Mercurial > hg > orthanc

annotate OrthancFramework/Sources/DicomFormat/DicomMap.h @ 5676:b744a2cf408a find-refactoring tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
shorten ParentRetrieveSpecification/ChildrenRetrieveSpecification as ParentSpecification/ChildrenSpecification
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sat, 06 Jul 2024 15:04:28 +0200
parents f7adfb22e20e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
59
c996319e90bc renaming in Core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1749
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
1288
6e7e5ed91c2d upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1228
diff changeset
4 * Department, University Hospital of Liege, Belgium
5640
f7adfb22e20e updated copyright, as Orthanc Team now replaces Osimis
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5485
diff changeset
5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
f7adfb22e20e updated copyright, as Orthanc Team now replaces Osimis
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5485
diff changeset
6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
5485
48b8dae6dc77 upgrade to year 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5323
diff changeset
7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 *
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * This program is free software: you can redistribute it and/or
4119
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
10 * modify it under the terms of the GNU Lesser General Public License
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
11 * as published by the Free Software Foundation, either version 3 of
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
12 * the License, or (at your option) any later version.
136
fe180eae201d openssl exception
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 80
diff changeset
13 *
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * This program is distributed in the hope that it will be useful, but
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * WITHOUT ANY WARRANTY; without even the implied warranty of
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
4119
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
17 * Lesser General Public License for more details.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 *
4119
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
19 * You should have received a copy of the GNU Lesser General Public
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
20 * License along with this program. If not, see
bf7b9edf6b81 re-licensing the OrthancFramework to LGPL, in order to license Stone of Orthanc under LGPL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
21 * <http://www.gnu.org/licenses/>.
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 **/
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 #pragma once
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 #include "DicomTag.h"
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 #include "DicomValue.h"
562
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
29 #include "../Enumerations.h"
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30
567
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 562
diff changeset
31 #include <set>
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 #include <map>
4392
3af1d763763a confining Json::Reader and Json::*Writer into Toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4296
diff changeset
33 #include <json/value.h>
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34
59
c996319e90bc renaming in Core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 50
diff changeset
35 namespace Orthanc
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 {
3992
f9863630ec7f working on the shared library for Orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3840
diff changeset
37 class ORTHANC_PUBLIC DicomMap : public boost::noncopyable
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 {
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
39 public:
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
40 typedef std::map<DicomTag, DicomValue*> Content;
4932
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
41
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 private:
4932
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
43 class MainDicomTagsConfiguration;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 friend class DicomArray;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 friend class FromDcmtkBridge;
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2008
diff changeset
46 friend class ParsedDicomFile;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
48 Content content_;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 // Warning: This takes the ownership of "value"
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
51 void SetValueInternal(uint16_t group,
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
52 uint16_t element,
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3650
diff changeset
53 DicomValue* value);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 public:
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
56 ~DicomMap();
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57
5195
32df369198ac fix /tools/reset crashing when ExtraMainDicomTags were defined
Alain Mazy <am@osimis.io>
parents: 5185
diff changeset
58 static void ResetDefaultMainDicomTags();
32df369198ac fix /tools/reset crashing when ExtraMainDicomTags were defined
Alain Mazy <am@osimis.io>
parents: 5185
diff changeset
59
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
60 size_t GetSize() const;
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
61
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
62 DicomMap* Clone() const;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
64 void Assign(const DicomMap& other);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 void Clear();
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
68 void SetNullValue(uint16_t group,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
69 uint16_t element);
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
70
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
71 void SetNullValue(const DicomTag& tag);
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
72
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
73 void SetValue(uint16_t group,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
74 uint16_t element,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
75 const DicomValue& value);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 void SetValue(const DicomTag& tag,
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
78 const DicomValue& value);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 void SetValue(const DicomTag& tag,
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
81 const std::string& str,
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
82 bool isBinary);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
84 void SetValue(uint16_t group,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
85 uint16_t element,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
86 const std::string& str,
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
87 bool isBinary);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88
5323
138e9d0c08c1 added DicomMap::GuessPixelDataValueRepresentation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5195
diff changeset
89 void SetSequenceValue(const DicomTag& tag,
138e9d0c08c1 added DicomMap::GuessPixelDataValueRepresentation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5195
diff changeset
90 const Json::Value& value);
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
91
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
92 bool HasTag(uint16_t group, uint16_t element) const;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
94 bool HasTag(const DicomTag& tag) const;
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
95
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
96 const DicomValue& GetValue(uint16_t group, uint16_t element) const;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 const DicomValue& GetValue(const DicomTag& tag) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99
1228
e0f7014d39a4 Instances without PatientID are now allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1206
diff changeset
100 // DO NOT delete the returned value!
4296
3b70a2e6a06c moving inline methods to source files for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4119
diff changeset
101 const DicomValue* TestAndGetValue(uint16_t group, uint16_t element) const;
80
6212bf978584 status of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
102
1228
e0f7014d39a4 Instances without PatientID are now allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1206
diff changeset
103 // DO NOT delete the returned value!
80
6212bf978584 status of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
104 const DicomValue* TestAndGetValue(const DicomTag& tag) const;
6212bf978584 status of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 59
diff changeset
105
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 void Remove(const DicomTag& tag);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107
5036
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
108 void RemoveTags(const std::set<DicomTag>& tags);
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
109
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 void ExtractPatientInformation(DicomMap& result) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 void ExtractStudyInformation(DicomMap& result) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 void ExtractSeriesInformation(DicomMap& result) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 void ExtractInstanceInformation(DicomMap& result) const;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4933
diff changeset
118 void ExtractResourceInformation(DicomMap& result, ResourceType level) const;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4933
diff changeset
119
4936
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4935
diff changeset
120 void ExtractTags(DicomMap& result, const std::set<DicomTag>& tags) const;
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4935
diff changeset
121
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
122 void ExtractSequences(DicomMap& result) const;
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
123
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 static void SetupFindPatientTemplate(DicomMap& result);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126 static void SetupFindStudyTemplate(DicomMap& result);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128 static void SetupFindSeriesTemplate(DicomMap& result);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
130 static void SetupFindInstanceTemplate(DicomMap& result);
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132 void CopyTagIfExists(const DicomMap& source,
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133 const DicomTag& tag);
562
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
134
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
135 static bool IsMainDicomTag(const DicomTag& tag, ResourceType level);
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
136
f64e3838d6e1 refactoring enumerations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 398
diff changeset
137 static bool IsMainDicomTag(const DicomTag& tag);
567
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 562
diff changeset
138
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
139 static bool IsComputedTag(const DicomTag& tag, ResourceType level);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
140
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
141 static bool IsComputedTag(const DicomTag& tag);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
142
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
143 static bool HasOnlyComputedTags(const std::set<DicomTag>& tags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
144
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
145 static bool HasComputedTags(const std::set<DicomTag>& tags, ResourceType level);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
146
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
147 static bool HasComputedTags(const std::set<DicomTag>& tags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
148
5175
48005e522bd6 start fixing thread safety issues with DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5044
diff changeset
149 static void GetMainDicomTags(std::set<DicomTag>& target,
48005e522bd6 start fixing thread safety issues with DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5044
diff changeset
150 ResourceType level);
4932
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
151
4933
312c6f4da888 adding MainDicomTags signatures
Alain Mazy <am@osimis.io>
parents: 4932
diff changeset
152 // returns a string uniquely identifying the list of main dicom tags for a level
5176
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5175
diff changeset
153 static std::string GetMainDicomTagsSignature(ResourceType level);
4933
312c6f4da888 adding MainDicomTags signatures
Alain Mazy <am@osimis.io>
parents: 4932
diff changeset
154
5176
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5175
diff changeset
155 static std::string GetDefaultMainDicomTagsSignature(ResourceType level);
4933
312c6f4da888 adding MainDicomTags signatures
Alain Mazy <am@osimis.io>
parents: 4932
diff changeset
156
5176
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5175
diff changeset
157 static void GetAllMainDicomTags(std::set<DicomTag>& target);
567
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 562
diff changeset
158
4932
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
159 // adds a main dicom tag to the definition of main dicom tags for each level.
b7ce2bb6b881 refactored the list of MainDicomTags to be able to change it dynamicaly. Unit tests and Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4870
diff changeset
160 // this should be done once at startup before you use MainDicomTags methods
5040
1c08cd68250a removed the 'name' of MainDicomTags to simplify code -> DicomMap::ParseMainDicomTags has been deprecated and one should use DicomMap::FromDicomAsJson on 'full' formatted tags
Alain Mazy <am@osimis.io>
parents: 5038
diff changeset
161 static void AddMainDicomTag(const DicomTag& tag, ResourceType level);
1206
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
162
1360
0649c5aef34a DicomFindQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
163 void GetTags(std::set<DicomTag>& tags) const;
1749
99f4a05f39fa various types of constraints
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
164
3840
e7003b2203a7 fixing signature of DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3771
diff changeset
165 static bool IsDicomFile(const void* dicom,
3771
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3690
diff changeset
166 size_t size);
74889e6f6d68 fix memory issues if parsing invalid DICOM file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3690
diff changeset
167
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
168 static bool ParseDicomMetaInformation(DicomMap& result,
3840
e7003b2203a7 fixing signature of DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3771
diff changeset
169 const void* dicom,
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
170 size_t size);
2380
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
171
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
172 void LogMissingTagsForStore() const;
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
173
4501
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
174 static void LogMissingTagsForStore(const std::string& patientId,
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
175 const std::string& studyInstanceUid,
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
176 const std::string& seriesInstanceUid,
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
177 const std::string& sopInstanceUid);
11c2ddb4e2ca FromDcmtkBridge::LogMissingTagsForStore()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
178
3518
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
179 bool LookupStringValue(std::string& result,
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
180 const DicomTag& tag,
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
181 bool allowBinary) const;
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
182
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
183 bool ParseInteger32(int32_t& result,
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
184 const DicomTag& tag) const;
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
185
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
186 bool ParseInteger64(int64_t& result,
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
187 const DicomTag& tag) const;
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
188
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
189 bool ParseUnsignedInteger32(uint32_t& result,
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
190 const DicomTag& tag) const;
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
191
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
192 bool ParseUnsignedInteger64(uint64_t& result,
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
193 const DicomTag& tag) const;
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
194
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
195 bool ParseFloat(float& result,
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
196 const DicomTag& tag) const;
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
197
3690
a9ce35d67c3c implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3678
diff changeset
198 bool ParseFirstFloat(float& result,
a9ce35d67c3c implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3678
diff changeset
199 const DicomTag& tag) const;
a9ce35d67c3c implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3678
diff changeset
200
2412
cad393b41bc3 handy shortcuts in DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
201 bool ParseDouble(double& result,
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
202 const DicomTag& tag) const;
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
203
5040
1c08cd68250a removed the 'name' of MainDicomTags to simplify code -> DicomMap::ParseMainDicomTags has been deprecated and one should use DicomMap::FromDicomAsJson on 'full' formatted tags
Alain Mazy <am@osimis.io>
parents: 5038
diff changeset
204 void FromDicomAsJson(const Json::Value& dicomAsJson,
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
205 bool append = false,
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
206 bool parseSequences = false);
3006
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
207
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
208 void Merge(const DicomMap& other);
0e1755e5efd0 DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
209
3678
26c6d47467a9 DicomMap::MergeMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
210 void MergeMainDicomTags(const DicomMap& other,
26c6d47467a9 DicomMap::MergeMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
211 ResourceType level);
26c6d47467a9 DicomMap::MergeMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
212
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3006
diff changeset
213 void ExtractMainDicomTags(const DicomMap& other);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3006
diff changeset
214
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3006
diff changeset
215 bool HasOnlyMainDicomTags() const;
3005
8265a6b56100 DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2863
diff changeset
216
2863
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
217 void Serialize(Json::Value& target) const;
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
218
da12ba232119 serialization of DicomMap
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
219 void Unserialize(const Json::Value& source);
3496
109631ed3564 DicomMap::FromDicomWeb()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
220
109631ed3564 DicomMap::FromDicomWeb()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
221 void FromDicomWeb(const Json::Value& source);
3518
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
222
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
223 std::string GetStringValue(const DicomTag& tag,
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
224 const std::string& defaultValue,
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
225 bool allowBinary) const;
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
226
3551
173c7f363d8f DicomMap::RemoveBinaryTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3518
diff changeset
227 void RemoveBinaryTags();
173c7f363d8f DicomMap::RemoveBinaryTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3518
diff changeset
228
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
229 void RemoveSequences();
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5040
diff changeset
230
3650
e5811a9f8df0 removing DicomMap::LoadMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
231 void DumpMainDicomTags(Json::Value& target,
e5811a9f8df0 removing DicomMap::LoadMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
232 ResourceType level) const;
e5811a9f8df0 removing DicomMap::LoadMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
233
5323
138e9d0c08c1 added DicomMap::GuessPixelDataValueRepresentation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5195
diff changeset
234 ValueRepresentation GuessPixelDataValueRepresentation(DicomTransferSyntax transferSyntax) const;
138e9d0c08c1 added DicomMap::GuessPixelDataValueRepresentation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5195
diff changeset
235
3518
a57c8163d9ae DicomMap::GetStringValue()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3496
diff changeset
236 void Print(FILE* fp) const; // For debugging only
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 };
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
238 }