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annotate OrthancServer/Sources/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 4772:ec8aef42a7db

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new configuration option "DicomAlwaysAllowMove" to disable verification of the remote modality in C-MOVE SCP
author Alain Mazy <am@osimis.io>
date Mon, 30 Aug 2021 09:47:47 +0200
parents 388d108f6e4b
children 61da49321754 94616af363ec
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "../PrecompiledHeadersServer.h"
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35 #include "OrthancRestApi.h"
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36
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37 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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38 #include "../../../OrthancFramework/Sources/Logging.h"
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39 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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40 #include "../OrthancConfiguration.h"
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41 #include "../ServerContext.h"
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42 #include "../ServerJobs/MergeStudyJob.h"
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43 #include "../ServerJobs/ResourceModificationJob.h"
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44 #include "../ServerJobs/SplitStudyJob.h"
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45
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46 #include <boost/lexical_cast.hpp>
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47 #include <boost/algorithm/string/predicate.hpp>
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48
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49 #define INFO_SUBSEQUENCES \
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50 "Starting with Orthanc 1.9.4, paths to subsequences can be provided using the "\
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51 "same syntax as the `dcmodify` command-line tool (wildcards are supported as well)."
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52
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54 static const char* const CONTENT = "Content";
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55 static const char* const FORCE = "Force";
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56 static const char* const INSTANCES = "Instances";
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57 static const char* const INTERPRET_BINARY_TAGS = "InterpretBinaryTags";
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58 static const char* const KEEP = "Keep";
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59 static const char* const KEEP_PRIVATE_TAGS = "KeepPrivateTags";
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60 static const char* const KEEP_SOURCE = "KeepSource";
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61 static const char* const LEVEL = "Level";
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62 static const char* const PARENT = "Parent";
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63 static const char* const PRIVATE_CREATOR = "PrivateCreator";
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64 static const char* const REMOVE = "Remove";
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65 static const char* const REPLACE = "Replace";
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66 static const char* const RESOURCES = "Resources";
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67 static const char* const SERIES = "Series";
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68 static const char* const TAGS = "Tags";
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69 static const char* const TRANSCODE = "Transcode";
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70
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71
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72 namespace Orthanc
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73 {
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74 // Modification of DICOM instances ------------------------------------------
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75
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76
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77 static std::string GeneratePatientName(ServerContext& context)
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78 {
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79 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true /* shared */);
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80 return "Anonymized" + boost::lexical_cast<std::string>(seq);
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81 }
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82
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83
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84 static void DocumentKeepSource(RestApiPostCall& call)
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85 {
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86 call.GetDocumentation()
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87 .SetRequestField(KEEP_SOURCE, RestApiCallDocumentation::Type_Boolean,
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88 "If set to `false`, instructs Orthanc to the remove original resources. "
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89 "By default, the original resources are kept in Orthanc.", false);
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90 }
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91
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92
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93 static void DocumentModifyOptions(RestApiPostCall& call)
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94 {
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95 // Check out "DicomModification::ParseModifyRequest()"
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96 call.GetDocumentation()
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97 .SetRequestField(TRANSCODE, RestApiCallDocumentation::Type_String,
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98 "Transcode the DICOM instances to the provided DICOM transfer syntax: "
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99 "https://book.orthanc-server.com/faq/transcoding.html", false)
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100 .SetRequestField(FORCE, RestApiCallDocumentation::Type_Boolean,
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101 "Allow the modification of tags related to DICOM identifiers, at the risk of "
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102 "breaking the DICOM model of the real world", false)
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103 .SetRequestField("RemovePrivateTags", RestApiCallDocumentation::Type_Boolean,
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104 "Remove the private tags from the DICOM instances (defaults to `false`)", false)
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105 .SetRequestField(REPLACE, RestApiCallDocumentation::Type_JsonObject,
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106 "Associative array to change the value of some DICOM tags in the DICOM instances. " INFO_SUBSEQUENCES, false)
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107 .SetRequestField(REMOVE, RestApiCallDocumentation::Type_JsonListOfStrings,
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108 "List of tags that must be removed from the DICOM instances. " INFO_SUBSEQUENCES, false)
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109 .SetRequestField(KEEP, RestApiCallDocumentation::Type_JsonListOfStrings,
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110 "Keep the original value of the specified tags, to be chosen among the `StudyInstanceUID`, "
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111 "`SeriesInstanceUID` and `SOPInstanceUID` tags. Avoid this feature as much as possible, "
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112 "as this breaks the DICOM model of the real world.", false)
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113 .SetRequestField(PRIVATE_CREATOR, RestApiCallDocumentation::Type_String,
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114 "The private creator to be used for private tags in `Replace`", false);
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115
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116 // This was existing, but undocumented in Orthanc <= 1.9.6
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117 DocumentKeepSource(call);
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118 }
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119
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120
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121 static void DocumentAnonymizationOptions(RestApiPostCall& call)
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122 {
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123 // Check out "DicomModification::ParseAnonymizationRequest()"
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124 call.GetDocumentation()
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125 .SetRequestField(FORCE, RestApiCallDocumentation::Type_Boolean,
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126 "Allow the modification of tags related to DICOM identifiers, at the risk of "
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127 "breaking the DICOM model of the real world", false)
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128 .SetRequestField("DicomVersion", RestApiCallDocumentation::Type_String,
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129 "Version of the DICOM standard to be used for anonymization. Check out "
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130 "configuration option `DeidentifyLogsDicomVersion` for possible values.", false)
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131 .SetRequestField(KEEP_PRIVATE_TAGS, RestApiCallDocumentation::Type_Boolean,
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132 "Keep the private tags from the DICOM instances (defaults to `false`)", false)
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133 .SetRequestField(REPLACE, RestApiCallDocumentation::Type_JsonObject,
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134 "Associative array to change the value of some DICOM tags in the DICOM instances. " INFO_SUBSEQUENCES, false)
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135 .SetRequestField(REMOVE, RestApiCallDocumentation::Type_JsonListOfStrings,
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136 "List of additional tags to be removed from the DICOM instances. " INFO_SUBSEQUENCES, false)
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137 .SetRequestField(KEEP, RestApiCallDocumentation::Type_JsonListOfStrings,
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138 "List of DICOM tags whose value must not be destroyed by the anonymization. " INFO_SUBSEQUENCES, false)
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139 .SetRequestField(PRIVATE_CREATOR, RestApiCallDocumentation::Type_String,
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140 "The private creator to be used for private tags in `Replace`", false);
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141
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142 // This was existing, but undocumented in Orthanc <= 1.9.6
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143 DocumentKeepSource(call);
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144 }
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145
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146
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147 static void ParseModifyRequest(Json::Value& request,
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148 DicomModification& target,
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149 const RestApiPostCall& call)
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150 {
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151 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"},"Priority":9}'
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152
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153 {
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154 OrthancConfiguration::ReaderLock lock;
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155 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator());
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156 }
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157
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158 if (call.ParseJsonRequest(request))
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159 {
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160 target.ParseModifyRequest(request);
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161 }
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162 else
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163 {
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164 throw OrthancException(ErrorCode_BadFileFormat);
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165 }
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166 }
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167
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168
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169 static void ParseAnonymizationRequest(Json::Value& request,
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170 DicomModification& target,
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171 RestApiPostCall& call)
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172 {
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173 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm
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174
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175 {
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176 OrthancConfiguration::ReaderLock lock;
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177 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator());
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178 }
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179
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180 if (call.ParseJsonRequest(request) &&
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181 request.isObject())
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182 {
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183 bool patientNameOverridden;
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184 target.ParseAnonymizationRequest(patientNameOverridden, request);
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185
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186 if (!patientNameOverridden)
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187 {
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188 // Override the random Patient's Name by one that is more
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189 // user-friendly (provided none was specified by the user)
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190 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true);
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191 }
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192 }
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193 else
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194 {
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195 throw OrthancException(ErrorCode_BadFileFormat);
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196 }
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197 }
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198
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199
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200 static void AnonymizeOrModifyInstance(DicomModification& modification,
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201 RestApiPostCall& call,
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202 bool transcode,
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203 DicomTransferSyntax targetSyntax)
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204 {
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205 ServerContext& context = OrthancRestApi::GetContext(call);
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206 std::string id = call.GetUriComponent("id", "");
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207
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208 std::unique_ptr<ParsedDicomFile> modified;
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209
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210 {
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211 ServerContext::DicomCacheLocker locker(context, id);
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212 modified.reset(locker.GetDicom().Clone(true));
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213 }
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214
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215 modification.Apply(*modified);
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216
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217 if (transcode)
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218 {
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219 IDicomTranscoder::DicomImage source;
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220 source.AcquireParsed(*modified); // "modified" is invalid below this point
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221
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222 IDicomTranscoder::DicomImage transcoded;
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223
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224 std::set<DicomTransferSyntax> s;
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225 s.insert(targetSyntax);
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226
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227 if (context.Transcode(transcoded, source, s, true))
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228 {
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229 call.GetOutput().AnswerBuffer(transcoded.GetBufferData(),
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230 transcoded.GetBufferSize(), MimeType_Dicom);
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231 }
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232 else
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233 {
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234 throw OrthancException(ErrorCode_InternalError,
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235 "Cannot transcode to transfer syntax: " +
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236 std::string(GetTransferSyntaxUid(targetSyntax)));
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237 }
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238 }
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239 else
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240 {
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241 modified->Answer(call.GetOutput());
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242 }
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243 }
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244
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245
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246 static ResourceType DetectModifyLevel(const DicomModification& modification)
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247 {
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248 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID))
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249 {
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250 return ResourceType_Patient;
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251 }
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252 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
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253 {
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254 return ResourceType_Study;
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255 }
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256 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
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257 {
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258 return ResourceType_Series;
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259 }
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260 else
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261 {
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262 return ResourceType_Instance;
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263 }
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264 }
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265
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266
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267 static void ModifyInstance(RestApiPostCall& call)
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268 {
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269 if (call.IsDocumentation())
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270 {
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271 DocumentModifyOptions(call);
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272 call.GetDocumentation()
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273 .SetTag("Instances")
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274 .SetSummary("Modify instance")
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275 .SetDescription("Download a modified version of the DICOM instance whose Orthanc identifier is provided in the URL: "
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276 "https://book.orthanc-server.com/users/anonymization.html#modification-of-a-single-instance")
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277 .SetUriArgument("id", "Orthanc identifier of the instance of interest")
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278 .AddAnswerType(MimeType_Dicom, "The modified DICOM instance");
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279 return;
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280 }
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281
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282 DicomModification modification;
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283 modification.SetAllowManualIdentifiers(true);
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284
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285 Json::Value request;
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286 ParseModifyRequest(request, modification, call);
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287
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288 modification.SetLevel(DetectModifyLevel(modification));
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289
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290 if (request.isMember(TRANSCODE))
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291 {
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292 std::string s = SerializationToolbox::ReadString(request, TRANSCODE);
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293
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294 DicomTransferSyntax syntax;
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295 if (LookupTransferSyntax(syntax, s))
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296 {
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297 AnonymizeOrModifyInstance(modification, call, true, syntax);
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298 }
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299 else
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300 {
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301 throw OrthancException(ErrorCode_ParameterOutOfRange, "Unknown transfer syntax: " + s);
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302 }
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303 }
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304 else
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305 {
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306 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */,
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307 DicomTransferSyntax_LittleEndianImplicit /* unused */);
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308 }
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309 }
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310
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311
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312 static void AnonymizeInstance(RestApiPostCall& call)
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313 {
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314 if (call.IsDocumentation())
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315 {
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316 DocumentAnonymizationOptions(call);
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317 call.GetDocumentation()
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318 .SetTag("Instances")
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319 .SetSummary("Anonymize instance")
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320 .SetDescription("Download an anonymized version of the DICOM instance whose Orthanc identifier is provided in the URL: "
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321 "https://book.orthanc-server.com/users/anonymization.html#anonymization-of-a-single-instance")
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322 .SetUriArgument("id", "Orthanc identifier of the instance of interest")
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323 .AddAnswerType(MimeType_Dicom, "The anonymized DICOM instance");
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324 return;
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325 }
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326
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327 DicomModification modification;
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328 modification.SetAllowManualIdentifiers(true);
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329
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330 Json::Value request;
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331 ParseAnonymizationRequest(request, modification, call);
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332
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333 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */,
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334 DicomTransferSyntax_LittleEndianImplicit /* unused */);
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335 }
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336
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337
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338 static void SetKeepSource(CleaningInstancesJob& job,
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339 const Json::Value& body)
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340 {
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341 if (body.isMember(KEEP_SOURCE))
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342 {
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343 job.SetKeepSource(SerializationToolbox::ReadBoolean(body, KEEP_SOURCE));
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344 }
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345 }
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346
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347
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348 static void SubmitModificationJob(std::unique_ptr<DicomModification>& modification,
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349 bool isAnonymization,
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350 RestApiPostCall& call,
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351 const Json::Value& body,
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352 ResourceType outputLevel /* unused for multiple resources */,
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353 bool isSingleResource,
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354 const std::set<std::string>& resources)
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355 {
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356 ServerContext& context = OrthancRestApi::GetContext(call);
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357
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358 std::unique_ptr<ResourceModificationJob> job(new ResourceModificationJob(context));
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359
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360 if (isSingleResource) // This notably configures the output format
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361 {
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362 job->SetSingleResourceModification(modification.release(), outputLevel, isAnonymization);
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363 }
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364 else
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365 {
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366 job->SetMultipleResourcesModification(modification.release(), isAnonymization);
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367 }
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368
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369 job->SetOrigin(call);
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370 SetKeepSource(*job, body);
3943
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371
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372 if (body.isMember(TRANSCODE))
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373 {
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374 job->SetTranscode(SerializationToolbox::ReadString(body, TRANSCODE));
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375 }
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376
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377 for (std::set<std::string>::const_iterator
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378 it = resources.begin(); it != resources.end(); ++it)
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379 {
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380 context.AddChildInstances(*job, *it);
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381 }
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382
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383 job->AddTrailingStep();
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384
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385 OrthancRestApi::GetApi(call).SubmitCommandsJob
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386 (call, job.release(), true /* synchronous by default */, body);
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387 }
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388
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389
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390 static void SubmitModificationJob(std::unique_ptr<DicomModification>& modification,
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391 bool isAnonymization,
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Sebastien Jodogne <s.jodogne@gmail.com>
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392 RestApiPostCall& call,
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393 const Json::Value& body,
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394 ResourceType outputLevel)
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395 {
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396 // This was the only flavor in Orthanc <= 1.9.3
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397 std::set<std::string> resources;
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Sebastien Jodogne <s.jodogne@gmail.com>
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398 resources.insert(call.GetUriComponent("id", ""));
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399
45bce660ce3a added routes for bulk anonymization/modification
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400 SubmitModificationJob(modification, isAnonymization, call, body, outputLevel,
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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401 true /* single resource */, resources);
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402 }
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
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403
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
404
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
405 static void SubmitBulkJob(std::unique_ptr<DicomModification>& modification,
45bce660ce3a added routes for bulk anonymization/modification
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406 bool isAnonymization,
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diff changeset
407 RestApiPostCall& call,
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Sebastien Jodogne <s.jodogne@gmail.com>
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408 const Json::Value& body)
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Sebastien Jodogne <s.jodogne@gmail.com>
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409 {
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
410 std::set<std::string> resources;
4712
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411 SerializationToolbox::ReadSetOfStrings(resources, body, RESOURCES);
4693
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diff changeset
412
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
413 SubmitModificationJob(modification, isAnonymization,
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414 call, body, ResourceType_Instance /* arbitrary value, unused */,
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415 false /* multiple resources */, resources);
45bce660ce3a added routes for bulk anonymization/modification
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416 }
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
417
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diff changeset
418
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419 template <enum ResourceType resourceType>
974
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420 static void ModifyResource(RestApiPostCall& call)
751
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421 {
4424
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422 if (call.IsDocumentation())
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423 {
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424 OrthancRestApi::DocumentSubmitCommandsJob(call);
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425 DocumentModifyOptions(call);
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426 const std::string r = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */);
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427 call.GetDocumentation()
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428 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */))
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429 .SetSummary("Modify " + r)
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430 .SetDescription("Start a job that will modify all the DICOM instances within the " + r +
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diff changeset
431 " whose identifier is provided in the URL. The modified DICOM instances will be "
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diff changeset
432 "stored into a brand new " + r + ", whose Orthanc identifiers will be returned by the job. "
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diff changeset
433 "https://book.orthanc-server.com/users/anonymization.html#modification-of-studies-or-series")
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diff changeset
434 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest");
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diff changeset
435 return;
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436 }
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parents: 4422
diff changeset
437
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parents: 3709
diff changeset
438 std::unique_ptr<DicomModification> modification(new DicomModification);
2640
c691fcf66071 ResourceModificationJob
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diff changeset
439
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diff changeset
440 Json::Value body;
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diff changeset
441 ParseModifyRequest(body, *modification, call);
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diff changeset
442
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diff changeset
443 modification->SetLevel(resourceType);
4693
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diff changeset
444
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diff changeset
445 SubmitModificationJob(modification, false /* not an anonymization */,
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diff changeset
446 call, body, resourceType);
751
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diff changeset
447 }
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parents:
diff changeset
448
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diff changeset
449
4693
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diff changeset
450 // New in Orthanc 1.9.4
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diff changeset
451 static void BulkModify(RestApiPostCall& call)
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diff changeset
452 {
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
453 if (call.IsDocumentation())
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
454 {
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
455 OrthancRestApi::DocumentSubmitCommandsJob(call);
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diff changeset
456 DocumentModifyOptions(call);
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
457 call.GetDocumentation()
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diff changeset
458 .SetTag("System")
4694
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diff changeset
459 .SetSummary("Modify a set of resources")
4712
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diff changeset
460 .SetRequestField(RESOURCES, RestApiCallDocumentation::Type_JsonListOfStrings,
4699
facea16b055b added the "Level" argument to "/tools/bulk-content"
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parents: 4694
diff changeset
461 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true)
4766
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diff changeset
462 .SetRequestField(LEVEL, RestApiCallDocumentation::Type_String,
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
463 "Level of the modification (`Patient`, `Study`, `Series` or `Instance`). If absent, "
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
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diff changeset
464 "the level defaults to `Instance`, but is set to `Patient` if `PatientID` is modified, "
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
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diff changeset
465 "to `Study` if `StudyInstanceUID` is modified, or to `Series` if `SeriesInstancesUID` "
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parents: 4715
diff changeset
466 "is modified. (new in Orthanc 1.9.7)", false)
4693
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diff changeset
467 .SetDescription("Start a job that will modify all the DICOM patients, studies, series or instances "
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
468 "whose identifiers are provided in the `Resources` field.")
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
469 .AddAnswerType(MimeType_Json, "The list of all the resources that have been altered by this modification");
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
470 return;
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
471 }
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
472
45bce660ce3a added routes for bulk anonymization/modification
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diff changeset
473 std::unique_ptr<DicomModification> modification(new DicomModification);
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diff changeset
474
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
475 Json::Value body;
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
476 ParseModifyRequest(body, *modification, call);
45bce660ce3a added routes for bulk anonymization/modification
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parents: 4687
diff changeset
477
4766
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
478 if (body.isMember(LEVEL))
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
479 {
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
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parents: 4715
diff changeset
480 // This case was introduced in Orthanc 1.9.7
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
481 modification->SetLevel(StringToResourceType(body[LEVEL].asCString()));
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diff changeset
482 }
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
483 else
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
484 {
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
485 modification->SetLevel(DetectModifyLevel(*modification));
388d108f6e4b Added "Level" option to POST /tools/bulk-modify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4715
diff changeset
486 }
4693
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
487
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
488 SubmitBulkJob(modification, false /* not an anonymization */, call, body);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
489 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
490
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
491
2639
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
492 template <enum ResourceType resourceType>
974
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parents: 831
diff changeset
493 static void AnonymizeResource(RestApiPostCall& call)
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 {
4424
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
495 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
496 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
497 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
498 DocumentAnonymizationOptions(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
499 const std::string r = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */);
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
500 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
501 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */))
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
502 .SetSummary("Anonymize " + r)
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
503 .SetDescription("Start a job that will anonymize all the DICOM instances within the " + r +
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
504 " whose identifier is provided in the URL. The modified DICOM instances will be "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
505 "stored into a brand new " + r + ", whose Orthanc identifiers will be returned by the job. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
506 "https://book.orthanc-server.com/users/anonymization.html#anonymization-of-patients-studies-or-series")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
507 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest");
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
508 return;
83371ccdfe80 openapi documentation is now completed
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parents: 4422
diff changeset
509 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
510
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
511 std::unique_ptr<DicomModification> modification(new DicomModification);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
513 Json::Value body;
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
514 ParseAnonymizationRequest(body, *modification, call);
2640
c691fcf66071 ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2639
diff changeset
515
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
516 SubmitModificationJob(modification, true /* anonymization */,
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
517 call, body, resourceType);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
521 // New in Orthanc 1.9.4
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
522 static void BulkAnonymize(RestApiPostCall& call)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
523 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
524 if (call.IsDocumentation())
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
525 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
526 OrthancRestApi::DocumentSubmitCommandsJob(call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
527 DocumentAnonymizationOptions(call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
528 call.GetDocumentation()
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
529 .SetTag("System")
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
530 .SetSummary("Anonymize a set of resources")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
531 .SetRequestField(RESOURCES, RestApiCallDocumentation::Type_JsonListOfStrings,
4699
facea16b055b added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
532 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true)
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
533 .SetDescription("Start a job that will anonymize all the DICOM patients, studies, series or instances "
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
534 "whose identifiers are provided in the `Resources` field.")
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
535 .AddAnswerType(MimeType_Json, "The list of all the resources that have been created by this anonymization");
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
536 return;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
537 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
538
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
539 std::unique_ptr<DicomModification> modification(new DicomModification);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
540
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
541 Json::Value body;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
542 ParseAnonymizationRequest(body, *modification, call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
543
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
544 SubmitBulkJob(modification, true /* anonymization */, call, body);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
545 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
546
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
547
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
548 static void StoreCreatedInstance(std::string& id /* out */,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
549 RestApiPostCall& call,
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
550 ParsedDicomFile& dicom,
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
551 bool sendAnswer)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
552 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4479
diff changeset
553 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4479
diff changeset
554 toStore->SetOrigin(DicomInstanceOrigin::FromRest(call));
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
555
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
556 ServerContext& context = OrthancRestApi::GetContext(call);
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4479
diff changeset
557 StoreStatus status = context.Store(id, *toStore, StoreInstanceMode_Default);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
558
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
559 if (status == StoreStatus_Failure)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
560 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
561 throw OrthancException(ErrorCode_CannotStoreInstance);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
562 }
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
563
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
564 if (sendAnswer)
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
565 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4479
diff changeset
566 OrthancRestApi::GetApi(call).AnswerStoredInstance(call, *toStore, status, id);
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
567 }
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
568 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
569
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
570
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
571 static void CreateDicomV1(ParsedDicomFile& dicom,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
572 RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
573 const Json::Value& request)
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
574 {
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
575 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}'
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 796
diff changeset
576 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}'
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
577
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
578 assert(request.isObject());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
579 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
580
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
581 Json::Value::Members members = request.getMemberNames();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
582 for (size_t i = 0; i < members.size(); i++)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
583 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
584 const std::string& name = members[i];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
585 if (request[name].type() != Json::stringValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
586 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
587 throw OrthancException(ErrorCode_CreateDicomNotString);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
588 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
589
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
590 std::string value = request[name].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
591
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
592 DicomTag tag = FromDcmtkBridge::ParseTag(name);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
593 if (tag == DICOM_TAG_PIXEL_DATA)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
594 {
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
595 dicom.EmbedContent(value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
596 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
597 else
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
598 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
599 // This is V1, don't try and decode data URI scheme
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
600 dicom.ReplacePlainString(tag, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
601 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
602 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
603 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
604
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
605
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
606 static void InjectTags(ParsedDicomFile& dicom,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
607 const Json::Value& tags,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
608 bool decodeBinaryTags,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
609 const std::string& privateCreator,
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
610 bool force)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
611 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
612 if (tags.type() != Json::objectValue)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
613 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
614 throw OrthancException(ErrorCode_BadRequest, "Tags field is not an array");
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
615 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
616
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
617 // Inject the user-specified tags
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
618 Json::Value::Members members = tags.getMemberNames();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
619 for (size_t i = 0; i < members.size(); i++)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
620 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
621 const std::string& name = members[i];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
622 DicomTag tag = FromDcmtkBridge::ParseTag(name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
623
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
624 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
625 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
626 if (!force &&
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
627 tag != DICOM_TAG_PATIENT_ID &&
1640
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
628 tag != DICOM_TAG_ACQUISITION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
629 tag != DICOM_TAG_ACQUISITION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
630 tag != DICOM_TAG_CONTENT_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
631 tag != DICOM_TAG_CONTENT_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
632 tag != DICOM_TAG_INSTANCE_CREATION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
633 tag != DICOM_TAG_INSTANCE_CREATION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
634 tag != DICOM_TAG_SERIES_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
635 tag != DICOM_TAG_SERIES_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
636 tag != DICOM_TAG_STUDY_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
637 tag != DICOM_TAG_STUDY_TIME &&
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
638 dicom.HasTag(tag))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
639 {
2952
4ceb9bf7b00c added details string in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2936
diff changeset
640 throw OrthancException(ErrorCode_CreateDicomOverrideTag, name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
641 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
642
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
643 if (tag == DICOM_TAG_PIXEL_DATA)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
644 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
645 throw OrthancException(ErrorCode_CreateDicomUseContent);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
646 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
647 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
648 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
649 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent, privateCreator);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
650 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
651 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
652 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
653 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
654
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
655
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
656 static void CreateSeries(RestApiPostCall& call,
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
657 ParsedDicomFile& base /* in */,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
658 const Json::Value& content,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
659 bool decodeBinaryTags,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
660 const std::string& privateCreator,
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
661 bool force)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
662 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
663 assert(content.isArray());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
664 assert(content.size() > 0);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
665 ServerContext& context = OrthancRestApi::GetContext(call);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
666
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
667 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
668 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1");
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
669
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
670 std::string someInstance;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
671
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
672 try
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
673 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
674 for (Json::ArrayIndex i = 0; i < content.size(); i++)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
675 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
676 std::unique_ptr<ParsedDicomFile> dicom(base.Clone(false));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
677 const Json::Value* payload = NULL;
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
678
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
679 if (content[i].type() == Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
680 {
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
681 payload = &content[i];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
682 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
683 else if (content[i].type() == Json::objectValue)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
684 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
685 if (!content[i].isMember(CONTENT))
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
686 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
687 throw OrthancException(ErrorCode_CreateDicomNoPayload);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
688 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
689
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
690 payload = &content[i][CONTENT];
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
691
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
692 if (content[i].isMember(TAGS))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
693 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
694 InjectTags(*dicom, content[i][TAGS], decodeBinaryTags, privateCreator, force);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
695 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
696 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
697
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
698 if (payload == NULL ||
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
699 payload->type() != Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
700 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
701 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
702 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
703
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
704 dicom->EmbedContent(payload->asString());
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
705 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
706 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
707
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
708 StoreCreatedInstance(someInstance, call, *dicom, false);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
709 }
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
710 }
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
711 catch (OrthancException&)
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
712 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
713 // Error: Remove the newly-created series
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
714
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
715 std::string series;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
716 if (context.GetIndex().LookupParent(series, someInstance))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
717 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
718 Json::Value dummy;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
719 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
720 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
721
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
722 throw;
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
723 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
724
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
725 std::string series;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
726 if (context.GetIndex().LookupParent(series, someInstance))
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
727 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
728 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
729 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
730 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
731
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
732
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
733 static void CreateDicomV2(RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
734 const Json::Value& request)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
735 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
736 static const char* const SPECIFIC_CHARACTER_SET_2 = "SpecificCharacterSet";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
737 static const char* const TYPE = "Type";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
738 static const char* const VALUE = "Value";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
739
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
740 assert(request.isObject());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
741 ServerContext& context = OrthancRestApi::GetContext(call);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
742
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
743 if (!request.isMember(TAGS) ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
744 request[TAGS].type() != Json::objectValue)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
745 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
746 throw OrthancException(ErrorCode_BadRequest);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
747 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
748
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
749 ParsedDicomFile dicom(true);
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
750
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
751 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
752 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
753
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
754 if (request[TAGS].isMember(SPECIFIC_CHARACTER_SET_2))
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
755 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
756 const char* tmp = request[TAGS][SPECIFIC_CHARACTER_SET_2].asCString();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
757 if (!GetDicomEncoding(encoding, tmp))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
758 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
759 throw OrthancException(ErrorCode_ParameterOutOfRange,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
760 "Unknown specific character set: " + std::string(tmp));
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
761 }
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
762 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
763 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
764 {
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2361
diff changeset
765 encoding = GetDefaultDicomEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
766 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
767
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
768 dicom.SetEncoding(encoding);
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
769 }
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
770
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
771 ResourceType parentType = ResourceType_Instance;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
772
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
773 if (request.isMember(PARENT))
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
774 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
775 // Locate the parent tags
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
776 std::string parent = request[PARENT].asString();
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
777 if (!context.GetIndex().LookupResourceType(parentType, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
778 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
779 throw OrthancException(ErrorCode_CreateDicomBadParent);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
780 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
781
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
782 if (parentType == ResourceType_Instance)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
783 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
784 throw OrthancException(ErrorCode_CreateDicomParentIsInstance);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
785 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
786
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
787 // Select one existing child instance of the parent resource, to
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
788 // retrieve all its tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
789 Json::Value siblingTags;
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
790 std::string siblingInstanceId;
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
791
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
792 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
793 // Retrieve all the instances of the parent resource
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
794 std::list<std::string> siblingInstances;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
795 context.GetIndex().GetChildInstances(siblingInstances, parent);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
796
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
797 if (siblingInstances.empty())
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
798 {
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
799 // Error: No instance (should never happen)
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
800 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
801 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
802
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
803 siblingInstanceId = siblingInstances.front();
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
804 context.ReadDicomAsJson(siblingTags, siblingInstanceId);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
805 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
806
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
807
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
808 // Choose the same encoding as the parent resource
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
809 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
810 static const char* const SPECIFIC_CHARACTER_SET = "0008,0005";
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
811
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
812 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
813 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
814 Encoding encoding;
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
815
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
816 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember(VALUE) ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
817 siblingTags[SPECIFIC_CHARACTER_SET][VALUE].type() != Json::stringValue ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
818 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET][VALUE].asCString()))
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
819 {
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
820 LOG(WARNING) << "Instance with an incorrect Specific Character Set, "
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
821 << "using the default Orthanc encoding: " << siblingInstanceId;
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
822 encoding = GetDefaultDicomEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
823 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
824
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
825 dicom.SetEncoding(encoding);
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
826 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
827 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
828
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
829
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
830 // Retrieve the tags for all the parent modules
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
831 typedef std::set<DicomTag> ModuleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
832 ModuleTags moduleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
833
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
834 ResourceType type = parentType;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
835 for (;;)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
836 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
837 DicomTag::AddTagsForModule(moduleTags, GetModule(type));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
838
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
839 if (type == ResourceType_Patient)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
840 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
841 break; // We're done
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
842 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
843
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
844 // Go up
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
845 std::string tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
846 if (!context.GetIndex().LookupParent(tmp, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
847 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
848 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
849 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
850
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
851 parent = tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
852 type = GetParentResourceType(type);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
853 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
854
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
855 for (ModuleTags::const_iterator it = moduleTags.begin();
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
856 it != moduleTags.end(); ++it)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
857 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
858 std::string t = it->Format();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
859 if (siblingTags.isMember(t))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
860 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
861 const Json::Value& tag = siblingTags[t];
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
862 if (tag[TYPE] == "Null")
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
863 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
864 dicom.ReplacePlainString(*it, "");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
865 }
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
866 else if (tag[TYPE] == "String")
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
867 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
868 std::string value = tag[VALUE].asString(); // This is an UTF-8 value (as it comes from JSON)
3441
6cc72ebfd6ef Fix issue #141 (/tools/create-dicom removes non-ASCII characters from study description)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
869 dicom.ReplacePlainString(*it, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
870 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
871 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
872 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
873 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
874
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
875
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
876 bool decodeBinaryTags = true;
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
877 if (request.isMember(INTERPRET_BINARY_TAGS))
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
878 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
879 const Json::Value& v = request[INTERPRET_BINARY_TAGS];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
880 if (v.type() != Json::booleanValue)
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
881 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
882 throw OrthancException(ErrorCode_BadRequest);
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
883 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
884
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
885 decodeBinaryTags = v.asBool();
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
886 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
887
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
888
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
889 // New argument in Orthanc 1.6.0
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
890 std::string privateCreator;
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
891 if (request.isMember(PRIVATE_CREATOR))
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
892 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
893 const Json::Value& v = request[PRIVATE_CREATOR];
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
894 if (v.type() != Json::stringValue)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
895 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
896 throw OrthancException(ErrorCode_BadRequest);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
897 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
898
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
899 privateCreator = v.asString();
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
900 }
3709
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
901 else
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
902 {
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
903 OrthancConfiguration::ReaderLock lock;
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
904 privateCreator = lock.GetConfiguration().GetDefaultPrivateCreator();
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
905 }
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
906
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
907
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
908 // New in Orthanc 1.9.0
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
909 bool force = false;
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
910 if (request.isMember(FORCE))
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
911 {
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
912 const Json::Value& v = request[FORCE];
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
913 if (v.type() != Json::booleanValue)
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
914 {
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
915 throw OrthancException(ErrorCode_BadRequest);
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
916 }
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
917
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
918 force = v.asBool();
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
919 }
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
920
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
921
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
922 // Inject time-related information
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
923 std::string date, time;
2475
8cc3ca64a534 Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
924 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
925 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
926 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
927 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
928 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
929 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
930 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
931
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
932 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
933 parentType == ResourceType_Study ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
934 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
935 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
936 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
937 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
938 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
939
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
940 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
941 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
942 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
943 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
944 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
945 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
946
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
947
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
948 InjectTags(dicom, request[TAGS], decodeBinaryTags, privateCreator, force);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
949
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
950
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
951 // Inject the content (either an image, or a PDF file)
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
952 if (request.isMember(CONTENT))
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
953 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
954 const Json::Value& content = request[CONTENT];
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
955
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
956 if (content.type() == Json::stringValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
957 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
958 dicom.EmbedContent(request[CONTENT].asString());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
959
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
960 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
961 else if (content.type() == Json::arrayValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
962 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
963 if (content.size() > 0)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
964 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
965 // Let's create a series instead of a single instance
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
966 CreateSeries(call, dicom, content, decodeBinaryTags, privateCreator, force);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
967 return;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
968 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
969 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
970 else
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
971 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
972 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
973 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
974 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
975
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
976 std::string id;
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
977 StoreCreatedInstance(id, call, dicom, true);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
978 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
979
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
980
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
981 static void CreateDicom(RestApiPostCall& call)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
982 {
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
983 if (call.IsDocumentation())
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
984 {
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
985 call.GetDocumentation()
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
986 .SetTag("System")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
987 .SetSummary("Create one DICOM instance")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
988 .SetDescription("Create one DICOM instance, and store it into Orthanc")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
989 .SetRequestField(TAGS, RestApiCallDocumentation::Type_JsonObject,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
990 "Associative array containing the tags of the new instance to be created", true)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
991 .SetRequestField(CONTENT, RestApiCallDocumentation::Type_String,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
992 "This field can be used to embed an image (pixel data) or a PDF inside the created DICOM instance. "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
993 "The PNG image, the JPEG image or the PDF file must be provided using their "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
994 "[data URI scheme encoding](https://en.wikipedia.org/wiki/Data_URI_scheme). "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
995 "This field can possibly contain a JSON array, in which case a DICOM series is created "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
996 "containing one DICOM instance for each item in the `Content` field.", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
997 .SetRequestField(PARENT, RestApiCallDocumentation::Type_String,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
998 "If present, the newly created instance will be attached to the parent DICOM resource "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
999 "whose Orthanc identifier is contained in this field. The DICOM tags of the parent "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1000 "modules in the DICOM hierarchy will be automatically copied to the newly created instance.", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1001 .SetRequestField(INTERPRET_BINARY_TAGS, RestApiCallDocumentation::Type_Boolean,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1002 "If some value in the `Tags` associative array is formatted according to some "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1003 "[data URI scheme encoding](https://en.wikipedia.org/wiki/Data_URI_scheme), "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1004 "whether this value is decoded to a binary value or kept as such (`true` by default)", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1005 .SetRequestField(PRIVATE_CREATOR, RestApiCallDocumentation::Type_String,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1006 "The private creator to be used for private tags in `Tags`", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1007 .SetRequestField(FORCE, RestApiCallDocumentation::Type_Boolean,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1008 "Avoid the consistency checks for the DICOM tags that enforce the DICOM model of the real-world. "
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1009 "You can notably use this flag if you need to manually set the tags `StudyInstanceUID`, "
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1010 "`SeriesInstanceUID`, or `SOPInstanceUID`. Be careful with this feature.", false)
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1011 .SetAnswerField("ID", RestApiCallDocumentation::Type_String, "Orthanc identifier of the newly created instance")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1012 .SetAnswerField("Path", RestApiCallDocumentation::Type_String, "Path to access the instance in the REST API");
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1013 return;
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1014 }
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1015
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1016 Json::Value request;
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1017 if (!call.ParseJsonRequest(request) ||
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1018 !request.isObject())
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1019 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1020 throw OrthancException(ErrorCode_BadRequest);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1021 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1022
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1023 if (request.isMember(TAGS))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1024 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1025 CreateDicomV2(call, request);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1026 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1027 else
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1028 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1029 // Compatibility with Orthanc <= 0.9.3
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
1030 ParsedDicomFile dicom(true);
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
1031 CreateDicomV1(dicom, call, request);
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1032
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1033 std::string id;
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
1034 StoreCreatedInstance(id, call, dicom, true);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1035 }
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1036 }
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1037
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1038
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1039 static void SplitStudy(RestApiPostCall& call)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1040 {
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1041 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1042 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1043 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1044 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1045 .SetTag("Studies")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1046 .SetSummary("Split study")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1047 .SetDescription("Start a new job so as to split the DICOM study whose Orthanc identifier is provided in the URL, "
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1048 "by taking some of its children series or instances out of it and putting them into a brand new study "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1049 "(this new study is created by setting the `StudyInstanceUID` tag to a random identifier): "
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1050 "https://book.orthanc-server.com/users/anonymization.html#splitting")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1051 .SetUriArgument("id", "Orthanc identifier of the study of interest")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1052 .SetRequestField(SERIES, RestApiCallDocumentation::Type_JsonListOfStrings,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1053 "The list of series to be separated from the parent study. "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1054 "These series must all be children of the same source study, that is specified in the URI.", false)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1055 .SetRequestField(REPLACE, RestApiCallDocumentation::Type_JsonObject,
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1056 "Associative array to change the value of some DICOM tags in the new study. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1057 "These tags must be part of the \"Patient Module Attributes\" or the \"General Study "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1058 "Module Attributes\", as specified by the DICOM 2011 standard in Tables C.7-1 and C.7-3.", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1059 .SetRequestField(REMOVE, RestApiCallDocumentation::Type_JsonListOfStrings,
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1060 "List of tags that must be removed in the new study (from the same modules as in the `Replace` option)", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1061 .SetRequestField(KEEP_SOURCE, RestApiCallDocumentation::Type_Boolean,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1062 "If set to `true`, instructs Orthanc to keep a copy of the original series/instances in the source study. "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1063 "By default, the original series/instances are deleted from Orthanc.", false)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1064 .SetRequestField(INSTANCES, RestApiCallDocumentation::Type_JsonListOfStrings,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1065 "The list of instances to be separated from the parent study. "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1066 "These instances must all be children of the same source study, that is specified in the URI.", false);
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1067 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1068 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1069
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1070 ServerContext& context = OrthancRestApi::GetContext(call);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1071
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1072 Json::Value request;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1073 if (!call.ParseJsonRequest(request))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1074 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1075 // Bad JSON request
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1076 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1077 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1078
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1079 const std::string study = call.GetUriComponent("id", "");
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1080
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
1081 std::unique_ptr<SplitStudyJob> job(new SplitStudyJob(context, study));
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1082 job->SetOrigin(call);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1083
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1084 bool ok = false;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1085 if (request.isMember(SERIES))
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1086 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1087 std::vector<std::string> series;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1088 SerializationToolbox::ReadArrayOfStrings(series, request, SERIES);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1089
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1090 for (size_t i = 0; i < series.size(); i++)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1091 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1092 job->AddSourceSeries(series[i]);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1093 ok = true;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1094 }
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1095 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1096
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1097 if (request.isMember(INSTANCES))
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1098 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1099 std::vector<std::string> instances;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1100 SerializationToolbox::ReadArrayOfStrings(instances, request, INSTANCES);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1101
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1102 for (size_t i = 0; i < instances.size(); i++)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1103 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1104 job->AddSourceInstance(instances[i]);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1105 ok = true;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1106 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1107 }
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1108
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1109 if (!ok)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1110 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1111 throw OrthancException(ErrorCode_BadRequest, "Both the \"Series\" and the \"Instances\" fields are missing");
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1112 }
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1113
2860
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1114 job->AddTrailingStep();
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1115
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1116 SetKeepSource(*job, request);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1117
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1118 if (request.isMember(REMOVE))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1119 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1120 if (request[REMOVE].type() != Json::arrayValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1121 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1122 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1123 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1124
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1125 for (Json::Value::ArrayIndex i = 0; i < request[REMOVE].size(); i++)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1126 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1127 if (request[REMOVE][i].type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1128 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1129 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1130 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1131 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1132 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1133 job->Remove(FromDcmtkBridge::ParseTag(request[REMOVE][i].asCString()));
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1134 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1135 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1136 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1137
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1138 if (request.isMember(REPLACE))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1139 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1140 if (request[REPLACE].type() != Json::objectValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1141 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1142 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1143 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1144
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1145 Json::Value::Members tags = request[REPLACE].getMemberNames();
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1146
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1147 for (size_t i = 0; i < tags.size(); i++)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1148 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1149 const Json::Value& value = request[REPLACE][tags[i]];
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1150
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1151 if (value.type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1152 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1153 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1154 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1155 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1156 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1157 job->Replace(FromDcmtkBridge::ParseTag(tags[i]), value.asString());
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1158 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1159 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1160 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1161
2869
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1162 OrthancRestApi::GetApi(call).SubmitCommandsJob
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1163 (call, job.release(), true /* synchronous by default */, request);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1164 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1165
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1166
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1167 static void MergeStudy(RestApiPostCall& call)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1168 {
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1169 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1170 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1171 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1172 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1173 .SetTag("Studies")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1174 .SetSummary("Merge study")
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4712
diff changeset
1175 .SetDescription("Start a new job so as to move some DICOM resources into the DICOM study whose Orthanc identifier "
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1176 "is provided in the URL: https://book.orthanc-server.com/users/anonymization.html#merging")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1177 .SetUriArgument("id", "Orthanc identifier of the study of interest")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1178 .SetRequestField(RESOURCES, RestApiCallDocumentation::Type_JsonListOfStrings,
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4712
diff changeset
1179 "The list of DICOM resources (studies, series, and/or instances) to be merged "
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1180 "into the study of interest (mandatory option)", true)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1181 .SetRequestField(KEEP_SOURCE, RestApiCallDocumentation::Type_Boolean,
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1182 "If set to `true`, instructs Orthanc to keep a copy of the original resources in their source study. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1183 "By default, the original resources are deleted from Orthanc.", false);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1184 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1185 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1186
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1187 ServerContext& context = OrthancRestApi::GetContext(call);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1188
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1189 Json::Value request;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1190 if (!call.ParseJsonRequest(request))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1191 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1192 // Bad JSON request
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1193 throw OrthancException(ErrorCode_BadFileFormat);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1194 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1195
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1196 const std::string study = call.GetUriComponent("id", "");
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1197
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
1198 std::unique_ptr<MergeStudyJob> job(new MergeStudyJob(context, study));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1199 job->SetOrigin(call);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1200
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1201 std::vector<std::string> resources;
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1202 SerializationToolbox::ReadArrayOfStrings(resources, request, RESOURCES);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1203
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1204 for (size_t i = 0; i < resources.size(); i++)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1205 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1206 job->AddSource(resources[i]);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1207 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1208
2860
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1209 job->AddTrailingStep();
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1210
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1211 SetKeepSource(*job, request);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1212
2869
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1213 OrthancRestApi::GetApi(call).SubmitCommandsJob
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1214 (call, job.release(), true /* synchronous by default */, request);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1215 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1216
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1217
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1218 void OrthancRestApi::RegisterAnonymizeModify()
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1219 {
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1220 Register("/instances/{id}/modify", ModifyInstance);
2639
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1221 Register("/series/{id}/modify", ModifyResource<ResourceType_Series>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1222 Register("/studies/{id}/modify", ModifyResource<ResourceType_Study>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1223 Register("/patients/{id}/modify", ModifyResource<ResourceType_Patient>);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1224 Register("/tools/bulk-modify", BulkModify);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1225
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1226 Register("/instances/{id}/anonymize", AnonymizeInstance);
2639
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1227 Register("/series/{id}/anonymize", AnonymizeResource<ResourceType_Series>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1228 Register("/studies/{id}/anonymize", AnonymizeResource<ResourceType_Study>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1229 Register("/patients/{id}/anonymize", AnonymizeResource<ResourceType_Patient>);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1230 Register("/tools/bulk-anonymize", BulkAnonymize);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1231
1120
009dce4ea2f6 /tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1010
diff changeset
1232 Register("/tools/create-dicom", CreateDicom);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1233
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1234 Register("/studies/{id}/split", SplitStudy);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1235 Register("/studies/{id}/merge", MergeStudy);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1236 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1237 }