Mercurial > hg > orthanc
annotate OrthancServer/Resources/Samples/ImportDicomFiles/ImportDicomFiles.py @ 5760:29af9fc796d2 large-queries tip
closing large-queries branch
author | Alain Mazy <am@orthanc.team> |
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date | Thu, 05 Sep 2024 18:57:15 +0200 |
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1 #!/usr/bin/env python3 |
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2 |
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3 # Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 4 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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5 # Department, University Hospital of Liege, Belgium |
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6 # Copyright (C) 2017-2023 Osimis S.A., Belgium |
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7 # Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
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8 # Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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9 # |
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10 # This program is free software: you can redistribute it and/or |
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11 # modify it under the terms of the GNU General Public License as |
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12 # published by the Free Software Foundation, either version 3 of the |
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13 # License, or (at your option) any later version. |
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14 # |
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15 # This program is distributed in the hope that it will be useful, but |
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16 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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17 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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18 # General Public License for more details. |
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19 # |
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20 # You should have received a copy of the GNU General Public License |
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21 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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22 |
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23 |
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24 import base64 |
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25 import httplib2 |
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26 import json |
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27 import os |
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28 import os.path |
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29 import sys |
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30 |
370 | 31 if len(sys.argv) != 4 and len(sys.argv) != 6: |
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32 print(""" |
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33 Sample script to recursively import in Orthanc all the DICOM files |
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34 that are stored in some path. Please make sure that Orthanc is running |
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35 before starting this script. The files are uploaded through the REST |
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36 API. |
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37 |
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38 Usage: %s [hostname] [HTTP port] [path] |
370 | 39 Usage: %s [hostname] [HTTP port] [path] [username] [password] |
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40 For instance: %s 127.0.0.1 8042 . |
370 | 41 """ % (sys.argv[0], sys.argv[0], sys.argv[0])) |
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42 exit(-1) |
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43 |
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44 URL = 'http://%s:%d/instances' % (sys.argv[1], int(sys.argv[2])) |
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45 |
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46 dicom_count = 0 |
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47 json_count = 0 |
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48 total_file_count = 0 |
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49 |
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50 |
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51 def IsJson(content): |
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52 try: |
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53 if (sys.version_info >= (3, 0)): |
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54 json.loads(content.decode()) |
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55 return True |
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56 else: |
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57 json.loads(content) |
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58 return True |
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59 except: |
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60 return False |
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61 |
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62 |
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63 # This function will upload a single file to Orthanc through the REST API |
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64 def UploadFile(path): |
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65 global dicom_count |
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66 global json_count |
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67 global total_file_count |
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68 |
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69 f = open(path, 'rb') |
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70 content = f.read() |
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71 f.close() |
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72 total_file_count += 1 |
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73 |
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74 sys.stdout.write('Importing %s' % path) |
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75 |
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76 if IsJson(content): |
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77 sys.stdout.write(' => ignored JSON file\n') |
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78 json_count += 1 |
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79 return |
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80 |
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81 try: |
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82 h = httplib2.Http() |
370 | 83 |
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84 headers = { 'content-type' : 'application/dicom' } |
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85 |
370 | 86 if len(sys.argv) == 6: |
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87 username = sys.argv[4] |
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88 password = sys.argv[5] |
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89 |
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90 # h.add_credentials(username, password) |
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91 |
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92 # This is a custom reimplementation of the |
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93 # "Http.add_credentials()" method for Basic HTTP Access |
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94 # Authentication (for some weird reason, this method does |
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95 # not always work) |
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96 # http://en.wikipedia.org/wiki/Basic_access_authentication |
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97 creds_str = username + ':' + password |
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98 creds_str_bytes = creds_str.encode('ascii') |
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99 creds_str_bytes_b64 = b'Basic ' + base64.b64encode(creds_str_bytes) |
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100 headers['authorization'] = creds_str_bytes_b64.decode('ascii') |
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101 |
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102 resp, content = h.request(URL, 'POST', |
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103 body = content, |
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104 headers = headers) |
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105 |
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106 if resp.status == 200: |
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107 sys.stdout.write(' => success\n') |
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108 dicom_count += 1 |
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109 else: |
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110 sys.stdout.write(' => failure (Is it a DICOM file? Is there a password?)\n') |
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111 |
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112 except: |
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113 type, value, traceback = sys.exc_info() |
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114 sys.stderr.write(str(value)) |
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115 sys.stdout.write(' => unable to connect (Is Orthanc running? Is there a password?)\n') |
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116 |
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117 |
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118 if os.path.isfile(sys.argv[3]): |
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119 # Upload a single file |
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120 UploadFile(sys.argv[3]) |
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121 else: |
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122 # Recursively upload a directory |
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123 for root, dirs, files in os.walk(sys.argv[3]): |
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124 for f in files: |
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125 UploadFile(os.path.join(root, f)) |
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126 |
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127 |
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128 if dicom_count + json_count == total_file_count: |
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129 print('\nSUCCESS: %d DICOM file(s) have been successfully imported' % dicom_count) |
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130 else: |
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131 print('\nWARNING: Only %d out of %d file(s) have been successfully imported as DICOM instance(s)' % (dicom_count, total_file_count - json_count)) |
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132 |
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133 if json_count != 0: |
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134 print('NB: %d JSON file(s) have been ignored' % json_count) |
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135 |
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136 print('') |