annotate Resources/Samples/ImportDicomFiles/ImportDicomFiles.py @ 370:22bb88181e06

credentials
author jodogne
date Tue, 12 Mar 2013 11:14:45 +0100
parents 77e526e6fdf8
children 7000726bade7
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
280
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 #!/usr/bin/python
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 import os
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 import sys
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 import os.path
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 import httplib2
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7
370
22bb88181e06 credentials
jodogne
parents: 280
diff changeset
8 if len(sys.argv) != 4 and len(sys.argv) != 6:
280
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 print("""
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 Sample script to recursively import in Orthanc all the DICOM files
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 that are stored in some path. Please make sure that Orthanc is running
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 before starting this script. The files are uploaded through the REST
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 API.
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 Usage: %s [hostname] [HTTP port] [path]
370
22bb88181e06 credentials
jodogne
parents: 280
diff changeset
16 Usage: %s [hostname] [HTTP port] [path] [username] [password]
280
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 For instance: %s localhost 8042 .
370
22bb88181e06 credentials
jodogne
parents: 280
diff changeset
18 """ % (sys.argv[0], sys.argv[0], sys.argv[0]))
280
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 exit(-1)
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 URL = 'http://%s:%d/instances' % (sys.argv[1], int(sys.argv[2]))
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 success = 0
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 # This function will upload a single file to Orthanc through the REST API
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 def UploadFile(path):
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 global success
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
370
22bb88181e06 credentials
jodogne
parents: 280
diff changeset
30 f = open(path, "rb")
280
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 content = f.read()
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 f.close()
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 try:
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 sys.stdout.write("Importing %s" % path)
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 h = httplib2.Http()
370
22bb88181e06 credentials
jodogne
parents: 280
diff changeset
38
22bb88181e06 credentials
jodogne
parents: 280
diff changeset
39 if len(sys.argv) == 6:
22bb88181e06 credentials
jodogne
parents: 280
diff changeset
40 h.add_credentials(sys.argv[4], sys.argv[5])
22bb88181e06 credentials
jodogne
parents: 280
diff changeset
41
280
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 resp, content = h.request(URL, 'POST',
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 body = content,
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 headers = { 'content-type' : 'application/dicom' })
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 if resp.status == 200:
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 sys.stdout.write(" => success\n")
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 success += 1
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 else:
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 sys.stdout.write(" => failure (is it a DICOM file?)\n")
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 except:
370
22bb88181e06 credentials
jodogne
parents: 280
diff changeset
53 sys.stdout.write(" => unable to connect (is there a password?)\n")
280
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 if os.path.isfile(sys.argv[3]):
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 # Upload a single file
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 UploadFile(sys.argv[3])
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 else:
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 # Recursively upload a directory
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 for root, dirs, files in os.walk(sys.argv[3]):
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 for f in files:
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 UploadFile(os.path.join(root, f))
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65
77e526e6fdf8 sample script to import DICOM files in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 print("\nSummary: %d DICOM file(s) have been imported" % success)