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annotate OrthancServer/Sources/Database/ResourcesContent.cpp @ 5640:f7adfb22e20e

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updated copyright, as Orthanc Team now replaces Osimis
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 30 May 2024 21:19:57 +0200
parents 48b8dae6dc77
children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU General Public License as
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11 * published by the Free Software Foundation, either version 3 of the
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12 * License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "../PrecompiledHeadersServer.h"
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25 #include "ResourcesContent.h"
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26
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27 #include "Compatibility/ISetResourcesContent.h"
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28 #include "../ServerToolbox.h"
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29
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30 #include "../../../OrthancFramework/Sources/DicomFormat/DicomArray.h"
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31 #include "../../../OrthancFramework/Sources/OrthancException.h"
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32 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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33
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34 #include <cassert>
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35
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36
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37 namespace Orthanc
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38 {
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39 static void StoreMainDicomTagsInternal(ResourcesContent& target,
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40 int64_t resource,
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41 const DicomMap& tags)
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42 {
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43 DicomArray flattened(tags);
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44
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45 for (size_t i = 0; i < flattened.GetSize(); i++)
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46 {
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47 const DicomElement& element = flattened.GetElement(i);
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48 const DicomTag& tag = element.GetTag();
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49 const DicomValue& value = element.GetValue();
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50 if (value.IsString())
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51 {
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52 target.AddMainDicomTag(resource, tag, element.GetValue().GetContent());
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53 }
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54 }
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55 }
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56
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57
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58 static void StoreIdentifiers(ResourcesContent& target,
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59 int64_t resource,
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60 ResourceType level,
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61 const DicomMap& map)
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62 {
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63 const DicomTag* tags;
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64 size_t size;
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65
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66 ServerToolbox::LoadIdentifiers(tags, size, level);
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67
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68 for (size_t i = 0; i < size; i++)
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69 {
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70 // The identifiers tags are a subset of the main DICOM tags
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71 assert(DicomMap::IsMainDicomTag(tags[i]));
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72
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73 const DicomValue* value = map.TestAndGetValue(tags[i]);
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74 if (value != NULL && value->IsString())
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75 {
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76 std::string s = ServerToolbox::NormalizeIdentifier(value->GetContent());
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77 target.AddIdentifierTag(resource, tags[i], s);
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78 }
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79 }
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80 }
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81
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82
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83 void ResourcesContent::AddMetadata(int64_t resourceId,
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84 MetadataType metadata,
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85 const std::string& value)
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86 {
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87 if (isNewResource_)
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88 {
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89 metadata_.push_back(Metadata(resourceId, metadata, value));
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90 }
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91 else
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92 {
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93 // This would require to handle the incrementation of revision
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94 // numbers in the database backend => only allow setting
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95 // metadata on new resources
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96 throw OrthancException(ErrorCode_NotImplemented);
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97 }
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98 }
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99
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100
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101 void ResourcesContent::AddResource(int64_t resource,
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102 ResourceType level,
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103 const DicomMap& dicomSummary)
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104 {
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105 StoreIdentifiers(*this, resource, level, dicomSummary);
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106
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107 DicomMap tags;
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108
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109 switch (level)
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110 {
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111 case ResourceType_Patient:
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112 dicomSummary.ExtractPatientInformation(tags);
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113 break;
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114
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115 case ResourceType_Study:
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116 // Duplicate the patient tags at the study level (new in Orthanc 0.9.5 - db v6)
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117 dicomSummary.ExtractPatientInformation(tags);
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118 StoreMainDicomTagsInternal(*this, resource, tags);
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119
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120 dicomSummary.ExtractStudyInformation(tags);
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121 break;
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122
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123 case ResourceType_Series:
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124 dicomSummary.ExtractSeriesInformation(tags);
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125 break;
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126
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127 case ResourceType_Instance:
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128 dicomSummary.ExtractInstanceInformation(tags);
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129 break;
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130
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131 default:
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132 throw OrthancException(ErrorCode_InternalError);
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133 }
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134
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135 StoreMainDicomTagsInternal(*this, resource, tags); // saves only leaf tags, not sequences
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136 }
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137
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138
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139 void ResourcesContent::Store(Compatibility::ISetResourcesContent& compatibility) const
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140 {
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141 for (std::list<TagValue>::const_iterator
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142 it = tags_.begin(); it != tags_.end(); ++it)
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143 {
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144 if (it->IsIdentifier())
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145 {
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146 compatibility.SetIdentifierTag(it->GetResourceId(), it->GetTag(), it->GetValue());
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147 }
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148 else
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149 {
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150 compatibility.SetMainDicomTag(it->GetResourceId(), it->GetTag(), it->GetValue());
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151 }
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152 }
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153
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154 for (std::list<Metadata>::const_iterator
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155 it = metadata_.begin(); it != metadata_.end(); ++it)
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156 {
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157 assert(isNewResource_);
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158 compatibility.SetMetadata(it->GetResourceId(), it->GetType(), it->GetValue(), 0 /* initial revision number */);
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159 }
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160 }
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161 }