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4712
diff changeset
1193 .SetDescription("Start a new job so as to move some DICOM resources into the DICOM study whose Orthanc identifier "
5432
59e3b6f8c5be migration to UCLouvain servers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5348
diff changeset
1194 "is provided in the URL: https://orthanc.uclouvain.be/book/users/anonymization.html#merging")
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1195 .SetUriArgument("id", "Orthanc identifier of the study of interest")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1196 .SetRequestField(RESOURCES, RestApiCallDocumentation::Type_JsonListOfStrings,
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4712
diff changeset
1197 "The list of DICOM resources (studies, series, and/or instances) to be merged "
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1198 "into the study of interest (mandatory option)", true)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1199 .SetRequestField(KEEP_SOURCE, RestApiCallDocumentation::Type_Boolean,
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1200 "If set to `true`, instructs Orthanc to keep a copy of the original resources in their source study. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1201 "By default, the original resources are deleted from Orthanc.", false);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1202 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1203 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1204
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1205 ServerContext& context = OrthancRestApi::GetContext(call);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1206
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1207 Json::Value request;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1208 if (!call.ParseJsonRequest(request))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1209 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1210 // Bad JSON request
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1211 throw OrthancException(ErrorCode_BadFileFormat);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1212 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1213
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1214 const std::string study = call.GetUriComponent("id", "");
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1215
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
1216 std::unique_ptr<MergeStudyJob> job(new MergeStudyJob(context, study));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1217 job->SetOrigin(call);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1218
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1219 std::vector<std::string> resources;
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1220 SerializationToolbox::ReadArrayOfStrings(resources, request, RESOURCES);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1221
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1222 for (size_t i = 0; i < resources.size(); i++)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1223 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1224 job->AddSource(resources[i]);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1225 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1226
2860
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1227 job->AddTrailingStep();
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1228
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1229 SetKeepSource(*job, request);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1230
2869
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1231 OrthancRestApi::GetApi(call).SubmitCommandsJob
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1232 (call, job.release(), true /* synchronous by default */, request);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1233 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1234
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1235
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1236 void OrthancRestApi::RegisterAnonymizeModify()
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1237 {
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1238 Register("/instances/{id}/modify", ModifyInstance);
2639
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1239 Register("/series/{id}/modify", ModifyResource<ResourceType_Series>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1240 Register("/studies/{id}/modify", ModifyResource<ResourceType_Study>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1241 Register("/patients/{id}/modify", ModifyResource<ResourceType_Patient>);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1242 Register("/tools/bulk-modify", BulkModify);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1243
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1244 Register("/instances/{id}/anonymize", AnonymizeInstance);
2639
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1245 Register("/series/{id}/anonymize", AnonymizeResource<ResourceType_Series>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1246 Register("/studies/{id}/anonymize", AnonymizeResource<ResourceType_Study>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1247 Register("/patients/{id}/anonymize", AnonymizeResource<ResourceType_Patient>);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1248 Register("/tools/bulk-anonymize", BulkAnonymize);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1249
1120
009dce4ea2f6 /tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1010
diff changeset
1250 Register("/tools/create-dicom", CreateDicom);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1251
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1252 Register("/studies/{id}/split", SplitStudy);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1253 Register("/studies/{id}/merge", MergeStudy);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1254 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1255 }