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annotate OrthancServer/Sources/Search/DatabaseLookup.cpp @ 5640:f7adfb22e20e

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updated copyright, as Orthanc Team now replaces Osimis
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 30 May 2024 21:19:57 +0200
parents 48b8dae6dc77
children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU General Public License as
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11 * published by the Free Software Foundation, either version 3 of the
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12 * License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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23
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24 #include "../PrecompiledHeadersServer.h"
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25 #include "DatabaseLookup.h"
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26
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27 #include "../ServerToolbox.h"
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28 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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29 #include "../../../OrthancFramework/Sources/DicomParsing/ToDcmtkBridge.h"
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30 #include "../../../OrthancFramework/Sources/OrthancException.h"
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31 #include "../../../OrthancFramework/Sources/Toolbox.h"
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32
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33 #include <boost/lexical_cast.hpp>
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34
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35
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36 namespace Orthanc
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37 {
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38 DatabaseLookup::~DatabaseLookup()
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39 {
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40 for (size_t i = 0; i < constraints_.size(); i++)
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41 {
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42 assert(constraints_[i] != NULL);
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43 delete constraints_[i];
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44 }
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45 }
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47
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48 const DicomTagConstraint& DatabaseLookup::GetConstraint(size_t index) const
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49 {
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50 if (index >= constraints_.size())
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51 {
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52 throw OrthancException(ErrorCode_ParameterOutOfRange);
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53 }
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54 else
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55 {
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56 assert(constraints_[index] != NULL);
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57 return *constraints_[index];
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58 }
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59 }
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60
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61
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62 void DatabaseLookup::AddConstraintInternal(DicomTagConstraint* constraint)
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63 {
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64 if (constraint == NULL)
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65 {
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66 throw OrthancException(ErrorCode_NullPointer);
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67 }
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68 else
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69 {
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70 constraints_.push_back(constraint);
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71 }
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72 }
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73
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74
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75 bool DatabaseLookup::IsMatch(const DicomMap& value) const
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76 {
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77 for (size_t i = 0; i < constraints_.size(); i++)
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78 {
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79 assert(constraints_[i] != NULL);
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80 if (!constraints_[i]->IsMatch(value))
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81 {
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82 return false;
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83 }
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84 }
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85
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86 return true;
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87 }
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88
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89
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90 bool DatabaseLookup::IsMatch(DcmItem& item,
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91 Encoding encoding,
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92 bool hasCodeExtensions) const
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93 {
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94 for (size_t i = 0; i < constraints_.size(); i++)
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95 {
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96 assert(constraints_[i] != NULL);
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97
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98 const bool isOptionalConstraint = !constraints_[i]->IsMandatory();
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99 const DcmTagKey tag = ToDcmtkBridge::Convert(constraints_[i]->GetTag());
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100
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101 DcmElement* element = NULL;
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102 if (!item.findAndGetElement(tag, element).good())
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103 {
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104 return isOptionalConstraint;
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105 }
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106
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107 if (element == NULL)
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108 {
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109 return false;
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110 }
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111
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112 std::set<DicomTag> ignoreTagLength;
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113 std::unique_ptr<DicomValue> value(FromDcmtkBridge::ConvertLeafElement
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114 (*element, DicomToJsonFlags_None,
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115 0, encoding, hasCodeExtensions, ignoreTagLength));
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116
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117 // WARNING: Also modify "HierarchicalMatcher::Setup()" if modifying this code
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118 if (value.get() == NULL ||
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119 value->IsNull())
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120 {
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121 return isOptionalConstraint;
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122 }
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123 else if (value->IsBinary() ||
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124 !constraints_[i]->IsMatch(value->GetContent()))
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125 {
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126 return false;
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127 }
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128 }
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129
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130 return true;
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131 }
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132
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133
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134 void DatabaseLookup::AddDicomConstraintInternal(const DicomTag& tag,
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135 ValueRepresentation vr,
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136 const std::string& dicomQuery,
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137 bool caseSensitive,
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138 bool mandatoryTag)
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139 {
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140 if ((vr == ValueRepresentation_Date ||
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141 vr == ValueRepresentation_DateTime ||
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142 vr == ValueRepresentation_Time) &&
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143 dicomQuery.find('-') != std::string::npos)
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144 {
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145 /**
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146 * Range matching is only defined for TM, DA and DT value
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147 * representations. This code fixes issues 35 and 37.
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148 *
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149 * Reference: "Range matching is not defined for types of
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150 * Attributes other than dates and times", DICOM PS 3.4,
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151 * C.2.2.2.5 ("Range Matching").
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152 **/
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153 size_t separator = dicomQuery.find('-');
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154 std::string lower = dicomQuery.substr(0, separator);
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155 std::string upper = dicomQuery.substr(separator + 1);
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156
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157 if (!lower.empty())
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158 {
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159 AddConstraintInternal(new DicomTagConstraint
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160 (tag, ConstraintType_GreaterOrEqual, lower, caseSensitive, mandatoryTag));
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161 }
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162
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163 if (!upper.empty())
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164 {
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165 AddConstraintInternal(new DicomTagConstraint
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166 (tag, ConstraintType_SmallerOrEqual, upper, caseSensitive, mandatoryTag));
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167 }
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168 }
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169 else if (dicomQuery.find('\\') != std::string::npos)
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170 {
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171 DicomTag fixedTag(tag);
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172
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173 std::unique_ptr<DicomTagConstraint> constraint
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174 (new DicomTagConstraint(fixedTag, ConstraintType_List, caseSensitive, mandatoryTag));
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175
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176 std::vector<std::string> items;
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177 Toolbox::TokenizeString(items, dicomQuery, '\\');
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178
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179 for (size_t i = 0; i < items.size(); i++)
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180 {
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181 constraint->AddValue(items[i]);
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182 }
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183
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184 AddConstraintInternal(constraint.release());
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185 }
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186 else if (
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187 /**
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188 * New test in Orthanc 1.6.0: Wild card matching is only allowed
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189 * for a subset of value representations: AE, CS, LO, LT, PN,
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190 * SH, ST, UC, UR, UT.
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191 * http://dicom.nema.org/medical/dicom/2019e/output/chtml/part04/sect_C.2.2.2.4.html
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192 **/
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193 (vr == ValueRepresentation_ApplicationEntity || // AE
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194 vr == ValueRepresentation_CodeString || // CS
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195 vr == ValueRepresentation_LongString || // LO
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196 vr == ValueRepresentation_LongText || // LT
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197 vr == ValueRepresentation_PersonName || // PN
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198 vr == ValueRepresentation_ShortString || // SH
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199 vr == ValueRepresentation_ShortText || // ST
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200 vr == ValueRepresentation_UnlimitedCharacters || // UC
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201 vr == ValueRepresentation_UniversalResource || // UR
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202 vr == ValueRepresentation_UnlimitedText // UT
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203 ) &&
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204 (dicomQuery.find('*') != std::string::npos ||
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205 dicomQuery.find('?') != std::string::npos))
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206 {
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207 AddConstraintInternal(new DicomTagConstraint
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208 (tag, ConstraintType_Wildcard, dicomQuery, caseSensitive, mandatoryTag));
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209 }
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210 else
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211 {
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212 AddConstraintInternal(new DicomTagConstraint
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213 (tag, ConstraintType_Equal, dicomQuery, caseSensitive, mandatoryTag));
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214 }
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215 }
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216
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217
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218 void DatabaseLookup::AddDicomConstraint(const DicomTag& tag,
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219 const std::string& dicomQuery,
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220 bool caseSensitivePN,
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221 bool mandatoryTag)
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222 {
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223 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(tag);
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224
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225 if (vr == ValueRepresentation_Sequence)
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226 {
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227 throw OrthancException(ErrorCode_ParameterOutOfRange);
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228 }
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229
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230 /**
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231 * DICOM specifies that searches must always be case sensitive,
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232 * except for tags with a PN value representation. For PN, Orthanc
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233 * uses the configuration option "CaseSensitivePN" to decide
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234 * whether matching is case-sensitive or case-insensitive.
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235 *
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236 * Reference: DICOM PS 3.4
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237 * - C.2.2.2.1 ("Single Value Matching")
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238 * - C.2.2.2.4 ("Wild Card Matching")
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239 * http://medical.nema.org/Dicom/2011/11_04pu.pdf
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240 *
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241 * "Except for Attributes with a PN Value Representation, only
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242 * entities with values which match exactly the value specified in the
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243 * request shall match. This matching is case-sensitive, i.e.,
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244 * sensitive to the exact encoding of the key attribute value in
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245 * character sets where a letter may have multiple encodings (e.g.,
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246 * based on its case, its position in a word, or whether it is
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247 * accented)
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248 *
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249 * For Attributes with a PN Value Representation (e.g., Patient Name
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250 * (0010,0010)), an application may perform literal matching that is
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251 * either case-sensitive, or that is insensitive to some or all
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252 * aspects of case, position, accent, or other character encoding
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253 * variants."
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254 *
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255 * (0008,0018) UI SOPInstanceUID => Case-sensitive
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256 * (0008,0050) SH AccessionNumber => Case-sensitive
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257 * (0010,0020) LO PatientID => Case-sensitive
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258 * (0020,000D) UI StudyInstanceUID => Case-sensitive
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259 * (0020,000E) UI SeriesInstanceUID => Case-sensitive
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260 **/
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261
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262 if (vr == ValueRepresentation_PersonName)
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263 {
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264 AddDicomConstraintInternal(tag, vr, dicomQuery, caseSensitivePN, mandatoryTag);
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265 }
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266 else
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267 {
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268 AddDicomConstraintInternal(tag, vr, dicomQuery, true /* case sensitive */, mandatoryTag);
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269 }
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270 }
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271
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272
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273 void DatabaseLookup::AddRestConstraint(const DicomTag& tag,
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274 const std::string& dicomQuery,
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275 bool caseSensitive,
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276 bool mandatoryTag)
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277 {
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278 AddDicomConstraintInternal(tag, FromDcmtkBridge::LookupValueRepresentation(tag),
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279 dicomQuery, caseSensitive, mandatoryTag);
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280 }
3033
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281
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282
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283 bool DatabaseLookup::HasOnlyMainDicomTags() const
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284 {
5176
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285 std::set<DicomTag> allMainTags;
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286 DicomMap::GetAllMainDicomTags(allMainTags);
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287
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288 for (size_t i = 0; i < constraints_.size(); i++)
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289 {
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290 assert(constraints_[i] != NULL);
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291
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292 if (allMainTags.find(constraints_[i]->GetTag()) == allMainTags.end())
3033
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293 {
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294 // This is not a main DICOM tag
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295 return false;
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296 }
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297 }
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298
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299 return true;
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300 }
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37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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301
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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302
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303 std::string DatabaseLookup::Format() const
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304 {
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305 std::string s;
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diff changeset
306
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parents: 4045
diff changeset
307 for (size_t i = 0; i < constraints_.size(); i++)
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diff changeset
308 {
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parents: 4045
diff changeset
309 assert(constraints_[i] != NULL);
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310 s += ("Contraint " + boost::lexical_cast<std::string>(i) + ": " +
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311 constraints_[i]->Format() + "\n");
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312 }
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313
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314 return s;
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315 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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316
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff changeset
317
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318 bool DatabaseLookup::HasTag(const DicomTag& tag) const
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diff changeset
319 {
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff changeset
320 for (size_t i = 0; i < constraints_.size(); i++)
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff changeset
321 {
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diff changeset
322 assert(constraints_[i] != NULL);
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff changeset
323 if (constraints_[i]->GetTag() == tag)
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diff changeset
324 {
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325 return true;
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diff changeset
326 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff changeset
327 }
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff changeset
328
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diff changeset
329 return false;
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330 }
4977
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diff changeset
331
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332 bool DatabaseLookup::GetConstraint(const DicomTagConstraint*& constraint, const DicomTag& tag) const
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diff changeset
333 {
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diff changeset
334 for (size_t i = 0; i < constraints_.size(); i++)
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diff changeset
335 {
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diff changeset
336 assert(constraints_[i] != NULL);
dad71e6da406 pre-filtering studies without ModalitiesInStudies first
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diff changeset
337 if (constraints_[i]->GetTag() == tag)
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diff changeset
338 {
4981
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diff changeset
339 constraint = constraints_[i];
4977
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340 return true;
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diff changeset
341 }
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diff changeset
342 }
dad71e6da406 pre-filtering studies without ModalitiesInStudies first
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diff changeset
343
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344 return false;
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345 }
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diff changeset
346
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parents: 4932
diff changeset
347
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diff changeset
348 void DatabaseLookup::RemoveConstraint(const DicomTag& tag)
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diff changeset
349 {
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diff changeset
350 for (size_t i = 0; i < constraints_.size(); i++)
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diff changeset
351 {
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diff changeset
352 assert(constraints_[i] != NULL);
dad71e6da406 pre-filtering studies without ModalitiesInStudies first
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diff changeset
353 if (constraints_[i]->GetTag() == tag)
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diff changeset
354 {
dad71e6da406 pre-filtering studies without ModalitiesInStudies first
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diff changeset
355 delete constraints_[i];
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Alain Mazy <am@osimis.io>
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diff changeset
356 constraints_.erase(constraints_.begin() + i);
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diff changeset
357 }
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parents: 4932
diff changeset
358 }
dad71e6da406 pre-filtering studies without ModalitiesInStudies first
Alain Mazy <am@osimis.io>
parents: 4932
diff changeset
359 }
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parents: 4932
diff changeset
360
dad71e6da406 pre-filtering studies without ModalitiesInStudies first
Alain Mazy <am@osimis.io>
parents: 4932
diff changeset
361 DatabaseLookup* DatabaseLookup::Clone() const
dad71e6da406 pre-filtering studies without ModalitiesInStudies first
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parents: 4932
diff changeset
362 {
dad71e6da406 pre-filtering studies without ModalitiesInStudies first
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diff changeset
363 std::unique_ptr<DatabaseLookup> clone(new DatabaseLookup());
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diff changeset
364
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parents: 4932
diff changeset
365 for (size_t i = 0; i < constraints_.size(); i++)
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diff changeset
366 {
4995
01934fc29d43 fix leak
Alain Mazy <am@osimis.io>
parents: 4981
diff changeset
367 clone->AddConstraintInternal(new DicomTagConstraint(*constraints_[i]));
4977
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parents: 4932
diff changeset
368 }
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diff changeset
369
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diff changeset
370 return clone.release();
dad71e6da406 pre-filtering studies without ModalitiesInStudies first
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diff changeset
371 }
5220
df39c7583a49 preparing virtual methods for labels
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parents: 5185
diff changeset
372
df39c7583a49 preparing virtual methods for labels
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parents: 5185
diff changeset
373
5248
a7d95f951f8a replaced "WithLabels" and "WithoutLabels", by "Labels" and "LabelsConstraint"
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parents: 5244
diff changeset
374 void DatabaseLookup::AddLabel(const std::string& label)
5220
df39c7583a49 preparing virtual methods for labels
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parents: 5185
diff changeset
375 {
5244
72dfa0ac84eb lookup for labels in orthanc explorer
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parents: 5220
diff changeset
376 if (!label.empty())
5220
df39c7583a49 preparing virtual methods for labels
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parents: 5185
diff changeset
377 {
5244
72dfa0ac84eb lookup for labels in orthanc explorer
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parents: 5220
diff changeset
378 ServerToolbox::CheckValidLabel(label);
5248
a7d95f951f8a replaced "WithLabels" and "WithoutLabels", by "Labels" and "LabelsConstraint"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5244
diff changeset
379 labels_.insert(label);
5220
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parents: 5185
diff changeset
380 }
df39c7583a49 preparing virtual methods for labels
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parents: 5185
diff changeset
381 }
2892
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 }