Mercurial > hg > orthanc

annotate OrthancServer/Sources/Database/ResourcesContent.cpp @ 5044:6fed78e13233

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Refactored DicomMap to handle sequences when needed
author Alain Mazy <am@osimis.io>
date Tue, 28 Jun 2022 17:45:09 +0200
parents 6eff25f70121
children 0ea402b4d901
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "../PrecompiledHeadersServer.h"
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24 #include "ResourcesContent.h"
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25
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26 #include "Compatibility/ISetResourcesContent.h"
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27 #include "../ServerToolbox.h"
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28
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29 #include "../../../OrthancFramework/Sources/DicomFormat/DicomArray.h"
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30 #include "../../../OrthancFramework/Sources/OrthancException.h"
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31 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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32
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33 #include <cassert>
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34
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35
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36 namespace Orthanc
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37 {
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38 static void StoreMainDicomTagsInternal(ResourcesContent& target,
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39 int64_t resource,
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40 const DicomMap& tags)
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41 {
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42 DicomArray flattened(tags);
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43
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44 for (size_t i = 0; i < flattened.GetSize(); i++)
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45 {
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46 const DicomElement& element = flattened.GetElement(i);
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47 const DicomTag& tag = element.GetTag();
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48 const DicomValue& value = element.GetValue();
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49 if (value.IsString())
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50 {
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51 target.AddMainDicomTag(resource, tag, element.GetValue().GetContent());
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52 }
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53 }
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54 }
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55
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56
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57 static void StoreIdentifiers(ResourcesContent& target,
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58 int64_t resource,
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59 ResourceType level,
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60 const DicomMap& map)
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61 {
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62 const DicomTag* tags;
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63 size_t size;
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64
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65 ServerToolbox::LoadIdentifiers(tags, size, level);
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66
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67 for (size_t i = 0; i < size; i++)
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68 {
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69 // The identifiers tags are a subset of the main DICOM tags
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70 assert(DicomMap::IsMainDicomTag(tags[i]));
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71
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72 const DicomValue* value = map.TestAndGetValue(tags[i]);
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73 if (value != NULL && value->IsString())
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74 {
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75 std::string s = ServerToolbox::NormalizeIdentifier(value->GetContent());
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76 target.AddIdentifierTag(resource, tags[i], s);
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77 }
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78 }
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79 }
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80
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81
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82 void ResourcesContent::AddMetadata(int64_t resourceId,
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83 MetadataType metadata,
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84 const std::string& value)
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85 {
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86 if (isNewResource_)
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87 {
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88 metadata_.push_back(Metadata(resourceId, metadata, value));
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89 }
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90 else
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91 {
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92 // This would require to handle the incrementation of revision
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93 // numbers in the database backend => only allow setting
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94 // metadata on new resources
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95 throw OrthancException(ErrorCode_NotImplemented);
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96 }
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97 }
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98
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99
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100 void ResourcesContent::AddResource(int64_t resource,
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101 ResourceType level,
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102 const DicomMap& dicomSummary)
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103 {
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104 StoreIdentifiers(*this, resource, level, dicomSummary);
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105
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106 DicomMap tags;
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107
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108 switch (level)
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109 {
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110 case ResourceType_Patient:
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111 dicomSummary.ExtractPatientInformation(tags);
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112 break;
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113
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114 case ResourceType_Study:
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115 // Duplicate the patient tags at the study level (new in Orthanc 0.9.5 - db v6)
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116 dicomSummary.ExtractPatientInformation(tags);
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117 StoreMainDicomTagsInternal(*this, resource, tags);
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118
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119 dicomSummary.ExtractStudyInformation(tags);
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120 break;
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121
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122 case ResourceType_Series:
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123 dicomSummary.ExtractSeriesInformation(tags);
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124 break;
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125
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126 case ResourceType_Instance:
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127 dicomSummary.ExtractInstanceInformation(tags);
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128 break;
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129
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130 default:
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131 throw OrthancException(ErrorCode_InternalError);
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132 }
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133
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134 StoreMainDicomTagsInternal(*this, resource, tags); // saves only leaf tags, not sequences
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135 }
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136
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137
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138 void ResourcesContent::Store(Compatibility::ISetResourcesContent& compatibility) const
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139 {
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140 for (std::list<TagValue>::const_iterator
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141 it = tags_.begin(); it != tags_.end(); ++it)
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142 {
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143 if (it->isIdentifier_)
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144 {
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145 compatibility.SetIdentifierTag(it->resourceId_, it->tag_, it->value_);
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146 }
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147 else
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148 {
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149 compatibility.SetMainDicomTag(it->resourceId_, it->tag_, it->value_);
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150 }
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151 }
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152
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153 for (std::list<Metadata>::const_iterator
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154 it = metadata_.begin(); it != metadata_.end(); ++it)
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155 {
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156 assert(isNewResource_);
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157 compatibility.SetMetadata(it->resourceId_, it->metadata_, it->value_, 0 /* initial revision number */);
3094
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158 }
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159 }
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160 }