Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.cpp @ 5159:f5907aecbaed
conditional usage of malloc_trim
author | Alain Mazy <am@osimis.io> |
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date | Thu, 02 Feb 2023 11:28:35 +0100 |
parents | c81f363d3aa3 |
children | 9f16979b6124 |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
224 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
9 * modify it under the terms of the GNU General Public License as | |
10 * published by the Free Software Foundation, either version 3 of the | |
11 * License, or (at your option) any later version. | |
12 * | |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
16 * General Public License for more details. | |
17 * | |
18 * You should have received a copy of the GNU General Public License | |
19 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
20 **/ | |
21 | |
22 | |
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23 #include "PrecompiledHeadersServer.h" |
224 | 24 #include "ServerContext.h" |
25 | |
4045 | 26 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h" |
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27 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h" |
4499 | 28 #include "../../OrthancFramework/Sources/DicomFormat/DicomStreamReader.h" |
4045 | 29 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h" |
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30 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h" |
4045 | 31 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" |
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32 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" |
4045 | 33 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h" |
34 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h" | |
35 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h" | |
36 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h" | |
37 #include "../../OrthancFramework/Sources/Logging.h" | |
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38 #include "../../OrthancFramework/Sources/MallocMemoryBuffer.h" |
4045 | 39 #include "../../OrthancFramework/Sources/MetricsRegistry.h" |
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40 #include "../Plugins/Engine/OrthancPlugins.h" |
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41 |
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42 #include "OrthancConfiguration.h" |
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43 #include "OrthancRestApi/OrthancRestApi.h" |
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44 #include "Search/DatabaseLookup.h" |
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45 #include "ServerJobs/OrthancJobUnserializer.h" |
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46 #include "ServerToolbox.h" |
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47 #include "StorageCommitmentReports.h" |
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48 |
794 | 49 #include <dcmtk/dcmdata/dcfilefo.h> |
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50 #include <dcmtk/dcmnet/dimse.h> |
5149 | 51 #include <malloc.h> |
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52 |
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53 static size_t DICOM_CACHE_SIZE = 128 * 1024 * 1024; // 128 MB |
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54 |
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55 |
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56 /** |
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57 * IMPORTANT: We make the assumption that the same instance of |
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58 * FileStorage can be accessed from multiple threads. This seems OK |
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59 * since the filesystem implements the required locking mechanisms, |
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60 * but maybe a read-writer lock on the "FileStorage" could be |
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61 * useful. Conversely, "ServerIndex" already implements mutex-based |
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62 * locking. |
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63 **/ |
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64 |
224 | 65 namespace Orthanc |
66 { | |
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67 static void ComputeStudyTags(ExpandedResource& resource, |
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68 ServerContext& context, |
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69 const std::string& studyPublicId, |
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70 const std::set<DicomTag>& requestedTags); |
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71 |
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72 |
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73 static bool IsUncompressedTransferSyntax(DicomTransferSyntax transferSyntax) |
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74 { |
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75 return (transferSyntax == DicomTransferSyntax_LittleEndianImplicit || |
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76 transferSyntax == DicomTransferSyntax_LittleEndianExplicit || |
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77 transferSyntax == DicomTransferSyntax_BigEndianExplicit); |
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78 } |
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79 |
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80 |
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81 static bool IsTranscodableTransferSyntax(DicomTransferSyntax transferSyntax) |
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82 { |
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83 return ( |
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84 // Do not try to transcode DICOM videos (new in Orthanc 1.8.2) |
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85 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtMainLevel && |
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86 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtHighLevel && |
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87 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_1 && |
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88 transferSyntax != DicomTransferSyntax_MPEG4BDcompatibleHighProfileLevel4_1 && |
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89 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For2DVideo && |
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90 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For3DVideo && |
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91 transferSyntax != DicomTransferSyntax_MPEG4StereoHighProfileLevel4_2 && |
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92 transferSyntax != DicomTransferSyntax_HEVCMainProfileLevel5_1 && |
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93 transferSyntax != DicomTransferSyntax_HEVCMain10ProfileLevel5_1 && |
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94 |
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95 // Do not try to transcode special transfer syntaxes |
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96 transferSyntax != DicomTransferSyntax_RFC2557MimeEncapsulation && |
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97 transferSyntax != DicomTransferSyntax_XML); |
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98 } |
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99 |
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100 |
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101 ServerContext::StoreResult::StoreResult() : |
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102 status_(StoreStatus_Failure), |
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103 cstoreStatusCode_(0) |
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104 { |
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105 } |
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106 |
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107 void ServerContext::HousekeeperThread(ServerContext* that, |
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108 unsigned int sleepDelay) |
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109 { |
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110 // note, right now, this thread is started only if malloc_trim is defined |
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111 while (!that->done_) |
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112 { |
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113 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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114 |
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115 // If possible, gives memory back to the system |
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116 // (see OrthancServer/Resources/ImplementationNotes/memory_consumption.txt) |
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117 #if HAVE_MALLOC_TRIM == 1 |
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118 malloc_trim(128*1024); |
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119 #endif |
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120 } |
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121 } |
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122 |
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123 void ServerContext::ChangeThread(ServerContext* that, |
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124 unsigned int sleepDelay) |
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125 { |
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126 while (!that->done_) |
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127 { |
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128 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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129 |
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130 if (obj.get() != NULL) |
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131 { |
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132 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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133 |
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134 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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135 for (ServerListeners::iterator it = that->listeners_.begin(); |
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136 it != that->listeners_.end(); ++it) |
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137 { |
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138 try |
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139 { |
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140 try |
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141 { |
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142 it->GetListener().SignalChange(change); |
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143 } |
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144 catch (std::bad_alloc&) |
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145 { |
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146 LOG(ERROR) << "Not enough memory while signaling a change"; |
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147 } |
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148 catch (...) |
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149 { |
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150 throw OrthancException(ErrorCode_InternalError); |
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151 } |
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152 } |
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153 catch (OrthancException& e) |
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154 { |
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155 LOG(ERROR) << "Error in the " << it->GetDescription() |
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156 << " callback while signaling a change: " << e.What() |
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157 << " (code " << e.GetErrorCode() << ")"; |
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158 } |
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159 } |
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160 } |
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161 } |
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162 } |
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163 |
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164 |
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165 void ServerContext::SaveJobsThread(ServerContext* that, |
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166 unsigned int sleepDelay) |
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167 { |
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168 static const boost::posix_time::time_duration PERIODICITY = |
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169 boost::posix_time::seconds(10); |
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170 |
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171 boost::posix_time::ptime next = |
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172 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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173 |
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174 while (!that->done_) |
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175 { |
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176 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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177 |
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178 if (that->haveJobsChanged_ || |
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179 boost::posix_time::microsec_clock::universal_time() >= next) |
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180 { |
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181 that->haveJobsChanged_ = false; |
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182 that->SaveJobsEngine(); |
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183 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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184 } |
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185 } |
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186 } |
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187 |
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188 |
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189 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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190 { |
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191 haveJobsChanged_ = true; |
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192 mainLua_.SignalJobSubmitted(jobId); |
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194 #if ORTHANC_ENABLE_PLUGINS == 1 | |
195 if (HasPlugins()) | |
196 { | |
197 GetPlugins().SignalJobSubmitted(jobId); | |
198 } | |
199 #endif | |
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200 } |
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201 |
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202 |
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203 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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204 { |
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205 haveJobsChanged_ = true; |
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206 mainLua_.SignalJobSuccess(jobId); |
4129 | 207 |
208 #if ORTHANC_ENABLE_PLUGINS == 1 | |
209 if (HasPlugins()) | |
210 { | |
211 GetPlugins().SignalJobSuccess(jobId); | |
212 } | |
213 #endif | |
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214 } |
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215 |
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216 |
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217 void ServerContext::SignalJobFailure(const std::string& jobId) |
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218 { |
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219 haveJobsChanged_ = true; |
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220 mainLua_.SignalJobFailure(jobId); |
4129 | 221 |
222 #if ORTHANC_ENABLE_PLUGINS == 1 | |
223 if (HasPlugins()) | |
224 { | |
225 GetPlugins().SignalJobFailure(jobId); | |
226 } | |
227 #endif | |
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228 } |
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229 |
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230 |
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231 void ServerContext::SetupJobsEngine(bool unitTesting, |
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232 bool loadJobsFromDatabase) |
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233 { |
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234 if (loadJobsFromDatabase) |
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235 { |
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236 std::string serialized; |
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237 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry, false /* not shared */)) |
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238 { |
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239 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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240 |
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241 try |
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242 { |
4205 | 243 OrthancJobUnserializer unserializer(*this); |
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244 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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245 } |
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246 catch (OrthancException& e) |
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247 { |
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248 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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249 } |
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250 } |
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251 else |
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252 { |
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253 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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254 } |
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255 } |
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256 else |
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257 { |
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258 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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259 } |
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260 |
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261 jobsEngine_.GetRegistry().SetObserver(*this); |
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262 jobsEngine_.Start(); |
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263 isJobsEngineUnserialized_ = true; |
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264 |
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265 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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266 } |
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267 |
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268 |
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269 void ServerContext::SaveJobsEngine() |
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270 { |
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271 if (saveJobs_) |
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272 { |
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273 LOG(TRACE) << "Serializing the content of the jobs engine"; |
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274 |
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275 try |
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276 { |
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277 Json::Value value; |
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278 jobsEngine_.GetRegistry().Serialize(value); |
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279 |
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280 std::string serialized; |
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281 Toolbox::WriteFastJson(serialized, value); |
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282 |
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283 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, false /* not shared */, serialized); |
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284 } |
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285 catch (OrthancException& e) |
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286 { |
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287 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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288 } |
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289 } |
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290 } |
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291 |
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292 |
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293 void ServerContext::PublishDicomCacheMetrics() |
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294 { |
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295 metricsRegistry_->SetValue("orthanc_dicom_cache_size", |
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296 static_cast<float>(dicomCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024)); |
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297 metricsRegistry_->SetValue("orthanc_dicom_cache_count", |
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298 static_cast<float>(dicomCache_.GetNumberOfItems())); |
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299 } |
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300 |
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301 |
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302 ServerContext::ServerContext(IDatabaseWrapper& database, |
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303 IStorageArea& area, |
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304 bool unitTesting, |
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305 size_t maxCompletedJobs) : |
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306 index_(*this, database, (unitTesting ? 20 : 500)), |
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307 area_(area), |
656 | 308 compressionEnabled_(false), |
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309 storeMD5_(true), |
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310 largeDicomThrottler_(1), |
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311 dicomCache_(DICOM_CACHE_SIZE), |
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312 mainLua_(*this), |
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313 filterLua_(*this), |
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314 luaListener_(*this), |
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315 jobsEngine_(maxCompletedJobs), |
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316 #if ORTHANC_ENABLE_PLUGINS == 1 |
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317 plugins_(NULL), |
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318 #endif |
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319 done_(false), |
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320 haveJobsChanged_(false), |
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321 isJobsEngineUnserialized_(false), |
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322 metricsRegistry_(new MetricsRegistry), |
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323 isHttpServerSecure_(true), |
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324 isExecuteLuaEnabled_(false), |
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325 overwriteInstances_(false), |
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326 dcmtkTranscoder_(new DcmtkTranscoder), |
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327 isIngestTranscoding_(false), |
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328 ingestTranscodingOfUncompressed_(true), |
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329 ingestTranscodingOfCompressed_(true), |
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330 preferredTransferSyntax_(DicomTransferSyntax_LittleEndianExplicit), |
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331 deidentifyLogs_(false), |
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332 serverStartTimeUtc_(boost::posix_time::second_clock::universal_time()) |
224 | 333 { |
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334 try |
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335 { |
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336 unsigned int lossyQuality; |
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337 |
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338 { |
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339 OrthancConfiguration::ReaderLock lock; |
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340 |
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341 queryRetrieveArchive_.reset( |
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342 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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343 mediaArchive_.reset( |
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344 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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345 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET(); |
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346 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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347 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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348 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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349 |
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350 // New configuration options in Orthanc 1.5.1 |
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351 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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352 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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353 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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354 |
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355 // New configuration option in Orthanc 1.6.0 |
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356 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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357 |
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358 // New options in Orthanc 1.7.0 |
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359 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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360 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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361 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
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362 |
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363 std::string s; |
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364 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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365 { |
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366 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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367 { |
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368 isIngestTranscoding_ = true; |
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369 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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370 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
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371 |
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372 // New options in Orthanc 1.8.2 |
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373 ingestTranscodingOfUncompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfUncompressed", true); |
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374 ingestTranscodingOfCompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfCompressed", true); |
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375 |
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376 LOG(WARNING) << " Ingest transcoding will " |
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377 << (ingestTranscodingOfUncompressed_ ? "be applied" : "*not* be applied") |
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378 << " to uncompressed transfer syntaxes (Little Endian Implicit/Explicit, Big Endian Explicit)"; |
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379 |
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380 LOG(WARNING) << " Ingest transcoding will " |
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381 << (ingestTranscodingOfCompressed_ ? "be applied" : "*not* be applied") |
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382 << " to compressed transfer syntaxes"; |
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383 } |
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384 else |
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385 { |
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386 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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387 "Unknown transfer syntax for ingest transcoding: " + s); |
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388 } |
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389 } |
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390 else |
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|
391 { |
3941
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class CleaningInstancesJob to share cleaning code by merge/split jobs
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392 isIngestTranscoding_ = false; |
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393 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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|
394 } |
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395 |
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396 // New options in Orthanc 1.8.2 |
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397 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true)) |
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398 { |
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399 deidentifyLogs_ = true; |
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400 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled"; |
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401 |
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|
402 DicomVersion version = StringToDicomVersion( |
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diff
changeset
|
403 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2021b")); |
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|
404 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is " |
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405 << EnumerationToString(version); |
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406 |
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|
407 logsDeidentifierRules_.SetupAnonymization(version); |
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408 } |
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|
409 else |
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|
410 { |
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411 deidentifyLogs_ = false; |
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changeset
|
412 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled"; |
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|
413 } |
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diff
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|
414 |
4473
68f52897c119
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|
415 // New options in Orthanc 1.9.0 |
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416 if (lock.GetConfiguration().LookupStringParameter(s, "DicomScuPreferredTransferSyntax") && |
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|
417 !LookupTransferSyntax(preferredTransferSyntax_, s)) |
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418 { |
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|
419 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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|
420 "Unknown preferred transfer syntax: " + s); |
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421 } |
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422 |
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diff
changeset
|
423 CLOG(INFO, DICOM) << "Preferred transfer syntax for Orthanc C-STORE SCU: " |
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diff
changeset
|
424 << GetTransferSyntaxUid(preferredTransferSyntax_); |
4473
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diff
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|
425 |
68f52897c119
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diff
changeset
|
426 lock.GetConfiguration().GetAcceptedTransferSyntaxes(acceptedTransferSyntaxes_); |
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|
427 |
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|
428 isUnknownSopClassAccepted_ = lock.GetConfiguration().GetBooleanParameter("UnknownSopClassAccepted", false); |
3939
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|
429 } |
3894
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430 |
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431 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
2940
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432 |
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433 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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434 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
5159
f5907aecbaed
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|
435 #if HAVE_MALLOC_TRIM == 1 |
5152
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|
436 housekeeperThread_ = boost::thread(HousekeeperThread, this, 100); |
5159
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437 #else |
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|
438 LOG(INFO) << "Your platform does not support malloc_trim(), not starting the housekeeper thread"; |
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439 #endif |
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440 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
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441 } |
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|
442 catch (OrthancException&) |
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443 { |
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444 Stop(); |
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445 throw; |
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|
446 } |
224 | 447 } |
448 | |
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449 |
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|
450 |
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|
451 ServerContext::~ServerContext() |
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|
452 { |
1453
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453 if (!done_) |
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|
454 { |
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|
455 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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456 Stop(); |
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|
457 } |
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458 } |
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|
459 |
1436
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460 |
1447
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|
461 void ServerContext::Stop() |
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462 { |
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463 if (!done_) |
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464 { |
1459 | 465 { |
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466 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 467 listeners_.clear(); |
468 } | |
469 | |
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470 done_ = true; |
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471 |
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472 if (changeThread_.joinable()) |
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473 { |
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474 changeThread_.join(); |
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475 } |
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diff
changeset
|
476 |
2672
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
477 if (saveJobsThread_.joinable()) |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
478 { |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
479 saveJobsThread_.join(); |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
480 } |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
481 |
4024
1d2b31fc782f
new 'changes': JobSubmitted, JobSuccess, JobFailure
Alain Mazy <alain@mazy.be>
parents:
4022
diff
changeset
|
482 jobsEngine_.GetRegistry().ResetObserver(); |
2815
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
483 |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
484 if (isJobsEngineUnserialized_) |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
485 { |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
486 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
487 SaveJobsEngine(); |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
488 } |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
489 |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
490 // Do not change the order below! |
2570
2e879c796ec7
JobsRegistry::SubmitAndWait(), StoreScuJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2507
diff
changeset
|
491 jobsEngine_.Stop(); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
492 index_.Stop(); |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
493 } |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
494 } |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
495 |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
496 |
236 | 497 void ServerContext::SetCompressionEnabled(bool enabled) |
498 { | |
499 if (enabled) | |
500 LOG(WARNING) << "Disk compression is enabled"; | |
501 else | |
502 LOG(WARNING) << "Disk compression is disabled"; | |
503 | |
504 compressionEnabled_ = enabled; | |
505 } | |
506 | |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
507 |
1126
bf67431a7383
handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1124
diff
changeset
|
508 void ServerContext::RemoveFile(const std::string& fileUuid, |
bf67431a7383
handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1124
diff
changeset
|
509 FileContentType type) |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
510 { |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
511 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
512 accessor.Remove(fileUuid, type); |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
513 } |
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
514 |
996
cf52f3bcb2b3
clarification of Lua classes wrt multithreading
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
995
diff
changeset
|
515 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
516 ServerContext::StoreResult ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
517 DicomInstanceToStore& dicom, |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
518 StoreInstanceMode mode, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
519 bool isReconstruct) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
520 { |
3814
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
521 bool overwrite; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
522 switch (mode) |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
523 { |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
524 case StoreInstanceMode_Default: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
525 overwrite = overwriteInstances_; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
526 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
527 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
528 case StoreInstanceMode_OverwriteDuplicate: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
529 overwrite = true; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
530 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
531 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
532 case StoreInstanceMode_IgnoreDuplicate: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
533 overwrite = false; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
534 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
535 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
536 default: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
537 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4499 | 538 } |
539 | |
540 bool hasPixelDataOffset; | |
541 uint64_t pixelDataOffset; | |
542 hasPixelDataOffset = DicomStreamReader::LookupPixelDataOffset( | |
543 pixelDataOffset, dicom.GetBufferData(), dicom.GetBufferSize()); | |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
544 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
545 DicomTransferSyntax transferSyntax; |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
546 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
547 |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
548 DicomMap summary; |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
549 dicom.GetSummary(summary); // -> from Orthanc 1.11.1, this includes the leaf nodes and sequences |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
550 |
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
551 std::set<DicomTag> allMainDicomTags = DicomMap::GetAllMainDicomTags(); |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
552 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
553 try |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
554 { |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
555 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
556 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
557 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
558 DicomInstanceHasher hasher(summary); |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
559 resultPublicId = hasher.HashInstance(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
560 |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
561 Json::Value dicomAsJson; |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
562 dicom.GetDicomAsJson(dicomAsJson, allMainDicomTags); // don't crop any main dicom tags |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
563 |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
564 Json::Value simplifiedTags; |
4504
7d1eabfac6e0
removed cached dicom-as-json from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4500
diff
changeset
|
565 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicomAsJson, DicomToJsonFormat_Human); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
566 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
567 // Test if the instance must be filtered out |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
568 StoreResult result; |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
569 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
570 if (!isReconstruct) // skip all filters if this is a reconstruction |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
571 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
572 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
573 |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
574 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
575 { |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
576 try |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
577 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
578 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
579 { |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
580 result.SetStatus(StoreStatus_FilteredOut); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
581 result.SetCStoreStatusCode(STATUS_Success); // to keep backward compatibility, we still return 'success' |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
582 break; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
583 } |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
584 |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
585 if (dicom.GetOrigin().GetRequestOrigin() == Orthanc::RequestOrigin_DicomProtocol) |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
586 { |
4921
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
587 uint16_t filterResult = STATUS_Success; |
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
588 if (!it->GetListener().FilterIncomingCStoreInstance(filterResult, dicom, simplifiedTags)) |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
589 { |
4921
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
590 // The instance is to be discarded |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
591 result.SetStatus(StoreStatus_FilteredOut); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
592 result.SetCStoreStatusCode(filterResult); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
593 break; |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
594 } |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
595 } |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
596 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
597 } |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
598 catch (OrthancException& e) |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
599 { |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
600 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
601 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
602 << " (code " << e.GetErrorCode() << ")"; |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
603 throw; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
604 } |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
605 } |
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
606 } |
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
607 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
608 if (result.GetStatus() == StoreStatus_FilteredOut) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
609 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
610 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
611 return result; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
612 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
613 |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
614 // Remove the file from the DicomCache (useful if |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
615 // "OverwriteInstances" is set to "true") |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
616 dicomCache_.Invalidate(resultPublicId); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
617 PublishDicomCacheMetrics(); |
2825
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2815
diff
changeset
|
618 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
619 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
620 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
621 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
622 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
623 FileContentType_Dicom, compression, storeMD5_); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
624 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
625 ServerIndex::Attachments attachments; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
626 attachments.push_back(dicomInfo); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
627 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
628 FileInfo dicomUntilPixelData; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
629 if (hasPixelDataOffset && |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
630 (!area_.HasReadRange() || |
4519 | 631 compressionEnabled_)) |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
632 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
633 dicomUntilPixelData = accessor.Write(dicom.GetBufferData(), pixelDataOffset, |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
634 FileContentType_DicomUntilPixelData, compression, storeMD5_); |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
635 attachments.push_back(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
636 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
637 |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
638 typedef std::map<MetadataType, std::string> InstanceMetadata; |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
639 InstanceMetadata instanceMetadata; |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
640 result.SetStatus(index_.Store( |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
641 instanceMetadata, summary, attachments, dicom.GetMetadata(), dicom.GetOrigin(), overwrite, |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
642 hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset, isReconstruct)); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
643 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
644 // Only keep the metadata for the "instance" level |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
645 dicom.ClearMetadata(); |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
646 |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
647 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 648 it != instanceMetadata.end(); ++it) |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
649 { |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
650 dicom.AddMetadata(ResourceType_Instance, it->first, it->second); |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
651 } |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
652 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
653 if (result.GetStatus() != StoreStatus_Success) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
654 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
655 accessor.Remove(dicomInfo); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
656 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
657 if (dicomUntilPixelData.IsValid()) |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
658 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
659 accessor.Remove(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
660 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
661 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
662 |
4994 | 663 if (!isReconstruct) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
664 { |
4994 | 665 // skip logs in case of reconstruction |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
666 switch (result.GetStatus()) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
667 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
668 case StoreStatus_Success: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
669 LOG(INFO) << "New instance stored"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
670 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
671 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
672 case StoreStatus_AlreadyStored: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
673 LOG(INFO) << "Already stored"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
674 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
675 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
676 case StoreStatus_Failure: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
677 LOG(ERROR) << "Store failure"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
678 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
679 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
680 default: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
681 // This should never happen |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
682 break; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
683 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
684 |
4994 | 685 // skip all signals if this is a reconstruction |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
686 if (result.GetStatus() == StoreStatus_Success || |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
687 result.GetStatus() == StoreStatus_AlreadyStored) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
688 { |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
689 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
690 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
691 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
692 { |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
693 try |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
694 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
695 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
696 } |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
697 catch (OrthancException& e) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
698 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
699 LOG(ERROR) << "Error in the " << it->GetDescription() |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
700 << " callback while receiving an instance: " << e.What() |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
701 << " (code " << e.GetErrorCode() << ")"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
702 } |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
703 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
704 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
705 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
706 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
707 return result; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
708 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
709 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
710 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
711 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
712 { |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
713 summary.LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
714 } |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
715 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
716 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
717 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
718 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
719 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
720 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
721 ServerContext::StoreResult ServerContext::Store(std::string& resultPublicId, |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
722 DicomInstanceToStore& receivedDicom, |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
723 StoreInstanceMode mode) |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
724 { |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
725 DicomInstanceToStore* dicom = &receivedDicom; |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
726 |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
727 // WARNING: The scope of "modifiedBuffer" and "modifiedDicom" must |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
728 // be the same as that of "dicom" |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
729 MallocMemoryBuffer modifiedBuffer; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
730 std::unique_ptr<DicomInstanceToStore> modifiedDicom; |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
731 |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
732 #if ORTHANC_ENABLE_PLUGINS == 1 |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
733 if (HasPlugins()) |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
734 { |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
735 // New in Orthanc 1.10.0 |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
736 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
737 OrthancPluginReceivedInstanceAction action = GetPlugins().ApplyReceivedInstanceCallbacks( |
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
738 modifiedBuffer, receivedDicom.GetBufferData(), receivedDicom.GetBufferSize(), receivedDicom.GetOrigin().GetRequestOrigin()); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
739 |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
740 switch (action) |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
741 { |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
742 case OrthancPluginReceivedInstanceAction_Discard: |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
743 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
744 CLOG(INFO, PLUGINS) << "A plugin has discarded the instance in its ReceivedInstanceCallback"; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
745 StoreResult result; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
746 result.SetStatus(StoreStatus_FilteredOut); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
747 return result; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
748 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
749 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
750 case OrthancPluginReceivedInstanceAction_KeepAsIs: |
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
751 // This path is also used when no ReceivedInstanceCallback is installed by the plugins |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
752 break; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
753 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
754 case OrthancPluginReceivedInstanceAction_Modify: |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
755 if (modifiedBuffer.GetSize() > 0 && |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
756 modifiedBuffer.GetData() != NULL) |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
757 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
758 CLOG(INFO, PLUGINS) << "A plugin has modified the instance in its ReceivedInstanceCallback"; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
759 modifiedDicom.reset(DicomInstanceToStore::CreateFromBuffer(modifiedBuffer.GetData(), modifiedBuffer.GetSize())); |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
760 modifiedDicom->SetOrigin(receivedDicom.GetOrigin()); |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
761 dicom = modifiedDicom.get(); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
762 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
763 else |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
764 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
765 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback plugin is not returning a modified buffer while it has modified the instance"); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
766 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
767 break; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
768 |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
769 default: |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
770 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback has returned an invalid value"); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
771 } |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
772 } |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
773 #endif |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
774 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
775 return TranscodeAndStore(resultPublicId, dicom, mode); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
776 } |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
777 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
778 ServerContext::StoreResult ServerContext::TranscodeAndStore(std::string& resultPublicId, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
779 DicomInstanceToStore* dicom, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
780 StoreInstanceMode mode, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
781 bool isReconstruct) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
782 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
783 |
5148
2df546a76e17
If specifying 'Transcode' option to /modify or /anonymize, this value will take over the 'IngestTranscoding' global configuration
Alain Mazy <am@osimis.io>
parents:
5147
diff
changeset
|
784 if (!isIngestTranscoding_ || dicom->SkipIngestTranscoding()) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
785 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
786 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
787 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
788 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
789 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
790 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
791 // Automated transcoding of incoming DICOM instance |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
792 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
793 bool transcode = false; |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
794 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
795 DicomTransferSyntax sourceSyntax; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
796 if (!dicom->LookupTransferSyntax(sourceSyntax) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
797 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
798 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
799 // Don't transcode if the incoming DICOM is already in the proper transfer syntax |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
800 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
801 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
802 else if (!IsTranscodableTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
803 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
804 // Don't try to transcode video files, this is useless (new in |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
805 // Orthanc 1.8.2). This could be accepted in the future if |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
806 // video transcoding gets implemented. |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
807 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
808 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
809 else if (IsUncompressedTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
810 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
811 // This is an uncompressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
812 transcode = ingestTranscodingOfUncompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
813 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
814 else |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
815 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
816 // This is an compressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
817 transcode = ingestTranscodingOfCompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
818 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
819 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
820 if (!transcode) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
821 { |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
822 // No transcoding |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
823 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
824 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
825 else |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
826 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
827 // Trancoding |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
828 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
829 syntaxes.insert(ingestTransferSyntax_); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
830 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
831 IDicomTranscoder::DicomImage source; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
832 source.SetExternalBuffer(dicom->GetBufferData(), dicom->GetBufferSize()); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
833 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
834 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
835 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
836 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
837 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
838 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
839 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*tmp)); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
840 toStore->SetOrigin(dicom->GetOrigin()); |
5147
19ccae2e0371
Fix issue #212 (Anonymization process transcodes data and loses resource link)
Alain Mazy <am@osimis.io>
parents:
5111
diff
changeset
|
841 toStore->CopyMetadata(dicom->GetMetadata()); |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
842 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
843 StoreResult result = StoreAfterTranscoding(resultPublicId, *toStore, mode, isReconstruct); |
3938 | 844 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
845 | |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
846 return result; |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
847 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
848 else |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
849 { |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
850 // Cannot transcode => store the original file |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
851 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
852 } |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
853 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
854 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
855 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
856 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
857 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
858 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
859 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
860 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
861 { |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
862 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
863 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
864 if (!index_.LookupAttachment(attachment, revision, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
865 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
866 throw OrthancException(ErrorCode_UnknownResource); |
236 | 867 } |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
868 else |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
869 { |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
870 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
871 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
872 } |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
873 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
874 |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
875 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
876 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
877 FileContentType attachmentType, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
878 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
879 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
880 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
881 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
882 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
883 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
884 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
885 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
886 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
887 if (!index_.LookupAttachment(attachment, revision, resourceId, attachmentType)) |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
888 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
889 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
890 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
891 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
892 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
893 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
894 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
895 return; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
896 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
897 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
898 std::string content; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
899 |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
900 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
901 accessor.Read(content, attachment); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
902 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
903 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
904 content.size(), attachmentType, compression, storeMD5_); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
905 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
906 try |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
907 { |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
908 int64_t newRevision; // ignored |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
909 StoreStatus status = index_.AddAttachment(newRevision, modified, resourceId, |
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
910 true, revision, modified.GetUncompressedMD5()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
911 if (status != StoreStatus_Success) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
912 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
913 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
914 throw OrthancException(ErrorCode_Database); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
915 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
916 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
917 catch (OrthancException&) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
918 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
919 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
920 throw; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
921 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
922 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
923 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
924 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
925 static void InjectEmptyPixelData(Json::Value& dicomAsJson) |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
926 { |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
927 // This is for backward compatibility with Orthanc <= 1.9.0 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
928 Json::Value pixelData = Json::objectValue; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
929 pixelData["Name"] = "PixelData"; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
930 pixelData["Type"] = "Null"; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
931 pixelData["Value"] = Json::nullValue; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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932 |
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933 dicomAsJson["7fe0,0010"] = pixelData; |
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934 } |
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935 |
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diff
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|
936 |
2124 | 937 void ServerContext::ReadDicomAsJson(Json::Value& result, |
2409
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938 const std::string& instancePublicId, |
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939 const std::set<DicomTag>& ignoreTagLength) |
226
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940 { |
4514
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941 /** |
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942 * CASE 1: The DICOM file, truncated at pixel data, is available |
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943 * as an attachment (it was created either because the storage |
4666 | 944 * area does not support range reads, or if "StorageCompression" |
4514
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945 * is enabled). Simply return this attachment. |
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946 **/ |
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947 |
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|
948 FileInfo attachment; |
4629 | 949 int64_t revision; // Ignored |
4514
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950 |
4627
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951 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData)) |
2409
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952 { |
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953 std::string dicom; |
4513
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954 |
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|
955 { |
5048
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956 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
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957 accessor.Read(dicom, attachment); |
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958 } |
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959 |
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960 ParsedDicomFile parsed(dicom); |
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961 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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962 InjectEmptyPixelData(result); |
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963 } |
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964 else |
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965 { |
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966 /** |
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967 * The truncated DICOM file is not stored as a standalone |
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968 * attachment. Lookup whether the pixel data offset has already |
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969 * been computed for this instance. |
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970 **/ |
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971 |
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|
972 bool hasPixelDataOffset; |
4519 | 973 uint64_t pixelDataOffset = 0; // dummy initialization |
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974 |
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975 { |
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976 std::string s; |
4623
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977 if (index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
4514
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|
978 MetadataType_Instance_PixelDataOffset)) |
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979 { |
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980 hasPixelDataOffset = false; |
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981 |
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982 if (!s.empty()) |
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983 { |
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984 try |
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|
985 { |
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|
986 pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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987 hasPixelDataOffset = true; |
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|
988 } |
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989 catch (boost::bad_lexical_cast&) |
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990 { |
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|
991 } |
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|
992 } |
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|
993 |
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994 if (!hasPixelDataOffset) |
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|
995 { |
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|
996 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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997 } |
4513
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998 } |
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|
999 else |
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|
1000 { |
4514
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|
1001 // This instance was created by a version of Orthanc <= 1.9.0 |
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1002 hasPixelDataOffset = false; |
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1003 } |
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1004 } |
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1005 |
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1006 |
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1007 if (hasPixelDataOffset && |
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|
1008 area_.HasReadRange() && |
4627
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1009 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom) && |
4514
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1010 attachment.GetCompressionType() == CompressionType_None) |
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1011 { |
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1012 /** |
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1013 * CASE 2: The pixel data offset is known, AND that a range read |
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1014 * can be used to retrieve the truncated DICOM file. Note that |
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1015 * this case cannot be used if "StorageCompression" option is |
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1016 * "true". |
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1017 **/ |
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1018 |
4900
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1019 std::string dicom; |
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1020 |
4519 | 1021 { |
5048
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|
1022 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
4900
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1023 accessor.ReadStartRange(dicom, attachment.GetUuid(), FileContentType_Dicom, pixelDataOffset); |
4514
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1024 } |
4900
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1025 |
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1026 assert(dicom.size() == pixelDataOffset); |
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1027 ParsedDicomFile parsed(dicom); |
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1028 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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1029 InjectEmptyPixelData(result); |
4514
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1030 } |
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1031 else if (ignoreTagLength.empty() && |
4627
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1032 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomAsJson)) |
4514
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1033 { |
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1034 /** |
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1035 * CASE 3: This instance was created using Orthanc <= |
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1036 * 1.9.0. Reuse the old "DICOM-as-JSON" attachment if available. |
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1037 * This is for backward compatibility: A call to |
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1038 * "/tools/invalidate-tags" or to one flavors of |
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1039 * "/.../.../reconstruct" will disable this case. |
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1040 **/ |
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|
1041 |
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1042 std::string dicomAsJson; |
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1043 |
4514
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|
1044 { |
5048
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|
1045 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
4514
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1046 accessor.Read(dicomAsJson, attachment); |
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1047 } |
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1048 |
4514
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1049 if (!Toolbox::ReadJson(result, dicomAsJson)) |
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1050 { |
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1051 throw OrthancException(ErrorCode_CorruptedFile, |
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1052 "Corrupted DICOM-as-JSON attachment of instance: " + instancePublicId); |
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1053 } |
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1054 } |
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1055 else |
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1056 { |
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1057 /** |
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1058 * CASE 4: Neither the truncated DICOM file is accessible, nor |
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1059 * the DICOM-as-JSON summary. We have to retrieve the full DICOM |
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1060 * file from the storage area. |
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1061 **/ |
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1062 |
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1063 std::string dicom; |
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1064 ReadDicom(dicom, instancePublicId); |
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1065 |
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1066 ParsedDicomFile parsed(dicom); |
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1067 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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1068 |
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1069 if (!hasPixelDataOffset) |
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1070 { |
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1071 /** |
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1072 * The pixel data offset was never computed for this |
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1073 * instance, which indicates that it was created using |
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1074 * Orthanc <= 1.9.0, or that calls to |
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1075 * "LookupPixelDataOffset()" from earlier versions of |
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1076 * Orthanc have failed. Try again this precomputation now |
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1077 * for future calls. |
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1078 **/ |
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1079 if (DicomStreamReader::LookupPixelDataOffset(pixelDataOffset, dicom) && |
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1080 pixelDataOffset < dicom.size()) |
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1081 { |
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1082 index_.OverwriteMetadata(instancePublicId, MetadataType_Instance_PixelDataOffset, |
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1083 boost::lexical_cast<std::string>(pixelDataOffset)); |
4514
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1084 |
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1085 if (!area_.HasReadRange() || |
4519 | 1086 compressionEnabled_) |
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1087 { |
4627
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1088 int64_t newRevision; |
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1089 AddAttachment(newRevision, instancePublicId, FileContentType_DicomUntilPixelData, |
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1090 dicom.empty() ? NULL: dicom.c_str(), pixelDataOffset, |
4640
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|
1091 false /* no old revision */, -1 /* dummy revision */, "" /* dummy MD5 */); |
4514
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1092 } |
4513
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1093 } |
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1094 } |
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1095 } |
226
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1096 } |
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1097 } |
227
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1098 |
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1099 |
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1100 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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1101 const std::string& instancePublicId) |
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1102 { |
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1103 std::set<DicomTag> ignoreTagLength; |
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1104 ReadDicomAsJson(result, instancePublicId, ignoreTagLength); |
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1105 } |
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1106 |
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1107 |
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1108 void ServerContext::ReadDicom(std::string& dicom, |
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1109 const std::string& instancePublicId) |
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1110 { |
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1111 int64_t revision; |
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1112 ReadAttachment(dicom, revision, instancePublicId, FileContentType_Dicom, true /* uncompress */); |
4509
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1113 } |
4792
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1114 |
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1115 void ServerContext::ReadDicomForHeader(std::string& dicom, |
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1116 const std::string& instancePublicId) |
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1117 { |
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1118 if (!ReadDicomUntilPixelData(dicom, instancePublicId)) |
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|
1119 { |
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1120 ReadDicom(dicom, instancePublicId); |
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1121 } |
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1122 } |
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1123 |
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1124 bool ServerContext::ReadDicomUntilPixelData(std::string& dicom, |
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1125 const std::string& instancePublicId) |
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1126 { |
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1127 if (!area_.HasReadRange()) |
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1128 { |
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1129 return false; |
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1130 } |
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1131 |
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1132 FileInfo attachment; |
4627
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1133 int64_t revision; // Ignored |
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1134 if (!index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom)) |
4511
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1135 { |
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1136 throw OrthancException(ErrorCode_InternalError, |
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1137 "Unable to read the DICOM file of instance " + instancePublicId); |
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1138 } |
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1139 |
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1140 std::string s; |
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1141 |
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1142 if (attachment.GetCompressionType() == CompressionType_None && |
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1143 index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
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1144 MetadataType_Instance_PixelDataOffset) && |
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1145 !s.empty()) |
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1146 { |
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1147 try |
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1148 { |
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1149 uint64_t pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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1150 |
5048
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1151 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
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1152 |
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1153 accessor.ReadStartRange(dicom, attachment.GetUuid(), attachment.GetContentType(), pixelDataOffset); |
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1154 assert(dicom.size() == pixelDataOffset); |
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1155 |
4511
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1156 return true; // Success |
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1157 } |
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1158 catch (boost::bad_lexical_cast&) |
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1159 { |
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1160 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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1161 } |
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1162 } |
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1163 |
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1164 return false; |
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1165 } |
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1166 |
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1167 |
2128
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1168 void ServerContext::ReadAttachment(std::string& result, |
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1169 int64_t& revision, |
2128
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1170 const std::string& instancePublicId, |
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1171 FileContentType content, |
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1172 bool uncompressIfNeeded, |
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1173 bool skipCache) |
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1174 { |
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1175 FileInfo attachment; |
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1176 if (!index_.LookupAttachment(attachment, revision, instancePublicId, content)) |
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1177 { |
2956 | 1178 throw OrthancException(ErrorCode_InternalError, |
1179 "Unable to read attachment " + EnumerationToString(content) + | |
1180 " of instance " + instancePublicId); | |
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1181 } |
1550 | 1182 |
3175
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1183 assert(attachment.GetContentType() == content); |
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1184 |
1550 | 1185 { |
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1186 StorageCache* cache = NULL; |
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1187 |
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1188 if (!skipCache) |
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1189 { |
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1190 cache = &storageCache_; |
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1191 } |
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1192 |
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1193 StorageAccessor accessor(area_, cache, GetMetricsRegistry()); |
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1194 |
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1195 if (uncompressIfNeeded) |
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1196 { |
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1197 accessor.Read(result, attachment); |
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1198 } |
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1199 else |
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1200 { |
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1201 // Do not uncompress the content of the storage area, return the |
98b7b9d21d83
removed ServerContext::ReadAttachment()
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1202 // raw data |
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removed ServerContext::ReadAttachment()
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1203 accessor.ReadRaw(result, attachment); |
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1204 } |
1550 | 1205 } |
227
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1206 } |
285
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1207 |
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1208 |
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1209 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& context, |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1210 const std::string& instancePublicId) : |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1211 context_(context), |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1212 instancePublicId_(instancePublicId) |
285
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1213 { |
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|
1214 accessor_.reset(new ParsedDicomCache::Accessor(context_.dicomCache_, instancePublicId)); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1215 |
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1216 if (!accessor_->IsValid()) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1217 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1218 accessor_.reset(NULL); |
285
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1219 |
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changeset
|
1220 // Throttle to avoid loading several large DICOM files simultaneously |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1221 largeDicomLocker_.reset(new Semaphore::Locker(context.largeDicomThrottler_)); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1222 |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1223 std::string content; |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1224 context_.ReadDicom(content, instancePublicId); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1225 |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1226 // Release the throttle if loading "small" DICOM files (under |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1227 // 50MB, which is an arbitrary value) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1228 if (content.size() < 50 * 1024 * 1024) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1229 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1230 largeDicomLocker_.reset(NULL); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1231 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1232 |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1233 dicom_.reset(new ParsedDicomFile(content)); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1234 dicomSize_ = content.size(); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1235 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1236 |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1237 assert(accessor_.get() != NULL || |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1238 dicom_.get() != NULL); |
778
aebf0071020e
refactoring of the mutex for the dicom cache
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changeset
|
1239 } |
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refactoring of the mutex for the dicom cache
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diff
changeset
|
1240 |
aebf0071020e
refactoring of the mutex for the dicom cache
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changeset
|
1241 |
aebf0071020e
refactoring of the mutex for the dicom cache
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diff
changeset
|
1242 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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changeset
|
1243 { |
4457
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1244 if (dicom_.get() != NULL) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1245 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1246 try |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1247 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1248 context_.dicomCache_.Acquire(instancePublicId_, dicom_.release(), dicomSize_); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1249 context_.PublishDicomCacheMetrics(); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1250 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1251 catch (OrthancException&) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1252 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1253 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1254 } |
285
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1255 } |
304 | 1256 |
1257 | |
4457
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changeset
|
1258 ParsedDicomFile& ServerContext::DicomCacheLocker::GetDicom() const |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1259 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1260 if (dicom_.get() != NULL) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1261 { |
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|
1262 return *dicom_; |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1263 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1264 else |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1265 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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parents:
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diff
changeset
|
1266 assert(accessor_.get() != NULL); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1267 return accessor_->GetDicom(); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1268 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1269 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1270 |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1271 |
695
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1272 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
c59bc408fb10
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1273 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1274 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
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parents:
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|
1275 storeMD5_ = storeMD5; |
695
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1276 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1277 |
699
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
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|
1278 |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1279 bool ServerContext::AddAttachment(int64_t& newRevision, |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1280 const std::string& resourceId, |
699
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1281 FileContentType attachmentType, |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1282 const void* data, |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1283 size_t size, |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1284 bool hasOldRevision, |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1285 int64_t oldRevision, |
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1286 const std::string& oldMD5) |
699
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1287 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1288 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
2929e17f8447
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1289 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1290 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1291 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
2929e17f8447
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1292 |
5048
22966345eaba
skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents:
5044
diff
changeset
|
1293 StorageAccessor accessor(area_, &storageCache_, GetMetricsRegistry()); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1294 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1295 |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1296 try |
699
2929e17f8447
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1297 { |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1298 StoreStatus status = index_.AddAttachment( |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1299 newRevision, attachment, resourceId, hasOldRevision, oldRevision, oldMD5); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1300 if (status != StoreStatus_Success) |
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Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1301 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1302 accessor.Remove(attachment); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1303 return false; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1304 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1305 else |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1306 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1307 return true; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1308 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1309 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1310 catch (OrthancException&) |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1311 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1312 // Fixed in Orthanc 1.9.6 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1313 accessor.Remove(attachment); |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1314 throw; |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1315 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1316 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1317 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1318 |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1319 bool ServerContext::DeleteResource(Json::Value& remainingAncestor, |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1320 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1321 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1322 { |
2507 | 1323 if (expectedType == ResourceType_Instance) |
1324 { | |
1325 // remove the file from the DicomCache | |
1326 dicomCache_.Invalidate(uuid); | |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1327 PublishDicomCacheMetrics(); |
2507 | 1328 } |
1329 | |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1330 return index_.DeleteResource(remainingAncestor, uuid, expectedType); |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1331 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1332 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1333 |
1198 | 1334 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1335 { |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1336 if (change.GetResourceType() == ResourceType_Instance && |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1337 change.GetChangeType() == ChangeType_Deleted) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1338 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1339 dicomCache_.Invalidate(change.GetPublicId()); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1340 PublishDicomCacheMetrics(); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1341 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1342 |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
1343 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1344 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1345 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1346 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1347 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1348 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1349 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1350 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1351 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1352 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1353 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1354 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1355 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1356 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1357 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1358 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1359 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1360 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1361 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1362 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1363 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1364 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1365 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1366 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1367 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1368 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1369 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1370 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1371 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1372 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1373 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1374 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1375 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1376 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1377 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1378 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1379 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1380 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1381 throw OrthancException(ErrorCode_InternalError); |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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diff
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|
1382 } |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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diff
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|
1383 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1384 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1385 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1386 { |
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OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1387 if (HasPlugins()) |
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OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1388 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1389 return *plugins_; |
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OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1390 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1391 else |
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OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1392 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1393 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1394 } |
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OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1395 } |
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OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1396 |
1632
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diff
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|
1397 #endif |
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diff
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|
1398 |
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diff
changeset
|
1399 |
eb8fbcf008b5
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parents:
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diff
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|
1400 bool ServerContext::HasPlugins() const |
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fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1401 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
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|
1402 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
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diff
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|
1403 return (plugins_ != NULL); |
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fix build with plugins disabled
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diff
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|
1404 #else |
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diff
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|
1405 return false; |
eb8fbcf008b5
fix build with plugins disabled
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diff
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|
1406 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1407 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1408 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1409 |
4978
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1410 void ServerContext::Apply(ILookupVisitor& visitor, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
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|
1411 const DatabaseLookup& lookup, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1412 ResourceType queryLevel, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1413 size_t since, |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1414 size_t limit) |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1415 { |
3679
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1416 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
6358923d3ced
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1417 limitFindInstances_ : limitFindResults_); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1418 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1419 std::vector<std::string> resources, instances; |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1420 const DicomTagConstraint* dicomModalitiesConstraint = NULL; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1421 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1422 bool hasModalitiesInStudyLookup = (queryLevel == ResourceType_Study && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1423 lookup.GetConstraint(dicomModalitiesConstraint, DICOM_TAG_MODALITIES_IN_STUDY) && |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1424 ((dicomModalitiesConstraint->GetConstraintType() == ConstraintType_Equal && !dicomModalitiesConstraint->GetValue().empty()) || |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1425 (dicomModalitiesConstraint->GetConstraintType() == ConstraintType_List && !dicomModalitiesConstraint->GetValues().empty()))); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
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diff
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|
1426 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1427 std::unique_ptr<DatabaseLookup> fastLookup(lookup.Clone()); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1428 |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1429 if (hasModalitiesInStudyLookup) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1430 { |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1431 fastLookup->RemoveConstraint(DICOM_TAG_MODALITIES_IN_STUDY); |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1432 } |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1433 |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1434 { |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1435 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
1436 GetIndex().ApplyLookupResources(resources, &instances, *fastLookup, queryLevel, lookupLimit); |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1437 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
changeset
|
1438 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
1439 bool complete = (databaseLimit == 0 || |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1440 resources.size() <= databaseLimit); |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1441 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3003
diff
changeset
|
1442 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1443 |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1444 /** |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1445 * "resources" contains the Orthanc ID of the resource at level |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1446 * "queryLevel", "instances" contains one the Orthanc ID of one |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1447 * sample instance from this resource. |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1448 **/ |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1449 assert(resources.size() == instances.size()); |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1450 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1451 size_t countResults = 0; |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1452 size_t skipped = 0; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1453 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1454 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1455 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1456 for (size_t i = 0; i < instances.size(); i++) |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1457 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1458 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1459 // the disk if only "main DICOM tags" are to be returned |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1460 |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1461 boost::shared_ptr<Json::Value> dicomAsJson; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1462 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1463 bool hasOnlyMainDicomTags; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1464 DicomMap dicom; |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
1465 DicomMap allMainDicomTagsFromDB; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1466 |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1467 if (!IsStorageAccessAllowedForAnswers(findStorageAccessMode_) |
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1468 || fastLookup->HasOnlyMainDicomTags()) |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1469 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1470 // Case (1): The main DICOM tags, as stored in the database, |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1471 // are sufficient to look for match |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1472 |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
1473 if (!GetIndex().GetAllMainDicomTags(allMainDicomTagsFromDB, instances[i])) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1474 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1475 // The instance has been removed during the execution of the |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1476 // lookup, ignore it |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1477 continue; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1478 } |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1479 |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1480 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1481 // level of interest for the query |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1482 switch (queryLevel) |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1483 { |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
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|
1484 // WARNING: Don't reorder cases below, and don't add "break" |
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1485 case ResourceType_Instance: |
4937
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Alain Mazy <am@osimis.io>
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|
1486 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Instance); |
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1487 |
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|
1488 case ResourceType_Series: |
4937
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Alain Mazy <am@osimis.io>
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diff
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|
1489 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Series); |
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1490 |
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|
1491 case ResourceType_Study: |
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1492 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Study); |
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1493 |
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|
1494 case ResourceType_Patient: |
4937
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Alain Mazy <am@osimis.io>
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|
1495 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Patient); |
3679
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|
1496 break; |
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1497 |
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|
1498 default: |
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|
1499 throw OrthancException(ErrorCode_InternalError); |
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1500 } |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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3012
diff
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|
1501 |
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diff
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|
1502 hasOnlyMainDicomTags = true; |
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|
1503 } |
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diff
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|
1504 else |
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parents:
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diff
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|
1505 { |
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diff
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|
1506 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
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|
1507 // the storage area |
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|
1508 dicomAsJson.reset(new Json::Value); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1509 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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|
1510 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1511 dicom.FromDicomAsJson(*dicomAsJson); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1512 |
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|
1513 // This map contains the entire JSON, i.e. more than the main DICOM tags |
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|
1514 hasOnlyMainDicomTags = false; |
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|
1515 } |
1757
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|
1516 |
4978
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Alain Mazy <am@osimis.io>
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diff
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|
1517 if (fastLookup->IsMatch(dicom)) |
1757
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ServerContext::Apply lookup
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|
1518 { |
4978
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|
1519 bool isMatch = true; |
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|
1520 |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1521 if (hasModalitiesInStudyLookup) |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1522 { |
4978
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1523 std::set<DicomTag> requestedTags; |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1524 requestedTags.insert(DICOM_TAG_MODALITIES_IN_STUDY); |
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Alain Mazy <am@osimis.io>
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|
1525 ExpandedResource resource; |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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|
1526 ComputeStudyTags(resource, *this, resources[i], requestedTags); |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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|
1527 |
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Alain Mazy <am@osimis.io>
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|
1528 std::vector<std::string> modalities; |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1529 Toolbox::TokenizeString(modalities, resource.tags_.GetValue(DICOM_TAG_MODALITIES_IN_STUDY).GetContent(), '\\'); |
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|
1530 bool hasAtLeastOneModalityMatching = false; |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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|
1531 for (size_t m = 0; m < modalities.size(); m++) |
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|
1532 { |
4978
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|
1533 hasAtLeastOneModalityMatching |= dicomModalitiesConstraint->IsMatch(modalities[m]); |
3012
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|
1534 } |
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diff
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|
1535 |
4978
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diff
changeset
|
1536 isMatch = isMatch && hasAtLeastOneModalityMatching; |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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diff
changeset
|
1537 // copy the value of ModalitiesInStudy such that it can be reused to build the answer |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1538 allMainDicomTagsFromDB.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, resource.tags_.GetValue(DICOM_TAG_MODALITIES_IN_STUDY)); |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1539 } |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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diff
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|
1540 |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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diff
changeset
|
1541 if (isMatch) |
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diff
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|
1542 { |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1543 if (skipped < since) |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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|
1544 { |
4978
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1545 skipped++; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1546 } |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1547 else if (limit != 0 && |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1548 countResults >= limit) |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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diff
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|
1549 { |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
changeset
|
1550 // Too many results, don't mark as complete |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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|
1551 complete = false; |
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1552 break; |
3012
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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|
1553 } |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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|
1554 else |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
changeset
|
1555 { |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
1556 if (IsStorageAccessAllowedForAnswers(findStorageAccessMode_) && |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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diff
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|
1557 dicomAsJson.get() == NULL && |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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diff
changeset
|
1558 isDicomAsJsonNeeded) |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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diff
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|
1559 { |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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diff
changeset
|
1560 dicomAsJson.reset(new Json::Value); |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
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diff
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|
1561 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1562 } |
3012
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|
1563 |
4978
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|
1564 if (hasOnlyMainDicomTags) |
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|
1565 { |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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diff
changeset
|
1566 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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changeset
|
1567 visitor.Visit(resources[i], instances[i], allMainDicomTagsFromDB, dicomAsJson.get()); |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1568 } |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1569 else |
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|
1570 { |
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|
1571 // Remove the non-main DICOM tags from "dicom" if Case (2) |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1572 // was used, for consistency with Case (1) |
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|
1573 |
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|
1574 DicomMap mainDicomTags; |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1575 mainDicomTags.ExtractMainDicomTags(dicom); |
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|
1576 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
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Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
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|
1577 } |
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|
1578 |
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|
1579 countResults ++; |
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|
1580 } |
1757
98abb8d7f905
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diff
changeset
|
1581 } |
98abb8d7f905
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parents:
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diff
changeset
|
1582 } |
98abb8d7f905
ServerContext::Apply lookup
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parents:
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diff
changeset
|
1583 } |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1584 |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1585 if (complete) |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1586 { |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1587 visitor.MarkAsComplete(); |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1588 } |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1589 |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1590 LOG(INFO) << "Number of matching resources: " << countResults; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1591 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1592 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1593 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1594 const std::string& publicId, |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4457
diff
changeset
|
1595 ResourceType level, |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1596 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1597 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1598 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1599 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1600 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1601 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1602 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1603 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1604 { |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1605 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1606 if (index_.LookupMetadata(target, revision, publicId, level, metadata)) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1607 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1608 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1609 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1610 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1611 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1612 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1613 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1614 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1615 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1616 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1617 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1618 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1619 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1620 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1621 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1622 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1623 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1624 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1625 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1626 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1627 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1628 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1629 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1630 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1631 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1632 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1633 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1634 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1635 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1636 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1637 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1638 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1639 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1640 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1641 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1642 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1643 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1644 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1645 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1646 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1647 // Store for reuse |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1648 index_.OverwriteMetadata(publicId, metadata, target); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1649 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1650 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1651 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1652 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1653 // Should never happen |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1654 return false; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1655 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1656 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1657 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1658 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1659 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1660 // No backward |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1661 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1662 return index_.LookupMetadata(target, revision, publicId, level, metadata); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1663 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1664 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1665 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1666 |
2626 | 1667 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1668 const std::string& publicId) | |
1669 { | |
1670 std::list<std::string> instances; | |
1671 GetIndex().GetChildInstances(instances, publicId); | |
1672 | |
1673 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1674 | |
1675 for (std::list<std::string>::const_iterator | |
1676 it = instances.begin(); it != instances.end(); ++it) | |
1677 { | |
1678 job.AddInstance(*it); | |
1679 } | |
1680 } | |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1681 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1682 |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1683 void ServerContext::SignalUpdatedModalities() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1684 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1685 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1686 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1687 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1688 GetPlugins().SignalUpdatedModalities(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1689 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1690 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1691 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1692 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1693 |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1694 void ServerContext::SignalUpdatedPeers() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1695 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1696 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1697 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1698 { |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1699 GetPlugins().SignalUpdatedPeers(); |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
1700 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1701 #endif |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
1702 } |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1703 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1704 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1705 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1706 ServerContext::CreateStorageCommitment(const std::string& jobId, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1707 const std::string& transactionUid, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1708 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1709 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1710 const std::string& remoteAet, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1711 const std::string& calledAet) |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1712 { |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1713 #if ORTHANC_ENABLE_PLUGINS == 1 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1714 if (HasPlugins()) |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1715 { |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1716 return GetPlugins().CreateStorageCommitment( |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1717 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1718 } |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1719 #endif |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1720 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1721 return NULL; |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1722 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1723 |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1724 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1725 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1726 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1727 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1728 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1729 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1730 // Use Orthanc's built-in decoder, using the cache to speed-up |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1731 // things on multi-frame images |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1732 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1733 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1734 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1735 { |
4274 | 1736 ServerContext::DicomCacheLocker locker(*this, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1737 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1738 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1739 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1740 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1741 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1742 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1743 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1744 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1745 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1746 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1747 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1748 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1749 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1750 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1751 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1752 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1753 // TODO: Store the raw buffer in the DicomCacheLocker |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1754 std::string dicomContent; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1755 ReadDicom(dicomContent, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1756 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1757 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1758 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1759 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1760 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1761 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1762 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1763 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1764 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1765 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1766 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1767 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1768 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1769 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1770 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1771 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1772 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1773 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1774 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1775 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1776 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1777 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1778 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1779 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1780 ServerContext::DicomCacheLocker locker(*this, publicId); |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4196
diff
changeset
|
1781 return locker.GetDicom().DecodeFrame(frameIndex); |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1782 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1783 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1784 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1785 return NULL; // Built-in decoder is disabled |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1786 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1787 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1788 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1789 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1790 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1791 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1792 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1793 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1794 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1795 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1796 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1797 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
1798 decoded.reset(dicom.DecodeFrame(frameIndex)); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1799 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1800 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1801 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1802 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1803 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1804 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1805 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1806 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1807 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1808 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1809 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1810 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1811 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1812 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1813 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1814 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1815 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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changeset
|
1816 { |
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diff
changeset
|
1817 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1818 } |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1819 catch (OrthancException& e) |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1820 { |
f9eaf14d3d19
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|
1821 } |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1822 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1823 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1824 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1825 return decoded.release(); |
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ServerContext::DecodeDicomFrame()
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diff
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|
1826 } |
3931
e6606d3ec892
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1827 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1828 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1829 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1830 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1831 } |
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ServerContext::DecodeDicomFrame()
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diff
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|
1832 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1833 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1834 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1835 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1836 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
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4506
diff
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|
1837 return dicom.DecodeFrame(frameIndex); |
3931
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Sebastien Jodogne <s.jodogne@gmail.com>
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1838 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1839 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1840 { |
e6606d3ec892
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1841 return NULL; |
e6606d3ec892
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1842 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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1843 } |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1844 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1845 |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1846 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1847 size_t size, |
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Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1848 unsigned int frameIndex) |
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Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1849 { |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
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4507
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changeset
|
1850 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(dicom, size)); |
8f9090b137f1
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1851 return DecodeDicomFrame(*instance, frameIndex); |
3980
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|
1852 } |
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|
1853 |
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Fix decoding of DICOM images for plugins
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changeset
|
1854 |
3894
8f7ad4989fec
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|
1855 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
8f7ad4989fec
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|
1856 std::string& sopInstanceUid, |
8f7ad4989fec
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1857 DicomStoreUserConnection& connection, |
8f7ad4989fec
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|
1858 const std::string& dicom, |
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|
1859 bool hasMoveOriginator, |
8f7ad4989fec
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changeset
|
1860 const std::string& moveOriginatorAet, |
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changeset
|
1861 uint16_t moveOriginatorId) |
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|
1862 { |
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|
1863 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
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diff
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|
1864 |
3911
0ef7f4528be2
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1865 if (!transcodeDicomProtocol_ || |
3894
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diff
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|
1866 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
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|
1867 { |
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|
1868 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
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1869 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
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1870 } |
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1871 else |
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diff
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|
1872 { |
4465
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
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parents:
4460
diff
changeset
|
1873 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), preferredTransferSyntax_, |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
1874 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
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1875 } |
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|
1876 } |
3930
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diff
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|
1877 |
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|
1878 |
3944
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|
1879 bool ServerContext::Transcode(DicomImage& target, |
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|
1880 DicomImage& source /* in, "GetParsed()" possibly modified */, |
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|
1881 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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|
1882 bool allowNewSopInstanceUid) |
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|
1883 { |
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1884 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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|
1885 { |
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diff
changeset
|
1886 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
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|
1887 { |
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|
1888 return true; |
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|
1889 } |
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|
1890 } |
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1891 |
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|
1892 #if ORTHANC_ENABLE_PLUGINS == 1 |
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|
1893 if (HasPlugins() && |
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diff
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|
1894 GetPlugins().HasCustomTranscoder()) |
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|
1895 { |
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parents:
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diff
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|
1896 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
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|
1897 { |
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diff
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|
1898 return true; |
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|
1899 } |
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|
1900 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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|
1901 { |
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diff
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|
1902 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
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|
1903 << "fallback to the built-in DCMTK transcoder"; |
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diff
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|
1904 } |
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diff
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|
1905 } |
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diff
changeset
|
1906 #endif |
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diff
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|
1907 |
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parents:
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|
1908 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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preparing simplified interface for IDicomTranscoder
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|
1909 { |
3951
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parents:
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diff
changeset
|
1910 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
3944
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|
1911 } |
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|
1912 else |
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|
1913 { |
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|
1914 return false; |
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1915 } |
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|
1916 } |
4375
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New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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|
1917 |
4376
b002f9abe802
review of changeset 4375:208029732d51
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diff
changeset
|
1918 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const |
4375
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Mark Poscablo <Mark.Poscablo@varian.com>
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diff
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|
1919 { |
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New config option "DeidentifyDimseQueryLogs"
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diff
changeset
|
1920 static const std::string redactedContent = "*** POTENTIAL PHI ***"; |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
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diff
changeset
|
1921 static const std::string emptyContent = ""; |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1922 |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1923 const DicomTag& tag = element.GetTag(); |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1924 if (element.GetValue().IsSequence()) |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1925 { |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1926 return emptyContent; |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1927 } |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
1928 |
4789
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4752
diff
changeset
|
1929 if (deidentifyLogs_ && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4752
diff
changeset
|
1930 !element.GetValue().GetContent().empty() && |
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4752
diff
changeset
|
1931 logsDeidentifierRules_.IsAlteredTag(tag)) |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1932 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1933 return redactedContent; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1934 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1935 else |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1936 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1937 return element.GetValue().GetContent(); |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1938 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1939 } |
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1940 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1941 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1942 void ServerContext::GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1943 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1944 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1945 syntaxes = acceptedTransferSyntaxes_; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1946 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1947 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1948 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1949 void ServerContext::SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1950 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1951 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1952 acceptedTransferSyntaxes_ = syntaxes; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1953 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1954 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1955 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1956 bool ServerContext::IsUnknownSopClassAccepted() |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1957 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1958 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1959 return isUnknownSopClassAccepted_; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1960 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1961 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1962 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1963 void ServerContext::SetUnknownSopClassAccepted(bool accepted) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1964 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1965 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1966 isUnknownSopClassAccepted_ = accepted; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1967 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1968 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1969 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1970 static void SerializeExpandedResource(Json::Value& target, |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1971 const ExpandedResource& resource, |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
1972 DicomToJsonFormat format, |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
1973 const std::set<DicomTag>& requestedTags) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1974 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1975 target = Json::objectValue; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1976 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1977 target["Type"] = GetResourceTypeText(resource.type_, false, true); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1978 target["ID"] = resource.id_; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1979 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1980 switch (resource.type_) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1981 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1982 case ResourceType_Patient: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1983 break; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1984 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1985 case ResourceType_Study: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1986 target["ParentPatient"] = resource.parentId_; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1987 break; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1988 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1989 case ResourceType_Series: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1990 target["ParentStudy"] = resource.parentId_; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1991 break; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1992 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1993 case ResourceType_Instance: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1994 target["ParentSeries"] = resource.parentId_; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1995 break; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1996 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1997 default: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1998 throw OrthancException(ErrorCode_InternalError); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
1999 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2000 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2001 switch (resource.type_) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2002 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2003 case ResourceType_Patient: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2004 case ResourceType_Study: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2005 case ResourceType_Series: |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2006 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2007 Json::Value c = Json::arrayValue; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2008 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2009 for (std::list<std::string>::const_iterator |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2010 it = resource.childrenIds_.begin(); it != resource.childrenIds_.end(); ++it) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2011 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2012 c.append(*it); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2013 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2014 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2015 if (resource.type_ == ResourceType_Patient) |
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2016 { |
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|
2017 target["Studies"] = c; |
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|
2018 } |
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|
2019 else if (resource.type_ == ResourceType_Study) |
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2020 { |
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|
2021 target["Series"] = c; |
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2022 } |
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|
2023 else |
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|
2024 { |
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2025 target["Instances"] = c; |
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|
2026 } |
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|
2027 break; |
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|
2028 } |
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|
2029 |
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|
2030 case ResourceType_Instance: |
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|
2031 break; |
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|
2032 |
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|
2033 default: |
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|
2034 throw OrthancException(ErrorCode_InternalError); |
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2035 } |
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2036 |
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|
2037 switch (resource.type_) |
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2038 { |
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2039 case ResourceType_Patient: |
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2040 case ResourceType_Study: |
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|
2041 break; |
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|
2042 |
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|
2043 case ResourceType_Series: |
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|
2044 if (resource.expectedNumberOfInstances_ < 0) |
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|
2045 { |
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parents:
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|
2046 target["ExpectedNumberOfInstances"] = Json::nullValue; |
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|
2047 } |
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|
2048 else |
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|
2049 { |
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|
2050 target["ExpectedNumberOfInstances"] = resource.expectedNumberOfInstances_; |
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|
2051 } |
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|
2052 target["Status"] = resource.status_; |
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|
2053 break; |
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|
2054 |
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|
2055 case ResourceType_Instance: |
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|
2056 { |
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|
2057 target["FileSize"] = static_cast<unsigned int>(resource.fileSize_); |
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|
2058 target["FileUuid"] = resource.fileUuid_; |
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|
2059 |
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|
2060 if (resource.indexInSeries_ < 0) |
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|
2061 { |
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|
2062 target["IndexInSeries"] = Json::nullValue; |
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|
2063 } |
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|
2064 else |
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|
2065 { |
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|
2066 target["IndexInSeries"] = resource.indexInSeries_; |
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|
2067 } |
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|
2068 |
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|
2069 break; |
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|
2070 } |
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|
2071 |
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|
2072 default: |
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|
2073 throw OrthancException(ErrorCode_InternalError); |
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|
2074 } |
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changeset
|
2075 |
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|
2076 if (!resource.anonymizedFrom_.empty()) |
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parents:
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changeset
|
2077 { |
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|
2078 target["AnonymizedFrom"] = resource.anonymizedFrom_; |
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|
2079 } |
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|
2080 |
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parents:
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changeset
|
2081 if (!resource.modifiedFrom_.empty()) |
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|
2082 { |
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|
2083 target["ModifiedFrom"] = resource.modifiedFrom_; |
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|
2084 } |
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|
2085 |
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|
2086 if (resource.type_ == ResourceType_Patient || |
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|
2087 resource.type_ == ResourceType_Study || |
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|
2088 resource.type_ == ResourceType_Series) |
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changeset
|
2089 { |
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|
2090 target["IsStable"] = resource.isStable_; |
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|
2091 |
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|
2092 if (!resource.lastUpdate_.empty()) |
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|
2093 { |
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|
2094 target["LastUpdate"] = resource.lastUpdate_; |
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|
2095 } |
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|
2096 } |
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|
2097 |
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changeset
|
2098 // serialize tags |
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|
2099 |
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|
2100 static const char* const MAIN_DICOM_TAGS = "MainDicomTags"; |
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|
2101 static const char* const PATIENT_MAIN_DICOM_TAGS = "PatientMainDicomTags"; |
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|
2102 |
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|
2103 DicomMap mainDicomTags; |
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|
2104 resource.tags_.ExtractResourceInformation(mainDicomTags, resource.type_); |
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|
2105 |
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|
2106 target[MAIN_DICOM_TAGS] = Json::objectValue; |
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|
2107 FromDcmtkBridge::ToJson(target[MAIN_DICOM_TAGS], mainDicomTags, format); |
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split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2108 |
acd3f72e2a21
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Alain Mazy <am@osimis.io>
parents:
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diff
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|
2109 if (resource.type_ == ResourceType_Study) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
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|
2110 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
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|
2111 DicomMap patientMainDicomTags; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
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diff
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|
2112 resource.tags_.ExtractPatientInformation(patientMainDicomTags); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2113 |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
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|
2114 target[PATIENT_MAIN_DICOM_TAGS] = Json::objectValue; |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2115 FromDcmtkBridge::ToJson(target[PATIENT_MAIN_DICOM_TAGS], patientMainDicomTags, format); |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
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|
2116 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2117 |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2118 if (requestedTags.size() > 0) |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2119 { |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
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|
2120 static const char* const REQUESTED_TAGS = "RequestedTags"; |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2121 |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2122 DicomMap tags; |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
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|
2123 resource.tags_.ExtractTags(tags, requestedTags); |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2124 |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
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|
2125 target[REQUESTED_TAGS] = Json::objectValue; |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
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|
2126 FromDcmtkBridge::ToJson(target[REQUESTED_TAGS], tags, format); |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
2127 |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2128 } |
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents:
4935
diff
changeset
|
2129 |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
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changeset
|
2130 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
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|
2131 |
acd3f72e2a21
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Alain Mazy <am@osimis.io>
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|
2132 |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
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diff
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|
2133 static void ComputeInstanceTags(ExpandedResource& resource, |
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Alain Mazy <am@osimis.io>
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|
2134 ServerContext& context, |
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|
2135 const std::string& instancePublicId, |
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Alain Mazy <am@osimis.io>
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|
2136 const std::set<DicomTag>& requestedTags) |
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Alain Mazy <am@osimis.io>
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|
2137 { |
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new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
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|
2138 if (requestedTags.count(DICOM_TAG_INSTANCE_AVAILABILITY) > 0) |
f377d5643538
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Alain Mazy <am@osimis.io>
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4941
diff
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|
2139 { |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
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diff
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|
2140 resource.tags_.SetValue(DICOM_TAG_INSTANCE_AVAILABILITY, "ONLINE", false); |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
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|
2141 resource.missingRequestedTags_.erase(DICOM_TAG_INSTANCE_AVAILABILITY); |
f377d5643538
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Alain Mazy <am@osimis.io>
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diff
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|
2142 } |
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new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2143 } |
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2144 |
f377d5643538
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Alain Mazy <am@osimis.io>
parents:
4941
diff
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|
2145 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
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diff
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|
2146 static void ComputeSeriesTags(ExpandedResource& resource, |
304514ce84ee
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Alain Mazy <am@osimis.io>
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|
2147 ServerContext& context, |
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Alain Mazy <am@osimis.io>
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|
2148 const std::string& seriesPublicId, |
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Alain Mazy <am@osimis.io>
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|
2149 const std::set<DicomTag>& requestedTags) |
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Alain Mazy <am@osimis.io>
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4939
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|
2150 { |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
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|
2151 if (requestedTags.count(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES) > 0) |
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Alain Mazy <am@osimis.io>
parents:
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diff
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|
2152 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2153 ServerIndex& index = context.GetIndex(); |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2154 std::list<std::string> instances; |
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Alain Mazy <am@osimis.io>
parents:
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|
2155 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2156 index.GetChildren(instances, seriesPublicId); |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2157 |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
diff
changeset
|
2158 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES, |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2159 boost::lexical_cast<std::string>(instances.size()), false); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2160 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES); |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2161 } |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2162 } |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2163 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2164 static void ComputeStudyTags(ExpandedResource& resource, |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2165 ServerContext& context, |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2166 const std::string& studyPublicId, |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2167 const std::set<DicomTag>& requestedTags) |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2168 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2169 ServerIndex& index = context.GetIndex(); |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
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|
2170 std::list<std::string> series; |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2171 std::list<std::string> instances; |
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Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2172 |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
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diff
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|
2173 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) > 0; |
304514ce84ee
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Alain Mazy <am@osimis.io>
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4939
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|
2174 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) > 0; |
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Alain Mazy <am@osimis.io>
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|
2175 bool hasModalitiesInStudy = requestedTags.count(DICOM_TAG_MODALITIES_IN_STUDY) > 0; |
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Alain Mazy <am@osimis.io>
parents:
4939
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|
2176 bool hasSopClassesInStudy = requestedTags.count(DICOM_TAG_SOP_CLASSES_IN_STUDY) > 0; |
304514ce84ee
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Alain Mazy <am@osimis.io>
parents:
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diff
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|
2177 |
304514ce84ee
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diff
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|
2178 index.GetChildren(series, studyPublicId); |
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Alain Mazy <am@osimis.io>
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|
2179 |
304514ce84ee
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Alain Mazy <am@osimis.io>
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|
2180 if (hasModalitiesInStudy) |
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|
2181 { |
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|
2182 std::set<std::string> values; |
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|
2183 |
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|
2184 for (std::list<std::string>::const_iterator |
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|
2185 it = series.begin(); it != series.end(); ++it) |
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|
2186 { |
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|
2187 DicomMap tags; |
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|
2188 index.GetMainDicomTags(tags, *it, ResourceType_Series, ResourceType_Series); |
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|
2189 |
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|
2190 const DicomValue* value = tags.TestAndGetValue(DICOM_TAG_MODALITY); |
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|
2191 |
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|
2192 if (value != NULL && |
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|
2193 !value->IsNull() && |
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|
2194 !value->IsBinary()) |
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|
2195 { |
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|
2196 values.insert(value->GetContent()); |
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|
2197 } |
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|
2198 } |
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|
2199 |
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|
2200 std::string modalities; |
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|
2201 Toolbox::JoinStrings(modalities, values, "\\"); |
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2202 |
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2203 resource.tags_.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, modalities, false); |
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2204 resource.missingRequestedTags_.erase(DICOM_TAG_MODALITIES_IN_STUDY); |
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2205 } |
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2206 |
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2207 if (hasNbRelatedSeries) |
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2208 { |
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2209 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES, |
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2210 boost::lexical_cast<std::string>(series.size()), false); |
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2211 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES); |
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2212 } |
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2213 |
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2214 if (hasNbRelatedInstances || hasSopClassesInStudy) |
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2215 { |
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2216 for (std::list<std::string>::const_iterator |
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2217 it = series.begin(); it != series.end(); ++it) |
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2218 { |
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2219 std::list<std::string> seriesInstancesIds; |
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2220 index.GetChildren(seriesInstancesIds, *it); |
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2221 |
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2222 instances.splice(instances.end(), seriesInstancesIds); |
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2223 } |
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2224 |
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2225 if (hasNbRelatedInstances) |
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2226 { |
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2227 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES, |
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2228 boost::lexical_cast<std::string>(instances.size()), false); |
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2229 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES); |
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2230 } |
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2231 |
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2232 if (hasSopClassesInStudy) |
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2233 { |
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2234 std::set<std::string> values; |
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2235 |
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2236 for (std::list<std::string>::const_iterator |
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2237 it = instances.begin(); it != instances.end(); ++it) |
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2238 { |
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2239 std::string value; |
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2240 |
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2241 if (context.LookupOrReconstructMetadata(value, *it, ResourceType_Instance, MetadataType_Instance_SopClassUid)) |
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2242 { |
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2243 values.insert(value); |
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2244 } |
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2245 } |
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2246 |
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2247 if (values.size() > 0) |
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2248 { |
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2249 std::string sopClassUids; |
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2250 Toolbox::JoinStrings(sopClassUids, values, "\\"); |
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2251 resource.tags_.SetValue(DICOM_TAG_SOP_CLASSES_IN_STUDY, sopClassUids, false); |
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2252 } |
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2253 |
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2254 resource.missingRequestedTags_.erase(DICOM_TAG_SOP_CLASSES_IN_STUDY); |
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2255 } |
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2256 } |
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2257 } |
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2258 |
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2259 static void ComputePatientTags(ExpandedResource& resource, |
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2260 ServerContext& context, |
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2261 const std::string& patientPublicId, |
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2262 const std::set<DicomTag>& requestedTags) |
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2263 { |
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2264 ServerIndex& index = context.GetIndex(); |
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2265 |
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2266 std::list<std::string> studies; |
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2267 std::list<std::string> series; |
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2268 std::list<std::string> instances; |
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2269 |
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2270 bool hasNbRelatedStudies = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) > 0; |
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2271 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) > 0; |
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2272 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES) > 0; |
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2273 |
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2274 index.GetChildren(studies, patientPublicId); |
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2275 |
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2276 if (hasNbRelatedStudies) |
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2277 { |
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2278 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES, |
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2279 boost::lexical_cast<std::string>(studies.size()), false); |
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2280 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES); |
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2281 } |
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2282 |
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2283 if (hasNbRelatedSeries || hasNbRelatedInstances) |
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2284 { |
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2285 for (std::list<std::string>::const_iterator |
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2286 it = studies.begin(); it != studies.end(); ++it) |
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2287 { |
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2288 std::list<std::string> thisSeriesIds; |
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2289 index.GetChildren(thisSeriesIds, *it); |
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2290 series.splice(series.end(), thisSeriesIds); |
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2291 } |
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2292 |
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2293 if (hasNbRelatedSeries) |
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2294 { |
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2295 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES, |
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2296 boost::lexical_cast<std::string>(series.size()), false); |
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2297 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES); |
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2298 } |
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2299 } |
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2300 |
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2301 if (hasNbRelatedInstances) |
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2302 { |
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|
2303 for (std::list<std::string>::const_iterator |
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2304 it = series.begin(); it != series.end(); ++it) |
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2305 { |
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|
2306 std::list<std::string> thisInstancesIds; |
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2307 index.GetChildren(thisInstancesIds, *it); |
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|
2308 instances.splice(instances.end(), thisInstancesIds); |
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2309 } |
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2310 |
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|
2311 resource.tags_.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES, |
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|
2312 boost::lexical_cast<std::string>(instances.size()), false); |
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2313 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES); |
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2314 } |
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2315 } |
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2316 |
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2317 |
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2318 static void ComputeTags(ExpandedResource& resource, |
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2319 ServerContext& context, |
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2320 const std::string& resourceId, |
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2321 ResourceType level, |
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2322 const std::set<DicomTag>& requestedTags) |
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2323 { |
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2324 if (level == ResourceType_Patient |
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2325 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Patient)) |
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2326 { |
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2327 ComputePatientTags(resource, context, resourceId, requestedTags); |
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2328 } |
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|
2329 |
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2330 if (level == ResourceType_Study |
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2331 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Study)) |
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|
2332 { |
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|
2333 ComputeStudyTags(resource, context, resourceId, requestedTags); |
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2334 } |
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|
2335 |
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|
2336 if (level == ResourceType_Series |
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2337 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Series)) |
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2338 { |
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2339 ComputeSeriesTags(resource, context, resourceId, requestedTags); |
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|
2340 } |
4944
f377d5643538
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Alain Mazy <am@osimis.io>
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|
2341 |
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|
2342 if (level == ResourceType_Instance |
f377d5643538
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2343 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Instance)) |
f377d5643538
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Alain Mazy <am@osimis.io>
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|
2344 { |
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Alain Mazy <am@osimis.io>
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|
2345 ComputeInstanceTags(resource, context, resourceId, requestedTags); |
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Alain Mazy <am@osimis.io>
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2346 } |
4940
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2347 } |
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2348 |
4935
acd3f72e2a21
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Alain Mazy <am@osimis.io>
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diff
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|
2349 bool ServerContext::ExpandResource(Json::Value& target, |
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Alain Mazy <am@osimis.io>
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2350 const std::string& publicId, |
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Alain Mazy <am@osimis.io>
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|
2351 ResourceType level, |
4936
8422e4f99a18
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
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4935
diff
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|
2352 DicomToJsonFormat format, |
5058
d4e5ca0c9307
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Alain Mazy <am@osimis.io>
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|
2353 const std::set<DicomTag>& requestedTags, |
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Alain Mazy <am@osimis.io>
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|
2354 bool allowStorageAccess) |
4935
acd3f72e2a21
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Alain Mazy <am@osimis.io>
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|
2355 { |
4937
3f9b9865c8cc
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|
2356 std::string unusedInstanceId; |
4940
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2357 Json::Value* unusedDicomAsJson = NULL; |
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|
2358 DicomMap unusedMainDicomTags; |
4937
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2359 |
5058
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|
2360 return ExpandResource(target, publicId, unusedMainDicomTags, unusedInstanceId, unusedDicomAsJson, level, format, requestedTags, allowStorageAccess); |
4937
3f9b9865c8cc
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|
2361 } |
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
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|
2362 |
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|
2363 bool ServerContext::ExpandResource(Json::Value& target, |
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|
2364 const std::string& publicId, |
4940
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2365 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available) |
4939 | 2366 const std::string& instanceId, // optional: the id of an instance for the resource (if already available) |
5060
e69a3ff39bc5
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Alain Mazy <am@osimis.io>
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diff
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|
2367 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available) |
4937
3f9b9865c8cc
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|
2368 ResourceType level, |
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|
2369 DicomToJsonFormat format, |
5058
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Alain Mazy <am@osimis.io>
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|
2370 const std::set<DicomTag>& requestedTags, |
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Alain Mazy <am@osimis.io>
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|
2371 bool allowStorageAccess) |
4937
3f9b9865c8cc
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Alain Mazy <am@osimis.io>
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|
2372 { |
4935
acd3f72e2a21
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Alain Mazy <am@osimis.io>
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|
2373 ExpandedResource resource; |
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2374 |
5058
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|
2375 if (ExpandResource(resource, publicId, mainDicomTags, instanceId, dicomAsJson, level, requestedTags, ExpandResourceDbFlags_Default, allowStorageAccess)) |
4939 | 2376 { |
2377 SerializeExpandedResource(target, resource, format, requestedTags); | |
2378 return true; | |
2379 } | |
2380 | |
2381 return false; | |
2382 } | |
2383 | |
2384 bool ServerContext::ExpandResource(ExpandedResource& resource, | |
2385 const std::string& publicId, | |
4940
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2386 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available) |
4939 | 2387 const std::string& instanceId, // optional: the id of an instance for the resource (if already available) |
4940
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|
2388 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available) |
4939 | 2389 ResourceType level, |
4940
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|
2390 const std::set<DicomTag>& requestedTags, |
5058
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|
2391 ExpandResourceDbFlags expandFlags, |
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|
2392 bool allowStorageAccess) |
4939 | 2393 { |
4940
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|
2394 // first try to get the tags from what is already available |
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|
2395 |
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|
2396 if ((expandFlags & ExpandResourceDbFlags_IncludeMainDicomTags) |
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2397 && (mainDicomTags.GetSize() > 0) |
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2398 && (dicomAsJson != NULL)) |
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|
2399 { |
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|
2400 |
4984 | 2401 resource.tags_.Merge(mainDicomTags); |
4940
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2402 |
4984 | 2403 if (dicomAsJson->isObject()) |
4940
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2404 { |
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|
2405 resource.tags_.FromDicomAsJson(*dicomAsJson); |
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2406 } |
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2407 |
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|
2408 std::set<DicomTag> retrievedTags; |
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2409 std::set<DicomTag> missingTags; |
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changeset
|
2410 resource.tags_.GetTags(retrievedTags); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2411 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2412 Toolbox::GetMissingsFromSet(missingTags, requestedTags, retrievedTags); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2413 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2414 // if all possible tags have been read, no need to get them from DB anymore |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2415 if (missingTags.size() == 0 || DicomMap::HasOnlyComputedTags(missingTags)) |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2416 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2417 expandFlags = static_cast<ExpandResourceDbFlags>(expandFlags & ~ExpandResourceDbFlags_IncludeMainDicomTags); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2418 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2419 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2420 if (missingTags.size() == 0 && expandFlags == ExpandResourceDbFlags_None) // we have already retrieved anything we need |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2421 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2422 return true; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2423 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2424 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2425 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2426 if (expandFlags != ExpandResourceDbFlags_None |
4978
2cfa50d8eb60
Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents:
4977
diff
changeset
|
2427 && GetIndex().ExpandResource(resource, publicId, level, requestedTags, static_cast<ExpandResourceDbFlags>(expandFlags | ExpandResourceDbFlags_IncludeMetadata))) // we always need the metadata to get the mainDicomTagsSignature |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2428 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2429 // check the main dicom tags list has not changed since the resource was stored |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2430 if (resource.mainDicomTagsSignature_ != DicomMap::GetMainDicomTagsSignature(resource.type_)) |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2431 { |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2432 OrthancConfiguration::ReaderLock lock; |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2433 if (lock.GetConfiguration().IsWarningEnabled(Warnings_002_InconsistentDicomTagsInDb)) |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2434 { |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2435 LOG(WARNING) << "W002: " << Orthanc::GetResourceTypeText(resource.type_, false , false) << " has been stored with another version of Main Dicom Tags list, you should POST to /" << Orthanc::GetResourceTypeText(resource.type_, true, false) << "/" << resource.id_ << "/reconstruct to update the list of tags saved in DB. Some MainDicomTags might be missing from this answer."; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2436 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2437 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2438 |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2439 // possibly merge missing requested tags from dicom-as-json |
5058
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2440 if (allowStorageAccess |
d4e5ca0c9307
Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents:
5048
diff
changeset
|
2441 && !resource.missingRequestedTags_.empty() && !DicomMap::HasOnlyComputedTags(resource.missingRequestedTags_)) |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2442 { |
4941 | 2443 OrthancConfiguration::ReaderLock lock; |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2444 if (lock.GetConfiguration().IsWarningEnabled(Warnings_001_TagsBeingReadFromStorage)) |
4941 | 2445 { |
2446 std::set<DicomTag> missingTags; | |
2447 Toolbox::AppendSets(missingTags, resource.missingRequestedTags_); | |
4981 | 2448 for (std::set<DicomTag>::const_iterator it = resource.missingRequestedTags_.begin(); it != resource.missingRequestedTags_.end(); ++it) |
4941 | 2449 { |
2450 if (DicomMap::IsComputedTag(*it)) | |
2451 { | |
2452 missingTags.erase(*it); | |
2453 } | |
2454 } | |
2455 | |
2456 std::string missings; | |
2457 FromDcmtkBridge::FormatListOfTags(missings, missingTags); | |
2458 | |
4944
f377d5643538
new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents:
4941
diff
changeset
|
2459 LOG(WARNING) << "W001: Accessing Dicom tags from storage when accessing " << Orthanc::GetResourceTypeText(resource.type_, false , false) << " : " << missings; |
4941 | 2460 } |
2461 | |
2462 | |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2463 std::string instanceId_ = instanceId; |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2464 DicomMap tagsFromJson; |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2465 |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2466 if (dicomAsJson == NULL) |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2467 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2468 if (instanceId_.empty()) |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2469 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2470 if (level == ResourceType_Instance) |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2471 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2472 instanceId_ = publicId; |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2473 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2474 else |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2475 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2476 std::list<std::string> instancesIds; |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2477 GetIndex().GetChildInstances(instancesIds, publicId); |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2478 if (instancesIds.size() < 1) |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2479 { |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2480 throw OrthancException(ErrorCode_InternalError, "ExpandResource: no instances found"); |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2481 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2482 instanceId_ = instancesIds.front(); |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2483 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2484 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2485 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2486 Json::Value tmpDicomAsJson; |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
2487 ReadDicomAsJson(tmpDicomAsJson, instanceId_, resource.missingRequestedTags_ /* ignoreTagLength */); // read all tags from DICOM and avoid cropping requested tags |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2488 tagsFromJson.FromDicomAsJson(tmpDicomAsJson, false /* append */, true /* parseSequences*/); |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2489 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2490 else |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2491 { |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
2492 tagsFromJson.FromDicomAsJson(*dicomAsJson, false /* append */, true /* parseSequences*/); |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2493 } |
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2494 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2495 resource.tags_.Merge(tagsFromJson); |
4937
3f9b9865c8cc
include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents:
4936
diff
changeset
|
2496 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2497 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2498 // compute the requested tags |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2499 ComputeTags(resource, *this, publicId, level, requestedTags); |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2500 } |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2501 else |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2502 { |
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2503 return false; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2504 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2505 |
4940
304514ce84ee
tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents:
4939
diff
changeset
|
2506 return true; |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2507 } |
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents:
4921
diff
changeset
|
2508 |
5111
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2509 int64_t ServerContext::GetServerUpTime() const |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2510 { |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2511 boost::posix_time::ptime nowUtc = boost::posix_time::second_clock::universal_time(); |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2512 boost::posix_time::time_duration elapsed = nowUtc - serverStartTimeUtc_; |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2513 |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2514 return elapsed.total_seconds(); |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2515 } |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
2516 |
224 | 2517 } |