Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3029:ea653ec47f31 db-changes
new class: DatabaseConstraint
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 18 Dec 2018 18:56:55 +0100 |
parents | fd587cf51a89 |
children | 25afa7b8cb51 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
2122 | 53 #include "Search/LookupResource.h" |
0 | 54 |
55 #include <boost/lexical_cast.hpp> | |
56 #include <stdio.h> | |
57 | |
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58 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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59 |
62 | 60 namespace Orthanc |
0 | 61 { |
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62 class ServerIndex::Listener : public IDatabaseListener |
0 | 63 { |
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64 private: |
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65 struct FileToRemove |
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66 { |
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67 private: |
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68 std::string uuid_; |
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69 FileContentType type_; |
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70 |
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71 public: |
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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73 type_(info.GetContentType()) |
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74 { |
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75 } |
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76 |
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77 const std::string& GetUuid() const |
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78 { |
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79 return uuid_; |
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80 } |
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81 |
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82 FileContentType GetContentType() const |
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83 { |
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84 return type_; |
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85 } |
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86 }; |
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87 |
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88 ServerContext& context_; |
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89 bool hasRemainingLevel_; |
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90 ResourceType remainingType_; |
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91 std::string remainingPublicId_; |
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92 std::list<FileToRemove> pendingFilesToRemove_; |
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93 std::list<ServerIndexChange> pendingChanges_; |
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94 uint64_t sizeOfFilesToRemove_; |
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95 bool insideTransaction_; |
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96 |
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97 void Reset() |
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98 { |
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99 sizeOfFilesToRemove_ = 0; |
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100 hasRemainingLevel_ = false; |
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101 pendingFilesToRemove_.clear(); |
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102 pendingChanges_.clear(); |
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103 } |
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104 |
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105 public: |
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106 Listener(ServerContext& context) : context_(context), |
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107 insideTransaction_(false) |
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108 { |
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109 Reset(); |
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110 assert(ResourceType_Patient < ResourceType_Study && |
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111 ResourceType_Study < ResourceType_Series && |
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112 ResourceType_Series < ResourceType_Instance); |
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113 } |
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114 |
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115 void StartTransaction() |
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116 { |
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117 Reset(); |
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118 insideTransaction_ = true; |
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119 } |
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120 |
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121 void EndTransaction() |
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122 { |
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123 insideTransaction_ = false; |
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124 } |
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125 |
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126 uint64_t GetSizeOfFilesToRemove() |
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127 { |
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128 return sizeOfFilesToRemove_; |
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129 } |
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130 |
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131 void CommitFilesToRemove() |
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132 { |
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133 for (std::list<FileToRemove>::const_iterator |
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134 it = pendingFilesToRemove_.begin(); |
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135 it != pendingFilesToRemove_.end(); ++it) |
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136 { |
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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138 } |
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139 } |
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141 void CommitChanges() |
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142 { |
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143 for (std::list<ServerIndexChange>::const_iterator |
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144 it = pendingChanges_.begin(); |
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145 it != pendingChanges_.end(); ++it) |
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146 { |
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147 context_.SignalChange(*it); |
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148 } |
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149 } |
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150 |
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151 virtual void SignalRemainingAncestor(ResourceType parentType, |
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152 const std::string& publicId) |
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153 { |
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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155 |
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156 if (hasRemainingLevel_) |
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157 { |
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158 if (parentType < remainingType_) |
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159 { |
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160 remainingType_ = parentType; |
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161 remainingPublicId_ = publicId; |
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162 } |
1158 | 163 } |
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164 else |
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165 { |
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166 hasRemainingLevel_ = true; |
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167 remainingType_ = parentType; |
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168 remainingPublicId_ = publicId; |
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169 } |
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170 } |
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171 |
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172 virtual void SignalFileDeleted(const FileInfo& info) |
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173 { |
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174 assert(Toolbox::IsUuid(info.GetUuid())); |
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175 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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176 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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177 } |
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178 |
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179 virtual void SignalChange(const ServerIndexChange& change) |
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180 { |
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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182 << EnumerationToString(change.GetResourceType()) << ": " |
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183 << EnumerationToString(change.GetChangeType()); |
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184 |
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185 if (insideTransaction_) |
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186 { |
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187 pendingChanges_.push_back(change); |
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188 } |
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189 else |
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190 { |
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191 context_.SignalChange(change); |
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192 } |
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193 } |
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194 |
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195 bool HasRemainingLevel() const |
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196 { |
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197 return hasRemainingLevel_; |
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198 } |
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199 |
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200 ResourceType GetRemainingType() const |
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201 { |
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202 assert(HasRemainingLevel()); |
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203 return remainingType_; |
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204 } |
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205 |
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206 const std::string& GetRemainingPublicId() const |
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207 { |
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208 assert(HasRemainingLevel()); |
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209 return remainingPublicId_; |
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210 } |
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211 }; |
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213 | |
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214 class ServerIndex::Transaction |
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215 { |
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216 private: |
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217 ServerIndex& index_; |
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218 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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219 bool isCommitted_; |
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220 |
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221 public: |
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222 Transaction(ServerIndex& index) : |
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223 index_(index), |
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224 isCommitted_(false) |
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225 { |
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227 transaction_->Begin(); |
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228 |
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229 index_.listener_->StartTransaction(); |
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230 } |
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231 |
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232 ~Transaction() |
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233 { |
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234 index_.listener_->EndTransaction(); |
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235 |
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236 if (!isCommitted_) |
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237 { |
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238 transaction_->Rollback(); |
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239 } |
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240 } |
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241 |
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242 void Commit(uint64_t sizeOfAddedFiles) |
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243 { |
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244 if (!isCommitted_) |
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245 { |
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246 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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247 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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248 |
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249 transaction_->Commit(delta); |
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250 |
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251 // We can remove the files once the SQLite transaction has |
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252 // been successfully committed. Some files might have to be |
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253 // deleted because of recycling. |
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254 index_.listener_->CommitFilesToRemove(); |
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255 |
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256 // Send all the pending changes to the Orthanc plugins |
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257 index_.listener_->CommitChanges(); |
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258 |
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259 isCommitted_ = true; |
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260 } |
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261 } |
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262 }; |
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263 |
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264 |
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265 class ServerIndex::UnstableResourcePayload |
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266 { |
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267 private: |
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268 ResourceType type_; |
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269 std::string publicId_; |
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270 boost::posix_time::ptime time_; |
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271 |
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272 public: |
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273 UnstableResourcePayload() : type_(ResourceType_Instance) |
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274 { |
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275 } |
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276 |
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277 UnstableResourcePayload(Orthanc::ResourceType type, |
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278 const std::string& publicId) : |
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279 type_(type), |
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280 publicId_(publicId) |
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281 { |
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282 time_ = boost::posix_time::second_clock::local_time(); |
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283 } |
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284 |
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285 unsigned int GetAge() const |
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286 { |
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287 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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288 } |
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289 |
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290 ResourceType GetResourceType() const |
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291 { |
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292 return type_; |
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293 } |
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294 |
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295 const std::string& GetPublicId() const |
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296 { |
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297 return publicId_; |
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298 } |
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299 }; |
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300 |
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301 |
3027 | 302 class ServerIndex::MainDicomTagsRegistry : public boost::noncopyable |
303 { | |
304 private: | |
305 class TagInfo | |
306 { | |
307 private: | |
308 ResourceType level_; | |
309 DicomTagType type_; | |
310 | |
311 public: | |
312 TagInfo() | |
313 { | |
314 } | |
315 | |
316 TagInfo(ResourceType level, | |
317 DicomTagType type) : | |
318 level_(level), | |
319 type_(type) | |
320 { | |
321 } | |
322 | |
323 ResourceType GetLevel() const | |
324 { | |
325 return level_; | |
326 } | |
327 | |
328 DicomTagType GetType() const | |
329 { | |
330 return type_; | |
331 } | |
332 }; | |
333 | |
334 typedef std::map<DicomTag, TagInfo> Registry; | |
335 | |
336 | |
337 Registry registry_; | |
338 | |
339 void LoadTags(ResourceType level) | |
340 { | |
341 const DicomTag* tags = NULL; | |
342 size_t size; | |
343 | |
344 ServerToolbox::LoadIdentifiers(tags, size, level); | |
345 | |
346 for (size_t i = 0; i < size; i++) | |
347 { | |
348 if (registry_.find(tags[i]) == registry_.end()) | |
349 { | |
350 registry_[tags[i]] = TagInfo(level, DicomTagType_Identifier); | |
351 } | |
352 else | |
353 { | |
354 // These patient-level tags are copied in the study level | |
355 assert(level == ResourceType_Study && | |
356 (tags[i] == DICOM_TAG_PATIENT_ID || | |
357 tags[i] == DICOM_TAG_PATIENT_NAME || | |
358 tags[i] == DICOM_TAG_PATIENT_BIRTH_DATE)); | |
359 } | |
360 } | |
361 | |
362 DicomMap::LoadMainDicomTags(tags, size, level); | |
363 | |
364 for (size_t i = 0; i < size; i++) | |
365 { | |
366 if (registry_.find(tags[i]) == registry_.end()) | |
367 { | |
368 registry_[tags[i]] = TagInfo(level, DicomTagType_Main); | |
369 } | |
370 } | |
371 } | |
372 | |
373 public: | |
374 MainDicomTagsRegistry() | |
375 { | |
376 LoadTags(ResourceType_Patient); | |
377 LoadTags(ResourceType_Study); | |
378 LoadTags(ResourceType_Series); | |
379 LoadTags(ResourceType_Instance); | |
380 } | |
381 | |
382 void LookupTag(ResourceType& level, | |
383 DicomTagType& type, | |
384 const DicomTag& tag) const | |
385 { | |
386 Registry::const_iterator it = registry_.find(tag); | |
387 | |
388 if (it == registry_.end()) | |
389 { | |
390 // Default values | |
391 level = ResourceType_Instance; | |
392 type = DicomTagType_Generic; | |
393 } | |
394 else | |
395 { | |
396 level = it->second.GetLevel(); | |
397 type = it->second.GetType(); | |
398 } | |
399 } | |
400 }; | |
401 | |
402 | |
212 | 403 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 404 const std::string& uuid, |
202 | 405 ResourceType expectedType) |
0 | 406 { |
206
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407 boost::mutex::scoped_lock lock(mutex_); |
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408 |
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409 Transaction t(*this); |
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410 |
202 | 411 int64_t id; |
412 ResourceType type; | |
1294 | 413 if (!db_.LookupResource(id, type, uuid) || |
202 | 414 expectedType != type) |
0 | 415 { |
416 return false; | |
417 } | |
202 | 418 |
1247 | 419 db_.DeleteResource(id); |
0 | 420 |
202 | 421 if (listener_->HasRemainingLevel()) |
0 | 422 { |
202 | 423 ResourceType type = listener_->GetRemainingType(); |
424 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 425 |
426 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 427 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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428 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 429 target["RemainingAncestor"]["ID"] = uuid; |
430 } | |
431 else | |
432 { | |
433 target["RemainingAncestor"] = Json::nullValue; | |
434 } | |
435 | |
278
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436 t.Commit(0); |
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437 |
0 | 438 return true; |
439 } | |
440 | |
441 | |
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442 void ServerIndex::FlushThread(ServerIndex* that, |
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443 unsigned int threadSleep) |
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444 { |
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445 // By default, wait for 10 seconds before flushing |
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446 unsigned int sleep = 10; |
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447 |
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448 try |
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449 { |
744 | 450 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 451 std::string sleepString; |
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452 |
1247 | 453 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 454 Toolbox::IsInteger(sleepString)) |
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455 { |
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456 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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457 } |
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458 } |
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459 catch (boost::bad_lexical_cast&) |
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460 { |
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461 } |
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462 |
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463 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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464 |
511
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465 unsigned int count = 0; |
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466 |
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467 while (!that->done_) |
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468 { |
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469 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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470 count++; |
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471 if (count < sleep) |
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472 { |
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473 continue; |
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474 } |
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475 |
2217 | 476 Logging::Flush(); |
477 | |
511
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478 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 479 that->db_.FlushToDisk(); |
511
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480 count = 0; |
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481 } |
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482 |
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483 LOG(INFO) << "Stopping the database flushing thread"; |
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484 } |
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485 |
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486 |
1247 | 487 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 488 int64_t series, |
489 const DicomMap& dicomSummary) | |
490 { | |
491 try | |
492 { | |
656 | 493 const DicomValue* value; |
494 const DicomValue* value2; | |
495 | |
433 | 496 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
497 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
498 { | |
499 // Patch for series with temporal positions thanks to Will Ryder | |
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500 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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501 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 502 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
503 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
504 } | |
505 | |
506 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
507 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
508 { | |
509 // Support of Cardio-PET images | |
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510 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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511 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 512 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
513 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
514 } | |
515 | |
516 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
517 { | |
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518 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 519 } |
520 } | |
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521 catch (OrthancException&) |
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522 { |
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523 } |
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524 catch (boost::bad_lexical_cast&) |
433 | 525 { |
526 } | |
527 } | |
528 | |
529 | |
1237 | 530 |
531 | |
1238 | 532 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 533 int64_t id, |
534 MetadataType type) | |
535 { | |
1238 | 536 std::string s; |
1247 | 537 if (!db_.LookupMetadata(s, id, type)) |
1237 | 538 { |
539 return false; | |
540 } | |
541 | |
542 try | |
543 { | |
1238 | 544 result = boost::lexical_cast<int64_t>(s); |
1237 | 545 return true; |
546 } | |
547 catch (boost::bad_lexical_cast&) | |
548 { | |
549 return false; | |
550 } | |
551 } | |
552 | |
553 | |
1297 | 554 void ServerIndex::LogChange(int64_t internalId, |
555 ChangeType changeType, | |
556 ResourceType resourceType, | |
557 const std::string& publicId) | |
558 { | |
559 ServerIndexChange change(changeType, resourceType, publicId); | |
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560 |
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561 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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562 { |
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563 db_.LogChange(internalId, change); |
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564 } |
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565 |
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566 assert(listener_.get() != NULL); |
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567 listener_->SignalChange(change); |
1297 | 568 } |
569 | |
1237 | 570 |
571 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
572 { | |
573 std::string oldValue; | |
574 | |
1247 | 575 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 576 { |
577 uint64_t oldNumber; | |
578 | |
579 try | |
580 { | |
581 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 582 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 583 return oldNumber + 1; |
584 } | |
585 catch (boost::bad_lexical_cast&) | |
586 { | |
587 throw OrthancException(ErrorCode_InternalError); | |
588 } | |
589 } | |
590 else | |
591 { | |
592 // Initialize the sequence at "1" | |
1247 | 593 db_.SetGlobalProperty(property, "1"); |
1237 | 594 return 1; |
595 } | |
596 } | |
597 | |
598 | |
599 | |
1299 | 600 int64_t ServerIndex::CreateResource(const std::string& publicId, |
601 ResourceType type) | |
602 { | |
603 int64_t id = db_.CreateResource(publicId, type); | |
604 | |
605 ChangeType changeType; | |
606 switch (type) | |
607 { | |
608 case ResourceType_Patient: | |
609 changeType = ChangeType_NewPatient; | |
610 break; | |
611 | |
612 case ResourceType_Study: | |
613 changeType = ChangeType_NewStudy; | |
614 break; | |
615 | |
616 case ResourceType_Series: | |
617 changeType = ChangeType_NewSeries; | |
618 break; | |
619 | |
620 case ResourceType_Instance: | |
621 changeType = ChangeType_NewInstance; | |
622 break; | |
623 | |
624 default: | |
625 throw OrthancException(ErrorCode_InternalError); | |
626 } | |
627 | |
628 ServerIndexChange change(changeType, type, publicId); | |
629 db_.LogChange(id, change); | |
1300
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630 |
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631 assert(listener_.get() != NULL); |
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632 listener_->SignalChange(change); |
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633 |
1299 | 634 return id; |
635 } | |
636 | |
1286 | 637 |
226
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638 ServerIndex::ServerIndex(ServerContext& context, |
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639 IDatabaseWrapper& db, |
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640 unsigned int threadSleep) : |
511
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641 done_(false), |
1247 | 642 db_(db), |
269
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643 maximumStorageSize_(0), |
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644 maximumPatients_(0), |
3027 | 645 overwrite_(false), |
646 mainDicomTagsRegistry_(new MainDicomTagsRegistry) | |
186
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647 { |
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648 listener_.reset(new Listener(context)); |
1247 | 649 db_.SetListener(*listener_); |
180
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650 |
269
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651 // Initial recycling if the parameters have changed since the last |
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652 // execution of Orthanc |
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653 StandaloneRecycling(); |
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654 |
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655 if (db.HasFlushToDisk()) |
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656 { |
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657 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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658 } |
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659 |
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660 unstableResourcesMonitorThread_ = boost::thread |
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661 (UnstableResourcesMonitorThread, this, threadSleep); |
206
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662 } |
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663 |
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664 |
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665 |
206
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666 ServerIndex::~ServerIndex() |
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667 { |
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668 if (!done_) |
511
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669 { |
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670 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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671 Stop(); |
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672 } |
0 | 673 } |
674 | |
675 | |
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676 |
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677 void ServerIndex::Stop() |
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678 { |
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679 if (!done_) |
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680 { |
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681 done_ = true; |
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682 |
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683 if (db_.HasFlushToDisk() && |
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684 flushThread_.joinable()) |
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685 { |
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686 flushThread_.join(); |
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687 } |
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688 |
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689 if (unstableResourcesMonitorThread_.joinable()) |
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690 { |
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691 unstableResourcesMonitorThread_.join(); |
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692 } |
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693 } |
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694 } |
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695 |
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696 |
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697 |
2188 | 698 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
699 int64_t instance, | |
700 MetadataType metadata, | |
701 const std::string& value) | |
702 { | |
703 db_.SetMetadata(instance, metadata, value); | |
704 instanceMetadata[metadata] = value; | |
705 } | |
706 | |
707 | |
708 | |
1006
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709 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 710 DicomInstanceToStore& instanceToStore, |
711 const Attachments& attachments) | |
0 | 712 { |
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713 boost::mutex::scoped_lock lock(mutex_); |
0 | 714 |
1822 | 715 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
716 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
717 | |
1006
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718 instanceMetadata.clear(); |
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719 |
0 | 720 try |
721 { | |
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722 Transaction t(*this); |
0 | 723 |
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724 // Check whether this instance is already stored |
0 | 725 { |
432 | 726 ResourceType type; |
727 int64_t tmp; | |
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728 if (db_.LookupResource(tmp, type, instanceToStore.GetHasher().HashInstance())) |
432 | 729 { |
730 assert(type == ResourceType_Instance); | |
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731 |
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732 if (overwrite_) |
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733 { |
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734 // Overwrite the old instance |
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735 LOG(INFO) << "Overwriting instance: " << instanceToStore.GetHasher().HashInstance(); |
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736 db_.DeleteResource(tmp); |
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737 } |
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738 else |
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739 { |
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740 // Do nothing if the instance already exists |
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741 db_.GetAllMetadata(instanceMetadata, tmp); |
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742 return StoreStatus_AlreadyStored; |
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743 } |
432 | 744 } |
0 | 745 } |
746 | |
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747 // Ensure there is enough room in the storage for the new instance |
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748 uint64_t instanceSize = 0; |
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749 for (Attachments::const_iterator it = attachments.begin(); |
656 | 750 it != attachments.end(); ++it) |
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751 { |
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752 instanceSize += it->GetCompressedSize(); |
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753 } |
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754 |
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755 Recycle(instanceSize, instanceToStore.GetHasher().HashPatient()); |
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756 |
202 | 757 // Create the instance |
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758 int64_t instance = CreateResource(instanceToStore.GetHasher().HashInstance(), ResourceType_Instance); |
2120 | 759 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 760 |
432 | 761 // Detect up to which level the patient/study/series/instance |
762 // hierarchy must be created | |
763 int64_t patient = -1, study = -1, series = -1; | |
764 bool isNewPatient = false; | |
765 bool isNewStudy = false; | |
766 bool isNewSeries = false; | |
767 | |
0 | 768 { |
432 | 769 ResourceType dummy; |
770 | |
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771 if (db_.LookupResource(series, dummy, instanceToStore.GetHasher().HashSeries())) |
432 | 772 { |
773 assert(dummy == ResourceType_Series); | |
774 // The patient, the study and the series already exist | |
775 | |
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776 bool ok = (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()) && |
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777 db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())); |
432 | 778 assert(ok); |
779 } | |
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780 else if (db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())) |
432 | 781 { |
782 assert(dummy == ResourceType_Study); | |
783 | |
784 // New series: The patient and the study already exist | |
785 isNewSeries = true; | |
786 | |
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787 bool ok = db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()); |
432 | 788 assert(ok); |
789 } | |
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790 else if (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient())) |
432 | 791 { |
792 assert(dummy == ResourceType_Patient); | |
793 | |
794 // New study and series: The patient already exist | |
795 isNewStudy = true; | |
796 isNewSeries = true; | |
797 } | |
798 else | |
799 { | |
800 // New patient, study and series: Nothing exists | |
801 isNewPatient = true; | |
802 isNewStudy = true; | |
803 isNewSeries = true; | |
804 } | |
805 } | |
806 | |
807 // Create the series if needed | |
808 if (isNewSeries) | |
809 { | |
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810 series = CreateResource(instanceToStore.GetHasher().HashSeries(), ResourceType_Series); |
2120 | 811 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 812 } |
202 | 813 |
432 | 814 // Create the study if needed |
815 if (isNewStudy) | |
816 { | |
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817 study = CreateResource(instanceToStore.GetHasher().HashStudy(), ResourceType_Study); |
2120 | 818 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 819 } |
820 | |
821 // Create the patient if needed | |
822 if (isNewPatient) | |
823 { | |
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824 patient = CreateResource(instanceToStore.GetHasher().HashPatient(), ResourceType_Patient); |
2120 | 825 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 826 } |
202 | 827 |
432 | 828 // Create the parent-to-child links |
1247 | 829 db_.AttachChild(series, instance); |
432 | 830 |
831 if (isNewSeries) | |
832 { | |
1247 | 833 db_.AttachChild(study, series); |
0 | 834 } |
432 | 835 |
836 if (isNewStudy) | |
0 | 837 { |
1247 | 838 db_.AttachChild(patient, study); |
0 | 839 } |
840 | |
432 | 841 // Sanity checks |
842 assert(patient != -1); | |
843 assert(study != -1); | |
844 assert(series != -1); | |
845 assert(instance != -1); | |
846 | |
202 | 847 // Attach the files to the newly created instance |
232
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848 for (Attachments::const_iterator it = attachments.begin(); |
656 | 849 it != attachments.end(); ++it) |
232
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850 { |
1247 | 851 db_.AddAttachment(instance, *it); |
232
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852 } |
202 | 853 |
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854 // Attach the user-specified metadata |
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855 for (MetadataMap::const_iterator |
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856 it = metadata.begin(); it != metadata.end(); ++it) |
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857 { |
1006
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858 switch (it->first.first) |
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859 { |
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860 case ResourceType_Patient: |
1247 | 861 db_.SetMetadata(patient, it->first.second, it->second); |
1006
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862 break; |
1002
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863 |
1006
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864 case ResourceType_Study: |
1247 | 865 db_.SetMetadata(study, it->first.second, it->second); |
1006
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866 break; |
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867 |
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868 case ResourceType_Series: |
1247 | 869 db_.SetMetadata(series, it->first.second, it->second); |
1006
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870 break; |
1002
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871 |
1006
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872 case ResourceType_Instance: |
2188 | 873 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
1006
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874 break; |
1002
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875 |
1006
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876 default: |
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877 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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878 } |
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879 } |
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|
880 |
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DicomInstanceToStore
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881 // Attach the auto-computed metadata for the patient/study/series levels |
2475
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diff
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|
882 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
1247 | 883 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
884 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
885 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
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|
886 |
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887 // Attach the auto-computed metadata for the instance level, |
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DicomInstanceToStore
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diff
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|
888 // reflecting these additions into the input metadata map |
2188 | 889 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
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890 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, |
2664
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diff
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891 instanceToStore.GetOrigin().GetRemoteAetC()); |
2189
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diff
changeset
|
892 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
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diff
changeset
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893 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
2726
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|
894 |
1823
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|
895 { |
2189
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diff
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|
896 std::string s; |
2726
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|
897 |
2189
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diff
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|
898 if (instanceToStore.LookupTransferSyntax(s)) |
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|
899 { |
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900 // New in Orthanc 1.2.0 |
2189
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diff
changeset
|
901 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
c4b3259c8bce
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|
902 } |
2726
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|
903 |
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diff
changeset
|
904 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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905 { |
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changeset
|
906 // New in Orthanc 1.4.0 |
46061a91c88a
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diff
changeset
|
907 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteIp, s); |
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|
908 } |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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changeset
|
909 |
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diff
changeset
|
910 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
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changeset
|
911 { |
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diff
changeset
|
912 // New in Orthanc 1.4.0 |
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diff
changeset
|
913 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_CalledAet, s); |
46061a91c88a
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|
914 } |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
915 |
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diff
changeset
|
916 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
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|
917 { |
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|
918 // New in Orthanc 1.4.0 |
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changeset
|
919 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_HttpUsername, s); |
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|
920 } |
1823
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diff
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|
921 } |
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|
922 |
202 | 923 const DicomValue* value; |
2208
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diff
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|
924 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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|
925 !value->IsNull() && |
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|
926 !value->IsBinary()) |
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927 { |
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changeset
|
928 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
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929 } |
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changeset
|
930 |
202 | 931 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
932 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 933 { |
1737
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diff
changeset
|
934 if (!value->IsNull() && |
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diff
changeset
|
935 !value->IsBinary()) |
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diff
changeset
|
936 { |
2188 | 937 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
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changeset
|
938 } |
0 | 939 } |
940 | |
1004
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changeset
|
941 // Check whether the series of this new instance is now completed |
202 | 942 if (isNewSeries) |
943 { | |
1247 | 944 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 945 } |
946 | |
205
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947 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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948 if (seriesStatus == SeriesStatus_Complete) |
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949 { |
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changeset
|
950 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
205
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|
951 } |
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logging of completed series
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|
952 |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
953 // Mark the parent resources of this instance as unstable |
2898
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DicomInstanceToStore::GetHasher()
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diff
changeset
|
954 MarkAsUnstable(series, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
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DicomInstanceToStore::GetHasher()
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changeset
|
955 MarkAsUnstable(study, ResourceType_Study, instanceToStore.GetHasher().HashStudy()); |
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DicomInstanceToStore::GetHasher()
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956 MarkAsUnstable(patient, ResourceType_Patient, instanceToStore.GetHasher().HashPatient()); |
511
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957 |
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958 t.Commit(instanceSize); |
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959 |
0 | 960 return StoreStatus_Success; |
961 } | |
62 | 962 catch (OrthancException& e) |
0 | 963 { |
1247 | 964 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 965 } |
966 | |
967 return StoreStatus_Failure; | |
968 } | |
969 | |
970 | |
238 | 971 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 972 { |
206
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973 boost::mutex::scoped_lock lock(mutex_); |
238 | 974 target = Json::objectValue; |
0 | 975 |
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976 uint64_t cs = db_.GetTotalCompressedSize(); |
1247 | 977 uint64_t us = db_.GetTotalUncompressedSize(); |
440
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978 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 979 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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980 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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981 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 982 |
1247 | 983 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
984 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
985 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
986 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 987 } |
988 | |
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989 |
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990 |
585 | 991 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 992 { |
993 // Get the expected number of instances in this series (from the metadata) | |
1238 | 994 int64_t expected; |
995 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 996 { |
997 return SeriesStatus_Unknown; | |
998 } | |
999 | |
1000 // Loop over the instances of this series | |
1001 std::list<int64_t> children; | |
1247 | 1002 db_.GetChildrenInternalId(children, id); |
199 | 1003 |
1238 | 1004 std::set<int64_t> instances; |
199 | 1005 for (std::list<int64_t>::const_iterator |
656 | 1006 it = children.begin(); it != children.end(); ++it) |
199 | 1007 { |
1008 // Get the index of this instance in the series | |
1238 | 1009 int64_t index; |
1010 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 1011 { |
1012 return SeriesStatus_Unknown; | |
1013 } | |
1014 | |
656 | 1015 if (!(index > 0 && index <= expected)) |
199 | 1016 { |
1017 // Out-of-range instance index | |
1018 return SeriesStatus_Inconsistent; | |
1019 } | |
1020 | |
1021 if (instances.find(index) != instances.end()) | |
1022 { | |
1023 // Twice the same instance index | |
1024 return SeriesStatus_Inconsistent; | |
1025 } | |
1026 | |
1027 instances.insert(index); | |
1028 } | |
1029 | |
1238 | 1030 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 1031 { |
1032 return SeriesStatus_Complete; | |
1033 } | |
1034 else | |
1035 { | |
1036 return SeriesStatus_Missing; | |
1037 } | |
1038 } | |
1039 | |
1040 | |
202 | 1041 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
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1042 int64_t resourceId, |
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1043 ResourceType resourceType) |
198
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1044 { |
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1045 DicomMap tags; |
1247 | 1046 db_.GetMainDicomTags(tags, resourceId); |
1676
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1047 |
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1048 if (resourceType == ResourceType_Study) |
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1049 { |
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|
1050 DicomMap t1, t2; |
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|
1051 tags.ExtractStudyInformation(t1); |
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1052 tags.ExtractPatientInformation(t2); |
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1053 |
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1054 target["MainDicomTags"] = Json::objectValue; |
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1055 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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1056 |
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1057 target["PatientMainDicomTags"] = Json::objectValue; |
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1058 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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1059 } |
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1060 else |
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1061 { |
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1062 target["MainDicomTags"] = Json::objectValue; |
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1063 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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1064 } |
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1065 } |
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1066 |
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1067 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 1068 const std::string& publicId, |
1069 ResourceType expectedType) | |
198
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1070 { |
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1071 result = Json::objectValue; |
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1072 |
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1073 boost::mutex::scoped_lock lock(mutex_); |
199 | 1074 |
198
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1075 // Lookup for the requested resource |
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1076 int64_t id; |
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1077 ResourceType type; |
1294 | 1078 if (!db_.LookupResource(id, type, publicId) || |
199 | 1079 type != expectedType) |
198
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1080 { |
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1081 return false; |
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1082 } |
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1083 |
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1084 // Find the parent resource (if it exists) |
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1085 if (type != ResourceType_Patient) |
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1086 { |
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1087 int64_t parentId; |
1247 | 1088 if (!db_.LookupParent(parentId, id)) |
198
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1089 { |
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1090 throw OrthancException(ErrorCode_InternalError); |
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1091 } |
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1092 |
1247 | 1093 std::string parent = db_.GetPublicId(parentId); |
198
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1094 |
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1095 switch (type) |
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1096 { |
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1097 case ResourceType_Study: |
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1098 result["ParentPatient"] = parent; |
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1099 break; |
198
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1100 |
269
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1101 case ResourceType_Series: |
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1102 result["ParentStudy"] = parent; |
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1103 break; |
198
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1104 |
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1105 case ResourceType_Instance: |
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1106 result["ParentSeries"] = parent; |
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1107 break; |
198
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1108 |
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1109 default: |
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1110 throw OrthancException(ErrorCode_InternalError); |
198
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1111 } |
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1112 } |
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1113 |
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1114 // List the children resources |
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1115 std::list<std::string> children; |
1247 | 1116 db_.GetChildrenPublicId(children, id); |
198
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1117 |
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1118 if (type != ResourceType_Instance) |
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1119 { |
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1120 Json::Value c = Json::arrayValue; |
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1121 |
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1122 for (std::list<std::string>::const_iterator |
656 | 1123 it = children.begin(); it != children.end(); ++it) |
198
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1124 { |
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1125 c.append(*it); |
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1126 } |
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1127 |
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1128 switch (type) |
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1129 { |
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1130 case ResourceType_Patient: |
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1131 result["Studies"] = c; |
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1132 break; |
198
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1133 |
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1134 case ResourceType_Study: |
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1135 result["Series"] = c; |
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1136 break; |
198
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1137 |
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1138 case ResourceType_Series: |
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1139 result["Instances"] = c; |
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1140 break; |
198
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1141 |
269
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1142 default: |
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1143 throw OrthancException(ErrorCode_InternalError); |
198
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1144 } |
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1145 } |
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1146 |
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1147 // Set the resource type |
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1148 switch (type) |
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1149 { |
269
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1150 case ResourceType_Patient: |
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diff
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1151 result["Type"] = "Patient"; |
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diff
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|
1152 break; |
198
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|
1153 |
269
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1154 case ResourceType_Study: |
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diff
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|
1155 result["Type"] = "Study"; |
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diff
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|
1156 break; |
199 | 1157 |
269
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diff
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|
1158 case ResourceType_Series: |
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1159 { |
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1160 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
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433
diff
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|
1161 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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diff
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|
1162 |
1238 | 1163 int64_t i; |
1237 | 1164 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1165 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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diff
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|
1166 else |
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diff
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|
1167 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
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refactoring of read operations
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diff
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|
1168 |
269
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diff
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|
1169 break; |
200
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199
diff
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|
1170 } |
9c58b2b03cf0
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diff
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|
1171 |
269
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|
1172 case ResourceType_Instance: |
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|
1173 { |
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|
1174 result["Type"] = "Instance"; |
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|
1175 |
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diff
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|
1176 FileInfo attachment; |
1247 | 1177 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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|
1178 { |
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diff
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|
1179 throw OrthancException(ErrorCode_InternalError); |
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diff
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|
1180 } |
200
9c58b2b03cf0
refactoring of read operations
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diff
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|
1181 |
269
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diff
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|
1182 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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diff
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|
1183 result["FileUuid"] = attachment.GetUuid(); |
200
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refactoring of read operations
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parents:
199
diff
changeset
|
1184 |
1238 | 1185 int64_t i; |
1237 | 1186 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1187 result["IndexInSeries"] = static_cast<int>(i); |
269
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diff
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|
1188 else |
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|
1189 result["IndexInSeries"] = Json::nullValue; |
198
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diff
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|
1190 |
269
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|
1191 break; |
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|
1192 } |
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|
1193 |
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diff
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|
1194 default: |
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diff
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|
1195 throw OrthancException(ErrorCode_InternalError); |
198
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|
1196 } |
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|
1197 |
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diff
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|
1198 // Record the remaining information |
663cc6c46d0a
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197
diff
changeset
|
1199 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1200 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
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|
1201 |
315 | 1202 std::string tmp; |
1203 | |
1247 | 1204 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1205 { |
315 | 1206 result["AnonymizedFrom"] = tmp; |
1236 | 1207 } |
315 | 1208 |
1247 | 1209 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1210 { |
315 | 1211 result["ModifiedFrom"] = tmp; |
1236 | 1212 } |
315 | 1213 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1214 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1215 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1216 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1217 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1218 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1219 |
1247 | 1220 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1221 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1222 result["LastUpdate"] = tmp; |
1236 | 1223 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1224 } |
3b735fdf320b
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440
diff
changeset
|
1225 |
198
663cc6c46d0a
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diff
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|
1226 return true; |
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diff
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|
1227 } |
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|
1228 |
0 | 1229 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1230 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1231 const std::string& instanceUuid, |
233 | 1232 FileContentType contentType) |
0 | 1233 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1234 boost::mutex::scoped_lock lock(mutex_); |
0 | 1235 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1236 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1237 ResourceType type; |
1294 | 1238 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
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191
diff
changeset
|
1239 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1240 throw OrthancException(ErrorCode_UnknownResource); |
192
c56dc32266e0
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191
diff
changeset
|
1241 } |
193
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192
diff
changeset
|
1242 |
1247 | 1243 if (db_.LookupAttachment(attachment, id, contentType)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1244 { |
233 | 1245 assert(attachment.GetContentType() == contentType); |
232
5368bbe813cf
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231
diff
changeset
|
1246 return true; |
5368bbe813cf
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231
diff
changeset
|
1247 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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231
diff
changeset
|
1248 else |
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231
diff
changeset
|
1249 { |
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231
diff
changeset
|
1250 return false; |
5368bbe813cf
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231
diff
changeset
|
1251 } |
192
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diff
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|
1252 } |
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191
diff
changeset
|
1253 |
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191
diff
changeset
|
1254 |
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diff
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|
1255 |
1354 | 1256 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1257 ResourceType resourceType) |
0 | 1258 { |
1357 | 1259 boost::mutex::scoped_lock lock(mutex_); |
1260 db_.GetAllPublicIds(target, resourceType); | |
0 | 1261 } |
1262 | |
1263 | |
1509
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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1486
diff
changeset
|
1264 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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diff
changeset
|
1265 ResourceType resourceType, |
0586ed8897f1
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diff
changeset
|
1266 size_t since, |
0586ed8897f1
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diff
changeset
|
1267 size_t limit) |
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limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1268 { |
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limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1269 if (limit == 0) |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1270 { |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1271 target.clear(); |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1272 return; |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1273 } |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1274 |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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1486
diff
changeset
|
1275 boost::mutex::scoped_lock lock(mutex_); |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1276 db_.GetAllPublicIds(target, resourceType, since, limit); |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1277 } |
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1278 |
0586ed8897f1
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diff
changeset
|
1279 |
1244 | 1280 template <typename T> |
1281 static void FormatLog(Json::Value& target, | |
1282 const std::list<T>& log, | |
1283 const std::string& name, | |
1284 bool done, | |
1285 int64_t since) | |
1240 | 1286 { |
1287 Json::Value items = Json::arrayValue; | |
1244 | 1288 for (typename std::list<T>::const_iterator |
1304 | 1289 it = log.begin(); it != log.end(); ++it) |
1240 | 1290 { |
1291 Json::Value item; | |
1292 it->Format(item); | |
1293 items.append(item); | |
1294 } | |
1295 | |
1296 target = Json::objectValue; | |
1244 | 1297 target[name] = items; |
1240 | 1298 target["Done"] = done; |
1299 | |
1305 | 1300 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1301 target["Last"] = static_cast<int>(last); |
1302 } | |
1303 | |
1304 | |
1247 | 1305 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1306 int64_t since, |
0 | 1307 unsigned int maxResults) |
1308 { | |
1240 | 1309 std::list<ServerIndexChange> changes; |
1310 bool done; | |
1311 | |
1312 { | |
1313 boost::mutex::scoped_lock lock(mutex_); | |
2717
d33659c28c6b
fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1314 |
d33659c28c6b
fix missing transaction
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diff
changeset
|
1315 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
d33659c28c6b
fix missing transaction
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2668
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1316 // "GetLastChange()" involves calls to "GetPublicId()" |
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1317 Transaction transaction(*this); |
1247 | 1318 db_.GetChanges(changes, done, since, maxResults); |
2717
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1319 transaction.Commit(0); |
1240 | 1320 } |
1321 | |
1244 | 1322 FormatLog(target, changes, "Changes", done, since); |
237
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1323 } |
0 | 1324 |
1240 | 1325 |
1247 | 1326 void ServerIndex::GetLastChange(Json::Value& target) |
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1327 { |
1240 | 1328 std::list<ServerIndexChange> changes; |
1329 | |
1330 { | |
1331 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1332 |
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1333 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1334 // "GetLastChange()" involves calls to "GetPublicId()" |
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1335 Transaction transaction(*this); |
1247 | 1336 db_.GetLastChange(changes); |
2717
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1337 transaction.Commit(0); |
1240 | 1338 } |
1339 | |
1244 | 1340 FormatLog(target, changes, "Changes", true, 0); |
0 | 1341 } |
231 | 1342 |
1240 | 1343 |
231 | 1344 void ServerIndex::LogExportedResource(const std::string& publicId, |
1345 const std::string& remoteModality) | |
1346 { | |
1347 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1348 Transaction transaction(*this); |
231 | 1349 |
1350 int64_t id; | |
1351 ResourceType type; | |
1294 | 1352 if (!db_.LookupResource(id, type, publicId)) |
231 | 1353 { |
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1354 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1355 } |
1356 | |
1357 std::string patientId; | |
1358 std::string studyInstanceUid; | |
1359 std::string seriesInstanceUid; | |
1360 std::string sopInstanceUid; | |
1361 | |
1362 int64_t currentId = id; | |
1363 ResourceType currentType = type; | |
1364 | |
1365 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1366 bool done = false; | |
1367 while (!done) | |
1368 { | |
1369 DicomMap map; | |
1247 | 1370 db_.GetMainDicomTags(map, currentId); |
231 | 1371 |
1372 switch (currentType) | |
1373 { | |
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1374 case ResourceType_Patient: |
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1375 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1376 { |
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1377 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1378 } |
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1379 done = true; |
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1380 break; |
231 | 1381 |
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1382 case ResourceType_Study: |
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1383 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1384 { |
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1385 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1386 } |
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1387 currentType = ResourceType_Patient; |
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1388 break; |
231 | 1389 |
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1390 case ResourceType_Series: |
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1391 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1392 { |
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1393 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1394 } |
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1395 currentType = ResourceType_Study; |
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1396 break; |
231 | 1397 |
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1398 case ResourceType_Instance: |
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1399 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1400 { |
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1401 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1402 } |
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1403 currentType = ResourceType_Series; |
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1404 break; |
231 | 1405 |
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1406 default: |
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1407 throw OrthancException(ErrorCode_InternalError); |
231 | 1408 } |
1409 | |
1410 // If we have not reached the Patient level, find the parent of | |
1411 // the current resource | |
1412 if (!done) | |
1413 { | |
1247 | 1414 bool ok = db_.LookupParent(currentId, currentId); |
375
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1415 assert(ok); |
231 | 1416 } |
1417 } | |
1418 | |
1246 | 1419 ExportedResource resource(-1, |
1420 type, | |
1421 publicId, | |
1422 remoteModality, | |
2475
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|
1423 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1424 patientId, |
1425 studyInstanceUid, | |
1426 seriesInstanceUid, | |
1427 sopInstanceUid); | |
1310
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1428 |
1247 | 1429 db_.LogExportedResource(resource); |
1310
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|
1430 transaction.Commit(0); |
231 | 1431 } |
1432 | |
1433 | |
1247 | 1434 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1435 int64_t since, |
1436 unsigned int maxResults) | |
1437 { | |
1244 | 1438 std::list<ExportedResource> exported; |
1439 bool done; | |
1440 | |
1441 { | |
1442 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1443 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1444 } |
1445 | |
1446 FormatLog(target, exported, "Exports", done, since); | |
231 | 1447 } |
237
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1448 |
1244 | 1449 |
1247 | 1450 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1451 { |
1244 | 1452 std::list<ExportedResource> exported; |
1453 | |
1454 { | |
1455 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1456 db_.GetLastExportedResource(exported); |
1244 | 1457 } |
1458 | |
1459 FormatLog(target, exported, "Exports", true, 0); | |
237
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1460 } |
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1461 |
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1462 |
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1463 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1464 { |
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1465 if (maximumStorageSize_ != 0) |
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1466 { |
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1467 assert(maximumStorageSize_ >= instanceSize); |
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1468 |
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1469 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
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1470 { |
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1471 return true; |
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1472 } |
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1473 } |
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1474 |
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1475 if (maximumPatients_ != 0) |
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1476 { |
1247 | 1477 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1478 if (patientCount > maximumPatients_) |
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1479 { |
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1480 return true; |
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1481 } |
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1482 } |
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1483 |
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1484 return false; |
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1485 } |
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1486 |
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1487 |
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1488 void ServerIndex::Recycle(uint64_t instanceSize, |
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1489 const std::string& newPatientId) |
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1490 { |
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1491 if (!IsRecyclingNeeded(instanceSize)) |
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1492 { |
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1493 return; |
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1494 } |
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1495 |
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1496 // Check whether other DICOM instances from this patient are |
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1497 // already stored |
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1498 int64_t patientToAvoid; |
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1499 ResourceType type; |
1294 | 1500 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1501 |
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1502 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1503 { |
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1504 throw OrthancException(ErrorCode_InternalError); |
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1505 } |
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1506 |
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1507 // Iteratively select patient to remove until there is enough |
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1508 // space in the DICOM store |
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1509 int64_t patientToRecycle; |
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1510 while (true) |
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1511 { |
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1512 // If other instances of this patient are already in the store, |
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1513 // we must avoid to recycle them |
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1514 bool ok = hasPatientToAvoid ? |
1247 | 1515 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1516 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1517 |
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1518 if (!ok) |
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1519 { |
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1520 throw OrthancException(ErrorCode_FullStorage); |
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1521 } |
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1522 |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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|
1523 VLOG(1) << "Recycling one patient"; |
1247 | 1524 db_.DeleteResource(patientToRecycle); |
269
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1525 |
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1526 if (!IsRecyclingNeeded(instanceSize)) |
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1527 { |
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1528 // OK, we're done |
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1529 break; |
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1530 } |
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1531 } |
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1532 } |
269
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1533 |
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1534 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1535 { |
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1536 boost::mutex::scoped_lock lock(mutex_); |
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1537 maximumPatients_ = count; |
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1538 |
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1539 if (count == 0) |
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1540 { |
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1541 LOG(WARNING) << "No limit on the number of stored patients"; |
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1542 } |
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1543 else |
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|
1544 { |
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1545 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1546 } |
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1547 |
269
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1548 StandaloneRecycling(); |
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1549 } |
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1550 |
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1551 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1552 { |
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1553 boost::mutex::scoped_lock lock(mutex_); |
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1554 maximumStorageSize_ = size; |
270
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1555 |
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1556 if (size == 0) |
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|
1557 { |
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|
1558 LOG(WARNING) << "No limit on the size of the storage area"; |
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|
1559 } |
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|
1560 else |
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diff
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|
1561 { |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1562 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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|
1563 } |
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|
1564 |
269
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|
1565 StandaloneRecycling(); |
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1566 } |
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1567 |
2825
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
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|
1568 void ServerIndex::SetOverwriteInstances(bool overwrite) |
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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2726
diff
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|
1569 { |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
changeset
|
1570 boost::mutex::scoped_lock lock(mutex_); |
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
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|
1571 overwrite_ = overwrite; |
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2726
diff
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|
1572 } |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
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|
1573 |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
1574 |
272
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|
1575 void ServerIndex::StandaloneRecycling() |
269
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|
1576 { |
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1577 // WARNING: No mutex here, do not include this as a public method |
278
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|
1578 Transaction t(*this); |
269
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|
1579 Recycle(0, ""); |
278
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|
1580 t.Commit(0); |
269
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1581 } |
272
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diff
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|
1582 |
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diff
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|
1583 |
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|
1584 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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|
1585 { |
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|
1586 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
1587 |
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|
1588 // Lookup for the requested resource |
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|
1589 int64_t id; |
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diff
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|
1590 ResourceType type; |
1294 | 1591 if (!db_.LookupResource(id, type, publicId) || |
272
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|
1592 type != ResourceType_Patient) |
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diff
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|
1593 { |
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|
1594 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
1595 } |
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1596 |
1247 | 1597 return db_.IsProtectedPatient(id); |
272
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|
1598 } |
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diff
changeset
|
1599 |
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diff
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|
1600 |
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|
1601 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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|
1602 bool isProtected) |
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|
1603 { |
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|
1604 boost::mutex::scoped_lock lock(mutex_); |
1310
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|
1605 Transaction transaction(*this); |
272
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1606 |
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1607 // Lookup for the requested resource |
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1608 int64_t id; |
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1609 ResourceType type; |
1294 | 1610 if (!db_.LookupResource(id, type, publicId) || |
272
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1611 type != ResourceType_Patient) |
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1612 { |
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|
1613 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1614 } |
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1615 |
1247 | 1616 db_.SetProtectedPatient(id, isProtected); |
1310
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1617 transaction.Commit(0); |
272
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1618 |
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1619 if (isProtected) |
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1620 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1621 else |
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1622 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1623 } |
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1624 |
304 | 1625 |
714
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|
1626 void ServerIndex::GetChildren(std::list<std::string>& result, |
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|
1627 const std::string& publicId) |
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|
1628 { |
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|
1629 result.clear(); |
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|
1630 |
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changeset
|
1631 boost::mutex::scoped_lock lock(mutex_); |
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|
1632 |
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changeset
|
1633 ResourceType type; |
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changeset
|
1634 int64_t resource; |
1294 | 1635 if (!db_.LookupResource(resource, type, publicId)) |
714
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changeset
|
1636 { |
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changeset
|
1637 throw OrthancException(ErrorCode_UnknownResource); |
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|
1638 } |
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changeset
|
1639 |
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changeset
|
1640 if (type == ResourceType_Instance) |
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|
1641 { |
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1642 // An instance cannot have a child |
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1643 throw OrthancException(ErrorCode_BadParameterType); |
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1644 } |
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1645 |
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1646 std::list<int64_t> tmp; |
1247 | 1647 db_.GetChildrenInternalId(tmp, resource); |
714
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1648 |
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1649 for (std::list<int64_t>::const_iterator |
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1650 it = tmp.begin(); it != tmp.end(); ++it) |
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1651 { |
1247 | 1652 result.push_back(db_.GetPublicId(*it)); |
714
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1653 } |
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1654 } |
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1655 |
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1656 |
304 | 1657 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1658 const std::string& publicId) | |
1659 { | |
1660 result.clear(); | |
1661 | |
1662 boost::mutex::scoped_lock lock(mutex_); | |
1663 | |
1664 ResourceType type; | |
1665 int64_t top; | |
1294 | 1666 if (!db_.LookupResource(top, type, publicId)) |
304 | 1667 { |
1668 throw OrthancException(ErrorCode_UnknownResource); | |
1669 } | |
1670 | |
1671 if (type == ResourceType_Instance) | |
1672 { | |
1673 // The resource is already an instance: Do not go down the hierarchy | |
1674 result.push_back(publicId); | |
1675 return; | |
1676 } | |
1677 | |
1678 std::stack<int64_t> toExplore; | |
1679 toExplore.push(top); | |
1680 | |
1681 std::list<int64_t> tmp; | |
1682 | |
1683 while (!toExplore.empty()) | |
1684 { | |
1685 // Get the internal ID of the current resource | |
1686 int64_t resource = toExplore.top(); | |
1687 toExplore.pop(); | |
1688 | |
1247 | 1689 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1690 { |
1247 | 1691 result.push_back(db_.GetPublicId(resource)); |
304 | 1692 } |
1693 else | |
1694 { | |
1695 // Tag all the children of this resource as to be explored | |
1247 | 1696 db_.GetChildrenInternalId(tmp, resource); |
304 | 1697 for (std::list<int64_t>::const_iterator |
656 | 1698 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1699 { |
1700 toExplore.push(*it); | |
1701 } | |
1702 } | |
1703 } | |
1704 } | |
1705 | |
306
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1706 |
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1707 void ServerIndex::SetMetadata(const std::string& publicId, |
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1708 MetadataType type, |
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1709 const std::string& value) |
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1710 { |
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1711 boost::mutex::scoped_lock lock(mutex_); |
1773
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1712 Transaction t(*this); |
306
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1713 |
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1714 ResourceType rtype; |
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1715 int64_t id; |
1294 | 1716 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1717 { |
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1718 throw OrthancException(ErrorCode_UnknownResource); |
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1719 } |
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1720 |
1247 | 1721 db_.SetMetadata(id, type, value); |
1773
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1722 |
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1723 if (IsUserMetadata(type)) |
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1724 { |
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1725 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1726 } |
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1727 |
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1728 t.Commit(0); |
306
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1729 } |
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1730 |
438 | 1731 |
1732 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1733 MetadataType type) | |
1734 { | |
1735 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1736 Transaction t(*this); |
438 | 1737 |
1738 ResourceType rtype; | |
1739 int64_t id; | |
1294 | 1740 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1741 { |
1742 throw OrthancException(ErrorCode_UnknownResource); | |
1743 } | |
1744 | |
1247 | 1745 db_.DeleteMetadata(id, type); |
1773
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1746 |
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1747 if (IsUserMetadata(type)) |
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1748 { |
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1749 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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|
1750 } |
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|
1751 |
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|
1752 t.Commit(0); |
438 | 1753 } |
1754 | |
1755 | |
306
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1756 bool ServerIndex::LookupMetadata(std::string& target, |
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1757 const std::string& publicId, |
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1758 MetadataType type) |
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1759 { |
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1760 boost::mutex::scoped_lock lock(mutex_); |
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1761 |
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1762 ResourceType rtype; |
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1763 int64_t id; |
1294 | 1764 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1765 { |
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1766 throw OrthancException(ErrorCode_UnknownResource); |
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1767 } |
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1768 |
1247 | 1769 return db_.LookupMetadata(target, id, type); |
306
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1770 } |
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1771 |
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1772 |
739 | 1773 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1774 const std::string& publicId) |
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|
1775 { |
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1776 boost::mutex::scoped_lock lock(mutex_); |
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1777 |
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|
1778 ResourceType rtype; |
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|
1779 int64_t id; |
1294 | 1780 if (!db_.LookupResource(id, rtype, publicId)) |
436
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diff
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|
1781 { |
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|
1782 throw OrthancException(ErrorCode_UnknownResource); |
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diff
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|
1783 } |
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diff
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|
1784 |
1247 | 1785 db_.ListAvailableMetadata(target, id); |
436
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|
1786 } |
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|
1787 |
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|
1788 |
697
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|
1789 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1790 const std::string& publicId, |
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|
1791 ResourceType expectedType) |
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|
1792 { |
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|
1793 boost::mutex::scoped_lock lock(mutex_); |
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|
1794 |
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1795 ResourceType type; |
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|
1796 int64_t id; |
1294 | 1797 if (!db_.LookupResource(id, type, publicId) || |
697
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1798 expectedType != type) |
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1799 { |
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1800 throw OrthancException(ErrorCode_UnknownResource); |
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1801 } |
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1802 |
1247 | 1803 db_.ListAvailableAttachments(target, id); |
697
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1804 } |
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1805 |
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1806 |
306
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1807 bool ServerIndex::LookupParent(std::string& target, |
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1808 const std::string& publicId) |
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1809 { |
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1810 boost::mutex::scoped_lock lock(mutex_); |
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1811 |
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1812 ResourceType type; |
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1813 int64_t id; |
1294 | 1814 if (!db_.LookupResource(id, type, publicId)) |
306
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1815 { |
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1816 throw OrthancException(ErrorCode_UnknownResource); |
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1817 } |
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1818 |
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1819 int64_t parentId; |
1247 | 1820 if (db_.LookupParent(parentId, id)) |
306
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1821 { |
1247 | 1822 target = db_.GetPublicId(parentId); |
306
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1823 return true; |
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1824 } |
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1825 else |
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1826 { |
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1827 return false; |
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1828 } |
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1829 } |
310 | 1830 |
1831 | |
1832 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1833 { | |
1834 boost::mutex::scoped_lock lock(mutex_); | |
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1835 Transaction transaction(*this); |
311 | 1836 |
1237 | 1837 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
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1838 transaction.Commit(0); |
311 | 1839 |
1840 return seq; | |
310 | 1841 } |
315 | 1842 |
1843 | |
1844 | |
1845 void ServerIndex::LogChange(ChangeType changeType, | |
1846 const std::string& publicId) | |
1847 { | |
1848 boost::mutex::scoped_lock lock(mutex_); | |
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1849 Transaction transaction(*this); |
315 | 1850 |
1851 int64_t id; | |
1852 ResourceType type; | |
1294 | 1853 if (!db_.LookupResource(id, type, publicId)) |
315 | 1854 { |
1855 throw OrthancException(ErrorCode_UnknownResource); | |
1856 } | |
1857 | |
1237 | 1858 LogChange(id, changeType, type, publicId); |
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1859 transaction.Commit(0); |
315 | 1860 } |
413
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1861 |
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1862 |
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1863 void ServerIndex::DeleteChanges() |
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1864 { |
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1865 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1866 db_.ClearChanges(); |
413
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1867 } |
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1868 |
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1869 void ServerIndex::DeleteExportedResources() |
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1870 { |
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1871 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1872 db_.ClearExportedResources(); |
413
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1873 } |
440
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1874 |
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1875 |
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1876 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1877 /* out */ uint64_t& uncompressedSize, |
1878 /* out */ unsigned int& countStudies, | |
1879 /* out */ unsigned int& countSeries, | |
1880 /* out */ unsigned int& countInstances, | |
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1881 /* out */ uint64_t& dicomDiskSize, |
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1882 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1883 /* in */ int64_t id, |
1884 /* in */ ResourceType type) | |
440
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1885 { |
646 | 1886 std::stack<int64_t> toExplore; |
1887 toExplore.push(id); | |
440
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1888 |
646 | 1889 countInstances = 0; |
1890 countSeries = 0; | |
1891 countStudies = 0; | |
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1892 diskSize = 0; |
646 | 1893 uncompressedSize = 0; |
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1894 dicomDiskSize = 0; |
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1895 dicomUncompressedSize = 0; |
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1896 |
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1897 while (!toExplore.empty()) |
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1898 { |
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1899 // Get the internal ID of the current resource |
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1900 int64_t resource = toExplore.top(); |
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1901 toExplore.pop(); |
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1902 |
1247 | 1903 ResourceType thisType = db_.GetResourceType(resource); |
440
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1904 |
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1905 std::list<FileContentType> f; |
1247 | 1906 db_.ListAvailableAttachments(f, resource); |
702
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1907 |
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1908 for (std::list<FileContentType>::const_iterator |
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1909 it = f.begin(); it != f.end(); ++it) |
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1910 { |
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1911 FileInfo attachment; |
1247 | 1912 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1913 { |
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1914 if (attachment.GetContentType() == FileContentType_Dicom) |
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1915 { |
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1916 dicomDiskSize += attachment.GetCompressedSize(); |
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1917 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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1918 } |
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1919 |
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1920 diskSize += attachment.GetCompressedSize(); |
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1921 uncompressedSize += attachment.GetUncompressedSize(); |
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1922 } |
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1923 } |
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1924 |
440
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1925 if (thisType == ResourceType_Instance) |
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1926 { |
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1927 countInstances++; |
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1928 } |
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1929 else |
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1930 { |
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1931 switch (thisType) |
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1932 { |
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1933 case ResourceType_Study: |
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1934 countStudies++; |
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1935 break; |
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1936 |
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1937 case ResourceType_Series: |
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1938 countSeries++; |
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1939 break; |
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1940 |
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1941 default: |
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1942 break; |
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1943 } |
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1944 |
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1945 // Tag all the children of this resource as to be explored |
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1946 std::list<int64_t> tmp; |
1247 | 1947 db_.GetChildrenInternalId(tmp, resource); |
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1948 for (std::list<int64_t>::const_iterator |
656 | 1949 it = tmp.begin(); it != tmp.end(); ++it) |
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1950 { |
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1951 toExplore.push(*it); |
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1952 } |
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1953 } |
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1954 } |
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1955 |
646 | 1956 if (countStudies == 0) |
1957 { | |
1958 countStudies = 1; | |
1959 } | |
1960 | |
1961 if (countSeries == 0) | |
1962 { | |
1963 countSeries = 1; | |
1964 } | |
1965 } | |
1966 | |
1967 | |
1968 | |
1969 void ServerIndex::GetStatistics(Json::Value& target, | |
1970 const std::string& publicId) | |
1971 { | |
1972 boost::mutex::scoped_lock lock(mutex_); | |
1973 | |
1974 ResourceType type; | |
1975 int64_t top; | |
1294 | 1976 if (!db_.LookupResource(top, type, publicId)) |
646 | 1977 { |
1978 throw OrthancException(ErrorCode_UnknownResource); | |
1979 } | |
1980 | |
1981 uint64_t uncompressedSize; | |
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1982 uint64_t diskSize; |
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1983 uint64_t dicomUncompressedSize; |
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1984 uint64_t dicomDiskSize; |
646 | 1985 unsigned int countStudies; |
1986 unsigned int countSeries; | |
1987 unsigned int countInstances; | |
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1988 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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1989 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 1990 |
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1991 target = Json::objectValue; |
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1992 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1993 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
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1994 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1995 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
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1996 |
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1997 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1998 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1999 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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2000 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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2001 |
440
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2002 switch (type) |
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2003 { |
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2004 // Do NOT add "break" below this point! |
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2005 case ResourceType_Patient: |
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2006 target["CountStudies"] = countStudies; |
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2007 |
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2008 case ResourceType_Study: |
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2009 target["CountSeries"] = countSeries; |
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2010 |
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2011 case ResourceType_Series: |
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2012 target["CountInstances"] = countInstances; |
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2013 |
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2014 case ResourceType_Instance: |
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2015 default: |
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2016 break; |
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2017 } |
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2018 } |
511
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2019 |
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2020 |
2987
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2021 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 2022 /* out */ uint64_t& uncompressedSize, |
2023 /* out */ unsigned int& countStudies, | |
2024 /* out */ unsigned int& countSeries, | |
2025 /* out */ unsigned int& countInstances, | |
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2026 /* out */ uint64_t& dicomDiskSize, |
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2027 /* out */ uint64_t& dicomUncompressedSize, |
646 | 2028 const std::string& publicId) |
2029 { | |
2030 boost::mutex::scoped_lock lock(mutex_); | |
2031 | |
2032 ResourceType type; | |
2033 int64_t top; | |
1294 | 2034 if (!db_.LookupResource(top, type, publicId)) |
646 | 2035 { |
2036 throw OrthancException(ErrorCode_UnknownResource); | |
2037 } | |
2038 | |
2987
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2039 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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2040 countSeries, countInstances, dicomDiskSize, |
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2041 dicomUncompressedSize, top, type); |
646 | 2042 } |
2043 | |
2044 | |
2665
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2045 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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2046 unsigned int threadSleep) |
511
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2047 { |
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2048 int stableAge; |
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2049 |
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2050 { |
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2051 OrthancConfiguration::ReaderLock lock; |
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2052 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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2053 } |
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2054 |
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2055 if (stableAge <= 0) |
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2056 { |
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2057 stableAge = 60; |
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2058 } |
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2059 |
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2060 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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2061 |
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2062 while (!that->done_) |
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2063 { |
2665
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2064 // Check for stable resources each few seconds |
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2065 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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2066 |
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2067 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 2068 |
511
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2069 while (!that->unstableResources_.IsEmpty() && |
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2070 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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2071 { |
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2072 // This DICOM resource has not received any new instance for |
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2073 // some time. It can be considered as stable. |
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2074 |
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2075 UnstableResourcePayload payload; |
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2076 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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2077 |
513 | 2078 // Ensure that the resource is still existing before logging the change |
1247 | 2079 if (that->db_.IsExistingResource(id)) |
511
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2080 { |
1177
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2081 switch (payload.GetResourceType()) |
513 | 2082 { |
1177
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2083 case ResourceType_Patient: |
1237 | 2084 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 2085 break; |
511
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2086 |
1177
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2087 case ResourceType_Study: |
1237 | 2088 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 2089 break; |
511
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2090 |
1177
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2091 case ResourceType_Series: |
1237 | 2092 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 2093 break; |
2094 | |
2095 default: | |
2096 throw OrthancException(ErrorCode_InternalError); | |
2097 } | |
2098 | |
2099 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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2100 } |
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2101 } |
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2102 } |
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2103 |
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2104 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2105 } |
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2106 |
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2107 |
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2108 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2109 Orthanc::ResourceType type, |
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2110 const std::string& publicId) |
511
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2111 { |
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2112 // WARNING: Before calling this method, "mutex_" must be locked. |
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2113 |
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2114 assert(type == Orthanc::ResourceType_Patient || |
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2115 type == Orthanc::ResourceType_Study || |
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2116 type == Orthanc::ResourceType_Series); |
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2117 |
1177
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2118 UnstableResourcePayload payload(type, publicId); |
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2119 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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2120 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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2121 |
1237 | 2122 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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2123 } |
521 | 2124 |
2125 | |
2126 | |
1728
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2127 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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2128 ResourceType level, |
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2129 const DicomTag& tag, |
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2130 const std::string& value) |
615 | 2131 { |
1727 | 2132 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2133 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2134 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2135 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2136 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2137 |
615 | 2138 result.clear(); |
2139 | |
2140 boost::mutex::scoped_lock lock(mutex_); | |
2141 | |
1746 | 2142 LookupIdentifierQuery query(level); |
2143 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
2144 query.Apply(result, db_); | |
615 | 2145 } |
2146 | |
2147 | |
699
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|
2148 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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2149 const std::string& publicId) |
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2150 { |
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2151 boost::mutex::scoped_lock lock(mutex_); |
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2152 |
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2153 Transaction t(*this); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2154 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2155 ResourceType resourceType; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2156 int64_t resourceId; |
1294 | 2157 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2158 { |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2159 return StoreStatus_Failure; // Inexistent resource |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2160 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2161 |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2162 // Remove possible previous attachment |
1247 | 2163 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2164 |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2165 // Locate the patient of the target resource |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2166 int64_t patientId = resourceId; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2167 for (;;) |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2168 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2169 int64_t parent; |
1247 | 2170 if (db_.LookupParent(parent, patientId)) |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2171 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2172 // We have not reached the patient level yet |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2173 patientId = parent; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2174 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2175 else |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2176 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2177 // We have reached the patient level |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2178 break; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2179 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2180 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2181 |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2182 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2183 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2184 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2185 |
1247 | 2186 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2187 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2188 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2189 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2190 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2191 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2192 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2193 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2194 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2195 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2196 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2197 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2198 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2199 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2200 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2201 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2202 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2203 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2204 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2205 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2206 int64_t id; |
1294 | 2207 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2208 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2209 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2210 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2211 |
1247 | 2212 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2213 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2214 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2215 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2216 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2217 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2218 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2219 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2220 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2221 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2222 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2223 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2224 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2225 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2226 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2227 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2228 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2229 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2230 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2231 int64_t id; |
1294 | 2232 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2233 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2234 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2235 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2236 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2237 std::list<MetadataType> metadata; |
1247 | 2238 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2239 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2240 for (std::list<MetadataType>::const_iterator |
1304 | 2241 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2242 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2243 std::string key = EnumerationToString(*it); |
1238 | 2244 |
2245 std::string value; | |
1247 | 2246 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2247 { |
2248 value.clear(); | |
2249 } | |
2250 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2251 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2252 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2253 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2254 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2255 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2256 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2257 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2258 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2259 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2260 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2261 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2262 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2263 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2264 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2265 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2266 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2267 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2268 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2269 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2270 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2271 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2272 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2273 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2274 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2275 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2276 { |
1239 | 2277 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2278 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2279 if (LookupGlobalProperty(value, property)) |
1239 | 2280 { |
2281 return value; | |
2282 } | |
2283 else | |
2284 { | |
2285 return defaultValue; | |
2286 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2287 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2288 |
1352 | 2289 |
2290 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2291 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2292 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2293 ResourceType levelOfInterest) |
1352 | 2294 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2295 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2296 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2297 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2298 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2299 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2300 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2301 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2302 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2303 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2304 |
1352 | 2305 result.Clear(); |
2306 | |
2307 boost::mutex::scoped_lock lock(mutex_); | |
2308 | |
2309 // Lookup for the requested resource | |
2310 int64_t id; | |
2311 ResourceType type; | |
2312 if (!db_.LookupResource(id, type, publicId) || | |
2313 type != expectedType) | |
2314 { | |
2315 return false; | |
2316 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2317 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2318 if (type == ResourceType_Study) |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2319 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2320 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2321 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2322 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2323 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2324 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2325 case ResourceType_Patient: |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2326 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2327 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2328 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2329 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2330 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2331 return true; |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2332 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2333 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2334 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2335 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2336 } |
1352 | 2337 else |
2338 { | |
2339 db_.GetMainDicomTags(result, id); | |
2340 return true; | |
2341 } | |
2342 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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1509
diff
changeset
|
2343 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2344 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2345 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2346 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2347 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2348 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2349 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2350 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2351 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2352 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2353 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2354 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2355 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2356 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2357 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2358 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2359 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2360 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2361 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2362 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2363 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2364 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2365 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2366 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2367 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2368 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2369 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2370 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2371 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2372 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2373 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2374 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2375 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2376 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2377 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2378 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2379 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2380 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2381 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2382 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2383 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2384 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2385 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2386 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2387 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2388 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2389 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2390 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2391 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2392 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2393 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2394 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2395 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
|
2396 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2397 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2398 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2399 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2400 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2401 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
|
2402 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
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2403 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2404 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2405 it = patientTags.begin(); it != patientTags.end(); ++it) |
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DicomMap::ExtractMainDicomTags()
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changeset
|
2406 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2407 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
|
2408 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
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2409 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
|
2410 #endif |
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DicomMap::ExtractMainDicomTags()
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changeset
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2411 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2412 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
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2413 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
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2414 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2415 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
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2416 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2417 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2418 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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changeset
|
2419 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2420 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2421 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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1509
diff
changeset
|
2422 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2423 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2424 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2425 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2426 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2427 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2428 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2429 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2430 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2431 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2432 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2433 |
1753 | 2434 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2435 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1754
diff
changeset
|
2436 const ::Orthanc::LookupResource& lookup) |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2437 { |
1753 | 2438 boost::mutex::scoped_lock lock(mutex_); |
2439 | |
2440 std::list<int64_t> tmp; | |
2441 lookup.FindCandidates(tmp, db_); | |
2442 | |
2443 resources.resize(tmp.size()); | |
2444 instances.resize(tmp.size()); | |
2445 | |
2446 size_t pos = 0; | |
2447 for (std::list<int64_t>::const_iterator | |
2448 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2449 { | |
1754 | 2450 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2451 | |
1753 | 2452 int64_t instance; |
2120 | 2453 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2454 { |
2455 throw OrthancException(ErrorCode_InternalError); | |
2456 } | |
2457 | |
2458 resources[pos] = db_.GetPublicId(*it); | |
2459 instances[pos] = db_.GetPublicId(instance); | |
2460 } | |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2461 } |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2462 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2463 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2464 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2465 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2466 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2467 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2468 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2469 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2470 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2471 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2472 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2473 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2474 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2475 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2476 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2477 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2478 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2479 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2480 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2481 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2482 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2483 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2484 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2485 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2486 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2487 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2488 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2489 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2490 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2491 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2492 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2493 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2494 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2495 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2496 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2497 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2498 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2499 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2500 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2501 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2502 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2503 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2504 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2505 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2506 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2507 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2508 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2509 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2510 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2511 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2512 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2513 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2514 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2515 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2516 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2517 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2518 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2519 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2520 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2521 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2522 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2523 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2524 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2525 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2526 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2527 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2528 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2529 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2530 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2531 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2532 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2533 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2534 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2535 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2536 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2537 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2538 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2539 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2540 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2541 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2542 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2543 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2544 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2545 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2546 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2547 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2548 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
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2549 |
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2550 t.Commit(0); // No change in the DB size |
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2551 } |
e3fd5bc429a2
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Sebastien Jodogne <s.jodogne@gmail.com>
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2552 catch (OrthancException& e) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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2553 { |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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2554 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
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URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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2555 } |
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2556 } |
3025
039a9d262d64
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2557 |
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2558 |
3029
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Sebastien Jodogne <s.jodogne@gmail.com>
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2559 |
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2560 void ServerIndex::NormalizeLookup(std::vector<DatabaseConstraint>& target, |
3027 | 2561 const DatabaseLookup& source, |
2562 ResourceType queryLevel) const | |
2563 { | |
2564 assert(mainDicomTagsRegistry_.get() != NULL); | |
3029
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2565 |
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2566 target.clear(); |
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2567 target.reserve(source.GetConstraintsCount()); |
3027 | 2568 |
2569 for (size_t i = 0; i < source.GetConstraintsCount(); i++) | |
2570 { | |
2571 const DicomTagConstraint& constraint = source.GetConstraint(i); | |
2572 | |
2573 ResourceType tagLevel; | |
2574 DicomTagType tagType; | |
2575 mainDicomTagsRegistry_->LookupTag(tagLevel, tagType, constraint.GetTag()); | |
2576 | |
2577 if (IsResourceLevelAboveOrEqual(tagLevel, queryLevel) && | |
2578 (tagType == DicomTagType_Identifier || | |
2579 tagType == DicomTagType_Main)) | |
2580 { | |
3029
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2581 // Use the fact that patient-level tags are copied at the study level |
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2582 if (queryLevel != ResourceType_Patient && |
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2583 tagLevel == ResourceType_Patient) |
3027 | 2584 { |
3029
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2585 tagLevel = ResourceType_Study; |
3027 | 2586 } |
3029
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2587 |
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2588 DatabaseConstraint c(constraint, tagLevel, tagType); |
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2589 |
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2590 // Avoid universal constraints |
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2591 if (!(c.GetConstraintType() == ConstraintType_Equal && |
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2592 c.GetSingleValue() == "") && |
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2593 !(c.GetConstraintType() == ConstraintType_Wildcard && |
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2594 c.GetSingleValue() == "*")) |
3027 | 2595 { |
3029
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2596 target.push_back(c); |
3027 | 2597 } |
2598 } | |
2599 } | |
2600 } | |
2601 | |
2602 | |
3025
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2603 void ServerIndex::ApplyLookupPatients(std::vector<std::string>& patientsId, |
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2604 std::vector<std::string>& instancesId, |
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2605 const DatabaseLookup& lookup, |
039a9d262d64
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2606 size_t limit) |
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2607 { |
3029
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2608 std::vector<DatabaseConstraint> normalized; |
3027 | 2609 NormalizeLookup(normalized, lookup, ResourceType_Patient); |
2610 | |
2611 { | |
2612 boost::mutex::scoped_lock lock(mutex_); | |
2613 db_.ApplyLookupPatients(patientsId, instancesId, normalized, limit); | |
2614 } | |
3025
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2615 } |
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2616 |
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2617 |
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2618 void ServerIndex::ApplyLookupResources(std::vector<std::string>& resourcesId, |
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2619 std::vector<std::string>& instancesId, |
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2620 const DatabaseLookup& lookup, |
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2621 ResourceType queryLevel, |
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2622 size_t limit) |
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2623 { |
3029
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2624 std::vector<DatabaseConstraint> normalized; |
3027 | 2625 NormalizeLookup(normalized, lookup, queryLevel); |
2626 | |
2627 { | |
2628 boost::mutex::scoped_lock lock(mutex_); | |
2629 db_.ApplyLookupResources(resourcesId, instancesId, normalized, queryLevel, limit); | |
2630 } | |
3025
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2631 } |
0 | 2632 } |