Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3075:ead8576a02ef db-changes
IDatabaseWrapper::ApplyLookupResources now returns lists
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 02 Jan 2019 18:39:25 +0100 |
parents | 0e9d1731b1b0 |
children | 1a75595d8e44 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
0 | 53 |
54 #include <boost/lexical_cast.hpp> | |
55 #include <stdio.h> | |
56 | |
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57 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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58 |
62 | 59 namespace Orthanc |
0 | 60 { |
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61 static void CopyListToVector(std::vector<std::string>& target, |
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62 const std::list<std::string>& source) |
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63 { |
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64 target.resize(source.size()); |
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65 |
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66 size_t pos = 0; |
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67 |
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68 for (std::list<std::string>::const_iterator |
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69 it = source.begin(); it != source.end(); ++it) |
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70 { |
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71 target[pos] = *it; |
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72 pos ++; |
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73 } |
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74 } |
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75 |
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76 |
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77 class ServerIndex::Listener : public IDatabaseListener |
0 | 78 { |
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79 private: |
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80 struct FileToRemove |
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81 { |
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82 private: |
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83 std::string uuid_; |
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84 FileContentType type_; |
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85 |
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86 public: |
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87 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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88 type_(info.GetContentType()) |
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89 { |
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90 } |
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91 |
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92 const std::string& GetUuid() const |
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93 { |
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94 return uuid_; |
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95 } |
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96 |
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97 FileContentType GetContentType() const |
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98 { |
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99 return type_; |
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100 } |
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101 }; |
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102 |
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103 ServerContext& context_; |
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104 bool hasRemainingLevel_; |
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105 ResourceType remainingType_; |
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106 std::string remainingPublicId_; |
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107 std::list<FileToRemove> pendingFilesToRemove_; |
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108 std::list<ServerIndexChange> pendingChanges_; |
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109 uint64_t sizeOfFilesToRemove_; |
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110 bool insideTransaction_; |
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111 |
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112 void Reset() |
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113 { |
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114 sizeOfFilesToRemove_ = 0; |
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115 hasRemainingLevel_ = false; |
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116 pendingFilesToRemove_.clear(); |
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117 pendingChanges_.clear(); |
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118 } |
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119 |
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120 public: |
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121 Listener(ServerContext& context) : context_(context), |
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122 insideTransaction_(false) |
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123 { |
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124 Reset(); |
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125 assert(ResourceType_Patient < ResourceType_Study && |
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126 ResourceType_Study < ResourceType_Series && |
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127 ResourceType_Series < ResourceType_Instance); |
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128 } |
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129 |
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130 void StartTransaction() |
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131 { |
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132 Reset(); |
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133 insideTransaction_ = true; |
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134 } |
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135 |
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136 void EndTransaction() |
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137 { |
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138 insideTransaction_ = false; |
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139 } |
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140 |
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141 uint64_t GetSizeOfFilesToRemove() |
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142 { |
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143 return sizeOfFilesToRemove_; |
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144 } |
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145 |
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146 void CommitFilesToRemove() |
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147 { |
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148 for (std::list<FileToRemove>::const_iterator |
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149 it = pendingFilesToRemove_.begin(); |
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150 it != pendingFilesToRemove_.end(); ++it) |
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151 { |
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152 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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153 } |
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154 } |
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155 |
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156 void CommitChanges() |
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157 { |
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158 for (std::list<ServerIndexChange>::const_iterator |
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159 it = pendingChanges_.begin(); |
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160 it != pendingChanges_.end(); ++it) |
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161 { |
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162 context_.SignalChange(*it); |
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163 } |
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164 } |
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165 |
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166 virtual void SignalRemainingAncestor(ResourceType parentType, |
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167 const std::string& publicId) |
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168 { |
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169 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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170 |
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171 if (hasRemainingLevel_) |
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172 { |
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173 if (parentType < remainingType_) |
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174 { |
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175 remainingType_ = parentType; |
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176 remainingPublicId_ = publicId; |
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177 } |
1158 | 178 } |
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179 else |
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180 { |
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181 hasRemainingLevel_ = true; |
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182 remainingType_ = parentType; |
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183 remainingPublicId_ = publicId; |
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184 } |
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185 } |
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186 |
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187 virtual void SignalFileDeleted(const FileInfo& info) |
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188 { |
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189 assert(Toolbox::IsUuid(info.GetUuid())); |
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190 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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191 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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192 } |
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193 |
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194 virtual void SignalChange(const ServerIndexChange& change) |
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195 { |
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196 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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197 << EnumerationToString(change.GetResourceType()) << ": " |
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198 << EnumerationToString(change.GetChangeType()); |
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199 |
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200 if (insideTransaction_) |
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201 { |
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202 pendingChanges_.push_back(change); |
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203 } |
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204 else |
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205 { |
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206 context_.SignalChange(change); |
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207 } |
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208 } |
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209 |
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210 bool HasRemainingLevel() const |
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211 { |
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212 return hasRemainingLevel_; |
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213 } |
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214 |
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215 ResourceType GetRemainingType() const |
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216 { |
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217 assert(HasRemainingLevel()); |
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218 return remainingType_; |
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219 } |
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220 |
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221 const std::string& GetRemainingPublicId() const |
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222 { |
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223 assert(HasRemainingLevel()); |
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224 return remainingPublicId_; |
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225 } |
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226 }; |
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228 | |
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229 class ServerIndex::Transaction |
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230 { |
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231 private: |
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232 ServerIndex& index_; |
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233 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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234 bool isCommitted_; |
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235 |
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236 public: |
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237 Transaction(ServerIndex& index) : |
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238 index_(index), |
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239 isCommitted_(false) |
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240 { |
1247 | 241 transaction_.reset(index_.db_.StartTransaction()); |
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242 transaction_->Begin(); |
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243 |
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244 index_.listener_->StartTransaction(); |
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245 } |
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246 |
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247 ~Transaction() |
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248 { |
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249 index_.listener_->EndTransaction(); |
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250 |
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251 if (!isCommitted_) |
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252 { |
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253 transaction_->Rollback(); |
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254 } |
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255 } |
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256 |
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257 void Commit(uint64_t sizeOfAddedFiles) |
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258 { |
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259 if (!isCommitted_) |
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260 { |
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261 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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262 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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263 |
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264 transaction_->Commit(delta); |
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265 |
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266 // We can remove the files once the SQLite transaction has |
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267 // been successfully committed. Some files might have to be |
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268 // deleted because of recycling. |
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269 index_.listener_->CommitFilesToRemove(); |
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270 |
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271 // Send all the pending changes to the Orthanc plugins |
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272 index_.listener_->CommitChanges(); |
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273 |
278
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274 isCommitted_ = true; |
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275 } |
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276 } |
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277 }; |
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278 |
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279 |
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280 class ServerIndex::UnstableResourcePayload |
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281 { |
1177
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282 private: |
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283 ResourceType type_; |
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284 std::string publicId_; |
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285 boost::posix_time::ptime time_; |
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286 |
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287 public: |
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288 UnstableResourcePayload() : type_(ResourceType_Instance) |
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289 { |
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290 } |
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291 |
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292 UnstableResourcePayload(Orthanc::ResourceType type, |
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293 const std::string& publicId) : |
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294 type_(type), |
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295 publicId_(publicId) |
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296 { |
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297 time_ = boost::posix_time::second_clock::local_time(); |
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298 } |
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299 |
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300 unsigned int GetAge() const |
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301 { |
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302 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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303 } |
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304 |
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305 ResourceType GetResourceType() const |
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306 { |
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307 return type_; |
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308 } |
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309 |
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310 const std::string& GetPublicId() const |
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311 { |
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312 return publicId_; |
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313 } |
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314 }; |
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315 |
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316 |
3027 | 317 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
318 { | |
319 private: | |
320 class TagInfo | |
321 { | |
322 private: | |
323 ResourceType level_; | |
324 DicomTagType type_; | |
325 | |
326 public: | |
327 TagInfo() | |
328 { | |
329 } | |
330 | |
331 TagInfo(ResourceType level, | |
332 DicomTagType type) : | |
333 level_(level), | |
334 type_(type) | |
335 { | |
336 } | |
337 | |
338 ResourceType GetLevel() const | |
339 { | |
340 return level_; | |
341 } | |
342 | |
343 DicomTagType GetType() const | |
344 { | |
345 return type_; | |
346 } | |
347 }; | |
348 | |
349 typedef std::map<DicomTag, TagInfo> Registry; | |
350 | |
351 | |
352 Registry registry_; | |
353 | |
354 void LoadTags(ResourceType level) | |
355 { | |
356 const DicomTag* tags = NULL; | |
357 size_t size; | |
358 | |
359 ServerToolbox::LoadIdentifiers(tags, size, level); | |
360 | |
361 for (size_t i = 0; i < size; i++) | |
362 { | |
363 if (registry_.find(tags[i]) == registry_.end()) | |
364 { | |
365 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); | |
366 } | |
367 else | |
368 { | |
369 // These patient-level tags are copied in the study level | |
370 assert(level == ResourceType_Study && | |
371 (tags[i] == DICOM_TAG_PATIENT_ID || | |
372 tags[i] == DICOM_TAG_PATIENT_NAME || | |
373 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); | |
374 } | |
375 } | |
376 | |
377 DicomMap::LoadMainDicomTags(tags, size, level); | |
378 | |
379 for (size_t i = 0; i < size; i++) | |
380 { | |
381 if (registry_.find(tags[i]) == registry_.end()) | |
382 { | |
383 registry_[tags[i]] = TagInfo(level, DicomTagType_Main); | |
384 } | |
385 } | |
386 } | |
387 | |
388 public: | |
389 MainDicomTagsRegistry() | |
390 { | |
391 LoadTags(ResourceType_Patient); | |
392 LoadTags(ResourceType_Study); | |
393 LoadTags(ResourceType_Series); | |
394 LoadTags(ResourceType_Instance); | |
395 } | |
396 | |
397 void LookupTag(ResourceType& level, | |
398 DicomTagType& type, | |
399 const DicomTag& tag) const | |
400 { | |
401 Registry::const_iterator it = registry_.find(tag); | |
402 | |
403 if (it == registry_.end()) | |
404 { | |
405 // Default values | |
406 level = ResourceType_Instance; | |
407 type = DicomTagType_Generic; | |
408 } | |
409 else | |
410 { | |
411 level = it->second.GetLevel(); | |
412 type = it->second.GetType(); | |
413 } | |
414 } | |
415 }; | |
416 | |
417 | |
212 | 418 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 419 const std::string& uuid, |
202 | 420 ResourceType expectedType) |
0 | 421 { |
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422 boost::mutex::scoped_lock lock(mutex_); |
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423 |
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424 Transaction t(*this); |
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425 |
202 | 426 int64_t id; |
427 ResourceType type; | |
1294 | 428 if (!db_.LookupResource(id, type, uuid) || |
202 | 429 expectedType != type) |
0 | 430 { |
431 return false; | |
432 } | |
202 | 433 |
1247 | 434 db_.DeleteResource(id); |
0 | 435 |
202 | 436 if (listener_->HasRemainingLevel()) |
0 | 437 { |
202 | 438 ResourceType type = listener_->GetRemainingType(); |
439 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 440 |
441 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 442 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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443 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 444 target["RemainingAncestor"]["ID"] = uuid; |
445 } | |
446 else | |
447 { | |
448 target["RemainingAncestor"] = Json::nullValue; | |
449 } | |
450 | |
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451 t.Commit(0); |
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452 |
0 | 453 return true; |
454 } | |
455 | |
456 | |
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457 void ServerIndex::FlushThread(ServerIndex* that, |
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458 unsigned int threadSleep) |
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459 { |
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460 // By default, wait for 10 seconds before flushing |
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461 unsigned int sleep = 10; |
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462 |
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463 try |
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464 { |
744 | 465 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 466 std::string sleepString; |
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467 |
1247 | 468 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 469 Toolbox::IsInteger(sleepString)) |
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470 { |
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471 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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472 } |
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473 } |
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474 catch (boost::bad_lexical_cast&) |
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475 { |
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476 } |
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477 |
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478 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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479 |
511
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480 unsigned int count = 0; |
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481 |
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482 while (!that->done_) |
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483 { |
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484 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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485 count++; |
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486 if (count < sleep) |
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487 { |
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488 continue; |
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489 } |
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490 |
2217 | 491 Logging::Flush(); |
492 | |
511
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493 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 494 that->db_.FlushToDisk(); |
511
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495 count = 0; |
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496 } |
511
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497 |
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498 LOG(INFO) << "Stopping the database flushing thread"; |
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499 } |
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500 |
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501 |
1247 | 502 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 503 int64_t series, |
504 const DicomMap& dicomSummary) | |
505 { | |
506 try | |
507 { | |
656 | 508 const DicomValue* value; |
509 const DicomValue* value2; | |
510 | |
433 | 511 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
512 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
513 { | |
514 // Patch for series with temporal positions thanks to Will Ryder | |
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515 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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516 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 517 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
518 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
519 } | |
520 | |
521 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
522 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
523 { | |
524 // Support of Cardio-PET images | |
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525 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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526 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 527 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
528 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
529 } | |
530 | |
531 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
532 { | |
1737
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533 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 534 } |
535 } | |
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536 catch (OrthancException&) |
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537 { |
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538 } |
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539 catch (boost::bad_lexical_cast&) |
433 | 540 { |
541 } | |
542 } | |
543 | |
544 | |
1237 | 545 |
546 | |
1238 | 547 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 548 int64_t id, |
549 MetadataType type) | |
550 { | |
1238 | 551 std::string s; |
1247 | 552 if (!db_.LookupMetadata(s, id, type)) |
1237 | 553 { |
554 return false; | |
555 } | |
556 | |
557 try | |
558 { | |
1238 | 559 result = boost::lexical_cast<int64_t>(s); |
1237 | 560 return true; |
561 } | |
562 catch (boost::bad_lexical_cast&) | |
563 { | |
564 return false; | |
565 } | |
566 } | |
567 | |
568 | |
1297 | 569 void ServerIndex::LogChange(int64_t internalId, |
570 ChangeType changeType, | |
571 ResourceType resourceType, | |
572 const std::string& publicId) | |
573 { | |
574 ServerIndexChange change(changeType, resourceType, publicId); | |
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575 |
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576 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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577 { |
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578 db_.LogChange(internalId, change); |
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579 } |
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580 |
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581 assert(listener_.get() != NULL); |
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582 listener_->SignalChange(change); |
1297 | 583 } |
584 | |
1237 | 585 |
586 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
587 { | |
588 std::string oldValue; | |
589 | |
1247 | 590 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 591 { |
592 uint64_t oldNumber; | |
593 | |
594 try | |
595 { | |
596 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 597 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 598 return oldNumber + 1; |
599 } | |
600 catch (boost::bad_lexical_cast&) | |
601 { | |
602 throw OrthancException(ErrorCode_InternalError); | |
603 } | |
604 } | |
605 else | |
606 { | |
607 // Initialize the sequence at "1" | |
1247 | 608 db_.SetGlobalProperty(property, "1"); |
1237 | 609 return 1; |
610 } | |
611 } | |
612 | |
613 | |
614 | |
1299 | 615 int64_t ServerIndex::CreateResource(const std::string& publicId, |
616 ResourceType type) | |
617 { | |
618 int64_t id = db_.CreateResource(publicId, type); | |
619 | |
620 ChangeType changeType; | |
621 switch (type) | |
622 { | |
623 case ResourceType_Patient: | |
624 changeType = ChangeType_NewPatient; | |
625 break; | |
626 | |
627 case ResourceType_Study: | |
628 changeType = ChangeType_NewStudy; | |
629 break; | |
630 | |
631 case ResourceType_Series: | |
632 changeType = ChangeType_NewSeries; | |
633 break; | |
634 | |
635 case ResourceType_Instance: | |
636 changeType = ChangeType_NewInstance; | |
637 break; | |
638 | |
639 default: | |
640 throw OrthancException(ErrorCode_InternalError); | |
641 } | |
642 | |
643 ServerIndexChange change(changeType, type, publicId); | |
644 db_.LogChange(id, change); | |
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645 |
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646 assert(listener_.get() != NULL); |
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647 listener_->SignalChange(change); |
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648 |
1299 | 649 return id; |
650 } | |
651 | |
1286 | 652 |
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653 ServerIndex::ServerIndex(ServerContext& context, |
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654 IDatabaseWrapper& db, |
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655 unsigned int threadSleep) : |
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656 done_(false), |
1247 | 657 db_(db), |
269
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658 maximumStorageSize_(0), |
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659 maximumPatients_(0), |
3027 | 660 overwrite_(false), |
661 mainDicomTagsRegistry_(new MainDicomTagsRegistry) | |
186
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662 { |
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663 listener_.reset(new Listener(context)); |
1247 | 664 db_.SetListener(*listener_); |
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665 |
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666 // Initial recycling if the parameters have changed since the last |
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667 // execution of Orthanc |
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668 StandaloneRecycling(); |
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669 |
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670 if (db.HasFlushToDisk()) |
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671 { |
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672 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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673 } |
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674 |
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675 unstableResourcesMonitorThread_ = boost::thread |
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676 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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677 } |
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678 |
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679 |
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680 |
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681 ServerIndex::~ServerIndex() |
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682 { |
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683 if (!done_) |
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684 { |
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685 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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686 Stop(); |
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687 } |
0 | 688 } |
689 | |
690 | |
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691 |
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692 void ServerIndex::Stop() |
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693 { |
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694 if (!done_) |
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695 { |
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696 done_ = true; |
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697 |
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698 if (db_.HasFlushToDisk() && |
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699 flushThread_.joinable()) |
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700 { |
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701 flushThread_.join(); |
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702 } |
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703 |
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704 if (unstableResourcesMonitorThread_.joinable()) |
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705 { |
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706 unstableResourcesMonitorThread_.join(); |
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707 } |
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708 } |
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709 } |
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710 |
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711 |
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712 |
2188 | 713 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
714 int64_t instance, | |
715 MetadataType metadata, | |
716 const std::string& value) | |
717 { | |
718 db_.SetMetadata(instance, metadata, value); | |
719 instanceMetadata[metadata] = value; | |
720 } | |
721 | |
722 | |
723 | |
1006
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724 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 725 DicomInstanceToStore& instanceToStore, |
726 const Attachments& attachments) | |
0 | 727 { |
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728 boost::mutex::scoped_lock lock(mutex_); |
0 | 729 |
1822 | 730 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
731 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
732 | |
1006
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733 instanceMetadata.clear(); |
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734 |
0 | 735 try |
736 { | |
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737 Transaction t(*this); |
0 | 738 |
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739 // Check whether this instance is already stored |
0 | 740 { |
432 | 741 ResourceType type; |
742 int64_t tmp; | |
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743 if (db_.LookupResource(tmp, type, instanceToStore.GetHasher().HashInstance())) |
432 | 744 { |
745 assert(type == ResourceType_Instance); | |
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746 |
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747 if (overwrite_) |
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748 { |
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749 // Overwrite the old instance |
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750 LOG(INFO) << "Overwriting instance: " << instanceToStore.GetHasher().HashInstance(); |
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751 db_.DeleteResource(tmp); |
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752 } |
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753 else |
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754 { |
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755 // Do nothing if the instance already exists |
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756 db_.GetAllMetadata(instanceMetadata, tmp); |
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757 return StoreStatus_AlreadyStored; |
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758 } |
432 | 759 } |
0 | 760 } |
761 | |
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762 // Ensure there is enough room in the storage for the new instance |
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763 uint64_t instanceSize = 0; |
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764 for (Attachments::const_iterator it = attachments.begin(); |
656 | 765 it != attachments.end(); ++it) |
268
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766 { |
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767 instanceSize += it->GetCompressedSize(); |
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768 } |
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769 |
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770 Recycle(instanceSize, instanceToStore.GetHasher().HashPatient()); |
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771 |
202 | 772 // Create the instance |
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773 int64_t instance = CreateResource(instanceToStore.GetHasher().HashInstance(), ResourceType_Instance); |
2120 | 774 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 775 |
432 | 776 // Detect up to which level the patient/study/series/instance |
777 // hierarchy must be created | |
778 int64_t patient = -1, study = -1, series = -1; | |
779 bool isNewPatient = false; | |
780 bool isNewStudy = false; | |
781 bool isNewSeries = false; | |
782 | |
0 | 783 { |
432 | 784 ResourceType dummy; |
785 | |
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786 if (db_.LookupResource(series, dummy, instanceToStore.GetHasher().HashSeries())) |
432 | 787 { |
788 assert(dummy == ResourceType_Series); | |
789 // The patient, the study and the series already exist | |
790 | |
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791 bool ok = (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()) && |
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792 db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())); |
432 | 793 assert(ok); |
794 } | |
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795 else if (db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())) |
432 | 796 { |
797 assert(dummy == ResourceType_Study); | |
798 | |
799 // New series: The patient and the study already exist | |
800 isNewSeries = true; | |
801 | |
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DicomInstanceToStore::GetHasher()
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802 bool ok = db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()); |
432 | 803 assert(ok); |
804 } | |
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805 else if (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient())) |
432 | 806 { |
807 assert(dummy == ResourceType_Patient); | |
808 | |
809 // New study and series: The patient already exist | |
810 isNewStudy = true; | |
811 isNewSeries = true; | |
812 } | |
813 else | |
814 { | |
815 // New patient, study and series: Nothing exists | |
816 isNewPatient = true; | |
817 isNewStudy = true; | |
818 isNewSeries = true; | |
819 } | |
820 } | |
821 | |
822 // Create the series if needed | |
823 if (isNewSeries) | |
824 { | |
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825 series = CreateResource(instanceToStore.GetHasher().HashSeries(), ResourceType_Series); |
2120 | 826 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 827 } |
202 | 828 |
432 | 829 // Create the study if needed |
830 if (isNewStudy) | |
831 { | |
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832 study = CreateResource(instanceToStore.GetHasher().HashStudy(), ResourceType_Study); |
2120 | 833 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 834 } |
835 | |
836 // Create the patient if needed | |
837 if (isNewPatient) | |
838 { | |
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839 patient = CreateResource(instanceToStore.GetHasher().HashPatient(), ResourceType_Patient); |
2120 | 840 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 841 } |
202 | 842 |
432 | 843 // Create the parent-to-child links |
1247 | 844 db_.AttachChild(series, instance); |
432 | 845 |
846 if (isNewSeries) | |
847 { | |
1247 | 848 db_.AttachChild(study, series); |
0 | 849 } |
432 | 850 |
851 if (isNewStudy) | |
0 | 852 { |
1247 | 853 db_.AttachChild(patient, study); |
0 | 854 } |
855 | |
432 | 856 // Sanity checks |
857 assert(patient != -1); | |
858 assert(study != -1); | |
859 assert(series != -1); | |
860 assert(instance != -1); | |
861 | |
202 | 862 // Attach the files to the newly created instance |
232
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863 for (Attachments::const_iterator it = attachments.begin(); |
656 | 864 it != attachments.end(); ++it) |
232
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865 { |
1247 | 866 db_.AddAttachment(instance, *it); |
232
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867 } |
202 | 868 |
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869 // Attach the user-specified metadata |
1006
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870 for (MetadataMap::const_iterator |
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871 it = metadata.begin(); it != metadata.end(); ++it) |
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872 { |
1006
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|
873 switch (it->first.first) |
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874 { |
1006
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875 case ResourceType_Patient: |
1247 | 876 db_.SetMetadata(patient, it->first.second, it->second); |
1006
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877 break; |
1002
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878 |
1006
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879 case ResourceType_Study: |
1247 | 880 db_.SetMetadata(study, it->first.second, it->second); |
1006
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881 break; |
1002
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882 |
1006
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883 case ResourceType_Series: |
1247 | 884 db_.SetMetadata(series, it->first.second, it->second); |
1006
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885 break; |
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886 |
1006
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887 case ResourceType_Instance: |
2188 | 888 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
1006
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diff
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889 break; |
1002
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diff
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|
890 |
1006
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diff
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|
891 default: |
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892 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1002
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|
893 } |
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|
894 } |
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diff
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|
895 |
1004
a226e0959d8b
DicomInstanceToStore
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diff
changeset
|
896 // Attach the auto-computed metadata for the patient/study/series levels |
2475
8cc3ca64a534
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Sebastien Jodogne <s.jodogne@gmail.com>
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2447
diff
changeset
|
897 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
1247 | 898 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
899 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
900 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
a226e0959d8b
DicomInstanceToStore
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diff
changeset
|
901 |
a226e0959d8b
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diff
changeset
|
902 // Attach the auto-computed metadata for the instance level, |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
903 // reflecting these additions into the input metadata map |
2188 | 904 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
2640
c691fcf66071
ResourceModificationJob
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parents:
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diff
changeset
|
905 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, |
2664
a21b244efb37
serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
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2640
diff
changeset
|
906 instanceToStore.GetOrigin().GetRemoteAetC()); |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
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2188
diff
changeset
|
907 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
2640
c691fcf66071
ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
908 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
2726
46061a91c88a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
909 |
1823
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1822
diff
changeset
|
910 { |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
911 std::string s; |
2726
46061a91c88a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
912 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
913 if (instanceToStore.LookupTransferSyntax(s)) |
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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diff
changeset
|
914 { |
2726
46061a91c88a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2717
diff
changeset
|
915 // New in Orthanc 1.2.0 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
916 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
917 } |
2726
46061a91c88a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
918 |
46061a91c88a
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diff
changeset
|
919 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
46061a91c88a
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diff
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|
920 { |
46061a91c88a
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diff
changeset
|
921 // New in Orthanc 1.4.0 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
922 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteIp, s); |
46061a91c88a
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diff
changeset
|
923 } |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
924 |
46061a91c88a
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parents:
2717
diff
changeset
|
925 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
46061a91c88a
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diff
changeset
|
926 { |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
927 // New in Orthanc 1.4.0 |
46061a91c88a
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diff
changeset
|
928 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_CalledAet, s); |
46061a91c88a
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diff
changeset
|
929 } |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
930 |
46061a91c88a
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parents:
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diff
changeset
|
931 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
932 { |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
933 // New in Orthanc 1.4.0 |
46061a91c88a
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diff
changeset
|
934 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_HttpUsername, s); |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
935 } |
1823
0ef4e6e66b56
"Origin" metadata for the instances
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parents:
1822
diff
changeset
|
936 } |
0ef4e6e66b56
"Origin" metadata for the instances
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parents:
1822
diff
changeset
|
937 |
202 | 938 const DicomValue* value; |
2208
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
939 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
940 !value->IsNull() && |
90ea60bee5ff
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parents:
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diff
changeset
|
941 !value->IsBinary()) |
90ea60bee5ff
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parents:
2189
diff
changeset
|
942 { |
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parents:
2189
diff
changeset
|
943 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
90ea60bee5ff
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parents:
2189
diff
changeset
|
944 } |
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New metadata automatically computed at the instance level: "SopClassUid"
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parents:
2189
diff
changeset
|
945 |
202 | 946 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
947 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 948 { |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
949 if (!value->IsNull() && |
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950 !value->IsBinary()) |
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951 { |
2188 | 952 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
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953 } |
0 | 954 } |
955 | |
1004
a226e0959d8b
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|
956 // Check whether the series of this new instance is now completed |
202 | 957 if (isNewSeries) |
958 { | |
1247 | 959 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 960 } |
961 | |
205
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962 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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963 if (seriesStatus == SeriesStatus_Complete) |
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964 { |
2898
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965 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
205
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966 } |
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967 |
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968 // Mark the parent resources of this instance as unstable |
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969 MarkAsUnstable(series, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
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970 MarkAsUnstable(study, ResourceType_Study, instanceToStore.GetHasher().HashStudy()); |
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971 MarkAsUnstable(patient, ResourceType_Patient, instanceToStore.GetHasher().HashPatient()); |
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972 |
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973 t.Commit(instanceSize); |
268
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974 |
0 | 975 return StoreStatus_Success; |
976 } | |
62 | 977 catch (OrthancException& e) |
0 | 978 { |
1247 | 979 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 980 } |
981 | |
982 return StoreStatus_Failure; | |
983 } | |
984 | |
985 | |
238 | 986 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 987 { |
206
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988 boost::mutex::scoped_lock lock(mutex_); |
238 | 989 target = Json::objectValue; |
0 | 990 |
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991 uint64_t cs = db_.GetTotalCompressedSize(); |
1247 | 992 uint64_t us = db_.GetTotalUncompressedSize(); |
440
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diff
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|
993 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 994 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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995 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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996 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 997 |
1247 | 998 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
999 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
1000 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
1001 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 1002 } |
1003 | |
187
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1004 |
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1005 |
585 | 1006 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 1007 { |
1008 // Get the expected number of instances in this series (from the metadata) | |
1238 | 1009 int64_t expected; |
1010 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 1011 { |
1012 return SeriesStatus_Unknown; | |
1013 } | |
1014 | |
1015 // Loop over the instances of this series | |
1016 std::list<int64_t> children; | |
1247 | 1017 db_.GetChildrenInternalId(children, id); |
199 | 1018 |
1238 | 1019 std::set<int64_t> instances; |
199 | 1020 for (std::list<int64_t>::const_iterator |
656 | 1021 it = children.begin(); it != children.end(); ++it) |
199 | 1022 { |
1023 // Get the index of this instance in the series | |
1238 | 1024 int64_t index; |
1025 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 1026 { |
1027 return SeriesStatus_Unknown; | |
1028 } | |
1029 | |
656 | 1030 if (!(index > 0 && index <= expected)) |
199 | 1031 { |
1032 // Out-of-range instance index | |
1033 return SeriesStatus_Inconsistent; | |
1034 } | |
1035 | |
1036 if (instances.find(index) != instances.end()) | |
1037 { | |
1038 // Twice the same instance index | |
1039 return SeriesStatus_Inconsistent; | |
1040 } | |
1041 | |
1042 instances.insert(index); | |
1043 } | |
1044 | |
1238 | 1045 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 1046 { |
1047 return SeriesStatus_Complete; | |
1048 } | |
1049 else | |
1050 { | |
1051 return SeriesStatus_Missing; | |
1052 } | |
1053 } | |
1054 | |
1055 | |
202 | 1056 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
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1057 int64_t resourceId, |
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1058 ResourceType resourceType) |
198
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1059 { |
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1060 DicomMap tags; |
1247 | 1061 db_.GetMainDicomTags(tags, resourceId); |
1676
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1062 |
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1063 if (resourceType == ResourceType_Study) |
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|
1064 { |
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diff
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|
1065 DicomMap t1, t2; |
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|
1066 tags.ExtractStudyInformation(t1); |
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1067 tags.ExtractPatientInformation(t2); |
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1068 |
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1069 target["MainDicomTags"] = Json::objectValue; |
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|
1070 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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|
1071 |
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|
1072 target["PatientMainDicomTags"] = Json::objectValue; |
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|
1073 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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|
1074 } |
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diff
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|
1075 else |
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diff
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|
1076 { |
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diff
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|
1077 target["MainDicomTags"] = Json::objectValue; |
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|
1078 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1079 } |
198
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1080 } |
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1081 |
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1082 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1083 const std::string& publicId, |
1084 ResourceType expectedType) | |
198
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1085 { |
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1086 result = Json::objectValue; |
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1087 |
206
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1088 boost::mutex::scoped_lock lock(mutex_); |
199 | 1089 |
198
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1090 // Lookup for the requested resource |
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1091 int64_t id; |
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1092 ResourceType type; |
1294 | 1093 if (!db_.LookupResource(id, type, publicId) || |
199 | 1094 type != expectedType) |
198
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1095 { |
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1096 return false; |
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1097 } |
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1098 |
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1099 // Find the parent resource (if it exists) |
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1100 if (type != ResourceType_Patient) |
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1101 { |
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1102 int64_t parentId; |
1247 | 1103 if (!db_.LookupParent(parentId, id)) |
198
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1104 { |
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1105 throw OrthancException(ErrorCode_InternalError); |
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1106 } |
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1107 |
1247 | 1108 std::string parent = db_.GetPublicId(parentId); |
198
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1109 |
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1110 switch (type) |
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1111 { |
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1112 case ResourceType_Study: |
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1113 result["ParentPatient"] = parent; |
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1114 break; |
198
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1115 |
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1116 case ResourceType_Series: |
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1117 result["ParentStudy"] = parent; |
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1118 break; |
198
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1119 |
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1120 case ResourceType_Instance: |
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1121 result["ParentSeries"] = parent; |
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1122 break; |
198
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1123 |
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1124 default: |
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1125 throw OrthancException(ErrorCode_InternalError); |
198
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1126 } |
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1127 } |
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1128 |
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1129 // List the children resources |
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1130 std::list<std::string> children; |
1247 | 1131 db_.GetChildrenPublicId(children, id); |
198
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1132 |
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1133 if (type != ResourceType_Instance) |
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1134 { |
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1135 Json::Value c = Json::arrayValue; |
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1136 |
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1137 for (std::list<std::string>::const_iterator |
656 | 1138 it = children.begin(); it != children.end(); ++it) |
198
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197
diff
changeset
|
1139 { |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1140 c.append(*it); |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1141 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1142 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1143 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1144 { |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1145 case ResourceType_Patient: |
f6fdf5abe751
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parents:
268
diff
changeset
|
1146 result["Studies"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1147 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1148 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1149 case ResourceType_Study: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1150 result["Series"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1151 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1152 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1153 case ResourceType_Series: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1154 result["Instances"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1155 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1156 |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1157 default: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1158 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1159 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1160 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1161 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1162 // Set the resource type |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1163 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1164 { |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1165 case ResourceType_Patient: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1166 result["Type"] = "Patient"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1167 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1168 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1169 case ResourceType_Study: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1170 result["Type"] = "Study"; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1171 break; |
199 | 1172 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1173 case ResourceType_Series: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1174 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1175 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1176 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1177 |
1238 | 1178 int64_t i; |
1237 | 1179 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1180 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1181 else |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1182 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1183 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1184 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1185 } |
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1186 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1187 case ResourceType_Instance: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1188 { |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1189 result["Type"] = "Instance"; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1190 |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1191 FileInfo attachment; |
1247 | 1192 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1193 { |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1194 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1195 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1196 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1197 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1198 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1199 |
1238 | 1200 int64_t i; |
1237 | 1201 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1202 result["IndexInSeries"] = static_cast<int>(i); |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1203 else |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1204 result["IndexInSeries"] = Json::nullValue; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1205 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1206 break; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1207 } |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1208 |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1209 default: |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1210 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1211 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1212 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1213 // Record the remaining information |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1214 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1215 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1216 |
315 | 1217 std::string tmp; |
1218 | |
1247 | 1219 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1220 { |
315 | 1221 result["AnonymizedFrom"] = tmp; |
1236 | 1222 } |
315 | 1223 |
1247 | 1224 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1225 { |
315 | 1226 result["ModifiedFrom"] = tmp; |
1236 | 1227 } |
315 | 1228 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1229 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1230 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1231 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1232 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1233 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1234 |
1247 | 1235 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1236 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1237 result["LastUpdate"] = tmp; |
1236 | 1238 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1239 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1240 |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1241 return true; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1242 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1243 |
0 | 1244 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1245 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1246 const std::string& instanceUuid, |
233 | 1247 FileContentType contentType) |
0 | 1248 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1249 boost::mutex::scoped_lock lock(mutex_); |
0 | 1250 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1251 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1252 ResourceType type; |
1294 | 1253 if (!db_.LookupResource(id, type, instanceUuid)) |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1254 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1255 throw OrthancException(ErrorCode_UnknownResource); |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1256 } |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1257 |
1247 | 1258 if (db_.LookupAttachment(attachment, id, contentType)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1259 { |
233 | 1260 assert(attachment.GetContentType() == contentType); |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1261 return true; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1262 } |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1263 else |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1264 { |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1265 return false; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1266 } |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1267 } |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1268 |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1269 |
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1270 |
1354 | 1271 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1272 ResourceType resourceType) |
0 | 1273 { |
1357 | 1274 boost::mutex::scoped_lock lock(mutex_); |
1275 db_.GetAllPublicIds(target, resourceType); | |
0 | 1276 } |
1277 | |
1278 | |
1509
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1279 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1280 ResourceType resourceType, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1281 size_t since, |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1282 size_t limit) |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1283 { |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1284 if (limit == 0) |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1285 { |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1286 target.clear(); |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1287 return; |
0586ed8897f1
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1288 } |
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1289 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1290 boost::mutex::scoped_lock lock(mutex_); |
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1291 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1292 } |
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1293 |
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|
1294 |
1244 | 1295 template <typename T> |
1296 static void FormatLog(Json::Value& target, | |
1297 const std::list<T>& log, | |
1298 const std::string& name, | |
1299 bool done, | |
1300 int64_t since) | |
1240 | 1301 { |
1302 Json::Value items = Json::arrayValue; | |
1244 | 1303 for (typename std::list<T>::const_iterator |
1304 | 1304 it = log.begin(); it != log.end(); ++it) |
1240 | 1305 { |
1306 Json::Value item; | |
1307 it->Format(item); | |
1308 items.append(item); | |
1309 } | |
1310 | |
1311 target = Json::objectValue; | |
1244 | 1312 target[name] = items; |
1240 | 1313 target["Done"] = done; |
1314 | |
1305 | 1315 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1316 target["Last"] = static_cast<int>(last); |
1317 } | |
1318 | |
1319 | |
1247 | 1320 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1321 int64_t since, |
0 | 1322 unsigned int maxResults) |
1323 { | |
1240 | 1324 std::list<ServerIndexChange> changes; |
1325 bool done; | |
1326 | |
1327 { | |
1328 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1329 |
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1330 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1331 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1332 Transaction transaction(*this); |
1247 | 1333 db_.GetChanges(changes, done, since, maxResults); |
2717
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1334 transaction.Commit(0); |
1240 | 1335 } |
1336 | |
1244 | 1337 FormatLog(target, changes, "Changes", done, since); |
237
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1338 } |
0 | 1339 |
1240 | 1340 |
1247 | 1341 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1342 { |
1240 | 1343 std::list<ServerIndexChange> changes; |
1344 | |
1345 { | |
1346 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1347 |
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1348 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1349 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1350 Transaction transaction(*this); |
1247 | 1351 db_.GetLastChange(changes); |
2717
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|
1352 transaction.Commit(0); |
1240 | 1353 } |
1354 | |
1244 | 1355 FormatLog(target, changes, "Changes", true, 0); |
0 | 1356 } |
231 | 1357 |
1240 | 1358 |
231 | 1359 void ServerIndex::LogExportedResource(const std::string& publicId, |
1360 const std::string& remoteModality) | |
1361 { | |
1362 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1363 Transaction transaction(*this); |
231 | 1364 |
1365 int64_t id; | |
1366 ResourceType type; | |
1294 | 1367 if (!db_.LookupResource(id, type, publicId)) |
231 | 1368 { |
2573
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1369 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1370 } |
1371 | |
1372 std::string patientId; | |
1373 std::string studyInstanceUid; | |
1374 std::string seriesInstanceUid; | |
1375 std::string sopInstanceUid; | |
1376 | |
1377 int64_t currentId = id; | |
1378 ResourceType currentType = type; | |
1379 | |
1380 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1381 bool done = false; | |
1382 while (!done) | |
1383 { | |
1384 DicomMap map; | |
1247 | 1385 db_.GetMainDicomTags(map, currentId); |
231 | 1386 |
1387 switch (currentType) | |
1388 { | |
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1389 case ResourceType_Patient: |
2090
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1390 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1391 { |
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1392 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1393 } |
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1394 done = true; |
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1395 break; |
231 | 1396 |
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1397 case ResourceType_Study: |
2090
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1398 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1399 { |
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1400 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1401 } |
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1402 currentType = ResourceType_Patient; |
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1403 break; |
231 | 1404 |
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1405 case ResourceType_Series: |
2090
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1406 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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|
1407 { |
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|
1408 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1409 } |
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1410 currentType = ResourceType_Study; |
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1411 break; |
231 | 1412 |
269
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1413 case ResourceType_Instance: |
2090
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|
1414 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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|
1415 { |
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|
1416 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1417 } |
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1418 currentType = ResourceType_Series; |
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1419 break; |
231 | 1420 |
269
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1421 default: |
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|
1422 throw OrthancException(ErrorCode_InternalError); |
231 | 1423 } |
1424 | |
1425 // If we have not reached the Patient level, find the parent of | |
1426 // the current resource | |
1427 if (!done) | |
1428 { | |
1247 | 1429 bool ok = db_.LookupParent(currentId, currentId); |
375
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|
1430 assert(ok); |
231 | 1431 } |
1432 } | |
1433 | |
1246 | 1434 ExportedResource resource(-1, |
1435 type, | |
1436 publicId, | |
1437 remoteModality, | |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1438 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1439 patientId, |
1440 studyInstanceUid, | |
1441 seriesInstanceUid, | |
1442 sopInstanceUid); | |
1310
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|
1443 |
1247 | 1444 db_.LogExportedResource(resource); |
1310
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|
1445 transaction.Commit(0); |
231 | 1446 } |
1447 | |
1448 | |
1247 | 1449 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1450 int64_t since, |
1451 unsigned int maxResults) | |
1452 { | |
1244 | 1453 std::list<ExportedResource> exported; |
1454 bool done; | |
1455 | |
1456 { | |
1457 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1458 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1459 } |
1460 | |
1461 FormatLog(target, exported, "Exports", done, since); | |
231 | 1462 } |
237
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1463 |
1244 | 1464 |
1247 | 1465 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1466 { |
1244 | 1467 std::list<ExportedResource> exported; |
1468 | |
1469 { | |
1470 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1471 db_.GetLastExportedResource(exported); |
1244 | 1472 } |
1473 | |
1474 FormatLog(target, exported, "Exports", true, 0); | |
237
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1475 } |
268
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1476 |
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1477 |
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1478 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1479 { |
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1480 if (maximumStorageSize_ != 0) |
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1481 { |
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diff
changeset
|
1482 assert(maximumStorageSize_ >= instanceSize); |
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1483 |
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1484 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
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1485 { |
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1486 return true; |
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1487 } |
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1488 } |
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1489 |
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1490 if (maximumPatients_ != 0) |
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1491 { |
1247 | 1492 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1493 if (patientCount > maximumPatients_) |
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1494 { |
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1495 return true; |
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1496 } |
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1497 } |
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1498 |
268
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1499 return false; |
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1500 } |
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1501 |
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1502 |
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1503 void ServerIndex::Recycle(uint64_t instanceSize, |
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1504 const std::string& newPatientId) |
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1505 { |
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1506 if (!IsRecyclingNeeded(instanceSize)) |
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1507 { |
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1508 return; |
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1509 } |
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1510 |
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1511 // Check whether other DICOM instances from this patient are |
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|
1512 // already stored |
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1513 int64_t patientToAvoid; |
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1514 ResourceType type; |
1294 | 1515 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1516 |
269
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1517 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1518 { |
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1519 throw OrthancException(ErrorCode_InternalError); |
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1520 } |
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1521 |
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1522 // Iteratively select patient to remove until there is enough |
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1523 // space in the DICOM store |
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1524 int64_t patientToRecycle; |
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1525 while (true) |
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1526 { |
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1527 // If other instances of this patient are already in the store, |
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1528 // we must avoid to recycle them |
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1529 bool ok = hasPatientToAvoid ? |
1247 | 1530 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1531 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1532 |
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1533 if (!ok) |
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1534 { |
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1535 throw OrthancException(ErrorCode_FullStorage); |
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1536 } |
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1537 |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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1538 VLOG(1) << "Recycling one patient"; |
1247 | 1539 db_.DeleteResource(patientToRecycle); |
269
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1540 |
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1541 if (!IsRecyclingNeeded(instanceSize)) |
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1542 { |
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1543 // OK, we're done |
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1544 break; |
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1545 } |
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1546 } |
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1547 } |
269
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1548 |
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1549 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1550 { |
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1551 boost::mutex::scoped_lock lock(mutex_); |
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1552 maximumPatients_ = count; |
270
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1553 |
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1554 if (count == 0) |
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1555 { |
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1556 LOG(WARNING) << "No limit on the number of stored patients"; |
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1557 } |
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1558 else |
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1559 { |
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1560 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1561 } |
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1562 |
269
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1563 StandaloneRecycling(); |
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1564 } |
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1565 |
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1566 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1567 { |
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1568 boost::mutex::scoped_lock lock(mutex_); |
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1569 maximumStorageSize_ = size; |
270
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1570 |
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1571 if (size == 0) |
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1572 { |
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1573 LOG(WARNING) << "No limit on the size of the storage area"; |
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1574 } |
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|
1575 else |
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|
1576 { |
440
23e5b35e3c5c
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diff
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|
1577 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1578 } |
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1579 |
269
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1580 StandaloneRecycling(); |
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1581 } |
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1582 |
2825
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diff
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|
1583 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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diff
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|
1584 { |
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2726
diff
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|
1585 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
1586 overwrite_ = overwrite; |
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diff
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|
1587 } |
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diff
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|
1588 |
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|
1589 |
272
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|
1590 void ServerIndex::StandaloneRecycling() |
269
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1591 { |
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1592 // WARNING: No mutex here, do not include this as a public method |
278
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|
1593 Transaction t(*this); |
269
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1594 Recycle(0, ""); |
278
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|
1595 t.Commit(0); |
269
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1596 } |
272
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|
1597 |
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|
1598 |
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1599 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1600 { |
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1601 boost::mutex::scoped_lock lock(mutex_); |
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1602 |
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1603 // Lookup for the requested resource |
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1604 int64_t id; |
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1605 ResourceType type; |
1294 | 1606 if (!db_.LookupResource(id, type, publicId) || |
272
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1607 type != ResourceType_Patient) |
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1608 { |
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1609 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1610 } |
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1611 |
1247 | 1612 return db_.IsProtectedPatient(id); |
272
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1613 } |
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1614 |
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1615 |
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1616 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1617 bool isProtected) |
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1618 { |
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1619 boost::mutex::scoped_lock lock(mutex_); |
1310
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1620 Transaction transaction(*this); |
272
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1621 |
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1622 // Lookup for the requested resource |
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1623 int64_t id; |
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1624 ResourceType type; |
1294 | 1625 if (!db_.LookupResource(id, type, publicId) || |
272
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1626 type != ResourceType_Patient) |
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1627 { |
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1628 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1629 } |
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1630 |
1247 | 1631 db_.SetProtectedPatient(id, isProtected); |
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1632 transaction.Commit(0); |
272
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1633 |
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1634 if (isProtected) |
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1635 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1636 else |
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1637 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1638 } |
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1639 |
304 | 1640 |
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1641 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1642 const std::string& publicId) |
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1643 { |
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1644 result.clear(); |
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1645 |
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1646 boost::mutex::scoped_lock lock(mutex_); |
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1647 |
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1648 ResourceType type; |
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1649 int64_t resource; |
1294 | 1650 if (!db_.LookupResource(resource, type, publicId)) |
714
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1651 { |
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1652 throw OrthancException(ErrorCode_UnknownResource); |
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1653 } |
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1654 |
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1655 if (type == ResourceType_Instance) |
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1656 { |
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1657 // An instance cannot have a child |
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1658 throw OrthancException(ErrorCode_BadParameterType); |
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1659 } |
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1660 |
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1661 std::list<int64_t> tmp; |
1247 | 1662 db_.GetChildrenInternalId(tmp, resource); |
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1663 |
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1664 for (std::list<int64_t>::const_iterator |
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1665 it = tmp.begin(); it != tmp.end(); ++it) |
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1666 { |
1247 | 1667 result.push_back(db_.GetPublicId(*it)); |
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1668 } |
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1669 } |
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1670 |
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1671 |
304 | 1672 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1673 const std::string& publicId) | |
1674 { | |
1675 result.clear(); | |
1676 | |
1677 boost::mutex::scoped_lock lock(mutex_); | |
1678 | |
1679 ResourceType type; | |
1680 int64_t top; | |
1294 | 1681 if (!db_.LookupResource(top, type, publicId)) |
304 | 1682 { |
1683 throw OrthancException(ErrorCode_UnknownResource); | |
1684 } | |
1685 | |
1686 if (type == ResourceType_Instance) | |
1687 { | |
1688 // The resource is already an instance: Do not go down the hierarchy | |
1689 result.push_back(publicId); | |
1690 return; | |
1691 } | |
1692 | |
1693 std::stack<int64_t> toExplore; | |
1694 toExplore.push(top); | |
1695 | |
1696 std::list<int64_t> tmp; | |
1697 | |
1698 while (!toExplore.empty()) | |
1699 { | |
1700 // Get the internal ID of the current resource | |
1701 int64_t resource = toExplore.top(); | |
1702 toExplore.pop(); | |
1703 | |
1247 | 1704 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1705 { |
1247 | 1706 result.push_back(db_.GetPublicId(resource)); |
304 | 1707 } |
1708 else | |
1709 { | |
1710 // Tag all the children of this resource as to be explored | |
1247 | 1711 db_.GetChildrenInternalId(tmp, resource); |
304 | 1712 for (std::list<int64_t>::const_iterator |
656 | 1713 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1714 { |
1715 toExplore.push(*it); | |
1716 } | |
1717 } | |
1718 } | |
1719 } | |
1720 | |
306
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1721 |
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1722 void ServerIndex::SetMetadata(const std::string& publicId, |
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1723 MetadataType type, |
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1724 const std::string& value) |
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1725 { |
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1726 boost::mutex::scoped_lock lock(mutex_); |
1773
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1727 Transaction t(*this); |
306
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1728 |
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1729 ResourceType rtype; |
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1730 int64_t id; |
1294 | 1731 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1732 { |
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1733 throw OrthancException(ErrorCode_UnknownResource); |
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1734 } |
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1735 |
1247 | 1736 db_.SetMetadata(id, type, value); |
1773
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1737 |
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1738 if (IsUserMetadata(type)) |
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1739 { |
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1740 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1741 } |
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1742 |
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1743 t.Commit(0); |
306
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1744 } |
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1745 |
438 | 1746 |
1747 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1748 MetadataType type) | |
1749 { | |
1750 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1751 Transaction t(*this); |
438 | 1752 |
1753 ResourceType rtype; | |
1754 int64_t id; | |
1294 | 1755 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1756 { |
1757 throw OrthancException(ErrorCode_UnknownResource); | |
1758 } | |
1759 | |
1247 | 1760 db_.DeleteMetadata(id, type); |
1773
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1761 |
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1762 if (IsUserMetadata(type)) |
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1763 { |
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1764 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1765 } |
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1766 |
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1767 t.Commit(0); |
438 | 1768 } |
1769 | |
1770 | |
306
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1771 bool ServerIndex::LookupMetadata(std::string& target, |
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1772 const std::string& publicId, |
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1773 MetadataType type) |
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1774 { |
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1775 boost::mutex::scoped_lock lock(mutex_); |
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1776 |
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1777 ResourceType rtype; |
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1778 int64_t id; |
1294 | 1779 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1780 { |
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1781 throw OrthancException(ErrorCode_UnknownResource); |
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1782 } |
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1783 |
1247 | 1784 return db_.LookupMetadata(target, id, type); |
306
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1785 } |
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1786 |
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1787 |
739 | 1788 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1789 const std::string& publicId) |
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1790 { |
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1791 boost::mutex::scoped_lock lock(mutex_); |
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1792 |
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1793 ResourceType rtype; |
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1794 int64_t id; |
1294 | 1795 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1796 { |
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1797 throw OrthancException(ErrorCode_UnknownResource); |
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1798 } |
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1799 |
1247 | 1800 db_.ListAvailableMetadata(target, id); |
436
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1801 } |
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1802 |
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1803 |
697
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1804 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1805 const std::string& publicId, |
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1806 ResourceType expectedType) |
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1807 { |
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1808 boost::mutex::scoped_lock lock(mutex_); |
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1809 |
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1810 ResourceType type; |
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1811 int64_t id; |
1294 | 1812 if (!db_.LookupResource(id, type, publicId) || |
697
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1813 expectedType != type) |
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1814 { |
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1815 throw OrthancException(ErrorCode_UnknownResource); |
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1816 } |
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1817 |
1247 | 1818 db_.ListAvailableAttachments(target, id); |
697
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1819 } |
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1820 |
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1821 |
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1822 bool ServerIndex::LookupParent(std::string& target, |
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1823 const std::string& publicId) |
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1824 { |
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1825 boost::mutex::scoped_lock lock(mutex_); |
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1826 |
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1827 ResourceType type; |
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1828 int64_t id; |
1294 | 1829 if (!db_.LookupResource(id, type, publicId)) |
306
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1830 { |
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1831 throw OrthancException(ErrorCode_UnknownResource); |
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1832 } |
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1833 |
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1834 int64_t parentId; |
1247 | 1835 if (db_.LookupParent(parentId, id)) |
306
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1836 { |
1247 | 1837 target = db_.GetPublicId(parentId); |
306
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1838 return true; |
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1839 } |
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1840 else |
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1841 { |
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1842 return false; |
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1843 } |
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1844 } |
310 | 1845 |
1846 | |
1847 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1848 { | |
1849 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1850 Transaction transaction(*this); |
311 | 1851 |
1237 | 1852 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
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1853 transaction.Commit(0); |
311 | 1854 |
1855 return seq; | |
310 | 1856 } |
315 | 1857 |
1858 | |
1859 | |
1860 void ServerIndex::LogChange(ChangeType changeType, | |
1861 const std::string& publicId) | |
1862 { | |
1863 boost::mutex::scoped_lock lock(mutex_); | |
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1864 Transaction transaction(*this); |
315 | 1865 |
1866 int64_t id; | |
1867 ResourceType type; | |
1294 | 1868 if (!db_.LookupResource(id, type, publicId)) |
315 | 1869 { |
1870 throw OrthancException(ErrorCode_UnknownResource); | |
1871 } | |
1872 | |
1237 | 1873 LogChange(id, changeType, type, publicId); |
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1874 transaction.Commit(0); |
315 | 1875 } |
413
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1876 |
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1877 |
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1878 void ServerIndex::DeleteChanges() |
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1879 { |
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1880 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1881 db_.ClearChanges(); |
413
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1882 } |
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1883 |
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1884 void ServerIndex::DeleteExportedResources() |
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1885 { |
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1886 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1887 db_.ClearExportedResources(); |
413
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1888 } |
440
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1889 |
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1890 |
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1891 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1892 /* out */ uint64_t& uncompressedSize, |
1893 /* out */ unsigned int& countStudies, | |
1894 /* out */ unsigned int& countSeries, | |
1895 /* out */ unsigned int& countInstances, | |
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1896 /* out */ uint64_t& dicomDiskSize, |
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1897 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1898 /* in */ int64_t id, |
1899 /* in */ ResourceType type) | |
440
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1900 { |
646 | 1901 std::stack<int64_t> toExplore; |
1902 toExplore.push(id); | |
440
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1903 |
646 | 1904 countInstances = 0; |
1905 countSeries = 0; | |
1906 countStudies = 0; | |
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1907 diskSize = 0; |
646 | 1908 uncompressedSize = 0; |
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1909 dicomDiskSize = 0; |
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1910 dicomUncompressedSize = 0; |
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1911 |
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1912 while (!toExplore.empty()) |
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1913 { |
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1914 // Get the internal ID of the current resource |
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1915 int64_t resource = toExplore.top(); |
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1916 toExplore.pop(); |
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1917 |
1247 | 1918 ResourceType thisType = db_.GetResourceType(resource); |
440
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1919 |
702
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1920 std::list<FileContentType> f; |
1247 | 1921 db_.ListAvailableAttachments(f, resource); |
702
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1922 |
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1923 for (std::list<FileContentType>::const_iterator |
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1924 it = f.begin(); it != f.end(); ++it) |
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1925 { |
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1926 FileInfo attachment; |
1247 | 1927 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1928 { |
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1929 if (attachment.GetContentType() == FileContentType_Dicom) |
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1930 { |
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1931 dicomDiskSize += attachment.GetCompressedSize(); |
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1932 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1933 } |
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1934 |
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1935 diskSize += attachment.GetCompressedSize(); |
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1936 uncompressedSize += attachment.GetUncompressedSize(); |
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1937 } |
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1938 } |
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1939 |
440
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1940 if (thisType == ResourceType_Instance) |
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1941 { |
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1942 countInstances++; |
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1943 } |
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1944 else |
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1945 { |
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1946 switch (thisType) |
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1947 { |
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1948 case ResourceType_Study: |
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1949 countStudies++; |
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1950 break; |
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1951 |
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1952 case ResourceType_Series: |
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1953 countSeries++; |
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1954 break; |
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1955 |
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1956 default: |
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1957 break; |
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1958 } |
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1959 |
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1960 // Tag all the children of this resource as to be explored |
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1961 std::list<int64_t> tmp; |
1247 | 1962 db_.GetChildrenInternalId(tmp, resource); |
440
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1963 for (std::list<int64_t>::const_iterator |
656 | 1964 it = tmp.begin(); it != tmp.end(); ++it) |
440
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1965 { |
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1966 toExplore.push(*it); |
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1967 } |
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1968 } |
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1969 } |
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1970 |
646 | 1971 if (countStudies == 0) |
1972 { | |
1973 countStudies = 1; | |
1974 } | |
1975 | |
1976 if (countSeries == 0) | |
1977 { | |
1978 countSeries = 1; | |
1979 } | |
1980 } | |
1981 | |
1982 | |
1983 | |
1984 void ServerIndex::GetStatistics(Json::Value& target, | |
1985 const std::string& publicId) | |
1986 { | |
1987 boost::mutex::scoped_lock lock(mutex_); | |
1988 | |
1989 ResourceType type; | |
1990 int64_t top; | |
1294 | 1991 if (!db_.LookupResource(top, type, publicId)) |
646 | 1992 { |
1993 throw OrthancException(ErrorCode_UnknownResource); | |
1994 } | |
1995 | |
1996 uint64_t uncompressedSize; | |
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1997 uint64_t diskSize; |
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1998 uint64_t dicomUncompressedSize; |
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1999 uint64_t dicomDiskSize; |
646 | 2000 unsigned int countStudies; |
2001 unsigned int countSeries; | |
2002 unsigned int countInstances; | |
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2003 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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2004 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 2005 |
440
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2006 target = Json::objectValue; |
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2007 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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2008 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
440
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2009 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
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2010 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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2011 |
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2012 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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2013 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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2014 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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2015 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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2016 |
440
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2017 switch (type) |
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2018 { |
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2019 // Do NOT add "break" below this point! |
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2020 case ResourceType_Patient: |
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2021 target["CountStudies"] = countStudies; |
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2022 |
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2023 case ResourceType_Study: |
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2024 target["CountSeries"] = countSeries; |
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2025 |
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2026 case ResourceType_Series: |
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2027 target["CountInstances"] = countInstances; |
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2028 |
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2029 case ResourceType_Instance: |
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2030 default: |
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2031 break; |
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2032 } |
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2033 } |
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2034 |
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2035 |
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2036 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 2037 /* out */ uint64_t& uncompressedSize, |
2038 /* out */ unsigned int& countStudies, | |
2039 /* out */ unsigned int& countSeries, | |
2040 /* out */ unsigned int& countInstances, | |
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2041 /* out */ uint64_t& dicomDiskSize, |
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2042 /* out */ uint64_t& dicomUncompressedSize, |
646 | 2043 const std::string& publicId) |
2044 { | |
2045 boost::mutex::scoped_lock lock(mutex_); | |
2046 | |
2047 ResourceType type; | |
2048 int64_t top; | |
1294 | 2049 if (!db_.LookupResource(top, type, publicId)) |
646 | 2050 { |
2051 throw OrthancException(ErrorCode_UnknownResource); | |
2052 } | |
2053 | |
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2054 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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2055 countSeries, countInstances, dicomDiskSize, |
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2056 dicomUncompressedSize, top, type); |
646 | 2057 } |
2058 | |
2059 | |
2665
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2060 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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2061 unsigned int threadSleep) |
511
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2062 { |
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2063 int stableAge; |
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2064 |
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2065 { |
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2066 OrthancConfiguration::ReaderLock lock; |
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2067 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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2068 } |
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2069 |
511
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2070 if (stableAge <= 0) |
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2071 { |
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2072 stableAge = 60; |
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2073 } |
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2074 |
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2075 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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2076 |
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2077 while (!that->done_) |
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2078 { |
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2079 // Check for stable resources each few seconds |
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2080 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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2081 |
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2082 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2083 |
511
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2084 while (!that->unstableResources_.IsEmpty() && |
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2085 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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2086 { |
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2087 // This DICOM resource has not received any new instance for |
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2088 // some time. It can be considered as stable. |
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2089 |
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2090 UnstableResourcePayload payload; |
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2091 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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2092 |
513 | 2093 // Ensure that the resource is still existing before logging the change |
1247 | 2094 if (that->db_.IsExistingResource(id)) |
511
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2095 { |
1177
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2096 switch (payload.GetResourceType()) |
513 | 2097 { |
1177
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2098 case ResourceType_Patient: |
1237 | 2099 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2100 break; |
511
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2101 |
1177
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2102 case ResourceType_Study: |
1237 | 2103 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2104 break; |
511
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2105 |
1177
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2106 case ResourceType_Series: |
1237 | 2107 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2108 break; |
2109 | |
2110 default: | |
2111 throw OrthancException(ErrorCode_InternalError); | |
2112 } | |
2113 | |
2114 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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2115 } |
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2116 } |
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2117 } |
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2118 |
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2119 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2120 } |
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2121 |
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2122 |
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2123 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2124 Orthanc::ResourceType type, |
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2125 const std::string& publicId) |
511
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2126 { |
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2127 // WARNING: Before calling this method, "mutex_" must be locked. |
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2128 |
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2129 assert(type == Orthanc::ResourceType_Patient || |
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2130 type == Orthanc::ResourceType_Study || |
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2131 type == Orthanc::ResourceType_Series); |
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2132 |
1177
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2133 UnstableResourcePayload payload(type, publicId); |
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2134 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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2135 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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2136 |
1237 | 2137 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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parents:
440
diff
changeset
|
2138 } |
521 | 2139 |
2140 | |
2141 | |
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3033
diff
changeset
|
2142 void ServerIndex::LookupIdentifierExact(std::vector<std::string>& result, |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1727
diff
changeset
|
2143 ResourceType level, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1727
diff
changeset
|
2144 const DicomTag& tag, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1727
diff
changeset
|
2145 const std::string& value) |
615 | 2146 { |
1727 | 2147 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2148 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2149 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2150 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2151 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2152 |
615 | 2153 result.clear(); |
2154 | |
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3033
diff
changeset
|
2155 DicomTagConstraint c(tag, ConstraintType_Equal, value, true, true); |
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2156 |
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3033
diff
changeset
|
2157 std::vector<DatabaseConstraint> query; |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3061
diff
changeset
|
2158 query.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); |
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3033
diff
changeset
|
2159 |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2160 std::list<std::string> tmp; |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2161 |
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3033
diff
changeset
|
2162 { |
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3033
diff
changeset
|
2163 boost::mutex::scoped_lock lock(mutex_); |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2164 db_.ApplyLookupResources(tmp, NULL, query, level, 0); |
3034
54e422fe31ce
moving LookupResource to graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3033
diff
changeset
|
2165 } |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2166 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3073
diff
changeset
|
2167 CopyListToVector(result, tmp); |
615 | 2168 } |
2169 | |
2170 | |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2171 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
2929e17f8447
add attachments to resources
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697
diff
changeset
|
2172 const std::string& publicId) |
2929e17f8447
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diff
changeset
|
2173 { |
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parents:
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diff
changeset
|
2174 boost::mutex::scoped_lock lock(mutex_); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2175 |
2929e17f8447
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diff
changeset
|
2176 Transaction t(*this); |
2929e17f8447
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2177 |
2929e17f8447
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parents:
697
diff
changeset
|
2178 ResourceType resourceType; |
2929e17f8447
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diff
changeset
|
2179 int64_t resourceId; |
1294 | 2180 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
2929e17f8447
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diff
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|
2181 { |
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parents:
697
diff
changeset
|
2182 return StoreStatus_Failure; // Inexistent resource |
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diff
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|
2183 } |
2929e17f8447
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parents:
697
diff
changeset
|
2184 |
704
4789da60d655
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parents:
702
diff
changeset
|
2185 // Remove possible previous attachment |
1247 | 2186 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
2929e17f8447
add attachments to resources
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diff
changeset
|
2187 |
704
4789da60d655
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parents:
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diff
changeset
|
2188 // Locate the patient of the target resource |
4789da60d655
recycling with custom attachments
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parents:
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diff
changeset
|
2189 int64_t patientId = resourceId; |
4789da60d655
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parents:
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diff
changeset
|
2190 for (;;) |
4789da60d655
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2191 { |
4789da60d655
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parents:
702
diff
changeset
|
2192 int64_t parent; |
1247 | 2193 if (db_.LookupParent(parent, patientId)) |
704
4789da60d655
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2194 { |
4789da60d655
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diff
changeset
|
2195 // We have not reached the patient level yet |
4789da60d655
recycling with custom attachments
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parents:
702
diff
changeset
|
2196 patientId = parent; |
4789da60d655
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parents:
702
diff
changeset
|
2197 } |
4789da60d655
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parents:
702
diff
changeset
|
2198 else |
4789da60d655
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2199 { |
4789da60d655
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2200 // We have reached the patient level |
4789da60d655
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702
diff
changeset
|
2201 break; |
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parents:
702
diff
changeset
|
2202 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2203 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2204 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2205 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2206 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2207 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
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|
2208 |
1247 | 2209 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
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diff
changeset
|
2210 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2211 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2212 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2213 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2214 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2215 |
699
2929e17f8447
add attachments to resources
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parents:
697
diff
changeset
|
2216 t.Commit(attachment.GetCompressedSize()); |
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diff
changeset
|
2217 |
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697
diff
changeset
|
2218 return StoreStatus_Success; |
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diff
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|
2219 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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697
diff
changeset
|
2220 |
702
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diff
changeset
|
2221 |
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diff
changeset
|
2222 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2223 FileContentType type) |
7592a48e97e4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2224 { |
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parents:
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diff
changeset
|
2225 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2226 Transaction t(*this); |
7592a48e97e4
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diff
changeset
|
2227 |
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diff
changeset
|
2228 ResourceType rtype; |
7592a48e97e4
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diff
changeset
|
2229 int64_t id; |
1294 | 2230 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2231 { |
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diff
changeset
|
2232 throw OrthancException(ErrorCode_UnknownResource); |
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diff
changeset
|
2233 } |
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diff
changeset
|
2234 |
1247 | 2235 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
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parents:
701
diff
changeset
|
2236 |
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
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parents:
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diff
changeset
|
2237 if (IsUserContentType(type)) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2238 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2239 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2240 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2241 |
702
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diff
changeset
|
2242 t.Commit(0); |
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diff
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|
2243 } |
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changeset
|
2244 |
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|
2245 |
1002
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diff
changeset
|
2246 bool ServerIndex::GetMetadata(Json::Value& target, |
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diff
changeset
|
2247 const std::string& publicId) |
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|
2248 { |
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changeset
|
2249 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
2250 |
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diff
changeset
|
2251 target = Json::objectValue; |
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|
2252 |
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changeset
|
2253 ResourceType type; |
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diff
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|
2254 int64_t id; |
1294 | 2255 if (!db_.LookupResource(id, type, publicId)) |
1002
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|
2256 { |
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changeset
|
2257 return false; |
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|
2258 } |
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diff
changeset
|
2259 |
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diff
changeset
|
2260 std::list<MetadataType> metadata; |
1247 | 2261 db_.ListAvailableMetadata(metadata, id); |
1002
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diff
changeset
|
2262 |
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diff
changeset
|
2263 for (std::list<MetadataType>::const_iterator |
1304 | 2264 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
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diff
changeset
|
2265 { |
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diff
changeset
|
2266 std::string key = EnumerationToString(*it); |
1238 | 2267 |
2268 std::string value; | |
1247 | 2269 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2270 { |
2271 value.clear(); | |
2272 } | |
2273 | |
1002
b067017a8a5b
anonymization refactoring
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diff
changeset
|
2274 target[key] = value; |
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diff
changeset
|
2275 } |
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changeset
|
2276 |
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diff
changeset
|
2277 return true; |
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diff
changeset
|
2278 } |
1218
efece308018e
report database version in /system
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1198
diff
changeset
|
2279 |
efece308018e
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1198
diff
changeset
|
2280 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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1247
diff
changeset
|
2281 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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1247
diff
changeset
|
2282 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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1247
diff
changeset
|
2283 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2284 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2285 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2286 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2287 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2288 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2289 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2290 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2291 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2292 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2293 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2294 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2295 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2296 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2297 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2298 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2299 { |
1239 | 2300 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2301 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2302 if (LookupGlobalProperty(value, property)) |
1239 | 2303 { |
2304 return value; | |
2305 } | |
2306 else | |
2307 { | |
2308 return defaultValue; | |
2309 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2310 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2311 |
1352 | 2312 |
2313 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2314 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2315 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2316 ResourceType levelOfInterest) |
1352 | 2317 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2318 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2319 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2320 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2321 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2322 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2323 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2324 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2325 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2326 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2327 |
1352 | 2328 result.Clear(); |
2329 | |
2330 boost::mutex::scoped_lock lock(mutex_); | |
2331 | |
2332 // Lookup for the requested resource | |
2333 int64_t id; | |
2334 ResourceType type; | |
2335 if (!db_.LookupResource(id, type, publicId) || | |
2336 type != expectedType) | |
2337 { | |
2338 return false; | |
2339 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2340 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2341 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2342 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2343 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2344 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2345 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2346 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2347 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2348 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2349 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2350 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2351 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2352 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2353 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2354 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2355 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2356 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2357 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2358 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2359 } |
1352 | 2360 else |
2361 { | |
2362 db_.GetMainDicomTags(result, id); | |
2363 return true; | |
2364 } | |
2365 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2366 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2367 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2368 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2369 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2370 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2371 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2372 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2373 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2374 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2375 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2376 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2377 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2378 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2379 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2380 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2381 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2382 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2383 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2384 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2385 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2386 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2387 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2388 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2389 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2390 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2391 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2392 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2393 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2394 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2395 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2396 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2397 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2398 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2399 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2400 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2401 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2402 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2403 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2404 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2405 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2406 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2407 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2408 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2409 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2410 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2411 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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parents:
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diff
changeset
|
2412 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2413 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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parents:
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diff
changeset
|
2414 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2415 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2416 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2417 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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parents:
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diff
changeset
|
2418 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2419 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2420 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2421 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2422 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2423 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2424 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2425 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2426 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2427 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2428 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2429 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2430 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2431 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2432 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2433 #endif |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2434 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2435 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2436 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2437 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2438 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2439 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2440 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2441 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2442 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2443 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2444 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2445 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2446 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2447 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2448 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2449 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2450 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2451 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2452 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2453 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2454 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2455 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2456 |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2457 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2458 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2459 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2460 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2461 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2462 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2463 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2464 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2465 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2466 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2467 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2468 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2469 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2470 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2471 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2472 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2473 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2474 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2475 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2476 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2477 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2478 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2479 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2480 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2481 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2482 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2483 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2484 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2485 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2486 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2487 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2488 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2489 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2490 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2491 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2492 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2493 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2494 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2495 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2496 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2497 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2498 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2499 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2500 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2501 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2502 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2503 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2504 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2505 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2506 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2507 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2508 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2515 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2516 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2517 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2518 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2519 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2520 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2521 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2522 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2523 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2524 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2525 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2526 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2527 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2528 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2529 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2530 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2531 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2532 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2533 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2534 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2535 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2536 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2537 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2538 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2539 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2540 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2541 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2542 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2543 t.Commit(0); // No change in the DB size |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2544 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2545 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2546 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2547 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2548 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2549 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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3020
diff
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|
2550 |
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2551 |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2552 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2553 const DatabaseLookup& source, |
2554 ResourceType queryLevel) const | |
2555 { | |
2556 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2557 |
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2558 target.clear(); |
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new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2559 target.reserve(source.GetConstraintsCount()); |
3031 | 2560 |
3027 | 2561 for (size_t i = 0; i < source.GetConstraintsCount(); i++) |
2562 { | |
3031 | 2563 ResourceType level; |
2564 DicomTagType type; | |
3027 | 2565 |
3031 | 2566 mainDicomTagsRegistry_->LookupTag(level, type, source.GetConstraint(i).GetTag()); |
2567 | |
2568 if (type == DicomTagType_Identifier || | |
2569 type == DicomTagType_Main) | |
3027 | 2570 { |
3029
ea653ec47f31
new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2571 // Use the fact that patient-level tags are copied at the study level |
3031 | 2572 if (level == ResourceType_Patient && |
2573 queryLevel != ResourceType_Patient) | |
3027 | 2574 { |
3031 | 2575 level = ResourceType_Study; |
3027 | 2576 } |
3029
ea653ec47f31
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2577 |
3073
0e9d1731b1b0
refactoring to reuse DatabaseConstraint in separate projects
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2578 target.push_back(source.GetConstraint(i).ConvertToDatabaseConstraint(level, type)); |
3027 | 2579 } |
2580 } | |
2581 } | |
2582 | |
2583 | |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2584 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
3036
8fd203510d8b
moving LookupIdentifierQuery to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2585 std::vector<std::string>* instancesId, |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
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2586 const DatabaseLookup& lookup, |
039a9d262d64
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2587 ResourceType queryLevel, |
039a9d262d64
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2588 size_t limit) |
039a9d262d64
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2589 { |
3029
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new class: DatabaseConstraint
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2590 std::vector<DatabaseConstraint> normalized; |
3027 | 2591 NormalizeLookup(normalized, lookup, queryLevel); |
2592 | |
3075
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
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2593 std::list<std::string> resourcesList, instancesList; |
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2594 |
3027 | 2595 { |
2596 boost::mutex::scoped_lock lock(mutex_); | |
3075
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2597 |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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2598 if (instancesId == NULL) |
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2599 { |
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IDatabaseWrapper::ApplyLookupResources now returns lists
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|
2600 db_.ApplyLookupResources(resourcesList, NULL, normalized, queryLevel, limit); |
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2601 } |
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IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2602 else |
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IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2603 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2604 db_.ApplyLookupResources(resourcesList, &instancesList, normalized, queryLevel, limit); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2605 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2606 } |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2607 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2608 CopyListToVector(resourcesId, resourcesList); |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2609 |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2610 if (instancesId != NULL) |
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IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2611 { |
ead8576a02ef
IDatabaseWrapper::ApplyLookupResources now returns lists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2612 CopyListToVector(*instancesId, instancesList); |
3027 | 2613 } |
3025
039a9d262d64
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2614 } |
0 | 2615 } |