annotate Core/DicomParsing/ParsedDicomFile.cpp @ 4042:f5c86a00cae0

moving DownloadOrthancFramework.cmake to Resources/CMake/
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 10 Jun 2020 16:44:29 +0200
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34
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35 /*=========================================================================
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36
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37 This file is based on portions of the following project:
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38
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39 Program: GDCM (Grassroots DICOM). A DICOM library
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40 Module: http://gdcm.sourceforge.net/Copyright.html
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41
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42 Copyright (c) 2006-2011 Mathieu Malaterre
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43 Copyright (c) 1993-2005 CREATIS
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44 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image)
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45 All rights reserved.
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47 Redistribution and use in source and binary forms, with or without
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48 modification, are permitted provided that the following conditions are met:
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50 * Redistributions of source code must retain the above copyright notice,
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51 this list of conditions and the following disclaimer.
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52
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53 * Redistributions in binary form must reproduce the above copyright notice,
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54 this list of conditions and the following disclaimer in the documentation
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55 and/or other materials provided with the distribution.
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56
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57 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any
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58 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to
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59 endorse or promote products derived from this software without specific
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60 prior written permission.
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62 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
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63 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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64 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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65 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
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66 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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67 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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68 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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69 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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70 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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71 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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73 =========================================================================*/
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74
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75
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76 #include "../PrecompiledHeaders.h"
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77
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78 #ifndef NOMINMAX
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79 #define NOMINMAX
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80 #endif
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81
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82 #include "ParsedDicomFile.h"
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83
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84 #include "FromDcmtkBridge.h"
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85 #include "Internals/DicomFrameIndex.h"
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86 #include "ToDcmtkBridge.h"
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87
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88 #include "../Images/PamReader.h"
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89 #include "../Logging.h"
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90 #include "../OrthancException.h"
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91 #include "../Toolbox.h"
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93 #if ORTHANC_SANDBOXED == 0
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94 # include "../SystemToolbox.h"
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95 #endif
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97 #if ORTHANC_ENABLE_JPEG == 1
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98 # include "../Images/JpegReader.h"
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99 #endif
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100
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101 #if ORTHANC_ENABLE_PNG == 1
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102 # include "../Images/PngReader.h"
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103 #endif
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104
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105 #include <list>
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106 #include <limits>
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107
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108 #include <boost/lexical_cast.hpp>
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109
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110 #include <dcmtk/dcmdata/dcchrstr.h>
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111 #include <dcmtk/dcmdata/dcdicent.h>
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112 #include <dcmtk/dcmdata/dcdict.h>
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113 #include <dcmtk/dcmdata/dcfilefo.h>
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114 #include <dcmtk/dcmdata/dcuid.h>
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115 #include <dcmtk/dcmdata/dcmetinf.h>
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116 #include <dcmtk/dcmdata/dcdeftag.h>
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117
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118 #include <dcmtk/dcmdata/dcvrae.h>
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119 #include <dcmtk/dcmdata/dcvras.h>
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120 #include <dcmtk/dcmdata/dcvrcs.h>
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121 #include <dcmtk/dcmdata/dcvrda.h>
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122 #include <dcmtk/dcmdata/dcvrds.h>
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123 #include <dcmtk/dcmdata/dcvrdt.h>
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124 #include <dcmtk/dcmdata/dcvrfd.h>
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125 #include <dcmtk/dcmdata/dcvrfl.h>
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126 #include <dcmtk/dcmdata/dcvris.h>
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127 #include <dcmtk/dcmdata/dcvrlo.h>
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128 #include <dcmtk/dcmdata/dcvrlt.h>
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129 #include <dcmtk/dcmdata/dcvrpn.h>
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130 #include <dcmtk/dcmdata/dcvrsh.h>
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131 #include <dcmtk/dcmdata/dcvrsl.h>
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132 #include <dcmtk/dcmdata/dcvrss.h>
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133 #include <dcmtk/dcmdata/dcvrst.h>
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134 #include <dcmtk/dcmdata/dcvrtm.h>
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135 #include <dcmtk/dcmdata/dcvrui.h>
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136 #include <dcmtk/dcmdata/dcvrul.h>
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137 #include <dcmtk/dcmdata/dcvrus.h>
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138 #include <dcmtk/dcmdata/dcvrut.h>
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139 #include <dcmtk/dcmdata/dcpixel.h>
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140 #include <dcmtk/dcmdata/dcpixseq.h>
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141 #include <dcmtk/dcmdata/dcpxitem.h>
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142
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143
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144 #include <boost/math/special_functions/round.hpp>
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145 #include <dcmtk/dcmdata/dcostrmb.h>
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146 #include <boost/algorithm/string/predicate.hpp>
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147
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148
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149 #if DCMTK_VERSION_NUMBER <= 360
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150 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax
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151 #endif
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152
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153
790
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154
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155 namespace Orthanc
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156 {
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157 struct ParsedDicomFile::PImpl
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158 {
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159 std::unique_ptr<DcmFileFormat> file_;
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160 std::unique_ptr<DicomFrameIndex> frameIndex_;
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161 };
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162
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163
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164 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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165 static void ParseTagAndGroup(DcmTagKey& key,
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166 const std::string& tag)
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167 {
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168 DicomTag t = FromDcmtkBridge::ParseTag(tag);
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169 key = DcmTagKey(t.GetGroup(), t.GetElement());
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170 }
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171
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172
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173 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData,
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174 E_TransferSyntax transferSyntax)
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175 {
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176 DcmPixelSequence* pixelSequence = NULL;
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177 if (pixelData.getEncapsulatedRepresentation
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178 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
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179 {
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180 return pixelSequence->card();
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181 }
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182 else
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183 {
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184 return 1;
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185 }
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186 }
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187
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188
790
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189 static void SendPathValueForDictionary(RestApiOutput& output,
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190 DcmItem& dicom)
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191 {
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192 Json::Value v = Json::arrayValue;
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193
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194 for (unsigned long i = 0; i < dicom.card(); i++)
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195 {
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196 DcmElement* element = dicom.getElement(i);
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197 if (element)
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198 {
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199 char buf[16];
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200 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag());
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201 v.append(buf);
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202 }
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203 }
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204
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205 output.AnswerJson(v);
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206 }
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207
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208
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209 static void SendSequence(RestApiOutput& output,
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210 DcmSequenceOfItems& sequence)
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211 {
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212 // This element is a sequence
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213 Json::Value v = Json::arrayValue;
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214
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215 for (unsigned long i = 0; i < sequence.card(); i++)
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216 {
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217 v.append(boost::lexical_cast<std::string>(i));
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218 }
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219
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220 output.AnswerJson(v);
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221 }
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222
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223
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224 namespace
790
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225 {
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226 class DicomFieldStream : public IHttpStreamAnswer
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227 {
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228 private:
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229 DcmElement& element_;
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230 uint32_t length_;
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231 uint32_t offset_;
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232 std::string chunk_;
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233 size_t chunkSize_;
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234
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235 public:
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236 DicomFieldStream(DcmElement& element,
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237 E_TransferSyntax transferSyntax) :
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238 element_(element),
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239 length_(element.getLength(transferSyntax)),
1616
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240 offset_(0),
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241 chunkSize_(0)
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242 {
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243 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB
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244 chunk_.resize(CHUNK_SIZE);
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245 }
790
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246
1523
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247 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/,
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diff changeset
248 bool /*deflateAllowed*/)
2924
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249 ORTHANC_OVERRIDE
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250 {
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251 // No support for compression
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252 return HttpCompression_None;
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253 }
790
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254
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255 virtual bool HasContentFilename(std::string& filename) ORTHANC_OVERRIDE
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256 {
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257 return false;
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258 }
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259
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260 virtual std::string GetContentType() ORTHANC_OVERRIDE
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261 {
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262 return EnumerationToString(MimeType_Binary);
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263 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264
2924
22524fd06225 macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2910
diff changeset
265 virtual uint64_t GetContentLength() ORTHANC_OVERRIDE
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 {
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
267 return length_;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 }
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
269
2924
22524fd06225 macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2910
diff changeset
270 virtual bool ReadNextChunk() ORTHANC_OVERRIDE
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 {
1520
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1519
diff changeset
272 assert(offset_ <= length_);
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
273
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
274 if (offset_ == length_)
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
275 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
276 return false;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
277 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
278 else
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
279 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
280 if (length_ - offset_ < chunk_.size())
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
281 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
282 chunkSize_ = length_ - offset_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
283 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
284 else
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
285 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
286 chunkSize_ = chunk_.size();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
287 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
288
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
289 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
290
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
291 offset_ += chunkSize_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
292
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
293 if (!cond.good())
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
294 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
295 throw OrthancException(ErrorCode_InternalError,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
296 "Error while sending a DICOM field: " +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
297 std::string(cond.text()));
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
298 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
299
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
300 return true;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
301 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 }
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
303
2924
22524fd06225 macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2910
diff changeset
304 virtual const char *GetChunkContent() ORTHANC_OVERRIDE
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
305 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
306 return chunk_.c_str();
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
307 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
308
2924
22524fd06225 macros ORTHANC_OVERRIDE and ORTHANC_FINAL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2910
diff changeset
309 virtual size_t GetChunkSize() ORTHANC_OVERRIDE
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
310 {
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
311 return chunkSize_;
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
312 }
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
313 };
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 static bool AnswerPixelData(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 DcmItem& dicom,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319 E_TransferSyntax transferSyntax,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 const std::string* blockUri)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(),
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 DICOM_TAG_PIXEL_DATA.GetElement());
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 DcmElement *element = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 if (!dicom.findAndGetElement(k, element).good() ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 element == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 return false;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 try
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 if (blockUri == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 {
1913
41e402cd7b3a do not generate RC files for non-Windows builds
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1902
diff changeset
337 // The user asks how many blocks are present in this pixel data
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340 Json::Value result(Json::arrayValue);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 for (unsigned int i = 0; i < blocks; i++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343 result.append(boost::lexical_cast<std::string>(i));
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 output.AnswerJson(result);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
348 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
349
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
350
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
351 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
352
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
353 if (block < GetPixelDataBlockCount(pixelData, transferSyntax))
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
354 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 DcmPixelSequence* pixelSequence = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 if (pixelData.getEncapsulatedRepresentation
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
357 (transferSyntax, NULL, pixelSequence).good() && pixelSequence)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 // This is the case for JPEG transfer syntaxes
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 if (block < pixelSequence->card())
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362 DcmPixelItem* pixelItem = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 if (pixelItem->getLength() == 0)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 {
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
367 output.AnswerBuffer(NULL, 0, MimeType_Binary);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 Uint8* buffer = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 if (pixelItem->getUint8Array(buffer).good() && buffer)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 {
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
374 output.AnswerBuffer(buffer, pixelItem->getLength(), MimeType_Binary);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 return true;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
379 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
380 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
381 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 // This is the case for raw, uncompressed image buffers
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
383 assert(*blockUri == "0");
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
384 DicomFieldStream stream(*element, transferSyntax);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
385 output.AnswerStream(stream);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389 catch (boost::bad_lexical_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 // The URI entered by the user is not a number
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393 catch (std::bad_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
394 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 // This should never happen
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 return false;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
402 static void SendPathValueForLeaf(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
403 const std::string& tag,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404 DcmItem& dicom,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 E_TransferSyntax transferSyntax)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 DcmTagKey k;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 ParseTagAndGroup(k, tag);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410 DcmSequenceOfItems* sequence = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 if (dicom.findAndGetSequence(k, sequence).good() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 sequence != NULL &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 sequence->getVR() == EVR_SQ)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 SendSequence(output, *sequence);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 DcmElement* element = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420 if (dicom.findAndGetElement(k, element).good() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421 element != NULL &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
422 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
423 element->getVR() != EVR_SQ)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
424 {
1519
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
425 DicomFieldStream stream(*element, transferSyntax);
8bd0d897763f refactoring: IHttpStreamAnswer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
426 output.AnswerStream(stream);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
428 }
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
429 #endif
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
431
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
432 static inline uint16_t GetCharValue(char c)
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
433 {
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
434 if (c >= '0' && c <= '9')
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
435 return c - '0';
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
436 else if (c >= 'a' && c <= 'f')
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
437 return c - 'a' + 10;
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
438 else if (c >= 'A' && c <= 'F')
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
439 return c - 'A' + 10;
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
440 else
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
441 return 0;
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
442 }
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
443
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
444
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
445 static inline uint16_t GetTagValue(const char* c)
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
446 {
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
447 return ((GetCharValue(c[0]) << 12) +
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
448 (GetCharValue(c[1]) << 8) +
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
449 (GetCharValue(c[2]) << 4) +
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
450 GetCharValue(c[3]));
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
451 }
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
452
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
453
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
454 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
455 void ParsedDicomFile::SendPathValue(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
456 const UriComponents& uri)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
458 DcmItem* dicom = GetDcmtkObject().getDataset();
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
459 E_TransferSyntax transferSyntax = GetDcmtkObject().getDataset()->getCurrentXfer();
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 // Special case: Accessing the pixel data
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 if (uri.size() == 1 ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 uri.size() == 2)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465 DcmTagKey tag;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 ParseTagAndGroup(tag, uri[0]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() &&
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement())
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
473 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
474 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
476 // Go down in the tag hierarchy according to the URI
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 for (size_t pos = 0; pos < uri.size() / 2; pos++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
478 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
479 size_t index;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 try
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 catch (boost::bad_lexical_cast&)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 DcmTagKey k;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 DcmItem *child = NULL;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 ParseTagAndGroup(k, uri[2 * pos]);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 if (!dicom->findAndGetSequenceItem(k, child, index).good() ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 child == NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 return;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 dicom = child;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
500
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 // We have reached the end of the URI
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 if (uri.size() % 2 == 0)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 SendPathValueForDictionary(output, *dicom);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 }
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
511 #endif
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
512
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
514 void ParsedDicomFile::Remove(const DicomTag& tag)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
516 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
517
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518 DcmTagKey key(tag.GetGroup(), tag.GetElement());
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
519 DcmElement* element = GetDcmtkObject().getDataset()->remove(key);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520 if (element != NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 delete element;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
526
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
527 void ParsedDicomFile::Clear(const DicomTag& tag,
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
528 bool onlyIfExists)
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
529 {
2797
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
530 if (tag.GetElement() == 0x0000)
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
531 {
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
532 // Prevent manually modifying generic group length tags: This is
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
533 // handled by DCMTK serialization
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
534 return;
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
535 }
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
536
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
537 InvalidateCache();
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
538
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
539 DcmItem* dicom = GetDcmtkObject().getDataset();
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
540 DcmTagKey key(tag.GetGroup(), tag.GetElement());
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
541
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
542 if (onlyIfExists &&
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
543 !dicom->tagExists(key))
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
544 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
545 // The tag is non-existing, do not clear it
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
546 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
547 else
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
548 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
549 if (!dicom->insertEmptyElement(key, OFTrue /* replace old value */).good())
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
550 {
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
551 throw OrthancException(ErrorCode_InternalError);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
552 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
553 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
554 }
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
555
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
556
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
557 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
558 {
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
559 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
560
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
561 DcmDataset& dataset = *GetDcmtkObject().getDataset();
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
562
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
563 // Loop over the dataset to detect its private tags
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
564 typedef std::list<DcmElement*> Tags;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
565 Tags privateTags;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
566
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
567 for (unsigned long i = 0; i < dataset.card(); i++)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
568 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
569 DcmElement* element = dataset.getElement(i);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
570 DcmTag tag(element->getTag());
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
571
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
572 // Is this a private tag?
1694
06d579e82bb8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1693
diff changeset
573 if (tag.isPrivate())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
574 {
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
575 bool remove = true;
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
576
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
577 // Check whether this private tag is to be kept
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
578 if (toKeep != NULL)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
579 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
580 DicomTag tmp = FromDcmtkBridge::Convert(tag);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
581 if (toKeep->find(tmp) != toKeep->end())
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
582 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
583 remove = false; // Keep it
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
584 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
585 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
586
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
587 if (remove)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
588 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
589 privateTags.push_back(element);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
590 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
591 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
592 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
593
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
594 // Loop over the detected private tags to remove them
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
595 for (Tags::iterator it = privateTags.begin();
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
596 it != privateTags.end(); ++it)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
597 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
598 DcmElement* tmp = dataset.remove(*it);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
599 if (tmp != NULL)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
601 delete tmp;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
602 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
603 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
604 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
605
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
606
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
607 static void InsertInternal(DcmDataset& dicom,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
608 DcmElement* element)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
609 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
610 OFCondition cond = dicom.insert(element, false, false);
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
611 if (!cond.good())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
612 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
613 // This field already exists
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
614 delete element;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
615 throw OrthancException(ErrorCode_InternalError);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
617 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
618
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
619
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
620 void ParsedDicomFile::Insert(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
621 const Json::Value& value,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
622 bool decodeDataUriScheme,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
623 const std::string& privateCreator)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
624 {
2797
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
625 if (tag.GetElement() == 0x0000)
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
626 {
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
627 // Prevent manually modifying generic group length tags: This is
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
628 // handled by DCMTK serialization
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
629 return;
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
630 }
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
631
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
632 if (GetDcmtkObject().getDataset()->tagExists(ToDcmtkBridge::Convert(tag)))
1980
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
633 {
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
634 throw OrthancException(ErrorCode_AlreadyExistingTag);
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
635 }
ebce5f456b8e new error code: ErrorCode_AlreadyExistingTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1979
diff changeset
636
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
637 if (decodeDataUriScheme &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
638 value.type() == Json::stringValue &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
639 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT ||
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
640 tag == DICOM_TAG_PIXEL_DATA))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
641 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
642 if (EmbedContentInternal(value.asString()))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
643 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
644 return;
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
645 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
646 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
647
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
648 InvalidateCache();
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
649
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
650 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
651 Encoding encoding = DetectEncoding(hasCodeExtensions);
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
652 std::unique_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator));
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
653 InsertInternal(*GetDcmtkObject().getDataset(), element.release());
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
654 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
655
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
656
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
657 void ParsedDicomFile::ReplacePlainString(const DicomTag& tag,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
658 const std::string& utf8Value)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
659 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
660 if (tag.IsPrivate())
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
661 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
662 throw OrthancException(ErrorCode_InternalError,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
663 "Cannot apply this function to private tags: " + tag.Format());
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
664 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
665 else
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
666 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
667 Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
668 "" /* not a private tag, so no private creator */);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
669 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
670 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
671
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
672
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
673 void ParsedDicomFile::SetIfAbsent(const DicomTag& tag,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
674 const std::string& utf8Value)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
675 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
676 std::string currentValue;
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
677 if (!GetTagValue(currentValue, tag))
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
678 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
679 ReplacePlainString(tag, utf8Value);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
680 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
681 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
682
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
683
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
684 static bool CanReplaceProceed(DcmDataset& dicom,
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
685 const DcmTagKey& tag,
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
686 DicomReplaceMode mode)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
687 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
688 if (dicom.findAndDeleteElement(tag).good())
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
689 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
690 // This tag was existing, it has been deleted
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
691 return true;
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
692 }
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
693 else
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
694 {
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
695 // This tag was absent, act wrt. the specified "mode"
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
696 switch (mode)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
697 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
698 case DicomReplaceMode_InsertIfAbsent:
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
699 return true;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
700
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
701 case DicomReplaceMode_ThrowIfAbsent:
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
702 throw OrthancException(ErrorCode_InexistentItem);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
703
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
704 case DicomReplaceMode_IgnoreIfAbsent:
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
705 return false;
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
706
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
707 default:
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
708 throw OrthancException(ErrorCode_ParameterOutOfRange);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
709 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
710 }
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
711 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
712
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
713
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
714 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
715 const std::string& utf8Value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
716 bool decodeDataUriScheme)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
717 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
718 if (tag != DICOM_TAG_SOP_CLASS_UID &&
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
719 tag != DICOM_TAG_SOP_INSTANCE_UID)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
720 {
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
721 return;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
722 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
723
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
724 std::string binary;
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
725 const std::string* decoded = &utf8Value;
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
726
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
727 if (decodeDataUriScheme &&
2905
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2889
diff changeset
728 boost::starts_with(utf8Value, URI_SCHEME_PREFIX_BINARY))
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
729 {
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
730 std::string mime;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
731 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value))
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
732 {
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
733 throw OrthancException(ErrorCode_BadFileFormat);
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
734 }
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
735
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
736 decoded = &binary;
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
737 }
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
738 else
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
739 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
740 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
741 Encoding encoding = DetectEncoding(hasCodeExtensions);
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
742 if (encoding != Encoding_Utf8)
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
743 {
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
744 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding);
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
745 decoded = &binary;
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
746 }
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
747 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
748
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
749 /**
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
750 * dcmodify will automatically correct 'Media Storage SOP Class
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
751 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
752 * you make changes to the related tags in the dataset ('SOP Class
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
753 * UID' and 'SOP Instance UID') via insert or modify mode
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
754 * options. You can disable this behaviour by using the -nmu
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
755 * option.
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
756 **/
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
757
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
758 if (tag == DICOM_TAG_SOP_CLASS_UID)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
759 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
760 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
761 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
762
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
763 if (tag == DICOM_TAG_SOP_INSTANCE_UID)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
764 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
765 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
766 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
767 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
768
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
769
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
770 void ParsedDicomFile::Replace(const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1694
diff changeset
771 const std::string& utf8Value,
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
772 bool decodeDataUriScheme,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
773 DicomReplaceMode mode,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
774 const std::string& privateCreator)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
775 {
2797
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
776 if (tag.GetElement() == 0x0000)
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
777 {
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
778 // Prevent manually modifying generic group length tags: This is
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
779 // handled by DCMTK serialization
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
780 return;
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
781 }
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
782
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
783 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
784
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
785 DcmDataset& dicom = *GetDcmtkObject().getDataset();
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
786 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
787 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
788 // Either the tag was previously existing (and now removed), or
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
789 // the replace mode was set to "InsertIfAbsent"
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
790
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
791 if (decodeDataUriScheme &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
792 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT ||
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
793 tag == DICOM_TAG_PIXEL_DATA))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
794 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
795 if (EmbedContentInternal(utf8Value))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
796 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
797 return;
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
798 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
799 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
800
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
801 std::unique_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag, privateCreator));
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
802
3368
3cd94bc66731 allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
803 if (!utf8Value.empty())
3cd94bc66731 allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
804 {
3cd94bc66731 allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
805 bool hasCodeExtensions;
3cd94bc66731 allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
806 Encoding encoding = DetectEncoding(hasCodeExtensions);
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
807 FromDcmtkBridge::FillElementWithString(*element, utf8Value, decodeDataUriScheme, encoding);
3368
3cd94bc66731 allow creating ParsedDicomFile with empty DICOM elements
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
808 }
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
809
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
810 InsertInternal(dicom, element.release());
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
811 UpdateStorageUid(tag, utf8Value, false);
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
812 }
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
813 }
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
814
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
815
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
816 void ParsedDicomFile::Replace(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
817 const Json::Value& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
818 bool decodeDataUriScheme,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
819 DicomReplaceMode mode,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
820 const std::string& privateCreator)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
821 {
2797
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
822 if (tag.GetElement() == 0x0000)
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
823 {
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
824 // Prevent manually modifying generic group length tags: This is
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
825 // handled by DCMTK serialization
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
826 return;
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
827 }
9a0c6a046cc2 Fix handling of incoming C-FIND queries containing Generic Group Length (*, 0x0000)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
828
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
829 InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
830
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
831 DcmDataset& dicom = *GetDcmtkObject().getDataset();
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
832 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
833 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
834 // Either the tag was previously existing (and now removed), or
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
835 // the replace mode was set to "InsertIfAbsent"
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
836
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
837 if (decodeDataUriScheme &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
838 value.type() == Json::stringValue &&
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
839 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT ||
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
840 tag == DICOM_TAG_PIXEL_DATA))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
841 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
842 if (EmbedContentInternal(value.asString()))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
843 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
844 return;
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
845 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
846 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
847
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
848 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
849 Encoding encoding = DetectEncoding(hasCodeExtensions);
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
850 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding, privateCreator));
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
851
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
852 if (tag == DICOM_TAG_SOP_CLASS_UID ||
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
853 tag == DICOM_TAG_SOP_INSTANCE_UID)
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
854 {
1979
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
855 if (value.type() != Json::stringValue)
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
856 {
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
857 throw OrthancException(ErrorCode_BadParameterType);
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
858 }
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
859
9e0f408db796 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1956
diff changeset
860 UpdateStorageUid(tag, value.asString(), decodeDataUriScheme);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1689
diff changeset
861 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
862 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
863 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
864
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
865
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
866 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
867 void ParsedDicomFile::Answer(RestApiOutput& output)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
868 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
869 std::string serialized;
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
870 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *GetDcmtkObject().getDataset()))
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
871 {
3901
603a7b86fa5f route "/instances/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3883
diff changeset
872 output.AnswerBuffer(serialized, MimeType_Dicom);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
873 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
874 }
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
875 #endif
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
876
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
877
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
878 bool ParsedDicomFile::GetTagValue(std::string& value,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
879 const DicomTag& tag)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
880 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
881 DcmTagKey k(tag.GetGroup(), tag.GetElement());
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
882 DcmDataset& dataset = *GetDcmtkObject().getDataset();
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
883
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
884 if (tag.IsPrivate() ||
1655
e40fd0d925c5 /tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1641
diff changeset
885 FromDcmtkBridge::IsUnknownTag(tag) ||
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
886 tag == DICOM_TAG_PIXEL_DATA ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
887 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
888 {
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
889 const Uint8* data = NULL; // This is freed in the destructor of the dataset
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
890 long unsigned int count = 0;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
891
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
892 if (dataset.findAndGetUint8Array(k, data, &count).good())
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
893 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
894 if (count > 0)
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
895 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
896 assert(data != NULL);
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
897 value.assign(reinterpret_cast<const char*>(data), count);
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
898 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
899 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
900 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
901 value.clear();
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
902 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
903
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
904 return true;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
905 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
906 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
907 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
908 return false;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
909 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
910 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
911 else
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
912 {
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
913 DcmElement* element = NULL;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
914 if (!dataset.findAndGetElement(k, element).good() ||
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
915 element == NULL)
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
916 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
917 return false;
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
918 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
919
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
920 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
921 Encoding encoding = DetectEncoding(hasCodeExtensions);
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
922
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
923 std::set<DicomTag> tmp;
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
924 std::unique_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
925 (*element, DicomToJsonFlags_Default,
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
926 0, encoding, hasCodeExtensions, tmp));
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
927
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
928 if (v.get() == NULL ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
929 v->IsNull())
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
930 {
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
931 value = "";
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
932 }
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
933 else
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
934 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
935 // TODO v->IsBinary()
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1736
diff changeset
936 value = v->GetContent();
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
937 }
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
938
1307
f796207e3df1 Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
939 return true;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
940 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
941 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
942
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
943
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
944 DicomInstanceHasher ParsedDicomFile::GetHasher()
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
945 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
946 std::string patientId, studyUid, seriesUid, instanceUid;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
947
3446
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
948 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID))
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
949 {
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
950 /**
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
951 * If "PatientID" is absent, be tolerant by considering it
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
952 * equals the empty string, then proceed. In Orthanc <= 1.5.6,
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
953 * an exception "Bad file format" was generated.
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
954 * https://groups.google.com/d/msg/orthanc-users/aphG_h1AHVg/rfOTtTPTAgAJ
3853
ba53d51ffa9a leaving bitbucket
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3745
diff changeset
955 * https://hg.orthanc-server.com/orthanc/rev/4c45e018bd3de3cfa21d6efc6734673aaaee4435
3446
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
956 **/
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
957 patientId.clear();
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
958 }
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
959
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
960 if (!GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) ||
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
961 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) ||
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
962 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID))
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
963 {
3446
52da6e9335dd Allow anonymizing/modifying instances without the PatientID tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3430
diff changeset
964 throw OrthancException(ErrorCode_BadFileFormat, "missing StudyInstanceUID, SeriesInstanceUID or SOPInstanceUID");
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
965 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
966
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
967 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
968 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
969
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
970
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
971 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
972 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
973 FromDcmtkBridge::SaveToMemoryBuffer(buffer, *GetDcmtkObject().getDataset());
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
974 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
975
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
976
2512
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
977 #if ORTHANC_SANDBOXED == 0
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
978 void ParsedDicomFile::SaveToFile(const std::string& path)
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
979 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
980 // TODO Avoid using a temporary memory buffer, write directly on disk
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
981 std::string content;
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
982 SaveToMemoryBuffer(content);
2140
aa4b8895cd23 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2131
diff changeset
983 SystemToolbox::WriteFile(content, path);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
984 }
2512
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
985 #endif
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
986
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
987
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
988 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl)
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
989 {
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
990 pimpl_->file_.reset(new DcmFileFormat);
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
991
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
992 if (createIdentifiers)
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
993 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
994 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
995 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
996 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
997 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
998 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
999 }
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1000
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1001
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1002 void ParsedDicomFile::CreateFromDicomMap(const DicomMap& source,
3276
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1003 Encoding defaultEncoding,
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3948
diff changeset
1004 bool permissive,
4035
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1005 const std::string& defaultPrivateCreator,
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1006 const std::map<uint16_t, std::string>& privateCreators)
1786
164d78911382 primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1781
diff changeset
1007 {
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1008 pimpl_->file_.reset(new DcmFileFormat);
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3948
diff changeset
1009 InvalidateCache();
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1010
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1011 const DicomValue* tmp = source.TestAndGetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET);
2445
6e5bc5c6d1a4 Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2409
diff changeset
1012
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1013 if (tmp == NULL)
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1014 {
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1015 SetEncoding(defaultEncoding);
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1016 }
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1017 else if (tmp->IsBinary())
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1018 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1019 throw OrthancException(ErrorCode_ParameterOutOfRange,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1020 "Invalid binary string in the SpecificCharacterSet (0008,0005) tag");
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1021 }
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1022 else if (tmp->IsNull() ||
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1023 tmp->GetContent().empty())
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1024 {
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1025 SetEncoding(defaultEncoding);
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1026 }
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1027 else
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1028 {
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1029 Encoding encoding;
2445
6e5bc5c6d1a4 Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2409
diff changeset
1030
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1031 if (GetDicomEncoding(encoding, tmp->GetContent().c_str()))
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1032 {
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1033 SetEncoding(encoding);
2445
6e5bc5c6d1a4 Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2409
diff changeset
1034 }
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1035 else
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1036 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1037 throw OrthancException(ErrorCode_ParameterOutOfRange,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1038 "Unsupported value for the SpecificCharacterSet (0008,0005) tag: \"" +
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1039 tmp->GetContent() + "\"");
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1040 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1041 }
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1042
3651
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1043 for (DicomMap::Content::const_iterator
46cb00e4adbb DicomMap::DumpMainDicomTags() and DicomMap::ParseMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1044 it = source.content_.begin(); it != source.content_.end(); ++it)
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1045 {
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1046 if (it->first != DICOM_TAG_SPECIFIC_CHARACTER_SET &&
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1047 !it->second->IsNull())
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1048 {
3276
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1049 try
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1050 {
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3948
diff changeset
1051 // Same as "ReplacePlainString()", but with support for private creator
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3948
diff changeset
1052 const std::string& utf8Value = it->second->GetContent();
4035
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1053
4039
fa35465175b8 fix for msvc2008
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4035
diff changeset
1054 std::map<uint16_t, std::string>::const_iterator found = privateCreators.find(it->first.GetGroup());
fa35465175b8 fix for msvc2008
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4035
diff changeset
1055
fa35465175b8 fix for msvc2008
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4035
diff changeset
1056 if (it->first.IsPrivate() &&
fa35465175b8 fix for msvc2008
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4035
diff changeset
1057 found != privateCreators.end())
4035
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1058 {
4039
fa35465175b8 fix for msvc2008
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4035
diff changeset
1059 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, found->second);
4035
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1060 }
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1061 else
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1062 {
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1063 Replace(it->first, utf8Value, false, DicomReplaceMode_InsertIfAbsent, defaultPrivateCreator);
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1064 }
3276
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1065 }
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1066 catch (OrthancException&)
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1067 {
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1068 if (!permissive)
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1069 {
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1070 throw;
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1071 }
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1072 }
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2797
diff changeset
1073 }
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1074 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1075 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1076
4035
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1077 ParsedDicomFile::ParsedDicomFile(const DicomMap& map,
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1078 Encoding defaultEncoding,
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1079 bool permissive) :
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1080 pimpl_(new PImpl)
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1081 {
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1082 std::map<uint16_t, std::string> noPrivateCreators;
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1083 CreateFromDicomMap(map, defaultEncoding, permissive, "" /* no default private creator */, noPrivateCreators);
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1084 }
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1085
1787
1b1d5470233f refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
1086
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1087 ParsedDicomFile::ParsedDicomFile(const DicomMap& map,
3276
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
1088 Encoding defaultEncoding,
4007
884b55ce01f6 Private tags returned by C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3948
diff changeset
1089 bool permissive,
4035
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1090 const std::string& defaultPrivateCreator,
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1091 const std::map<uint16_t, std::string>& privateCreators) :
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1092 pimpl_(new PImpl)
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1093 {
4035
cc6ed76bba27 added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents: 4013
diff changeset
1094 CreateFromDicomMap(map, defaultEncoding, permissive, defaultPrivateCreator, privateCreators);
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1095 }
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1096
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
1097
1800
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
1098 ParsedDicomFile::ParsedDicomFile(const void* content,
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
1099 size_t size) : pimpl_(new PImpl)
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1100 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1101 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1102 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1103
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
1104 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl)
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1105 {
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1106 if (content.size() == 0)
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1107 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1108 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1109 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1110 else
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1111 {
1935
e251606c1433 FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
1112 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size()));
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1113 }
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
1114 }
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
1115
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
1116
2521
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
1117 ParsedDicomFile::ParsedDicomFile(ParsedDicomFile& other,
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
1118 bool keepSopInstanceUid) :
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
1119 pimpl_(new PImpl)
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
1120 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1121 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.GetDcmtkObject().clone()));
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1122
2521
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
1123 if (!keepSopInstanceUid)
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
1124 {
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
1125 // Create a new instance-level identifier
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
1126 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance));
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
1127 }
792
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
1128 }
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
1129
111a1738e11e refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 791
diff changeset
1130
1788
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1131 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl)
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1132 {
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1133 pimpl_->file_.reset(new DcmFileFormat(&dicom));
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1134 }
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1135
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1136
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1137 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl)
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1138 {
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1139 pimpl_->file_.reset(new DcmFileFormat(dicom));
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1140 }
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1141
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
1142
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3901
diff changeset
1143 ParsedDicomFile::ParsedDicomFile(DcmFileFormat* dicom) : pimpl_(new PImpl)
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3901
diff changeset
1144 {
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3901
diff changeset
1145 pimpl_->file_.reset(dicom); // No cloning
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3901
diff changeset
1146 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3901
diff changeset
1147
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3901
diff changeset
1148
1824
b530c3dfe2a6 refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
1149 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
1150 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1151 if (pimpl_->file_.get() == NULL)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1152 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1153 throw OrthancException(ErrorCode_BadSequenceOfCalls,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1154 "ReleaseDcmtkObject() was called");
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1155 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1156 else
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1157 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1158 return *pimpl_->file_;
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1159 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1160 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1161
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1162
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1163 DcmFileFormat* ParsedDicomFile::ReleaseDcmtkObject()
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1164 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1165 if (pimpl_->file_.get() == NULL)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1166 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1167 throw OrthancException(ErrorCode_BadSequenceOfCalls,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1168 "ReleaseDcmtkObject() was called");
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1169 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1170 else
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1171 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1172 pimpl_->frameIndex_.reset(NULL);
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1173 return pimpl_->file_.release();
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1174 }
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
1175 }
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
1176
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
1177
2521
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
1178 ParsedDicomFile* ParsedDicomFile::Clone(bool keepSopInstanceUid)
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
1179 {
2521
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
1180 return new ParsedDicomFile(*this, keepSopInstanceUid);
793
145604a97914 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 792
diff changeset
1181 }
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1182
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1183
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1184 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme)
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1185 {
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1186 std::string mimeString, content;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1187 if (!Toolbox::DecodeDataUriScheme(mimeString, content, dataUriScheme))
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
1188 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1189 return false;
1981
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
1190 }
4b545a8b1f95 return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1980
diff changeset
1191
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1192 Toolbox::ToLowerCase(mimeString);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1193 MimeType mime = StringToMimeType(mimeString);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1194
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1195 switch (mime)
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1196 {
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1197 case MimeType_Png:
2380
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
1198 #if ORTHANC_ENABLE_PNG == 1
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1199 EmbedImage(mime, content);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1200 break;
2380
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
1201 #else
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1202 throw OrthancException(ErrorCode_NotImplemented,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1203 "Orthanc was compiled without support of PNG");
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1204 #endif
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1205
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1206 case MimeType_Jpeg:
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1207 #if ORTHANC_ENABLE_JPEG == 1
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1208 EmbedImage(mime, content);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1209 break;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1210 #else
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1211 throw OrthancException(ErrorCode_NotImplemented,
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1212 "Orthanc was compiled without support of JPEG");
2380
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
1213 #endif
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1214
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1215 case MimeType_Pam:
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1216 EmbedImage(mime, content);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1217 break;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1218
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1219 case MimeType_Pdf:
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1220 EmbedPdf(content);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1221 break;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1222
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1223 default:
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1224 throw OrthancException(ErrorCode_NotImplemented,
2989
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2954
diff changeset
1225 "Unsupported MIME type for the content of a new DICOM file: " +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2954
diff changeset
1226 std::string(EnumerationToString(mime)));
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
1227 }
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1228
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1229 return true;
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1230 }
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1231
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1232
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1233 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme)
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1234 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1235 if (!EmbedContentInternal(dataUriScheme))
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1236 {
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1237 throw OrthancException(ErrorCode_BadFileFormat);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1238 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1239 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1240
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1241
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1242 void ParsedDicomFile::EmbedImage(MimeType mime,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1243 const std::string& content)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1244 {
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1245 switch (mime)
2905
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2889
diff changeset
1246 {
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1247
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1248 #if ORTHANC_ENABLE_JPEG == 1
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1249 case MimeType_Jpeg:
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1250 {
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1251 JpegReader reader;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1252 reader.ReadFromMemory(content);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1253 EmbedImage(reader);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1254 break;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1255 }
2905
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2889
diff changeset
1256 #endif
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2889
diff changeset
1257
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2889
diff changeset
1258 #if ORTHANC_ENABLE_PNG == 1
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1259 case MimeType_Png:
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1260 {
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1261 PngReader reader;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1262 reader.ReadFromMemory(content);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1263 EmbedImage(reader);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1264 break;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1265 }
2905
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2889
diff changeset
1266 #endif
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2889
diff changeset
1267
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1268 case MimeType_Pam:
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1269 {
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1270 PamReader reader;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1271 reader.ReadFromMemory(content);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1272 EmbedImage(reader);
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1273 break;
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1274 }
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1275
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1276 default:
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1277 throw OrthancException(ErrorCode_NotImplemented);
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1278 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1279 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1280
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1281
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1282 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1283 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1284 if (accessor.GetFormat() != PixelFormat_Grayscale8 &&
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1285 accessor.GetFormat() != PixelFormat_Grayscale16 &&
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1286 accessor.GetFormat() != PixelFormat_SignedGrayscale16 &&
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1287 accessor.GetFormat() != PixelFormat_RGB24 &&
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1288 accessor.GetFormat() != PixelFormat_RGBA32)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1289 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1290 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1291 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1292
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1293 InvalidateCache();
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1294
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1295 if (accessor.GetFormat() == PixelFormat_RGBA32)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1296 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1297 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM";
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1298 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1299
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1300 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1301
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1302 Remove(DICOM_TAG_PIXEL_DATA);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1303 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1304 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1305 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1");
2910
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1306
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1307 // The "Number of frames" must only be present in multi-frame images
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1308 //ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1309
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1310 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16)
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1311 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1312 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1313 }
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1314 else
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1315 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1316 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1317 }
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1318
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1319 unsigned int bytesPerPixel = 0;
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1320
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1321 switch (accessor.GetFormat())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1322 {
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1323 case PixelFormat_Grayscale8:
2910
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1324 // By default, grayscale images are MONOCHROME2
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1325 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2");
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1326
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1327 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1328 ReplacePlainString(DICOM_TAG_BITS_STORED, "8");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1329 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7");
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1330 bytesPerPixel = 1;
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1331 break;
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1332
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1333 case PixelFormat_RGB24:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1334 case PixelFormat_RGBA32:
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1335 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1336 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1337 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1338 ReplacePlainString(DICOM_TAG_BITS_STORED, "8");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1339 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1340 bytesPerPixel = 3;
2910
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1341
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1342 // "Planar configuration" must only present if "Samples per
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1343 // Pixel" is greater than 1
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1344 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1345
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1346 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1347
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1348 case PixelFormat_Grayscale16:
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1349 case PixelFormat_SignedGrayscale16:
2910
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1350 // By default, grayscale images are MONOCHROME2
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1351 SetIfAbsent(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2");
83133583183d minor fixes if embedding images within DICOM
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2908
diff changeset
1352
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1353 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1354 ReplacePlainString(DICOM_TAG_BITS_STORED, "16");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1355 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1356 bytesPerPixel = 2;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1357 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1358
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1359 default:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1360 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1361 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1362
1941
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1363 assert(bytesPerPixel != 0);
d7b176f7dd1b test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
1364
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1365 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(),
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1366 DICOM_TAG_PIXEL_DATA.GetElement());
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1367
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1368 std::unique_ptr<DcmPixelData> pixels(new DcmPixelData(key));
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1369
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1370 unsigned int pitch = accessor.GetWidth() * bytesPerPixel;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1371 Uint8* target = NULL;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1372 pixels->createUint8Array(accessor.GetHeight() * pitch, target);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1373
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1374 for (unsigned int y = 0; y < accessor.GetHeight(); y++)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1375 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1376 switch (accessor.GetFormat())
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1377 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1378 case PixelFormat_RGB24:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1379 case PixelFormat_Grayscale8:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1380 case PixelFormat_Grayscale16:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1381 case PixelFormat_SignedGrayscale16:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1382 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1383 memcpy(target, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1384 target += pitch;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1385 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1386 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1387
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1388 case PixelFormat_RGBA32:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1389 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1390 // The alpha channel is not supported by the DICOM standard
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1391 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1392 for (unsigned int x = 0; x < accessor.GetWidth(); x++, target += 3, source += 4)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1393 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1394 target[0] = source[0];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1395 target[1] = source[1];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1396 target[2] = source[2];
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1397 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1398
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1399 break;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1400 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1401
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1402 default:
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1403 throw OrthancException(ErrorCode_NotImplemented);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1404 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1405 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1406
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1407 if (!GetDcmtkObject().getDataset()->insert(pixels.release(), false, false).good())
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1408 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1409 throw OrthancException(ErrorCode_InternalError);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1410 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 799
diff changeset
1411 }
874
87791ebc1f50 download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
1412
87791ebc1f50 download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
1413
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
1414 Encoding ParsedDicomFile::DetectEncoding(bool& hasCodeExtensions) const
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1415 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
1416 return FromDcmtkBridge::DetectEncoding(hasCodeExtensions,
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1417 *GetDcmtkObject().getDataset(),
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
1418 GetDefaultDicomEncoding());
956
2fd5a163776d primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 874
diff changeset
1419 }
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1420
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1421
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1422 void ParsedDicomFile::SetEncoding(Encoding encoding)
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1423 {
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1424 if (encoding == Encoding_Windows1251)
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1425 {
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1426 // This Cyrillic codepage is not officially supported by the
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1427 // DICOM standard. Do not set the SpecificCharacterSet tag.
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
1428 return;
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1429 }
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1430
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
1431 std::string s = GetDicomSpecificCharacterSet(encoding);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1432 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s);
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1433 }
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1018
diff changeset
1434
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1435 void ParsedDicomFile::DatasetToJson(Json::Value& target,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1436 DicomToJsonFormat format,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1437 DicomToJsonFlags flags,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1438 unsigned int maxStringLength)
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1113
diff changeset
1439 {
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1440 std::set<DicomTag> ignoreTagLength;
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1441 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObject().getDataset(),
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1442 format, flags, maxStringLength,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1443 GetDefaultDicomEncoding(), ignoreTagLength);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1444 }
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1445
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1446
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1447 void ParsedDicomFile::DatasetToJson(Json::Value& target,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1448 DicomToJsonFormat format,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1449 DicomToJsonFlags flags,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1450 unsigned int maxStringLength,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1451 const std::set<DicomTag>& ignoreTagLength)
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1452 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1453 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObject().getDataset(),
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1454 format, flags, maxStringLength,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1455 GetDefaultDicomEncoding(), ignoreTagLength);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1456 }
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1457
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1458
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1459 void ParsedDicomFile::DatasetToJson(Json::Value& target,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1460 const std::set<DicomTag>& ignoreTagLength)
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1461 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1462 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObject().getDataset(), ignoreTagLength);
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1113
diff changeset
1463 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1464
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1465
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1466 void ParsedDicomFile::DatasetToJson(Json::Value& target)
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1467 {
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
1468 const std::set<DicomTag> ignoreTagLength;
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1469 FromDcmtkBridge::ExtractDicomAsJson(target, *GetDcmtkObject().getDataset(), ignoreTagLength);
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1470 }
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1471
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2126
diff changeset
1472
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1473 void ParsedDicomFile::HeaderToJson(Json::Value& target,
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1474 DicomToJsonFormat format)
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1475 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1476 FromDcmtkBridge::ExtractHeaderAsJson(target, *GetDcmtkObject().getMetaInfo(), format, DicomToJsonFlags_None, 0);
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1477 }
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1478
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1827
diff changeset
1479
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1480 bool ParsedDicomFile::HasTag(const DicomTag& tag) const
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1481 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1482 DcmTag key(tag.GetGroup(), tag.GetElement());
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1483 return GetDcmtkObject().getDataset()->tagExists(key);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1484 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1485
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1486
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1487 void ParsedDicomFile::EmbedPdf(const std::string& pdf)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1488 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1489 if (pdf.size() < 5 || // (*)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1490 strncmp("%PDF-", pdf.c_str(), 5) != 0)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1491 {
2954
d924f9bb61cc taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2924
diff changeset
1492 throw OrthancException(ErrorCode_BadFileFormat, "Not a PDF file");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1493 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1494
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1495 InvalidateCache();
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1496
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1497 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1498 ReplacePlainString(FromDcmtkBridge::Convert(DCM_Modality), "OT");
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1499 ReplacePlainString(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD");
2905
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2889
diff changeset
1500 ReplacePlainString(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), MIME_PDF);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1981
diff changeset
1501 //ReplacePlainString(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1502
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1503 std::unique_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument));
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1504
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1505 size_t s = pdf.size();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1506 if (s & 1)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1507 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1508 // The size of the buffer must be even
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1509 s += 1;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1510 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1511
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1512 Uint8* bytes = NULL;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1513 OFCondition result = element->createUint8Array(s, bytes);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1514 if (!result.good() || bytes == NULL)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1515 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1516 throw OrthancException(ErrorCode_NotEnoughMemory);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1517 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1518
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1519 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) )
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1520 bytes[s - 1] = 0;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1521
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1522 memcpy(bytes, pdf.c_str(), pdf.size());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1523
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1524 DcmPolymorphOBOW* obj = element.release();
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1525 result = GetDcmtkObject().getDataset()->insert(obj);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1526
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1527 if (!result.good())
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1528 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1529 delete obj;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1530 throw OrthancException(ErrorCode_NotEnoughMemory);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1531 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1532 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1523
diff changeset
1533
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1534
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1535 bool ParsedDicomFile::ExtractPdf(std::string& pdf)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1536 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1537 std::string sop, mime;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1538
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1539 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1540 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) ||
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1541 sop != UID_EncapsulatedPDFStorage ||
2905
ae20fccdd867 refactoring mime types
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2889
diff changeset
1542 mime != MIME_PDF)
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1543 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1544 return false;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1545 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1546
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1547 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT))
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1548 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1549 return false;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1550 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1551
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1552 // Strip the possible pad byte at the end of file, because the
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1553 // encapsulated documents must always have an even length. The PDF
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1554 // format expects files to end with %%EOF followed by CR/LF. If
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1555 // the last character of the file is not a CR or LF, we assume it
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1556 // is a pad byte and remove it.
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1557 if (pdf.size() > 0)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1558 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1559 char last = *pdf.rbegin();
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1560
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1561 if (last != 10 && last != 13)
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1562 {
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1563 pdf.resize(pdf.size() - 1);
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1564 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1565 }
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1566
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1567 return true;
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1568 }
1662
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1569
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1655
diff changeset
1570
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1571 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1572 DicomFromJsonFlags flags,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1573 const std::string& privateCreator)
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1574 {
2445
6e5bc5c6d1a4 Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2409
diff changeset
1575 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false;
6e5bc5c6d1a4 Fix to allow creating DICOM instances with empty Specific Character Set (0008,0005)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2409
diff changeset
1576 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false;
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1577
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
1578 std::unique_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers));
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2380
diff changeset
1579 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, GetDefaultDicomEncoding()));
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1580
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1581 const Json::Value::Members tags = json.getMemberNames();
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1929
diff changeset
1582
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1583 for (size_t i = 0; i < tags.size(); i++)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1584 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1585 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1586 const Json::Value& value = json[tags[i]];
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1587
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1588 if (tag == DICOM_TAG_PIXEL_DATA ||
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1589 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1590 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1591 if (value.type() != Json::stringValue)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1592 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1593 throw OrthancException(ErrorCode_BadRequest);
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1594 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1595 else
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1596 {
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1597 result->EmbedContent(value.asString());
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1598 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1599 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1600 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1601 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3651
diff changeset
1602 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent, privateCreator);
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1603 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1604 }
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1605
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1606 return result.release();
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
1607 }
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1608
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1609
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1610 void ParsedDicomFile::GetRawFrame(std::string& target,
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1611 MimeType& mime,
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1612 unsigned int frameId)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1613 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1614 if (pimpl_->frameIndex_.get() == NULL)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1615 {
3745
113a7b994a12 extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
1616 assert(pimpl_->file_ != NULL &&
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1617 GetDcmtkObject().getDataset() != NULL);
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1618 pimpl_->frameIndex_.reset(new DicomFrameIndex(*GetDcmtkObject().getDataset()));
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1619 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1620
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1621 pimpl_->frameIndex_->GetRawFrame(target, frameId);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1622
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1623 E_TransferSyntax transferSyntax = GetDcmtkObject().getDataset()->getCurrentXfer();
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1624 switch (transferSyntax)
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1625 {
1946
40b7a0176305 fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1945
diff changeset
1626 case EXS_JPEGProcess1:
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1627 mime = MimeType_Jpeg;
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1628 break;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1629
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1630 case EXS_JPEG2000LosslessOnly:
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1631 case EXS_JPEG2000:
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1632 mime = MimeType_Jpeg2000;
2016
0ae26237569a cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
1633 break;
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1634
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1635 default:
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
1636 mime = MimeType_Binary;
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1637 break;
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1638 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1639 }
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1640
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1641
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1642 void ParsedDicomFile::InvalidateCache()
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1643 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1644 pimpl_->frameIndex_.reset(NULL);
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1913
diff changeset
1645 }
1950
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1646
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1647
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1648 unsigned int ParsedDicomFile::GetFramesCount() const
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1649 {
3745
113a7b994a12 extracting the raw frame in the transcoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3712
diff changeset
1650 assert(pimpl_->file_ != NULL &&
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1651 GetDcmtkObject().getDataset() != NULL);
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1652 return DicomFrameIndex::GetFramesCount(*GetDcmtkObject().getDataset());
1950
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1946
diff changeset
1653 }
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1654
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1655
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1656 void ParsedDicomFile::ChangeEncoding(Encoding target)
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1657 {
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
1658 bool hasCodeExtensions;
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
1659 Encoding source = DetectEncoding(hasCodeExtensions);
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1660
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1661 if (source != target) // Avoid unnecessary conversion
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1662 {
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1663 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(target));
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1664 FromDcmtkBridge::ChangeStringEncoding(*GetDcmtkObject().getDataset(), source, hasCodeExtensions, target);
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1665 }
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
1666 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1667
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1668
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1669 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target) const
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1670 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1671 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObject().getDataset());
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1672 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1673
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1674
3577
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3446
diff changeset
1675 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target,
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3446
diff changeset
1676 const std::set<DicomTag>& ignoreTagLength) const
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3446
diff changeset
1677 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1678 FromDcmtkBridge::ExtractDicomSummary(target, *GetDcmtkObject().getDataset(), ignoreTagLength);
3577
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3446
diff changeset
1679 }
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3446
diff changeset
1680
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3446
diff changeset
1681
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1682 bool ParsedDicomFile::LookupTransferSyntax(std::string& result)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1683 {
3948
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1684 #if 0
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1685 // This was the implementation in Orthanc <= 1.6.1
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1686
3883
795c9ca5eb91 DANGEROUS changeset: replaced "getOriginalXfer()" by "getCurrentXfer()" throughout Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3881
diff changeset
1687 // TODO - Shouldn't "dataset.getCurrentXfer()" be used instead of
3881
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1688 // using the meta header?
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1689 const char* value = NULL;
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1690
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1691 if (GetDcmtkObject().getMetaInfo() != NULL &&
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1692 GetDcmtkObject().getMetaInfo()->findAndGetString(DCM_TransferSyntaxUID, value).good() &&
3881
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1693 value != NULL)
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1694 {
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1695 result.assign(value);
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1696 return true;
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1697 }
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1698 else
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1699 {
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1700 return false;
f23ab7829a8d reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3853
diff changeset
1701 }
3948
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1702 #else
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1703 DicomTransferSyntax s;
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1704 if (FromDcmtkBridge::LookupOrthancTransferSyntax(s, GetDcmtkObject()))
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1705 {
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1706 result.assign(GetTransferSyntaxUid(s));
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1707 return true;
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1708 }
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1709 else
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1710 {
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1711 return false;
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1712 }
3d2fc1b5cc8c ResourceModificationJob: Fix the SOP instance UID to preserve references
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
1713 #endif
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
1714 }
2281
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1715
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1716
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1717 bool ParsedDicomFile::LookupPhotometricInterpretation(PhotometricInterpretation& result) const
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1718 {
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1719 DcmTagKey k(DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetGroup(),
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1720 DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetElement());
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1721
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1722 DcmDataset& dataset = *GetDcmtkObject().getDataset();
2281
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1723
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1724 const char *c = NULL;
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1725 if (dataset.findAndGetString(k, c).good() &&
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1726 c != NULL)
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1727 {
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1728 result = StringToPhotometricInterpretation(c);
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1729 return true;
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1730 }
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1731 else
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1732 {
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1733 return false;
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1734 }
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1735 }
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1736
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1737
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1738 void ParsedDicomFile::Apply(ITagVisitor& visitor)
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1739 {
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3912
diff changeset
1740 FromDcmtkBridge::Apply(*GetDcmtkObject().getDataset(), visitor, GetDefaultDicomEncoding());
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1741 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1742 }