Mercurial > hg > orthanc
annotate OrthancServer/ServerContext.cpp @ 4042:f5c86a00cae0
moving DownloadOrthancFramework.cmake to Resources/CMake/
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 10 Jun 2020 16:44:29 +0200 |
| parents | 058b5ade8acd |
| children |
| rev | line source |
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| 224 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
| 224 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 11 * | |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 23 * | |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
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34 #include "PrecompiledHeadersServer.h" |
| 224 | 35 #include "ServerContext.h" |
| 36 | |
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37 #include "../Core/DicomParsing/Internals/DicomImageDecoder.h" |
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38 #include "../Core/Cache/SharedArchive.h" |
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39 #include "../Core/DicomParsing/DcmtkTranscoder.h" |
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40 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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41 #include "../Core/FileStorage/StorageAccessor.h" |
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42 #include "../Core/HttpServer/FilesystemHttpSender.h" |
| 1525 | 43 #include "../Core/HttpServer/HttpStreamTranscoder.h" |
| 3097 | 44 #include "../Core/JobsEngine/SetOfInstancesJob.h" |
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45 #include "../Core/Logging.h" |
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46 #include "../Core/MetricsRegistry.h" |
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47 #include "../Plugins/Engine/OrthancPlugins.h" |
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48 |
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49 #include "OrthancConfiguration.h" |
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50 #include "OrthancRestApi/OrthancRestApi.h" |
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51 #include "Search/DatabaseLookup.h" |
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52 #include "ServerJobs/OrthancJobUnserializer.h" |
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53 #include "ServerToolbox.h" |
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54 #include "StorageCommitmentReports.h" |
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55 |
| 794 | 56 #include <dcmtk/dcmdata/dcfilefo.h> |
| 224 | 57 |
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58 |
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59 |
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60 #define ENABLE_DICOM_CACHE 1 |
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61 |
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62 static const size_t DICOM_CACHE_SIZE = 2; |
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63 |
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64 /** |
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65 * IMPORTANT: We make the assumption that the same instance of |
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66 * FileStorage can be accessed from multiple threads. This seems OK |
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67 * since the filesystem implements the required locking mechanisms, |
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68 * but maybe a read-writer lock on the "FileStorage" could be |
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69 * useful. Conversely, "ServerIndex" already implements mutex-based |
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70 * locking. |
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71 **/ |
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72 |
| 224 | 73 namespace Orthanc |
| 74 { | |
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75 void ServerContext::ChangeThread(ServerContext* that, |
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76 unsigned int sleepDelay) |
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77 { |
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78 while (!that->done_) |
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79 { |
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80 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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81 |
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82 if (obj.get() != NULL) |
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83 { |
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84 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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85 |
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86 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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87 for (ServerListeners::iterator it = that->listeners_.begin(); |
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88 it != that->listeners_.end(); ++it) |
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89 { |
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90 try |
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91 { |
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92 try |
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93 { |
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94 it->GetListener().SignalChange(change); |
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95 } |
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96 catch (std::bad_alloc&) |
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97 { |
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98 LOG(ERROR) << "Not enough memory while signaling a change"; |
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99 } |
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100 catch (...) |
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101 { |
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102 throw OrthancException(ErrorCode_InternalError); |
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103 } |
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104 } |
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105 catch (OrthancException& e) |
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106 { |
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107 LOG(ERROR) << "Error in the " << it->GetDescription() |
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108 << " callback while signaling a change: " << e.What() |
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109 << " (code " << e.GetErrorCode() << ")"; |
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110 } |
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111 } |
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112 } |
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113 } |
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114 } |
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115 |
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116 |
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117 void ServerContext::SaveJobsThread(ServerContext* that, |
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118 unsigned int sleepDelay) |
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119 { |
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120 static const boost::posix_time::time_duration PERIODICITY = |
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121 boost::posix_time::seconds(10); |
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122 |
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123 boost::posix_time::ptime next = |
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124 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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125 |
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126 while (!that->done_) |
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127 { |
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128 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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129 |
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130 if (that->haveJobsChanged_ || |
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131 boost::posix_time::microsec_clock::universal_time() >= next) |
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132 { |
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133 that->haveJobsChanged_ = false; |
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134 that->SaveJobsEngine(); |
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135 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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136 } |
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137 } |
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138 } |
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139 |
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140 |
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141 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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142 { |
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143 haveJobsChanged_ = true; |
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144 mainLua_.SignalJobSubmitted(jobId); |
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145 plugins_->SignalJobSubmitted(jobId); |
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146 } |
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147 |
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148 |
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149 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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150 { |
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151 haveJobsChanged_ = true; |
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152 mainLua_.SignalJobSuccess(jobId); |
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153 plugins_->SignalJobSuccess(jobId); |
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154 } |
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155 |
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156 |
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157 void ServerContext::SignalJobFailure(const std::string& jobId) |
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158 { |
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159 haveJobsChanged_ = true; |
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160 mainLua_.SignalJobFailure(jobId); |
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161 plugins_->SignalJobFailure(jobId); |
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162 } |
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163 |
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164 |
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165 void ServerContext::SetupJobsEngine(bool unitTesting, |
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166 bool loadJobsFromDatabase) |
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167 { |
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168 if (loadJobsFromDatabase) |
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169 { |
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170 std::string serialized; |
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171 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry)) |
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172 { |
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173 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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174 OrthancJobUnserializer unserializer(*this); |
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175 |
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176 try |
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177 { |
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178 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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179 } |
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180 catch (OrthancException& e) |
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181 { |
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182 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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183 } |
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184 } |
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185 else |
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186 { |
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187 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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188 } |
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189 } |
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190 else |
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191 { |
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192 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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193 } |
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194 |
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195 jobsEngine_.GetRegistry().SetObserver(*this); |
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196 jobsEngine_.Start(); |
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197 isJobsEngineUnserialized_ = true; |
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198 |
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199 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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200 } |
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201 |
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202 |
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203 void ServerContext::SaveJobsEngine() |
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204 { |
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205 if (saveJobs_) |
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206 { |
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207 VLOG(1) << "Serializing the content of the jobs engine"; |
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208 |
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209 try |
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210 { |
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211 Json::Value value; |
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212 jobsEngine_.GetRegistry().Serialize(value); |
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213 |
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214 Json::FastWriter writer; |
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215 std::string serialized = writer.write(value); |
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216 |
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217 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, serialized); |
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218 } |
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219 catch (OrthancException& e) |
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220 { |
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221 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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222 } |
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223 } |
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224 } |
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225 |
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226 |
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227 ServerContext::ServerContext(IDatabaseWrapper& database, |
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228 IStorageArea& area, |
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229 bool unitTesting, |
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230 size_t maxCompletedJobs) : |
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231 index_(*this, database, (unitTesting ? 20 : 500)), |
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232 area_(area), |
| 656 | 233 compressionEnabled_(false), |
|
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234 storeMD5_(true), |
|
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235 provider_(*this), |
|
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236 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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237 mainLua_(*this), |
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238 filterLua_(*this), |
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239 luaListener_(*this), |
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240 jobsEngine_(maxCompletedJobs), |
|
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241 #if ORTHANC_ENABLE_PLUGINS == 1 |
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242 plugins_(NULL), |
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243 #endif |
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244 done_(false), |
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245 haveJobsChanged_(false), |
|
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246 isJobsEngineUnserialized_(false), |
|
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247 metricsRegistry_(new MetricsRegistry), |
|
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248 isHttpServerSecure_(true), |
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249 isExecuteLuaEnabled_(false), |
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250 overwriteInstances_(false), |
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251 dcmtkTranscoder_(new DcmtkTranscoder), |
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252 isIngestTranscoding_(false) |
| 224 | 253 { |
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254 try |
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255 { |
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256 unsigned int lossyQuality; |
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257 |
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258 { |
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259 OrthancConfiguration::ReaderLock lock; |
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260 |
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261 queryRetrieveArchive_.reset( |
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262 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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263 mediaArchive_.reset( |
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264 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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265 defaultLocalAet_ = lock.GetConfiguration().GetStringParameter("DicomAet", "ORTHANC"); |
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266 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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267 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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268 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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269 |
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270 // New configuration options in Orthanc 1.5.1 |
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271 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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272 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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273 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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274 |
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275 // New configuration option in Orthanc 1.6.0 |
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276 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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277 |
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278 // New options in Orthanc 1.7.0 |
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279 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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280 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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281 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
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282 |
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283 std::string s; |
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284 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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285 { |
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286 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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287 { |
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288 isIngestTranscoding_ = true; |
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289 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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290 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
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291 } |
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292 else |
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293 { |
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294 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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295 "Unknown transfer syntax for ingest transcoding: " + s); |
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296 } |
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297 } |
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298 else |
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299 { |
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300 isIngestTranscoding_ = false; |
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301 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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302 } |
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303 } |
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304 |
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305 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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306 |
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307 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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308 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
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309 |
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310 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
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311 } |
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312 catch (OrthancException&) |
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313 { |
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314 Stop(); |
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315 throw; |
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316 } |
| 224 | 317 } |
| 318 | |
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319 |
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320 |
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321 ServerContext::~ServerContext() |
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322 { |
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323 if (!done_) |
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324 { |
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325 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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326 Stop(); |
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327 } |
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328 } |
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329 |
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330 |
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331 void ServerContext::Stop() |
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332 { |
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333 if (!done_) |
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334 { |
| 1459 | 335 { |
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336 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
| 1459 | 337 listeners_.clear(); |
| 338 } | |
| 339 | |
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340 done_ = true; |
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341 |
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342 if (changeThread_.joinable()) |
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343 { |
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344 changeThread_.join(); |
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345 } |
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346 |
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347 if (saveJobsThread_.joinable()) |
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348 { |
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349 saveJobsThread_.join(); |
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350 } |
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351 |
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352 jobsEngine_.GetRegistry().ResetObserver(); |
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353 |
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354 if (isJobsEngineUnserialized_) |
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355 { |
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356 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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357 SaveJobsEngine(); |
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358 } |
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359 |
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360 // Do not change the order below! |
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361 jobsEngine_.Stop(); |
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362 index_.Stop(); |
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363 } |
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364 } |
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365 |
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366 |
| 236 | 367 void ServerContext::SetCompressionEnabled(bool enabled) |
| 368 { | |
| 369 if (enabled) | |
| 370 LOG(WARNING) << "Disk compression is enabled"; | |
| 371 else | |
| 372 LOG(WARNING) << "Disk compression is disabled"; | |
| 373 | |
| 374 compressionEnabled_ = enabled; | |
| 375 } | |
| 376 | |
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377 |
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378 void ServerContext::RemoveFile(const std::string& fileUuid, |
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379 FileContentType type) |
|
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380 { |
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381 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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382 accessor.Remove(fileUuid, type); |
|
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383 } |
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384 |
|
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385 |
|
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386 StoreStatus ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
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387 DicomInstanceToStore& dicom, |
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388 StoreInstanceMode mode) |
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389 { |
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390 bool overwrite; |
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391 switch (mode) |
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392 { |
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393 case StoreInstanceMode_Default: |
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394 overwrite = overwriteInstances_; |
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395 break; |
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396 |
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397 case StoreInstanceMode_OverwriteDuplicate: |
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398 overwrite = true; |
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399 break; |
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400 |
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401 case StoreInstanceMode_IgnoreDuplicate: |
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402 overwrite = false; |
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403 break; |
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404 |
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405 default: |
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406 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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407 } |
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408 |
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409 try |
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410 { |
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411 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
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412 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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413 |
|
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414 resultPublicId = dicom.GetHasher().HashInstance(); |
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415 |
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416 Json::Value simplifiedTags; |
| 2120 | 417 ServerToolbox::SimplifyTags(simplifiedTags, dicom.GetJson(), DicomToJsonFormat_Human); |
|
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418 |
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419 // Test if the instance must be filtered out |
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420 bool accepted = true; |
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421 |
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422 { |
|
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423 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
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424 |
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425 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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426 { |
|
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427 try |
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428 { |
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429 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
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430 { |
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431 accepted = false; |
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432 break; |
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433 } |
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434 } |
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435 catch (OrthancException& e) |
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436 { |
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437 LOG(ERROR) << "Error in the " << it->GetDescription() |
|
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438 << " callback while receiving an instance: " << e.What() |
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439 << " (code " << e.GetErrorCode() << ")"; |
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440 throw; |
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441 } |
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442 } |
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443 } |
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444 |
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445 if (!accepted) |
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446 { |
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447 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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448 return StoreStatus_FilteredOut; |
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449 } |
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450 |
|
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451 { |
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452 // Remove the file from the DicomCache (useful if |
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453 // "OverwriteInstances" is set to "true") |
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454 boost::mutex::scoped_lock lock(dicomCacheMutex_); |
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455 dicomCache_.Invalidate(resultPublicId); |
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456 } |
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457 |
|
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458 // TODO Should we use "gzip" instead? |
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459 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
|
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460 |
|
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461 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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462 FileContentType_Dicom, compression, storeMD5_); |
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463 FileInfo jsonInfo = accessor.Write(dicom.GetJson().toStyledString(), |
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464 FileContentType_DicomAsJson, compression, storeMD5_); |
|
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465 |
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466 ServerIndex::Attachments attachments; |
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467 attachments.push_back(dicomInfo); |
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468 attachments.push_back(jsonInfo); |
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469 |
|
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access metadata in plugins
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470 typedef std::map<MetadataType, std::string> InstanceMetadata; |
|
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471 InstanceMetadata instanceMetadata; |
|
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472 StoreStatus status = index_.Store( |
|
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|
473 instanceMetadata, dicom, attachments, overwrite); |
|
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474 |
|
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|
475 // Only keep the metadata for the "instance" level |
|
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476 dicom.GetMetadata().clear(); |
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477 |
|
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478 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
| 1304 | 479 it != instanceMetadata.end(); ++it) |
|
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480 { |
|
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481 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
|
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|
482 it->second)); |
|
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483 } |
|
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|
484 |
|
1004
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485 if (status != StoreStatus_Success) |
|
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486 { |
|
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487 accessor.Remove(dicomInfo); |
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488 accessor.Remove(jsonInfo); |
|
1004
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489 } |
|
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|
490 |
|
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|
491 switch (status) |
|
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diff
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|
492 { |
|
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493 case StoreStatus_Success: |
|
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494 LOG(INFO) << "New instance stored"; |
|
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|
495 break; |
|
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diff
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|
496 |
|
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changeset
|
497 case StoreStatus_AlreadyStored: |
|
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498 LOG(INFO) << "Already stored"; |
|
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|
499 break; |
|
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diff
changeset
|
500 |
|
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DicomInstanceToStore
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diff
changeset
|
501 case StoreStatus_Failure: |
|
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diff
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|
502 LOG(ERROR) << "Store failure"; |
|
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DicomInstanceToStore
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parents:
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diff
changeset
|
503 break; |
|
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DicomInstanceToStore
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diff
changeset
|
504 |
|
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DicomInstanceToStore
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diff
changeset
|
505 default: |
|
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DicomInstanceToStore
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diff
changeset
|
506 // This should never happen |
|
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DicomInstanceToStore
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diff
changeset
|
507 break; |
|
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DicomInstanceToStore
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diff
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|
508 } |
|
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DicomInstanceToStore
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diff
changeset
|
509 |
|
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DicomInstanceToStore
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parents:
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diff
changeset
|
510 if (status == StoreStatus_Success || |
|
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DicomInstanceToStore
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diff
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|
511 status == StoreStatus_AlreadyStored) |
|
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DicomInstanceToStore
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diff
changeset
|
512 { |
|
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
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diff
changeset
|
513 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
|
1453
c0bdc47165ef
code to warn about possible threading problems
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diff
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|
514 |
|
1433
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diff
changeset
|
515 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
|
1066
bb82e5e818e9
OnStoredInstance callback in plugins
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diff
changeset
|
516 { |
|
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OnStoredInstance callback in plugins
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diff
changeset
|
517 try |
|
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diff
changeset
|
518 { |
|
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
519 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
|
1066
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diff
changeset
|
520 } |
|
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diff
changeset
|
521 catch (OrthancException& e) |
|
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diff
changeset
|
522 { |
|
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diff
changeset
|
523 LOG(ERROR) << "Error in the " << it->GetDescription() |
|
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
524 << " callback while receiving an instance: " << e.What() |
|
cadfe0a2a393
fix in the sample basic plugin
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parents:
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diff
changeset
|
525 << " (code " << e.GetErrorCode() << ")"; |
|
1066
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diff
changeset
|
526 } |
|
bb82e5e818e9
OnStoredInstance callback in plugins
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diff
changeset
|
527 } |
|
1004
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DicomInstanceToStore
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parents:
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diff
changeset
|
528 } |
|
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
529 |
|
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
530 return status; |
|
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
531 } |
|
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DicomInstanceToStore
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parents:
1002
diff
changeset
|
532 catch (OrthancException& e) |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
533 { |
|
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
534 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
535 { |
|
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2304
diff
changeset
|
536 dicom.GetSummary().LogMissingTagsForStore(); |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
537 } |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
538 |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
539 throw; |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
540 } |
|
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
541 } |
|
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
542 |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
543 |
|
3912
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
544 StoreStatus ServerContext::Store(std::string& resultPublicId, |
|
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diff
changeset
|
545 DicomInstanceToStore& dicom, |
|
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diff
changeset
|
546 StoreInstanceMode mode) |
|
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diff
changeset
|
547 { |
|
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
548 if (!isIngestTranscoding_) |
|
3912
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diff
changeset
|
549 { |
|
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
550 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
|
3912
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diff
changeset
|
551 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
|
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diff
changeset
|
552 } |
|
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
553 else |
|
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prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
554 { |
|
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
555 // Automated transcoding of incoming DICOM files |
|
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
556 |
|
3912
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prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
557 DicomTransferSyntax sourceSyntax; |
|
7610af1532c3
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parents:
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diff
changeset
|
558 if (!FromDcmtkBridge::LookupOrthancTransferSyntax( |
|
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parents:
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diff
changeset
|
559 sourceSyntax, dicom.GetParsedDicomFile().GetDcmtkObject()) || |
|
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
560 sourceSyntax == ingestTransferSyntax_) |
|
3912
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parents:
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diff
changeset
|
561 { |
|
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parents:
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diff
changeset
|
562 // No transcoding |
|
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diff
changeset
|
563 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
|
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diff
changeset
|
564 } |
|
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diff
changeset
|
565 else |
|
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parents:
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diff
changeset
|
566 { |
|
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parents:
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diff
changeset
|
567 std::set<DicomTransferSyntax> syntaxes; |
|
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
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parents:
3938
diff
changeset
|
568 syntaxes.insert(ingestTransferSyntax_); |
|
3912
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diff
changeset
|
569 |
|
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
570 IDicomTranscoder::DicomImage source; |
|
0b3256c3ee14
simplified IDicomTranscoder
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parents:
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diff
changeset
|
571 source.SetExternalBuffer(dicom.GetBufferData(), dicom.GetBufferSize()); |
|
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
572 |
|
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
573 IDicomTranscoder::DicomImage transcoded; |
|
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
574 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
|
3912
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diff
changeset
|
575 { |
|
3945
0b3256c3ee14
simplified IDicomTranscoder
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parents:
3944
diff
changeset
|
576 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
|
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
577 |
|
3912
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
578 DicomInstanceToStore toStore; |
|
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diff
changeset
|
579 toStore.SetParsedDicomFile(*tmp); |
|
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diff
changeset
|
580 toStore.SetOrigin(dicom.GetOrigin()); |
|
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diff
changeset
|
581 |
|
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parents:
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diff
changeset
|
582 StoreStatus ok = StoreAfterTranscoding(resultPublicId, toStore, mode); |
| 3938 | 583 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
| 584 | |
|
3912
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
585 return ok; |
|
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prototyping automated transcoding of incoming DICOM files
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586 } |
|
3945
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simplified IDicomTranscoder
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587 else |
|
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simplified IDicomTranscoder
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588 { |
|
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simplified IDicomTranscoder
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589 // Cannot transcode => store the original file |
|
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590 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
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591 } |
|
3912
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prototyping automated transcoding of incoming DICOM files
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592 } |
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prototyping automated transcoding of incoming DICOM files
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593 } |
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prototyping automated transcoding of incoming DICOM files
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594 } |
|
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prototyping automated transcoding of incoming DICOM files
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595 |
|
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prototyping automated transcoding of incoming DICOM files
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596 |
|
1146
200fcac0deb4
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597 void ServerContext::AnswerAttachment(RestApiOutput& output, |
|
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598 const std::string& resourceId, |
|
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599 FileContentType content) |
|
226
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600 { |
|
232
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601 FileInfo attachment; |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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602 if (!index_.LookupAttachment(attachment, resourceId, content)) |
|
232
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603 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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604 throw OrthancException(ErrorCode_UnknownResource); |
| 236 | 605 } |
|
226
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606 |
|
3175
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new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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|
607 StorageAccessor accessor(area_, GetMetricsRegistry()); |
|
1772
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MIME content type can be associated to custom attachments (cf. "UserContentType")
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608 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
|
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609 } |
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|
610 |
|
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refactoring to read files
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611 |
|
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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612 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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613 FileContentType attachmentType, |
|
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614 CompressionType compression) |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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615 { |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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616 LOG(INFO) << "Changing compression type for attachment " |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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617 << EnumerationToString(attachmentType) |
|
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618 << " of resource " << resourceId << " to " |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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619 << compression; |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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620 |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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621 FileInfo attachment; |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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622 if (!index_.LookupAttachment(attachment, resourceId, attachmentType)) |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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623 { |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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624 throw OrthancException(ErrorCode_UnknownResource); |
|
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625 } |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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changeset
|
626 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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627 if (attachment.GetCompressionType() == compression) |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
628 { |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
629 // Nothing to do |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
630 return; |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
631 } |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
632 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
633 std::string content; |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
634 |
|
3175
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|
635 StorageAccessor accessor(area_, GetMetricsRegistry()); |
|
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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636 accessor.Read(content, attachment); |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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637 |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
638 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
639 content.size(), attachmentType, compression, storeMD5_); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
640 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
641 try |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
642 { |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
643 StoreStatus status = index_.AddAttachment(modified, resourceId); |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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644 if (status != StoreStatus_Success) |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
645 { |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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646 accessor.Remove(modified); |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
647 throw OrthancException(ErrorCode_Database); |
|
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|
648 } |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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649 } |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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changeset
|
650 catch (OrthancException&) |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
651 { |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
652 accessor.Remove(modified); |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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changeset
|
653 throw; |
|
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
654 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
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|
655 } |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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changeset
|
656 |
|
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
657 |
|
2409
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ignore-length argument if retrieving DICOM tags
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parents:
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diff
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|
658 void ServerContext::ReadDicomAsJsonInternal(std::string& result, |
|
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ignore-length argument if retrieving DICOM tags
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|
659 const std::string& instancePublicId) |
| 2127 | 660 { |
|
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
661 FileInfo attachment; |
|
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
662 if (index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomAsJson)) |
|
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
663 { |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
664 ReadAttachment(result, attachment); |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
665 } |
|
2409
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ignore-length argument if retrieving DICOM tags
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|
666 else |
|
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ignore-length argument if retrieving DICOM tags
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|
667 { |
|
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|
668 // The "DICOM as JSON" summary is not available from the Orthanc |
|
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ignore-length argument if retrieving DICOM tags
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|
669 // store (most probably deleted), reconstruct it from the DICOM file |
|
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|
670 std::string dicom; |
|
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|
671 ReadDicom(dicom, instancePublicId); |
|
2128
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|
672 |
|
2409
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|
673 LOG(INFO) << "Reconstructing the missing DICOM-as-JSON summary for instance: " |
|
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|
674 << instancePublicId; |
|
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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diff
changeset
|
675 |
|
2409
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ignore-length argument if retrieving DICOM tags
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|
676 ParsedDicomFile parsed(dicom); |
|
2128
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parents:
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diff
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|
677 |
|
2409
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ignore-length argument if retrieving DICOM tags
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|
678 Json::Value summary; |
|
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ignore-length argument if retrieving DICOM tags
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|
679 parsed.DatasetToJson(summary); |
|
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diff
changeset
|
680 |
|
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ignore-length argument if retrieving DICOM tags
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|
681 result = summary.toStyledString(); |
|
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parents:
2127
diff
changeset
|
682 |
|
2409
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ignore-length argument if retrieving DICOM tags
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diff
changeset
|
683 if (!AddAttachment(instancePublicId, FileContentType_DicomAsJson, |
|
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|
684 result.c_str(), result.size())) |
|
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ignore-length argument if retrieving DICOM tags
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|
685 { |
| 2956 | 686 throw OrthancException(ErrorCode_InternalError, |
| 687 "Cannot associate the DICOM-as-JSON summary to instance: " + instancePublicId); | |
|
2409
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ignore-length argument if retrieving DICOM tags
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688 } |
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689 } |
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690 } |
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691 |
|
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692 |
|
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693 void ServerContext::ReadDicomAsJson(std::string& result, |
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694 const std::string& instancePublicId, |
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695 const std::set<DicomTag>& ignoreTagLength) |
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696 { |
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697 if (ignoreTagLength.empty()) |
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698 { |
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699 ReadDicomAsJsonInternal(result, instancePublicId); |
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700 } |
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701 else |
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702 { |
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703 Json::Value tmp; |
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704 ReadDicomAsJson(tmp, instancePublicId, ignoreTagLength); |
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705 result = tmp.toStyledString(); |
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706 } |
| 2127 | 707 } |
| 708 | |
| 709 | |
| 2124 | 710 void ServerContext::ReadDicomAsJson(Json::Value& result, |
|
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711 const std::string& instancePublicId, |
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712 const std::set<DicomTag>& ignoreTagLength) |
|
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713 { |
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714 if (ignoreTagLength.empty()) |
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715 { |
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716 std::string tmp; |
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717 ReadDicomAsJsonInternal(tmp, instancePublicId); |
|
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718 |
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719 Json::Reader reader; |
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720 if (!reader.parse(tmp, result)) |
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721 { |
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722 throw OrthancException(ErrorCode_CorruptedFile); |
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723 } |
|
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724 } |
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725 else |
|
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726 { |
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727 // The "DicomAsJson" attachment might have stored some tags as |
|
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728 // "too long". We are forced to re-parse the DICOM file. |
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729 std::string dicom; |
|
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730 ReadDicom(dicom, instancePublicId); |
|
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731 |
|
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732 ParsedDicomFile parsed(dicom); |
|
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733 parsed.DatasetToJson(result, ignoreTagLength); |
|
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734 } |
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735 } |
|
227
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736 |
|
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|
737 |
|
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|
738 void ServerContext::ReadAttachment(std::string& result, |
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739 const std::string& instancePublicId, |
|
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740 FileContentType content, |
|
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|
741 bool uncompressIfNeeded) |
|
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742 { |
|
232
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743 FileInfo attachment; |
|
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diff
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744 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
|
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|
745 { |
| 2956 | 746 throw OrthancException(ErrorCode_InternalError, |
| 747 "Unable to read attachment " + EnumerationToString(content) + | |
| 748 " of instance " + instancePublicId); | |
|
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749 } |
| 1550 | 750 |
|
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751 assert(attachment.GetContentType() == content); |
|
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752 |
| 1550 | 753 if (uncompressIfNeeded) |
| 754 { | |
|
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|
755 ReadAttachment(result, attachment); |
| 1550 | 756 } |
| 757 else | |
| 758 { | |
|
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759 // Do not uncompress the content of the storage area, return the |
| 1550 | 760 // raw data |
|
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changeset
|
761 StorageAccessor accessor(area_, GetMetricsRegistry()); |
|
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|
762 accessor.ReadRaw(result, attachment); |
| 1550 | 763 } |
|
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764 } |
|
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diff
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|
765 |
|
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|
766 |
|
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767 void ServerContext::ReadAttachment(std::string& result, |
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768 const FileInfo& attachment) |
|
1778
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|
769 { |
|
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770 // This will decompress the attachment |
|
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|
771 StorageAccessor accessor(area_, GetMetricsRegistry()); |
|
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|
772 accessor.Read(result, attachment); |
|
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|
773 } |
|
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diff
changeset
|
774 |
|
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diff
changeset
|
775 |
|
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776 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
|
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777 { |
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|
778 std::string content; |
| 2124 | 779 context_.ReadDicom(content, instancePublicId); |
|
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780 return new ParsedDicomFile(content); |
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|
781 } |
|
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|
782 |
|
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|
783 |
|
778
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|
784 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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|
785 const std::string& instancePublicId) : |
|
1129
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|
786 that_(that), |
|
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|
787 lock_(that_.dicomCacheMutex_) |
|
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788 { |
|
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789 #if ENABLE_DICOM_CACHE == 0 |
|
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|
790 static std::unique_ptr<IDynamicObject> p; |
| 3836 | 791 p.reset(that_.provider_.Provide(instancePublicId)); |
|
778
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792 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
|
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793 #else |
|
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794 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
|
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|
795 #endif |
|
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|
796 } |
|
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diff
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|
797 |
|
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diff
changeset
|
798 |
|
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diff
changeset
|
799 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
|
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|
800 { |
|
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801 } |
| 304 | 802 |
| 803 | |
|
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|
804 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
|
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805 { |
|
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changeset
|
806 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
|
1549
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changeset
|
807 storeMD5_ = storeMD5; |
|
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|
808 } |
|
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diff
changeset
|
809 |
|
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
810 |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
811 bool ServerContext::AddAttachment(const std::string& resourceId, |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
812 FileContentType attachmentType, |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
813 const void* data, |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
814 size_t size) |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
815 { |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
816 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
817 |
|
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
818 // TODO Should we use "gzip" instead? |
|
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
819 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
|
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
820 |
|
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
821 StorageAccessor accessor(area_, GetMetricsRegistry()); |
|
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
822 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
|
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
823 |
|
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
824 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
|
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
825 if (status != StoreStatus_Success) |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
826 { |
|
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
827 accessor.Remove(attachment); |
|
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
828 return false; |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
829 } |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
830 else |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
831 { |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
832 return true; |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
833 } |
|
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
834 } |
|
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
835 |
|
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
836 |
|
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
837 bool ServerContext::DeleteResource(Json::Value& target, |
|
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
838 const std::string& uuid, |
|
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
839 ResourceType expectedType) |
|
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
840 { |
| 2507 | 841 if (expectedType == ResourceType_Instance) |
| 842 { | |
| 843 // remove the file from the DicomCache | |
| 844 boost::mutex::scoped_lock lock(dicomCacheMutex_); | |
| 845 dicomCache_.Invalidate(uuid); | |
| 846 } | |
| 847 | |
|
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
848 return index_.DeleteResource(target, uuid, expectedType); |
|
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
849 } |
|
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
850 |
|
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
851 |
| 1198 | 852 void ServerContext::SignalChange(const ServerIndexChange& change) |
|
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
853 { |
|
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
854 pendingChanges_.Enqueue(change.Clone()); |
|
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
855 } |
|
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
856 |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
857 |
|
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
858 #if ORTHANC_ENABLE_PLUGINS == 1 |
|
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
859 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
|
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
860 { |
|
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
861 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
| 1459 | 862 |
|
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
863 plugins_ = &plugins; |
|
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
864 |
|
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
865 // TODO REFACTOR THIS |
|
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
866 listeners_.clear(); |
|
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
867 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
|
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
868 listeners_.push_back(ServerListener(plugins, "plugin")); |
|
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
869 } |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
870 |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
871 |
|
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
872 void ServerContext::ResetPlugins() |
|
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
873 { |
|
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
874 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
| 1459 | 875 |
|
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
876 plugins_ = NULL; |
|
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
877 |
|
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
878 // TODO REFACTOR THIS |
|
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
879 listeners_.clear(); |
|
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
880 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
|
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
881 } |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
882 |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
883 |
|
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
884 const OrthancPlugins& ServerContext::GetPlugins() const |
|
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
885 { |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
886 if (HasPlugins()) |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
887 { |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
888 return *plugins_; |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
889 } |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
890 else |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
891 { |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
892 throw OrthancException(ErrorCode_InternalError); |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
893 } |
|
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
894 } |
|
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
895 |
|
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
896 OrthancPlugins& ServerContext::GetPlugins() |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
897 { |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
898 if (HasPlugins()) |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
899 { |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
900 return *plugins_; |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
901 } |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
902 else |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
903 { |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
904 throw OrthancException(ErrorCode_InternalError); |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
905 } |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
906 } |
|
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
907 |
|
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
908 #endif |
|
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
909 |
|
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
910 |
|
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
911 bool ServerContext::HasPlugins() const |
|
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
912 { |
|
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
913 #if ORTHANC_ENABLE_PLUGINS == 1 |
|
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
914 return (plugins_ != NULL); |
|
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
915 #else |
|
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
916 return false; |
|
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
917 #endif |
|
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
918 } |
|
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
919 |
|
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
920 |
|
3021
2cbafb5d5a62
renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3015
diff
changeset
|
921 void ServerContext::Apply(ILookupVisitor& visitor, |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
922 const DatabaseLookup& lookup, |
|
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
923 ResourceType queryLevel, |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
924 size_t since, |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
925 size_t limit) |
|
1757
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|
926 { |
|
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927 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
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928 limitFindInstances_ : limitFindResults_); |
|
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929 |
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|
930 std::vector<std::string> resources, instances; |
|
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|
931 |
|
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|
932 { |
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|
933 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
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934 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit); |
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|
935 } |
|
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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936 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
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|
937 bool complete = (databaseLimit == 0 || |
|
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938 resources.size() <= databaseLimit); |
|
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939 |
|
3005
8265a6b56100
DicomMap::FromDicomAsJson
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940 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
|
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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941 |
|
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|
942 /** |
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943 * "resources" contains the Orthanc ID of the resource at level |
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944 * "queryLevel", "instances" contains one the Orthanc ID of one |
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945 * sample instance from this resource. |
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946 **/ |
|
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947 assert(resources.size() == instances.size()); |
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|
948 |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
949 size_t countResults = 0; |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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950 size_t skipped = 0; |
|
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|
951 |
|
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|
952 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
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|
953 |
|
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|
954 for (size_t i = 0; i < instances.size(); i++) |
|
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ServerContext::Apply lookup
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diff
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|
955 { |
|
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diff
changeset
|
956 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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|
957 // the disk if only "main DICOM tags" are to be returned |
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|
958 |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
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|
959 std::unique_ptr<Json::Value> dicomAsJson; |
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960 |
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|
961 bool hasOnlyMainDicomTags; |
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|
962 DicomMap dicom; |
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|
963 |
|
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|
964 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly || |
|
4182cde57afb
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|
965 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer || |
|
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|
966 lookup.HasOnlyMainDicomTags()) |
|
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967 { |
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968 // Case (1): The main DICOM tags, as stored in the database, |
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969 // are sufficient to look for match |
|
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|
970 |
|
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|
971 DicomMap tmp; |
|
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972 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i])) |
|
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|
973 { |
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974 // The instance has been removed during the execution of the |
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975 // lookup, ignore it |
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|
976 continue; |
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|
977 } |
|
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978 |
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|
979 #if 1 |
|
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980 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
|
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981 // level of interest for the query |
|
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982 switch (queryLevel) |
|
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983 { |
|
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984 // WARNING: Don't reorder cases below, and don't add "break" |
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985 case ResourceType_Instance: |
|
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986 dicom.MergeMainDicomTags(tmp, ResourceType_Instance); |
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987 |
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988 case ResourceType_Series: |
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989 dicom.MergeMainDicomTags(tmp, ResourceType_Series); |
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|
990 |
|
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|
991 case ResourceType_Study: |
|
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|
992 dicom.MergeMainDicomTags(tmp, ResourceType_Study); |
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|
993 |
|
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|
994 case ResourceType_Patient: |
|
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|
995 dicom.MergeMainDicomTags(tmp, ResourceType_Patient); |
|
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|
996 break; |
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|
997 |
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998 default: |
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999 throw OrthancException(ErrorCode_InternalError); |
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1000 } |
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1001 |
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|
1002 // Special case of the "Modality" at the study level, in order |
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1003 // to deal with C-FIND on "ModalitiesInStudy" (0008,0061). |
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1004 // Check out integration test "test_rest_modalities_in_study". |
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1005 if (queryLevel == ResourceType_Study) |
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1006 { |
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|
1007 dicom.CopyTagIfExists(tmp, DICOM_TAG_MODALITY); |
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1008 } |
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|
1009 #else |
|
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|
1010 dicom.Assign(tmp); // This emulates Orthanc <= 1.5.8 |
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|
1011 #endif |
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1012 |
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1013 hasOnlyMainDicomTags = true; |
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1014 } |
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1015 else |
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1016 { |
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1017 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
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1018 // the storage area |
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1019 dicomAsJson.reset(new Json::Value); |
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1020 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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1021 |
|
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
1022 dicom.FromDicomAsJson(*dicomAsJson); |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1023 |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1024 // This map contains the entire JSON, i.e. more than the main DICOM tags |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1025 hasOnlyMainDicomTags = false; |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
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3005
diff
changeset
|
1026 } |
|
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1027 |
|
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1028 if (lookup.IsMatch(dicom)) |
|
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1029 { |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1030 if (skipped < since) |
|
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1031 { |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1032 skipped++; |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1033 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1034 else if (limit != 0 && |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1035 countResults >= limit) |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1036 { |
|
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1037 // Too many results, don't mark as complete |
|
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
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|
1038 complete = false; |
|
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1039 break; |
|
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
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1741
diff
changeset
|
1040 } |
|
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1041 else |
|
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1042 { |
|
3677
4182cde57afb
refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1043 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer || |
|
4182cde57afb
refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1044 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) && |
|
3015
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1045 dicomAsJson.get() == NULL && |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1046 isDicomAsJsonNeeded) |
|
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1047 { |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1048 dicomAsJson.reset(new Json::Value); |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1049 ReadDicomAsJson(*dicomAsJson, instances[i]); |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1050 } |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1051 |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1052 if (hasOnlyMainDicomTags) |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1053 { |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1054 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1055 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1056 } |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1057 else |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1058 { |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1059 // Remove the non-main DICOM tags from "dicom" if Case (2) |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1060 // was used, for consistency with Case (1) |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1061 |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1062 DicomMap mainDicomTags; |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1063 mainDicomTags.ExtractMainDicomTags(dicom); |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1064 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1065 } |
|
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1066 |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1067 countResults ++; |
|
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1068 } |
|
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1069 } |
|
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1070 } |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1071 |
|
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1072 if (complete) |
|
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1073 { |
|
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1074 visitor.MarkAsComplete(); |
|
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1075 } |
|
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1076 |
|
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1077 LOG(INFO) << "Number of matching resources: " << countResults; |
|
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1078 } |
|
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1079 |
| 2626 | 1080 |
|
3015
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1081 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1082 const std::string& publicId, |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1083 MetadataType metadata) |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1084 { |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1085 // This is a backwards-compatibility function, that can |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1086 // reconstruct metadata that were not generated by an older |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1087 // release of Orthanc |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1088 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1089 if (metadata == MetadataType_Instance_SopClassUid || |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1090 metadata == MetadataType_Instance_TransferSyntax) |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1091 { |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1092 if (index_.LookupMetadata(target, publicId, metadata)) |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1093 { |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1094 return true; |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1095 } |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1096 else |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1097 { |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1098 // These metadata are mandatory in DICOM instances, and were |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1099 // introduced in Orthanc 1.2.0. The fact that |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1100 // "LookupMetadata()" has failed indicates that this database |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1101 // comes from an older release of Orthanc. |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1102 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1103 DicomTag tag(0, 0); |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1104 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1105 switch (metadata) |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1106 { |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1107 case MetadataType_Instance_SopClassUid: |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1108 tag = DICOM_TAG_SOP_CLASS_UID; |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1109 break; |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1110 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1111 case MetadataType_Instance_TransferSyntax: |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1112 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1113 break; |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1114 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1115 default: |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1116 throw OrthancException(ErrorCode_InternalError); |
|
abe49ca61cd5
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diff
changeset
|
1117 } |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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diff
changeset
|
1118 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1119 Json::Value dicomAsJson; |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1120 ReadDicomAsJson(dicomAsJson, publicId); |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1121 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
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diff
changeset
|
1122 DicomMap tags; |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1123 tags.FromDicomAsJson(dicomAsJson); |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1124 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
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diff
changeset
|
1125 const DicomValue* value = tags.TestAndGetValue(tag); |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1126 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1127 if (value != NULL && |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1128 !value->IsNull() && |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1129 !value->IsBinary()) |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1130 { |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1131 target = value->GetContent(); |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1132 |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1133 // Store for reuse |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1134 index_.SetMetadata(publicId, metadata, target); |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1135 return true; |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1136 } |
|
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1137 else |
|
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1138 { |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1139 // Should never happen |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1140 return false; |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1141 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1142 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1143 } |
|
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1144 else |
|
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1145 { |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1146 // No backward |
|
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1147 return index_.LookupMetadata(target, publicId, metadata); |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1148 } |
|
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
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diff
changeset
|
1149 } |
|
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parents:
3012
diff
changeset
|
1150 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1151 |
| 2626 | 1152 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
| 1153 const std::string& publicId) | |
| 1154 { | |
| 1155 std::list<std::string> instances; | |
| 1156 GetIndex().GetChildInstances(instances, publicId); | |
| 1157 | |
| 1158 job.Reserve(job.GetInstancesCount() + instances.size()); | |
| 1159 | |
| 1160 for (std::list<std::string>::const_iterator | |
| 1161 it = instances.begin(); it != instances.end(); ++it) | |
| 1162 { | |
| 1163 job.AddInstance(*it); | |
| 1164 } | |
| 1165 } | |
|
2940
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refactoring access to Orthanc configuration
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diff
changeset
|
1166 |
|
4767d36679ed
refactoring access to Orthanc configuration
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diff
changeset
|
1167 |
|
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refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
1168 void ServerContext::SignalUpdatedModalities() |
|
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refactoring access to Orthanc configuration
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diff
changeset
|
1169 { |
|
4767d36679ed
refactoring access to Orthanc configuration
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diff
changeset
|
1170 #if ORTHANC_ENABLE_PLUGINS == 1 |
|
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refactoring access to Orthanc configuration
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diff
changeset
|
1171 if (HasPlugins()) |
|
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refactoring access to Orthanc configuration
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diff
changeset
|
1172 { |
|
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refactoring access to Orthanc configuration
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diff
changeset
|
1173 GetPlugins().SignalUpdatedModalities(); |
|
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refactoring access to Orthanc configuration
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diff
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|
1174 } |
|
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refactoring access to Orthanc configuration
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diff
changeset
|
1175 #endif |
|
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diff
changeset
|
1176 } |
|
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refactoring access to Orthanc configuration
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diff
changeset
|
1177 |
|
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refactoring access to Orthanc configuration
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diff
changeset
|
1178 |
|
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refactoring access to Orthanc configuration
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diff
changeset
|
1179 void ServerContext::SignalUpdatedPeers() |
|
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refactoring access to Orthanc configuration
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changeset
|
1180 { |
|
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refactoring access to Orthanc configuration
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diff
changeset
|
1181 #if ORTHANC_ENABLE_PLUGINS == 1 |
|
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diff
changeset
|
1182 if (HasPlugins()) |
|
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diff
changeset
|
1183 { |
|
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diff
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|
1184 GetPlugins().SignalUpdatedPeers(); |
|
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changeset
|
1185 } |
|
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changeset
|
1186 #endif |
|
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diff
changeset
|
1187 } |
|
3660
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1188 |
|
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1189 |
|
f159b731c47d
IStorageCommitmentFactory
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parents:
3640
diff
changeset
|
1190 IStorageCommitmentFactory::ILookupHandler* |
|
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1191 ServerContext::CreateStorageCommitment(const std::string& jobId, |
|
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1192 const std::string& transactionUid, |
|
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1193 const std::vector<std::string>& sopClassUids, |
|
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1194 const std::vector<std::string>& sopInstanceUids, |
|
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
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diff
changeset
|
1195 const std::string& remoteAet, |
|
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
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diff
changeset
|
1196 const std::string& calledAet) |
|
3660
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IStorageCommitmentFactory
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diff
changeset
|
1197 { |
|
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1198 #if ORTHANC_ENABLE_PLUGINS == 1 |
|
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IStorageCommitmentFactory
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diff
changeset
|
1199 if (HasPlugins()) |
|
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IStorageCommitmentFactory
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diff
changeset
|
1200 { |
|
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1201 return GetPlugins().CreateStorageCommitment( |
|
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
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3660
diff
changeset
|
1202 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
|
3660
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IStorageCommitmentFactory
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diff
changeset
|
1203 } |
|
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1204 #endif |
|
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IStorageCommitmentFactory
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diff
changeset
|
1205 |
|
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diff
changeset
|
1206 return NULL; |
|
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1207 } |
|
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1208 |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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diff
changeset
|
1209 |
|
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diff
changeset
|
1210 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1211 unsigned int frameIndex) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1212 { |
|
3931
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diff
changeset
|
1213 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
|
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new configuration option: BuiltinDecoderTranscoderOrder
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changeset
|
1214 { |
|
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diff
changeset
|
1215 // Use Orthanc's built-in decoder, using the cache to speed-up |
|
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changeset
|
1216 // things on multi-frame images |
|
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changeset
|
1217 ServerContext::DicomCacheLocker locker(*this, publicId); |
|
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diff
changeset
|
1218 std::unique_ptr<ImageAccessor> decoded( |
|
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new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1219 DicomImageDecoder::Decode(locker.GetDicom(), frameIndex)); |
|
e6606d3ec892
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diff
changeset
|
1220 if (decoded.get() != NULL) |
|
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diff
changeset
|
1221 { |
|
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diff
changeset
|
1222 return decoded.release(); |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1223 } |
|
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diff
changeset
|
1224 } |
|
3928
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ServerContext::DecodeDicomFrame()
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diff
changeset
|
1225 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1226 #if ORTHANC_ENABLE_PLUGINS == 1 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1227 if (HasPlugins() && |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1228 GetPlugins().HasCustomImageDecoder()) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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changeset
|
1229 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1230 // TODO: Store the raw buffer in the DicomCacheLocker |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1231 std::string dicomContent; |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1232 ReadDicom(dicomContent, publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1233 std::unique_ptr<ImageAccessor> decoded( |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1234 GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1235 if (decoded.get() != NULL) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1236 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1237 return decoded.release(); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1238 } |
|
3931
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new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1239 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
|
3928
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ServerContext::DecodeDicomFrame()
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diff
changeset
|
1240 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1241 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
|
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1242 << "fallback to the built-in DCMTK decoder"; |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1243 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1244 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1245 #endif |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1246 |
|
3931
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1247 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1248 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1249 ServerContext::DicomCacheLocker locker(*this, publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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3913
diff
changeset
|
1250 return DicomImageDecoder::Decode(locker.GetDicom(), frameIndex); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1251 } |
|
3931
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1252 else |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1253 { |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1254 return NULL; // Built-in decoder is disabled |
|
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1255 } |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1256 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1257 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1258 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1259 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1260 unsigned int frameIndex) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1261 { |
|
3931
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1262 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1263 { |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1264 std::unique_ptr<ImageAccessor> decoded( |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1265 DicomImageDecoder::Decode(dicom.GetParsedDicomFile(), frameIndex)); |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1266 if (decoded.get() != NULL) |
|
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1267 { |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1268 return decoded.release(); |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1269 } |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1270 } |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1271 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1272 #if ORTHANC_ENABLE_PLUGINS == 1 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1273 if (HasPlugins() && |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1274 GetPlugins().HasCustomImageDecoder()) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1275 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1276 std::unique_ptr<ImageAccessor> decoded( |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1277 GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1278 if (decoded.get() != NULL) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1279 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1280 return decoded.release(); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1281 } |
|
3931
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1282 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1283 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1284 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
|
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
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3928
diff
changeset
|
1285 << "fallback to the built-in DCMTK decoder"; |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1286 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1287 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1288 #endif |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1289 |
|
3931
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1290 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1291 { |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1292 return DicomImageDecoder::Decode(dicom.GetParsedDicomFile(), frameIndex); |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1293 } |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1294 else |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1295 { |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1296 return NULL; |
|
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1297 } |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1298 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1299 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1300 |
|
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1301 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
|
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1302 size_t size, |
|
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1303 unsigned int frameIndex) |
|
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1304 { |
|
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1305 DicomInstanceToStore instance; |
|
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1306 instance.SetBuffer(dicom, size); |
|
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1307 return DecodeDicomFrame(instance, frameIndex); |
|
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1308 } |
|
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1309 |
|
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1310 |
|
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1311 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1312 std::string& sopInstanceUid, |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1313 DicomStoreUserConnection& connection, |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1314 const std::string& dicom, |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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parents:
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diff
changeset
|
1315 bool hasMoveOriginator, |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1316 const std::string& moveOriginatorAet, |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1317 uint16_t moveOriginatorId) |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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parents:
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diff
changeset
|
1318 { |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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parents:
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diff
changeset
|
1319 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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diff
changeset
|
1320 |
|
3911
0ef7f4528be2
renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3910
diff
changeset
|
1321 if (!transcodeDicomProtocol_ || |
|
3894
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transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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diff
changeset
|
1322 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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parents:
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diff
changeset
|
1323 { |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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parents:
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diff
changeset
|
1324 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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diff
changeset
|
1325 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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diff
changeset
|
1326 } |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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diff
changeset
|
1327 else |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1328 { |
|
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1329 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), |
|
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
1330 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
|
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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diff
changeset
|
1331 } |
|
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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parents:
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diff
changeset
|
1332 } |
|
3930
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diff
changeset
|
1333 |
|
b99acc213937
transcoder plugins and GDCM transcoding are working
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diff
changeset
|
1334 |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
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3941
diff
changeset
|
1335 bool ServerContext::Transcode(DicomImage& target, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1336 DicomImage& source /* in, "GetParsed()" possibly modified */, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
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diff
changeset
|
1337 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1338 bool allowNewSopInstanceUid) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1339 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
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diff
changeset
|
1340 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1341 { |
|
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
1342 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
|
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1343 { |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1344 return true; |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1345 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
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3941
diff
changeset
|
1346 } |
|
aae045f802f4
preparing simplified interface for IDicomTranscoder
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1347 |
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1348 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1349 if (HasPlugins() && |
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1350 GetPlugins().HasCustomTranscoder()) |
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1351 { |
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1352 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
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1353 { |
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1354 return true; |
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1355 } |
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1356 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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1357 { |
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1358 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
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1359 << "fallback to the built-in DCMTK transcoder"; |
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1360 } |
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1361 } |
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1362 #endif |
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1363 |
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1364 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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1365 { |
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1366 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
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1367 } |
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1368 else |
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1369 { |
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1370 return false; |
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1371 } |
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1372 } |
| 224 | 1373 } |