Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2554:ea63d9f90377
/tags now returns multiple numerical values in a \ separated string
| author | am@osimis.io |
|---|---|
| date | Wed, 02 May 2018 11:50:47 +0200 |
| parents | 8cc3ca64a534 |
| children | 3372c5255333 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
| 0 | 6 * |
| 7 * This program is free software: you can redistribute it and/or | |
| 8 * modify it under the terms of the GNU General Public License as | |
| 9 * published by the Free Software Foundation, either version 3 of the | |
| 10 * License, or (at your option) any later version. | |
| 136 | 11 * |
| 12 * In addition, as a special exception, the copyright holders of this | |
| 13 * program give permission to link the code of its release with the | |
| 14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 15 * that use the same license as the "OpenSSL" library), and distribute | |
| 16 * the linked executables. You must obey the GNU General Public License | |
| 17 * in all respects for all of the code used other than "OpenSSL". If you | |
| 18 * modify file(s) with this exception, you may extend this exception to | |
| 19 * your version of the file(s), but you are not obligated to do so. If | |
| 20 * you do not wish to do so, delete this exception statement from your | |
| 21 * version. If you delete this exception statement from all source files | |
| 22 * in the program, then also delete it here. | |
| 0 | 23 * |
| 24 * This program is distributed in the hope that it will be useful, but | |
| 25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 27 * General Public License for more details. | |
| 28 * | |
| 29 * You should have received a copy of the GNU General Public License | |
| 30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 31 **/ | |
| 32 | |
| 33 | |
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34 #include "PrecompiledHeadersServer.h" |
| 0 | 35 #include "ServerIndex.h" |
| 36 | |
| 6 | 37 #ifndef NOMINMAX |
| 2 | 38 #define NOMINMAX |
| 6 | 39 #endif |
| 40 | |
| 1198 | 41 #include "ServerIndexChange.h" |
| 8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancInitialization.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
| 0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
| 0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
| 1822 | 52 #include "DicomInstanceToStore.h" |
| 2122 | 53 #include "Search/LookupResource.h" |
| 0 | 54 |
| 55 #include <boost/lexical_cast.hpp> | |
| 56 #include <stdio.h> | |
| 57 | |
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58 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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59 |
| 62 | 60 namespace Orthanc |
| 0 | 61 { |
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62 class ServerIndex::Listener : public IDatabaseListener |
| 0 | 63 { |
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64 private: |
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65 struct FileToRemove |
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66 { |
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67 private: |
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68 std::string uuid_; |
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69 FileContentType type_; |
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70 |
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71 public: |
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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73 type_(info.GetContentType()) |
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74 { |
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75 } |
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76 |
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77 const std::string& GetUuid() const |
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78 { |
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79 return uuid_; |
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80 } |
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81 |
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82 FileContentType GetContentType() const |
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83 { |
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84 return type_; |
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85 } |
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86 }; |
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87 |
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88 ServerContext& context_; |
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89 bool hasRemainingLevel_; |
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90 ResourceType remainingType_; |
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91 std::string remainingPublicId_; |
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92 std::list<FileToRemove> pendingFilesToRemove_; |
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93 std::list<ServerIndexChange> pendingChanges_; |
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94 uint64_t sizeOfFilesToRemove_; |
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95 bool insideTransaction_; |
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96 |
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97 void Reset() |
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98 { |
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99 sizeOfFilesToRemove_ = 0; |
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100 hasRemainingLevel_ = false; |
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101 pendingFilesToRemove_.clear(); |
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102 pendingChanges_.clear(); |
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103 } |
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104 |
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105 public: |
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106 Listener(ServerContext& context) : context_(context), |
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107 insideTransaction_(false) |
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108 { |
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109 Reset(); |
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110 assert(ResourceType_Patient < ResourceType_Study && |
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111 ResourceType_Study < ResourceType_Series && |
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112 ResourceType_Series < ResourceType_Instance); |
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113 } |
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114 |
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115 void StartTransaction() |
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116 { |
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117 Reset(); |
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118 insideTransaction_ = true; |
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119 } |
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120 |
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121 void EndTransaction() |
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122 { |
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123 insideTransaction_ = false; |
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124 } |
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125 |
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126 uint64_t GetSizeOfFilesToRemove() |
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127 { |
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128 return sizeOfFilesToRemove_; |
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129 } |
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130 |
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131 void CommitFilesToRemove() |
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132 { |
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133 for (std::list<FileToRemove>::const_iterator |
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134 it = pendingFilesToRemove_.begin(); |
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135 it != pendingFilesToRemove_.end(); ++it) |
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136 { |
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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138 } |
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139 } |
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140 |
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141 void CommitChanges() |
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142 { |
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143 for (std::list<ServerIndexChange>::const_iterator |
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144 it = pendingChanges_.begin(); |
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145 it != pendingChanges_.end(); ++it) |
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146 { |
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147 context_.SignalChange(*it); |
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148 } |
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149 } |
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150 |
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151 virtual void SignalRemainingAncestor(ResourceType parentType, |
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152 const std::string& publicId) |
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153 { |
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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155 |
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156 if (hasRemainingLevel_) |
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157 { |
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158 if (parentType < remainingType_) |
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159 { |
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160 remainingType_ = parentType; |
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161 remainingPublicId_ = publicId; |
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162 } |
| 1158 | 163 } |
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164 else |
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165 { |
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166 hasRemainingLevel_ = true; |
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167 remainingType_ = parentType; |
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168 remainingPublicId_ = publicId; |
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169 } |
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170 } |
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171 |
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172 virtual void SignalFileDeleted(const FileInfo& info) |
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173 { |
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174 assert(Toolbox::IsUuid(info.GetUuid())); |
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175 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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176 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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177 } |
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178 |
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179 virtual void SignalChange(const ServerIndexChange& change) |
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180 { |
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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182 << EnumerationToString(change.GetResourceType()) << ": " |
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183 << EnumerationToString(change.GetChangeType()); |
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184 |
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185 if (insideTransaction_) |
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186 { |
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187 pendingChanges_.push_back(change); |
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188 } |
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189 else |
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190 { |
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191 context_.SignalChange(change); |
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192 } |
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193 } |
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194 |
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195 bool HasRemainingLevel() const |
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196 { |
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197 return hasRemainingLevel_; |
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198 } |
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199 |
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200 ResourceType GetRemainingType() const |
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201 { |
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202 assert(HasRemainingLevel()); |
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203 return remainingType_; |
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204 } |
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205 |
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206 const std::string& GetRemainingPublicId() const |
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207 { |
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208 assert(HasRemainingLevel()); |
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209 return remainingPublicId_; |
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210 } |
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211 }; |
| 0 | 212 |
| 213 | |
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214 class ServerIndex::Transaction |
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215 { |
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216 private: |
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217 ServerIndex& index_; |
| 1235 | 218 std::auto_ptr<SQLite::ITransaction> transaction_; |
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219 bool isCommitted_; |
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220 |
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221 public: |
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222 Transaction(ServerIndex& index) : |
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223 index_(index), |
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224 isCommitted_(false) |
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225 { |
| 1247 | 226 transaction_.reset(index_.db_.StartTransaction()); |
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227 transaction_->Begin(); |
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228 |
| 1270 | 229 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
| 230 | |
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231 index_.listener_->StartTransaction(); |
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232 } |
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233 |
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234 ~Transaction() |
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235 { |
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236 index_.listener_->EndTransaction(); |
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237 |
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238 if (!isCommitted_) |
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239 { |
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240 transaction_->Rollback(); |
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241 } |
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242 } |
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243 |
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244 void Commit(uint64_t sizeOfAddedFiles) |
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245 { |
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246 if (!isCommitted_) |
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247 { |
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248 transaction_->Commit(); |
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249 |
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250 // We can remove the files once the SQLite transaction has |
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251 // been successfully committed. Some files might have to be |
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252 // deleted because of recycling. |
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253 index_.listener_->CommitFilesToRemove(); |
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254 |
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255 index_.currentStorageSize_ += sizeOfAddedFiles; |
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256 |
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257 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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258 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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259 |
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260 // Send all the pending changes to the Orthanc plugins |
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261 index_.listener_->CommitChanges(); |
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262 |
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263 isCommitted_ = true; |
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264 } |
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265 } |
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266 }; |
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267 |
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268 |
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269 class ServerIndex::UnstableResourcePayload |
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270 { |
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271 private: |
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272 ResourceType type_; |
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273 std::string publicId_; |
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274 boost::posix_time::ptime time_; |
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275 |
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276 public: |
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277 UnstableResourcePayload() : type_(ResourceType_Instance) |
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278 { |
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279 } |
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280 |
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281 UnstableResourcePayload(Orthanc::ResourceType type, |
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282 const std::string& publicId) : |
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283 type_(type), |
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284 publicId_(publicId) |
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285 { |
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286 time_ = boost::posix_time::second_clock::local_time(); |
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287 } |
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288 |
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289 unsigned int GetAge() const |
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290 { |
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291 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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292 } |
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293 |
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294 ResourceType GetResourceType() const |
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295 { |
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296 return type_; |
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297 } |
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298 |
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299 const std::string& GetPublicId() const |
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300 { |
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301 return publicId_; |
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302 } |
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303 }; |
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304 |
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305 |
| 212 | 306 bool ServerIndex::DeleteResource(Json::Value& target, |
| 0 | 307 const std::string& uuid, |
| 202 | 308 ResourceType expectedType) |
| 0 | 309 { |
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310 boost::mutex::scoped_lock lock(mutex_); |
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311 |
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312 Transaction t(*this); |
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313 |
| 202 | 314 int64_t id; |
| 315 ResourceType type; | |
| 1294 | 316 if (!db_.LookupResource(id, type, uuid) || |
| 202 | 317 expectedType != type) |
| 0 | 318 { |
| 319 return false; | |
| 320 } | |
| 202 | 321 |
| 1247 | 322 db_.DeleteResource(id); |
| 0 | 323 |
| 202 | 324 if (listener_->HasRemainingLevel()) |
| 0 | 325 { |
| 202 | 326 ResourceType type = listener_->GetRemainingType(); |
| 327 const std::string& uuid = listener_->GetRemainingPublicId(); | |
| 0 | 328 |
| 329 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
| 204 | 330 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
|
434
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331 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
| 0 | 332 target["RemainingAncestor"]["ID"] = uuid; |
| 333 } | |
| 334 else | |
| 335 { | |
| 336 target["RemainingAncestor"] = Json::nullValue; | |
| 337 } | |
| 338 | |
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339 t.Commit(0); |
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340 |
| 0 | 341 return true; |
| 342 } | |
| 343 | |
| 344 | |
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345 void ServerIndex::FlushThread(ServerIndex* that) |
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346 { |
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347 // By default, wait for 10 seconds before flushing |
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348 unsigned int sleep = 10; |
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349 |
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350 try |
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351 { |
| 744 | 352 boost::mutex::scoped_lock lock(that->mutex_); |
| 1239 | 353 std::string sleepString; |
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354 |
| 1247 | 355 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
| 1239 | 356 Toolbox::IsInteger(sleepString)) |
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357 { |
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358 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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359 } |
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360 } |
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361 catch (boost::bad_lexical_cast&) |
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362 { |
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363 } |
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364 |
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365 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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366 |
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367 unsigned int count = 0; |
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368 |
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369 while (!that->done_) |
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370 { |
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371 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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372 count++; |
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373 if (count < sleep) |
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374 { |
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375 continue; |
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376 } |
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377 |
| 2217 | 378 Logging::Flush(); |
| 379 | |
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380 boost::mutex::scoped_lock lock(that->mutex_); |
| 1247 | 381 that->db_.FlushToDisk(); |
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382 count = 0; |
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383 } |
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384 |
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385 LOG(INFO) << "Stopping the database flushing thread"; |
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386 } |
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387 |
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388 |
| 1247 | 389 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
| 433 | 390 int64_t series, |
| 391 const DicomMap& dicomSummary) | |
| 392 { | |
| 393 try | |
| 394 { | |
| 656 | 395 const DicomValue* value; |
| 396 const DicomValue* value2; | |
| 397 | |
| 433 | 398 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
| 399 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
| 400 { | |
| 401 // Patch for series with temporal positions thanks to Will Ryder | |
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402 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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403 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
| 433 | 404 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
| 405 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 406 } | |
| 407 | |
| 408 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
| 409 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
| 410 { | |
| 411 // Support of Cardio-PET images | |
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412 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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413 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
| 433 | 414 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
| 415 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 416 } | |
| 417 | |
| 418 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
| 419 { | |
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420 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
| 433 | 421 } |
| 422 } | |
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423 catch (OrthancException&) |
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424 { |
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425 } |
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426 catch (boost::bad_lexical_cast&) |
| 433 | 427 { |
| 428 } | |
| 429 } | |
| 430 | |
| 431 | |
| 1237 | 432 |
| 433 | |
| 1238 | 434 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
| 1237 | 435 int64_t id, |
| 436 MetadataType type) | |
| 437 { | |
| 1238 | 438 std::string s; |
| 1247 | 439 if (!db_.LookupMetadata(s, id, type)) |
| 1237 | 440 { |
| 441 return false; | |
| 442 } | |
| 443 | |
| 444 try | |
| 445 { | |
| 1238 | 446 result = boost::lexical_cast<int64_t>(s); |
| 1237 | 447 return true; |
| 448 } | |
| 449 catch (boost::bad_lexical_cast&) | |
| 450 { | |
| 451 return false; | |
| 452 } | |
| 453 } | |
| 454 | |
| 455 | |
| 1297 | 456 void ServerIndex::LogChange(int64_t internalId, |
| 457 ChangeType changeType, | |
| 458 ResourceType resourceType, | |
| 459 const std::string& publicId) | |
| 460 { | |
| 461 ServerIndexChange change(changeType, resourceType, publicId); | |
|
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462 |
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463 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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464 { |
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465 db_.LogChange(internalId, change); |
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466 } |
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467 |
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468 assert(listener_.get() != NULL); |
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469 listener_->SignalChange(change); |
| 1297 | 470 } |
| 471 | |
| 1237 | 472 |
| 473 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
| 474 { | |
| 475 std::string oldValue; | |
| 476 | |
| 1247 | 477 if (db_.LookupGlobalProperty(oldValue, property)) |
| 1237 | 478 { |
| 479 uint64_t oldNumber; | |
| 480 | |
| 481 try | |
| 482 { | |
| 483 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
| 1247 | 484 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
| 1237 | 485 return oldNumber + 1; |
| 486 } | |
| 487 catch (boost::bad_lexical_cast&) | |
| 488 { | |
| 489 throw OrthancException(ErrorCode_InternalError); | |
| 490 } | |
| 491 } | |
| 492 else | |
| 493 { | |
| 494 // Initialize the sequence at "1" | |
| 1247 | 495 db_.SetGlobalProperty(property, "1"); |
| 1237 | 496 return 1; |
| 497 } | |
| 498 } | |
| 499 | |
| 500 | |
| 501 | |
| 1299 | 502 int64_t ServerIndex::CreateResource(const std::string& publicId, |
| 503 ResourceType type) | |
| 504 { | |
| 505 int64_t id = db_.CreateResource(publicId, type); | |
| 506 | |
| 507 ChangeType changeType; | |
| 508 switch (type) | |
| 509 { | |
| 510 case ResourceType_Patient: | |
| 511 changeType = ChangeType_NewPatient; | |
| 512 break; | |
| 513 | |
| 514 case ResourceType_Study: | |
| 515 changeType = ChangeType_NewStudy; | |
| 516 break; | |
| 517 | |
| 518 case ResourceType_Series: | |
| 519 changeType = ChangeType_NewSeries; | |
| 520 break; | |
| 521 | |
| 522 case ResourceType_Instance: | |
| 523 changeType = ChangeType_NewInstance; | |
| 524 break; | |
| 525 | |
| 526 default: | |
| 527 throw OrthancException(ErrorCode_InternalError); | |
| 528 } | |
| 529 | |
| 530 ServerIndexChange change(changeType, type, publicId); | |
| 531 db_.LogChange(id, change); | |
|
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532 |
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533 assert(listener_.get() != NULL); |
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534 listener_->SignalChange(change); |
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535 |
| 1299 | 536 return id; |
| 537 } | |
| 538 | |
| 1286 | 539 |
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540 ServerIndex::ServerIndex(ServerContext& context, |
| 1247 | 541 IDatabaseWrapper& db) : |
|
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542 done_(false), |
| 1247 | 543 db_(db), |
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544 maximumStorageSize_(0), |
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545 maximumPatients_(0) |
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546 { |
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547 listener_.reset(new Listener(context)); |
| 1247 | 548 db_.SetListener(*listener_); |
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549 |
| 1247 | 550 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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551 |
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552 // Initial recycling if the parameters have changed since the last |
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553 // execution of Orthanc |
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554 StandaloneRecycling(); |
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555 |
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556 if (db.HasFlushToDisk()) |
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557 { |
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558 flushThread_ = boost::thread(FlushThread, this); |
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559 } |
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560 |
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561 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
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562 } |
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563 |
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564 |
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565 |
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566 ServerIndex::~ServerIndex() |
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567 { |
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568 if (!done_) |
|
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569 { |
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570 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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571 Stop(); |
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572 } |
| 0 | 573 } |
| 574 | |
| 575 | |
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576 |
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577 void ServerIndex::Stop() |
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578 { |
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579 if (!done_) |
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580 { |
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581 done_ = true; |
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582 |
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583 if (db_.HasFlushToDisk() && |
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584 flushThread_.joinable()) |
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585 { |
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586 flushThread_.join(); |
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587 } |
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588 |
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589 if (unstableResourcesMonitorThread_.joinable()) |
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590 { |
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591 unstableResourcesMonitorThread_.join(); |
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592 } |
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593 } |
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594 } |
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595 |
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596 |
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597 |
| 2188 | 598 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
| 599 int64_t instance, | |
| 600 MetadataType metadata, | |
| 601 const std::string& value) | |
| 602 { | |
| 603 db_.SetMetadata(instance, metadata, value); | |
| 604 instanceMetadata[metadata] = value; | |
| 605 } | |
| 606 | |
| 607 | |
| 608 | |
|
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609 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
| 1822 | 610 DicomInstanceToStore& instanceToStore, |
| 611 const Attachments& attachments) | |
| 0 | 612 { |
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613 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 614 |
| 1822 | 615 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
| 616 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
| 617 | |
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618 instanceMetadata.clear(); |
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619 |
| 1822 | 620 DicomInstanceHasher hasher(instanceToStore.GetSummary()); |
| 0 | 621 |
| 622 try | |
| 623 { | |
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624 Transaction t(*this); |
| 0 | 625 |
| 202 | 626 // Do nothing if the instance already exists |
| 0 | 627 { |
| 432 | 628 ResourceType type; |
| 629 int64_t tmp; | |
| 1294 | 630 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
| 432 | 631 { |
| 632 assert(type == ResourceType_Instance); | |
| 1247 | 633 db_.GetAllMetadata(instanceMetadata, tmp); |
| 432 | 634 return StoreStatus_AlreadyStored; |
| 635 } | |
| 0 | 636 } |
| 637 | |
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638 // Ensure there is enough room in the storage for the new instance |
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639 uint64_t instanceSize = 0; |
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640 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 641 it != attachments.end(); ++it) |
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642 { |
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643 instanceSize += it->GetCompressedSize(); |
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644 } |
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645 |
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646 Recycle(instanceSize, hasher.HashPatient()); |
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647 |
| 202 | 648 // Create the instance |
| 1299 | 649 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
| 2120 | 650 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
| 202 | 651 |
| 432 | 652 // Detect up to which level the patient/study/series/instance |
| 653 // hierarchy must be created | |
| 654 int64_t patient = -1, study = -1, series = -1; | |
| 655 bool isNewPatient = false; | |
| 656 bool isNewStudy = false; | |
| 657 bool isNewSeries = false; | |
| 658 | |
| 0 | 659 { |
| 432 | 660 ResourceType dummy; |
| 661 | |
| 1294 | 662 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
| 432 | 663 { |
| 664 assert(dummy == ResourceType_Series); | |
| 665 // The patient, the study and the series already exist | |
| 666 | |
| 1294 | 667 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
| 668 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
| 432 | 669 assert(ok); |
| 670 } | |
| 1294 | 671 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
| 432 | 672 { |
| 673 assert(dummy == ResourceType_Study); | |
| 674 | |
| 675 // New series: The patient and the study already exist | |
| 676 isNewSeries = true; | |
| 677 | |
| 1294 | 678 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
| 432 | 679 assert(ok); |
| 680 } | |
| 1294 | 681 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
| 432 | 682 { |
| 683 assert(dummy == ResourceType_Patient); | |
| 684 | |
| 685 // New study and series: The patient already exist | |
| 686 isNewStudy = true; | |
| 687 isNewSeries = true; | |
| 688 } | |
| 689 else | |
| 690 { | |
| 691 // New patient, study and series: Nothing exists | |
| 692 isNewPatient = true; | |
| 693 isNewStudy = true; | |
| 694 isNewSeries = true; | |
| 695 } | |
| 696 } | |
| 697 | |
| 698 // Create the series if needed | |
| 699 if (isNewSeries) | |
| 700 { | |
| 1299 | 701 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
| 2120 | 702 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
| 432 | 703 } |
| 202 | 704 |
| 432 | 705 // Create the study if needed |
| 706 if (isNewStudy) | |
| 707 { | |
| 1299 | 708 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
| 2120 | 709 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
| 432 | 710 } |
| 711 | |
| 712 // Create the patient if needed | |
| 713 if (isNewPatient) | |
| 714 { | |
| 1299 | 715 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
| 2120 | 716 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
| 432 | 717 } |
| 202 | 718 |
| 432 | 719 // Create the parent-to-child links |
| 1247 | 720 db_.AttachChild(series, instance); |
| 432 | 721 |
| 722 if (isNewSeries) | |
| 723 { | |
| 1247 | 724 db_.AttachChild(study, series); |
| 0 | 725 } |
| 432 | 726 |
| 727 if (isNewStudy) | |
| 0 | 728 { |
| 1247 | 729 db_.AttachChild(patient, study); |
| 0 | 730 } |
| 731 | |
| 432 | 732 // Sanity checks |
| 733 assert(patient != -1); | |
| 734 assert(study != -1); | |
| 735 assert(series != -1); | |
| 736 assert(instance != -1); | |
| 737 | |
| 202 | 738 // Attach the files to the newly created instance |
|
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739 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 740 it != attachments.end(); ++it) |
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741 { |
| 1247 | 742 db_.AddAttachment(instance, *it); |
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231
diff
changeset
|
743 } |
| 202 | 744 |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
745 // Attach the user-specified metadata |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
746 for (MetadataMap::const_iterator |
|
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
747 it = metadata.begin(); it != metadata.end(); ++it) |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
748 { |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
749 switch (it->first.first) |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
750 { |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
751 case ResourceType_Patient: |
| 1247 | 752 db_.SetMetadata(patient, it->first.second, it->second); |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
753 break; |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
754 |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
755 case ResourceType_Study: |
| 1247 | 756 db_.SetMetadata(study, it->first.second, it->second); |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
757 break; |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
758 |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
759 case ResourceType_Series: |
| 1247 | 760 db_.SetMetadata(series, it->first.second, it->second); |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
761 break; |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
762 |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
763 case ResourceType_Instance: |
| 2188 | 764 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
765 break; |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
766 |
|
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
767 default: |
|
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
768 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
769 } |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
770 } |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
771 |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
772 // Attach the auto-computed metadata for the patient/study/series levels |
|
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
773 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
| 1247 | 774 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
| 775 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
| 776 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
777 |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
778 // Attach the auto-computed metadata for the instance level, |
|
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
779 // reflecting these additions into the input metadata map |
| 2188 | 780 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
| 781 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, instanceToStore.GetRemoteAet()); | |
|
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
782 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
|
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
783 EnumerationToString(instanceToStore.GetRequestOrigin())); |
|
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
784 |
|
1823
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1822
diff
changeset
|
785 { |
|
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
786 std::string s; |
|
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
787 if (instanceToStore.LookupTransferSyntax(s)) |
|
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
788 { |
|
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
789 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
|
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
790 } |
|
1823
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1822
diff
changeset
|
791 } |
|
0ef4e6e66b56
"Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1822
diff
changeset
|
792 |
| 202 | 793 const DicomValue* value; |
|
2208
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2189
diff
changeset
|
794 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
|
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2189
diff
changeset
|
795 !value->IsNull() && |
|
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2189
diff
changeset
|
796 !value->IsBinary()) |
|
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2189
diff
changeset
|
797 { |
|
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2189
diff
changeset
|
798 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
|
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2189
diff
changeset
|
799 } |
|
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2189
diff
changeset
|
800 |
| 202 | 801 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
| 802 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
| 0 | 803 { |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
804 if (!value->IsNull() && |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
805 !value->IsBinary()) |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
806 { |
| 2188 | 807 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
808 } |
| 0 | 809 } |
| 810 | |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
811 // Check whether the series of this new instance is now completed |
| 202 | 812 if (isNewSeries) |
| 813 { | |
| 1247 | 814 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
| 202 | 815 } |
| 816 | |
|
205
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
817 SeriesStatus seriesStatus = GetSeriesStatus(series); |
|
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
818 if (seriesStatus == SeriesStatus_Complete) |
|
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
819 { |
| 1237 | 820 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
|
205
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
821 } |
|
6ab754744446
logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
204
diff
changeset
|
822 |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
823 // Mark the parent resources of this instance as unstable |
|
1177
5b2d8c280ac2
Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1162
diff
changeset
|
824 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
|
5b2d8c280ac2
Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1162
diff
changeset
|
825 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
|
5b2d8c280ac2
Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1162
diff
changeset
|
826 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
827 |
|
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
828 t.Commit(instanceSize); |
|
268
4bc02e2254ec
preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
264
diff
changeset
|
829 |
| 0 | 830 return StoreStatus_Success; |
| 831 } | |
| 62 | 832 catch (OrthancException& e) |
| 0 | 833 { |
| 1247 | 834 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
| 0 | 835 } |
| 836 | |
| 837 return StoreStatus_Failure; | |
| 838 } | |
| 839 | |
| 840 | |
| 238 | 841 void ServerIndex::ComputeStatistics(Json::Value& target) |
| 0 | 842 { |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
843 boost::mutex::scoped_lock lock(mutex_); |
| 238 | 844 target = Json::objectValue; |
| 0 | 845 |
|
278
771f12042be9
more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
273
diff
changeset
|
846 uint64_t cs = currentStorageSize_; |
| 1247 | 847 assert(cs == db_.GetTotalCompressedSize()); |
| 848 uint64_t us = db_.GetTotalUncompressedSize(); | |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
849 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
| 238 | 850 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
|
1310
61ce8147f30d
custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1306
diff
changeset
|
851 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
|
61ce8147f30d
custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1306
diff
changeset
|
852 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
| 238 | 853 |
| 1247 | 854 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
| 855 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
| 856 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
| 857 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
| 238 | 858 } |
| 859 | |
|
187
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
860 |
|
8e673a65564d
refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
186
diff
changeset
|
861 |
| 585 | 862 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
| 199 | 863 { |
| 864 // Get the expected number of instances in this series (from the metadata) | |
| 1238 | 865 int64_t expected; |
| 866 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
| 199 | 867 { |
| 868 return SeriesStatus_Unknown; | |
| 869 } | |
| 870 | |
| 871 // Loop over the instances of this series | |
| 872 std::list<int64_t> children; | |
| 1247 | 873 db_.GetChildrenInternalId(children, id); |
| 199 | 874 |
| 1238 | 875 std::set<int64_t> instances; |
| 199 | 876 for (std::list<int64_t>::const_iterator |
| 656 | 877 it = children.begin(); it != children.end(); ++it) |
| 199 | 878 { |
| 879 // Get the index of this instance in the series | |
| 1238 | 880 int64_t index; |
| 881 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
| 199 | 882 { |
| 883 return SeriesStatus_Unknown; | |
| 884 } | |
| 885 | |
| 656 | 886 if (!(index > 0 && index <= expected)) |
| 199 | 887 { |
| 888 // Out-of-range instance index | |
| 889 return SeriesStatus_Inconsistent; | |
| 890 } | |
| 891 | |
| 892 if (instances.find(index) != instances.end()) | |
| 893 { | |
| 894 // Twice the same instance index | |
| 895 return SeriesStatus_Inconsistent; | |
| 896 } | |
| 897 | |
| 898 instances.insert(index); | |
| 899 } | |
| 900 | |
| 1238 | 901 if (static_cast<int64_t>(instances.size()) == expected) |
| 199 | 902 { |
| 903 return SeriesStatus_Complete; | |
| 904 } | |
| 905 else | |
| 906 { | |
| 907 return SeriesStatus_Missing; | |
| 908 } | |
| 909 } | |
| 910 | |
| 911 | |
| 202 | 912 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
|
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
913 int64_t resourceId, |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
914 ResourceType resourceType) |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
915 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
916 DicomMap tags; |
| 1247 | 917 db_.GetMainDicomTags(tags, resourceId); |
|
1676
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
918 |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
919 if (resourceType == ResourceType_Study) |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
920 { |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
921 DicomMap t1, t2; |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
922 tags.ExtractStudyInformation(t1); |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
923 tags.ExtractPatientInformation(t2); |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
924 |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
925 target["MainDicomTags"] = Json::objectValue; |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
926 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
927 |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
928 target["PatientMainDicomTags"] = Json::objectValue; |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
929 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
930 } |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
931 else |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
932 { |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
933 target["MainDicomTags"] = Json::objectValue; |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
934 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
|
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
935 } |
|
198
663cc6c46d0a
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diff
changeset
|
936 } |
|
663cc6c46d0a
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diff
changeset
|
937 |
|
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diff
changeset
|
938 bool ServerIndex::LookupResource(Json::Value& result, |
| 199 | 939 const std::string& publicId, |
| 940 ResourceType expectedType) | |
|
198
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changeset
|
941 { |
|
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diff
changeset
|
942 result = Json::objectValue; |
|
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diff
changeset
|
943 |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
944 boost::mutex::scoped_lock lock(mutex_); |
| 199 | 945 |
|
198
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|
946 // Lookup for the requested resource |
|
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|
947 int64_t id; |
|
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diff
changeset
|
948 ResourceType type; |
| 1294 | 949 if (!db_.LookupResource(id, type, publicId) || |
| 199 | 950 type != expectedType) |
|
198
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diff
changeset
|
951 { |
|
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diff
changeset
|
952 return false; |
|
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changeset
|
953 } |
|
663cc6c46d0a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
954 |
|
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diff
changeset
|
955 // Find the parent resource (if it exists) |
|
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changeset
|
956 if (type != ResourceType_Patient) |
|
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changeset
|
957 { |
|
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changeset
|
958 int64_t parentId; |
| 1247 | 959 if (!db_.LookupParent(parentId, id)) |
|
198
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diff
changeset
|
960 { |
|
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changeset
|
961 throw OrthancException(ErrorCode_InternalError); |
|
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changeset
|
962 } |
|
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|
963 |
| 1247 | 964 std::string parent = db_.GetPublicId(parentId); |
|
198
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changeset
|
965 |
|
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diff
changeset
|
966 switch (type) |
|
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diff
changeset
|
967 { |
|
269
f6fdf5abe751
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diff
changeset
|
968 case ResourceType_Study: |
|
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diff
changeset
|
969 result["ParentPatient"] = parent; |
|
f6fdf5abe751
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diff
changeset
|
970 break; |
|
198
663cc6c46d0a
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diff
changeset
|
971 |
|
269
f6fdf5abe751
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diff
changeset
|
972 case ResourceType_Series: |
|
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diff
changeset
|
973 result["ParentStudy"] = parent; |
|
f6fdf5abe751
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diff
changeset
|
974 break; |
|
198
663cc6c46d0a
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diff
changeset
|
975 |
|
269
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diff
changeset
|
976 case ResourceType_Instance: |
|
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diff
changeset
|
977 result["ParentSeries"] = parent; |
|
f6fdf5abe751
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diff
changeset
|
978 break; |
|
198
663cc6c46d0a
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diff
changeset
|
979 |
|
269
f6fdf5abe751
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diff
changeset
|
980 default: |
|
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changeset
|
981 throw OrthancException(ErrorCode_InternalError); |
|
198
663cc6c46d0a
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diff
changeset
|
982 } |
|
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diff
changeset
|
983 } |
|
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diff
changeset
|
984 |
|
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diff
changeset
|
985 // List the children resources |
|
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diff
changeset
|
986 std::list<std::string> children; |
| 1247 | 987 db_.GetChildrenPublicId(children, id); |
|
198
663cc6c46d0a
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diff
changeset
|
988 |
|
663cc6c46d0a
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parents:
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diff
changeset
|
989 if (type != ResourceType_Instance) |
|
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parents:
197
diff
changeset
|
990 { |
|
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parents:
197
diff
changeset
|
991 Json::Value c = Json::arrayValue; |
|
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197
diff
changeset
|
992 |
|
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before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
993 for (std::list<std::string>::const_iterator |
| 656 | 994 it = children.begin(); it != children.end(); ++it) |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
995 { |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
996 c.append(*it); |
|
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before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
997 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
998 |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
999 switch (type) |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1000 { |
|
269
f6fdf5abe751
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parents:
268
diff
changeset
|
1001 case ResourceType_Patient: |
|
f6fdf5abe751
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parents:
268
diff
changeset
|
1002 result["Studies"] = c; |
|
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1003 break; |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1004 |
|
269
f6fdf5abe751
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parents:
268
diff
changeset
|
1005 case ResourceType_Study: |
|
f6fdf5abe751
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parents:
268
diff
changeset
|
1006 result["Series"] = c; |
|
f6fdf5abe751
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268
diff
changeset
|
1007 break; |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
1008 |
|
269
f6fdf5abe751
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268
diff
changeset
|
1009 case ResourceType_Series: |
|
f6fdf5abe751
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parents:
268
diff
changeset
|
1010 result["Instances"] = c; |
|
f6fdf5abe751
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parents:
268
diff
changeset
|
1011 break; |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
1012 |
|
269
f6fdf5abe751
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diff
changeset
|
1013 default: |
|
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diff
changeset
|
1014 throw OrthancException(ErrorCode_InternalError); |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1015 } |
|
663cc6c46d0a
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diff
changeset
|
1016 } |
|
663cc6c46d0a
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diff
changeset
|
1017 |
|
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diff
changeset
|
1018 // Set the resource type |
|
663cc6c46d0a
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diff
changeset
|
1019 switch (type) |
|
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diff
changeset
|
1020 { |
|
269
f6fdf5abe751
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268
diff
changeset
|
1021 case ResourceType_Patient: |
|
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diff
changeset
|
1022 result["Type"] = "Patient"; |
|
f6fdf5abe751
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268
diff
changeset
|
1023 break; |
|
198
663cc6c46d0a
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diff
changeset
|
1024 |
|
269
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268
diff
changeset
|
1025 case ResourceType_Study: |
|
f6fdf5abe751
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diff
changeset
|
1026 result["Type"] = "Study"; |
|
f6fdf5abe751
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diff
changeset
|
1027 break; |
| 199 | 1028 |
|
269
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diff
changeset
|
1029 case ResourceType_Series: |
|
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diff
changeset
|
1030 { |
|
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diff
changeset
|
1031 result["Type"] = "Series"; |
|
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1032 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
|
198
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|
1033 |
| 1238 | 1034 int64_t i; |
| 1237 | 1035 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
| 1238 | 1036 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
|
269
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|
1037 else |
|
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diff
changeset
|
1038 result["ExpectedNumberOfInstances"] = Json::nullValue; |
|
200
9c58b2b03cf0
refactoring of read operations
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199
diff
changeset
|
1039 |
|
269
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diff
changeset
|
1040 break; |
|
200
9c58b2b03cf0
refactoring of read operations
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parents:
199
diff
changeset
|
1041 } |
|
9c58b2b03cf0
refactoring of read operations
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199
diff
changeset
|
1042 |
|
269
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changeset
|
1043 case ResourceType_Instance: |
|
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changeset
|
1044 { |
|
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changeset
|
1045 result["Type"] = "Instance"; |
|
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changeset
|
1046 |
|
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changeset
|
1047 FileInfo attachment; |
| 1247 | 1048 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
|
269
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changeset
|
1049 { |
|
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changeset
|
1050 throw OrthancException(ErrorCode_InternalError); |
|
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changeset
|
1051 } |
|
200
9c58b2b03cf0
refactoring of read operations
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199
diff
changeset
|
1052 |
|
269
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changeset
|
1053 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
|
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changeset
|
1054 result["FileUuid"] = attachment.GetUuid(); |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1055 |
| 1238 | 1056 int64_t i; |
| 1237 | 1057 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
| 1238 | 1058 result["IndexInSeries"] = static_cast<int>(i); |
|
269
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diff
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|
1059 else |
|
f6fdf5abe751
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diff
changeset
|
1060 result["IndexInSeries"] = Json::nullValue; |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1061 |
|
269
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diff
changeset
|
1062 break; |
|
f6fdf5abe751
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diff
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|
1063 } |
|
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diff
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|
1064 |
|
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diff
changeset
|
1065 default: |
|
f6fdf5abe751
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diff
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|
1066 throw OrthancException(ErrorCode_InternalError); |
|
198
663cc6c46d0a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1067 } |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1068 |
|
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diff
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|
1069 // Record the remaining information |
|
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1070 result["ID"] = publicId; |
|
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1071 MainDicomTagsToJson(result, id, type); |
|
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1072 |
| 315 | 1073 std::string tmp; |
| 1074 | |
| 1247 | 1075 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
| 1236 | 1076 { |
| 315 | 1077 result["AnonymizedFrom"] = tmp; |
| 1236 | 1078 } |
| 315 | 1079 |
| 1247 | 1080 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
| 1236 | 1081 { |
| 315 | 1082 result["ModifiedFrom"] = tmp; |
| 1236 | 1083 } |
| 315 | 1084 |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1085 if (type == ResourceType_Patient || |
|
3b735fdf320b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1086 type == ResourceType_Study || |
|
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1087 type == ResourceType_Series) |
|
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1088 { |
|
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1089 result["IsStable"] = !unstableResources_.Contains(id); |
|
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1090 |
| 1247 | 1091 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
| 1236 | 1092 { |
|
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1093 result["LastUpdate"] = tmp; |
| 1236 | 1094 } |
|
511
3b735fdf320b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1095 } |
|
3b735fdf320b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1096 |
|
198
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diff
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|
1097 return true; |
|
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diff
changeset
|
1098 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1099 |
| 0 | 1100 |
|
232
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diff
changeset
|
1101 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
|
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diff
changeset
|
1102 const std::string& instanceUuid, |
| 233 | 1103 FileContentType contentType) |
| 0 | 1104 { |
|
206
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1105 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 1106 |
|
193
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|
1107 int64_t id; |
|
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|
1108 ResourceType type; |
| 1294 | 1109 if (!db_.LookupResource(id, type, instanceUuid)) |
|
192
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|
1110 { |
|
1113
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Refactoring of HttpOutput ("Content-Length" header is now always sent)
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diff
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|
1111 throw OrthancException(ErrorCode_UnknownResource); |
|
192
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|
1112 } |
|
193
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|
1113 |
| 1247 | 1114 if (db_.LookupAttachment(attachment, id, contentType)) |
|
232
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|
1115 { |
| 233 | 1116 assert(attachment.GetContentType() == contentType); |
|
232
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|
1117 return true; |
|
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diff
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|
1118 } |
|
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diff
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|
1119 else |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1120 { |
|
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|
1121 return false; |
|
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|
1122 } |
|
192
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|
1123 } |
|
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|
1124 |
|
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diff
changeset
|
1125 |
|
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diff
changeset
|
1126 |
| 1354 | 1127 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
| 190 | 1128 ResourceType resourceType) |
| 0 | 1129 { |
| 1357 | 1130 boost::mutex::scoped_lock lock(mutex_); |
| 1131 db_.GetAllPublicIds(target, resourceType); | |
| 0 | 1132 } |
| 1133 | |
| 1134 | |
|
1509
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1135 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1136 ResourceType resourceType, |
|
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1137 size_t since, |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1138 size_t limit) |
|
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1139 { |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1140 if (limit == 0) |
|
0586ed8897f1
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1141 { |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1142 target.clear(); |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1143 return; |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1144 } |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1145 |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1146 boost::mutex::scoped_lock lock(mutex_); |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
1147 db_.GetAllPublicIds(target, resourceType, since, limit); |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1148 } |
|
0586ed8897f1
limit and since arguments while retrieving DICOM resources in the REST API
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diff
changeset
|
1149 |
|
0586ed8897f1
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parents:
1486
diff
changeset
|
1150 |
| 1244 | 1151 template <typename T> |
| 1152 static void FormatLog(Json::Value& target, | |
| 1153 const std::list<T>& log, | |
| 1154 const std::string& name, | |
| 1155 bool done, | |
| 1156 int64_t since) | |
| 1240 | 1157 { |
| 1158 Json::Value items = Json::arrayValue; | |
| 1244 | 1159 for (typename std::list<T>::const_iterator |
| 1304 | 1160 it = log.begin(); it != log.end(); ++it) |
| 1240 | 1161 { |
| 1162 Json::Value item; | |
| 1163 it->Format(item); | |
| 1164 items.append(item); | |
| 1165 } | |
| 1166 | |
| 1167 target = Json::objectValue; | |
| 1244 | 1168 target[name] = items; |
| 1240 | 1169 target["Done"] = done; |
| 1170 | |
| 1305 | 1171 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
| 1240 | 1172 target["Last"] = static_cast<int>(last); |
| 1173 } | |
| 1174 | |
| 1175 | |
| 1247 | 1176 void ServerIndex::GetChanges(Json::Value& target, |
| 204 | 1177 int64_t since, |
| 0 | 1178 unsigned int maxResults) |
| 1179 { | |
| 1240 | 1180 std::list<ServerIndexChange> changes; |
| 1181 bool done; | |
| 1182 | |
| 1183 { | |
| 1184 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1185 db_.GetChanges(changes, done, since, maxResults); |
| 1240 | 1186 } |
| 1187 | |
| 1244 | 1188 FormatLog(target, changes, "Changes", done, since); |
|
237
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233
diff
changeset
|
1189 } |
| 0 | 1190 |
| 1240 | 1191 |
| 1247 | 1192 void ServerIndex::GetLastChange(Json::Value& target) |
|
237
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diff
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|
1193 { |
| 1240 | 1194 std::list<ServerIndexChange> changes; |
| 1195 | |
| 1196 { | |
| 1197 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1198 db_.GetLastChange(changes); |
| 1240 | 1199 } |
| 1200 | |
| 1244 | 1201 FormatLog(target, changes, "Changes", true, 0); |
| 0 | 1202 } |
| 231 | 1203 |
| 1240 | 1204 |
| 231 | 1205 void ServerIndex::LogExportedResource(const std::string& publicId, |
| 1206 const std::string& remoteModality) | |
| 1207 { | |
| 1208 boost::mutex::scoped_lock lock(mutex_); | |
|
1310
61ce8147f30d
custom database back-end
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parents:
1306
diff
changeset
|
1209 Transaction transaction(*this); |
| 231 | 1210 |
| 1211 int64_t id; | |
| 1212 ResourceType type; | |
| 1294 | 1213 if (!db_.LookupResource(id, type, publicId)) |
| 231 | 1214 { |
| 1215 throw OrthancException(ErrorCode_InternalError); | |
| 1216 } | |
| 1217 | |
| 1218 std::string patientId; | |
| 1219 std::string studyInstanceUid; | |
| 1220 std::string seriesInstanceUid; | |
| 1221 std::string sopInstanceUid; | |
| 1222 | |
| 1223 int64_t currentId = id; | |
| 1224 ResourceType currentType = type; | |
| 1225 | |
| 1226 // Iteratively go up inside the patient/study/series/instance hierarchy | |
| 1227 bool done = false; | |
| 1228 while (!done) | |
| 1229 { | |
| 1230 DicomMap map; | |
| 1247 | 1231 db_.GetMainDicomTags(map, currentId); |
| 231 | 1232 |
| 1233 switch (currentType) | |
| 1234 { | |
|
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|
1235 case ResourceType_Patient: |
|
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diff
changeset
|
1236 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
|
1824a02e0951
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diff
changeset
|
1237 { |
|
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improved robustness for files with no PatientID
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diff
changeset
|
1238 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
|
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|
1239 } |
|
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|
1240 done = true; |
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|
1241 break; |
| 231 | 1242 |
|
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|
1243 case ResourceType_Study: |
|
2090
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diff
changeset
|
1244 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
|
1824a02e0951
improved robustness for files with no PatientID
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diff
changeset
|
1245 { |
|
1824a02e0951
improved robustness for files with no PatientID
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diff
changeset
|
1246 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
|
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|
1247 } |
|
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|
1248 currentType = ResourceType_Patient; |
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|
1249 break; |
| 231 | 1250 |
|
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|
1251 case ResourceType_Series: |
|
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changeset
|
1252 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
|
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improved robustness for files with no PatientID
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diff
changeset
|
1253 { |
|
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improved robustness for files with no PatientID
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diff
changeset
|
1254 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
|
1824a02e0951
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|
1255 } |
|
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|
1256 currentType = ResourceType_Study; |
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|
1257 break; |
| 231 | 1258 |
|
269
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|
1259 case ResourceType_Instance: |
|
2090
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improved robustness for files with no PatientID
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diff
changeset
|
1260 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
|
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1261 { |
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1262 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1263 } |
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1264 currentType = ResourceType_Series; |
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1265 break; |
| 231 | 1266 |
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1267 default: |
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1268 throw OrthancException(ErrorCode_InternalError); |
| 231 | 1269 } |
| 1270 | |
| 1271 // If we have not reached the Patient level, find the parent of | |
| 1272 // the current resource | |
| 1273 if (!done) | |
| 1274 { | |
| 1247 | 1275 bool ok = db_.LookupParent(currentId, currentId); |
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1276 assert(ok); |
| 231 | 1277 } |
| 1278 } | |
| 1279 | |
| 1246 | 1280 ExportedResource resource(-1, |
| 1281 type, | |
| 1282 publicId, | |
| 1283 remoteModality, | |
|
2475
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|
1284 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
| 1246 | 1285 patientId, |
| 1286 studyInstanceUid, | |
| 1287 seriesInstanceUid, | |
| 1288 sopInstanceUid); | |
|
1310
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1289 |
| 1247 | 1290 db_.LogExportedResource(resource); |
|
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1291 transaction.Commit(0); |
| 231 | 1292 } |
| 1293 | |
| 1294 | |
| 1247 | 1295 void ServerIndex::GetExportedResources(Json::Value& target, |
| 231 | 1296 int64_t since, |
| 1297 unsigned int maxResults) | |
| 1298 { | |
| 1244 | 1299 std::list<ExportedResource> exported; |
| 1300 bool done; | |
| 1301 | |
| 1302 { | |
| 1303 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1304 db_.GetExportedResources(exported, done, since, maxResults); |
| 1244 | 1305 } |
| 1306 | |
| 1307 FormatLog(target, exported, "Exports", done, since); | |
| 231 | 1308 } |
|
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1309 |
| 1244 | 1310 |
| 1247 | 1311 void ServerIndex::GetLastExportedResource(Json::Value& target) |
|
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1312 { |
| 1244 | 1313 std::list<ExportedResource> exported; |
| 1314 | |
| 1315 { | |
| 1316 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1317 db_.GetLastExportedResource(exported); |
| 1244 | 1318 } |
| 1319 | |
| 1320 FormatLog(target, exported, "Exports", true, 0); | |
|
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1321 } |
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1322 |
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1323 |
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1324 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1325 { |
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1326 if (maximumStorageSize_ != 0) |
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1327 { |
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1328 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
| 1247 | 1329 assert(db_.GetTotalCompressedSize() == currentSize); |
|
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1330 |
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1331 if (currentSize + instanceSize > maximumStorageSize_) |
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1332 { |
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1333 return true; |
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1334 } |
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1335 } |
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1336 |
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1337 if (maximumPatients_ != 0) |
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1338 { |
| 1247 | 1339 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1340 if (patientCount > maximumPatients_) |
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1341 { |
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1342 return true; |
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1343 } |
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1344 } |
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1345 |
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1346 return false; |
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1347 } |
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1348 |
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1349 |
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1350 void ServerIndex::Recycle(uint64_t instanceSize, |
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1351 const std::string& newPatientId) |
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1352 { |
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1353 if (!IsRecyclingNeeded(instanceSize)) |
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1354 { |
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1355 return; |
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1356 } |
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1357 |
|
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1358 // Check whether other DICOM instances from this patient are |
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1359 // already stored |
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1360 int64_t patientToAvoid; |
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1361 ResourceType type; |
| 1294 | 1362 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
|
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1363 |
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1364 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1365 { |
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1366 throw OrthancException(ErrorCode_InternalError); |
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1367 } |
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1368 |
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1369 // Iteratively select patient to remove until there is enough |
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1370 // space in the DICOM store |
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1371 int64_t patientToRecycle; |
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1372 while (true) |
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1373 { |
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1374 // If other instances of this patient are already in the store, |
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1375 // we must avoid to recycle them |
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1376 bool ok = hasPatientToAvoid ? |
| 1247 | 1377 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
| 1378 db_.SelectPatientToRecycle(patientToRecycle); | |
|
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1379 |
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1380 if (!ok) |
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1381 { |
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1382 throw OrthancException(ErrorCode_FullStorage); |
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1383 } |
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1384 |
|
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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|
1385 VLOG(1) << "Recycling one patient"; |
| 1247 | 1386 db_.DeleteResource(patientToRecycle); |
|
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1387 |
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1388 if (!IsRecyclingNeeded(instanceSize)) |
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1389 { |
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1390 // OK, we're done |
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1391 break; |
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1392 } |
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1393 } |
|
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1394 } |
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1395 |
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1396 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1397 { |
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1398 boost::mutex::scoped_lock lock(mutex_); |
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1399 maximumPatients_ = count; |
|
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1400 |
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1401 if (count == 0) |
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1402 { |
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1403 LOG(WARNING) << "No limit on the number of stored patients"; |
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1404 } |
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1405 else |
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1406 { |
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1407 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1408 } |
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1409 |
|
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1410 StandaloneRecycling(); |
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1411 } |
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1412 |
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1413 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1414 { |
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1415 boost::mutex::scoped_lock lock(mutex_); |
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1416 maximumStorageSize_ = size; |
|
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1417 |
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1418 if (size == 0) |
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1419 { |
|
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|
1420 LOG(WARNING) << "No limit on the size of the storage area"; |
|
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|
1421 } |
|
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|
1422 else |
|
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|
1423 { |
|
440
23e5b35e3c5c
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diff
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|
1424 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
|
270
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|
1425 } |
|
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|
1426 |
|
269
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|
1427 StandaloneRecycling(); |
|
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1428 } |
|
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|
1429 |
|
272
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|
1430 void ServerIndex::StandaloneRecycling() |
|
269
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|
1431 { |
|
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|
1432 // WARNING: No mutex here, do not include this as a public method |
|
278
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|
1433 Transaction t(*this); |
|
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|
1434 Recycle(0, ""); |
|
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|
1435 t.Commit(0); |
|
269
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|
1436 } |
|
272
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|
1437 |
|
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|
1438 |
|
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|
1439 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
|
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|
1440 { |
|
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|
1441 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1442 |
|
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|
1443 // Lookup for the requested resource |
|
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|
1444 int64_t id; |
|
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|
1445 ResourceType type; |
| 1294 | 1446 if (!db_.LookupResource(id, type, publicId) || |
|
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|
1447 type != ResourceType_Patient) |
|
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|
1448 { |
|
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|
1449 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
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|
1450 } |
|
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|
1451 |
| 1247 | 1452 return db_.IsProtectedPatient(id); |
|
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|
1453 } |
|
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|
1454 |
|
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|
1455 |
|
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|
1456 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
|
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|
1457 bool isProtected) |
|
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|
1458 { |
|
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|
1459 boost::mutex::scoped_lock lock(mutex_); |
|
1310
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|
1460 Transaction transaction(*this); |
|
272
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|
1461 |
|
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|
1462 // Lookup for the requested resource |
|
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|
1463 int64_t id; |
|
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|
1464 ResourceType type; |
| 1294 | 1465 if (!db_.LookupResource(id, type, publicId) || |
|
272
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|
1466 type != ResourceType_Patient) |
|
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|
1467 { |
|
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|
1468 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
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|
1469 } |
|
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|
1470 |
| 1247 | 1471 db_.SetProtectedPatient(id, isProtected); |
|
1310
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|
1472 transaction.Commit(0); |
|
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|
1473 |
|
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|
1474 if (isProtected) |
|
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|
1475 LOG(INFO) << "Patient " << publicId << " has been protected"; |
|
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|
1476 else |
|
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|
1477 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
|
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|
1478 } |
|
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|
1479 |
| 304 | 1480 |
|
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|
1481 void ServerIndex::GetChildren(std::list<std::string>& result, |
|
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|
1482 const std::string& publicId) |
|
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|
1483 { |
|
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|
1484 result.clear(); |
|
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|
1485 |
|
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|
1486 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1487 |
|
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|
1488 ResourceType type; |
|
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|
1489 int64_t resource; |
| 1294 | 1490 if (!db_.LookupResource(resource, type, publicId)) |
|
714
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|
1491 { |
|
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|
1492 throw OrthancException(ErrorCode_UnknownResource); |
|
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|
1493 } |
|
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|
1494 |
|
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|
1495 if (type == ResourceType_Instance) |
|
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|
1496 { |
|
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changeset
|
1497 // An instance cannot have a child |
|
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|
1498 throw OrthancException(ErrorCode_BadParameterType); |
|
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|
1499 } |
|
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|
1500 |
|
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changeset
|
1501 std::list<int64_t> tmp; |
| 1247 | 1502 db_.GetChildrenInternalId(tmp, resource); |
|
714
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|
1503 |
|
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|
1504 for (std::list<int64_t>::const_iterator |
|
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|
1505 it = tmp.begin(); it != tmp.end(); ++it) |
|
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|
1506 { |
| 1247 | 1507 result.push_back(db_.GetPublicId(*it)); |
|
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|
1508 } |
|
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|
1509 } |
|
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|
1510 |
|
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|
1511 |
| 304 | 1512 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
| 1513 const std::string& publicId) | |
| 1514 { | |
| 1515 result.clear(); | |
| 1516 | |
| 1517 boost::mutex::scoped_lock lock(mutex_); | |
| 1518 | |
| 1519 ResourceType type; | |
| 1520 int64_t top; | |
| 1294 | 1521 if (!db_.LookupResource(top, type, publicId)) |
| 304 | 1522 { |
| 1523 throw OrthancException(ErrorCode_UnknownResource); | |
| 1524 } | |
| 1525 | |
| 1526 if (type == ResourceType_Instance) | |
| 1527 { | |
| 1528 // The resource is already an instance: Do not go down the hierarchy | |
| 1529 result.push_back(publicId); | |
| 1530 return; | |
| 1531 } | |
| 1532 | |
| 1533 std::stack<int64_t> toExplore; | |
| 1534 toExplore.push(top); | |
| 1535 | |
| 1536 std::list<int64_t> tmp; | |
| 1537 | |
| 1538 while (!toExplore.empty()) | |
| 1539 { | |
| 1540 // Get the internal ID of the current resource | |
| 1541 int64_t resource = toExplore.top(); | |
| 1542 toExplore.pop(); | |
| 1543 | |
| 1247 | 1544 if (db_.GetResourceType(resource) == ResourceType_Instance) |
| 304 | 1545 { |
| 1247 | 1546 result.push_back(db_.GetPublicId(resource)); |
| 304 | 1547 } |
| 1548 else | |
| 1549 { | |
| 1550 // Tag all the children of this resource as to be explored | |
| 1247 | 1551 db_.GetChildrenInternalId(tmp, resource); |
| 304 | 1552 for (std::list<int64_t>::const_iterator |
| 656 | 1553 it = tmp.begin(); it != tmp.end(); ++it) |
| 304 | 1554 { |
| 1555 toExplore.push(*it); | |
| 1556 } | |
| 1557 } | |
| 1558 } | |
| 1559 } | |
| 1560 | |
|
306
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|
1561 |
|
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|
1562 void ServerIndex::SetMetadata(const std::string& publicId, |
|
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|
1563 MetadataType type, |
|
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|
1564 const std::string& value) |
|
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|
1565 { |
|
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|
1566 boost::mutex::scoped_lock lock(mutex_); |
|
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
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|
1567 Transaction t(*this); |
|
306
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|
1568 |
|
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|
1569 ResourceType rtype; |
|
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|
1570 int64_t id; |
| 1294 | 1571 if (!db_.LookupResource(id, rtype, publicId)) |
|
306
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|
1572 { |
|
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changeset
|
1573 throw OrthancException(ErrorCode_UnknownResource); |
|
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|
1574 } |
|
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|
1575 |
| 1247 | 1576 db_.SetMetadata(id, type, value); |
|
1773
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|
1577 |
|
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changeset
|
1578 if (IsUserMetadata(type)) |
|
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changeset
|
1579 { |
|
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diff
changeset
|
1580 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
|
613df4362575
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changeset
|
1581 } |
|
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diff
changeset
|
1582 |
|
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1583 t.Commit(0); |
|
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1584 } |
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1585 |
| 438 | 1586 |
| 1587 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
| 1588 MetadataType type) | |
| 1589 { | |
| 1590 boost::mutex::scoped_lock lock(mutex_); | |
|
1773
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1591 Transaction t(*this); |
| 438 | 1592 |
| 1593 ResourceType rtype; | |
| 1594 int64_t id; | |
| 1294 | 1595 if (!db_.LookupResource(id, rtype, publicId)) |
| 438 | 1596 { |
| 1597 throw OrthancException(ErrorCode_UnknownResource); | |
| 1598 } | |
| 1599 | |
| 1247 | 1600 db_.DeleteMetadata(id, type); |
|
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1601 |
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1602 if (IsUserMetadata(type)) |
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1603 { |
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1604 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1605 } |
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1606 |
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1607 t.Commit(0); |
| 438 | 1608 } |
| 1609 | |
| 1610 | |
|
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1611 bool ServerIndex::LookupMetadata(std::string& target, |
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1612 const std::string& publicId, |
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1613 MetadataType type) |
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1614 { |
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1615 boost::mutex::scoped_lock lock(mutex_); |
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1616 |
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1617 ResourceType rtype; |
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1618 int64_t id; |
| 1294 | 1619 if (!db_.LookupResource(id, rtype, publicId)) |
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1620 { |
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1621 throw OrthancException(ErrorCode_UnknownResource); |
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1622 } |
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1623 |
| 1247 | 1624 return db_.LookupMetadata(target, id, type); |
|
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1625 } |
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1626 |
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1627 |
| 739 | 1628 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
|
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1629 const std::string& publicId) |
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1630 { |
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1631 boost::mutex::scoped_lock lock(mutex_); |
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1632 |
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1633 ResourceType rtype; |
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1634 int64_t id; |
| 1294 | 1635 if (!db_.LookupResource(id, rtype, publicId)) |
|
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1636 { |
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1637 throw OrthancException(ErrorCode_UnknownResource); |
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1638 } |
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1639 |
| 1247 | 1640 db_.ListAvailableMetadata(target, id); |
|
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1641 } |
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1642 |
|
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1643 |
|
697
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1644 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1645 const std::string& publicId, |
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1646 ResourceType expectedType) |
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1647 { |
|
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1648 boost::mutex::scoped_lock lock(mutex_); |
|
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1649 |
|
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1650 ResourceType type; |
|
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1651 int64_t id; |
| 1294 | 1652 if (!db_.LookupResource(id, type, publicId) || |
|
697
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1653 expectedType != type) |
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1654 { |
|
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1655 throw OrthancException(ErrorCode_UnknownResource); |
|
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1656 } |
|
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1657 |
| 1247 | 1658 db_.ListAvailableAttachments(target, id); |
|
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1659 } |
|
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1660 |
|
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1661 |
|
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1662 bool ServerIndex::LookupParent(std::string& target, |
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1663 const std::string& publicId) |
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1664 { |
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1665 boost::mutex::scoped_lock lock(mutex_); |
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1666 |
|
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1667 ResourceType type; |
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1668 int64_t id; |
| 1294 | 1669 if (!db_.LookupResource(id, type, publicId)) |
|
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1670 { |
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1671 throw OrthancException(ErrorCode_UnknownResource); |
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1672 } |
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1673 |
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|
1674 int64_t parentId; |
| 1247 | 1675 if (db_.LookupParent(parentId, id)) |
|
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1676 { |
| 1247 | 1677 target = db_.GetPublicId(parentId); |
|
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1678 return true; |
|
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1679 } |
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1680 else |
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1681 { |
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1682 return false; |
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1683 } |
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1684 } |
| 310 | 1685 |
| 1686 | |
| 1687 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
| 1688 { | |
| 1689 boost::mutex::scoped_lock lock(mutex_); | |
|
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1690 Transaction transaction(*this); |
| 311 | 1691 |
| 1237 | 1692 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
|
1310
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|
1693 transaction.Commit(0); |
| 311 | 1694 |
| 1695 return seq; | |
| 310 | 1696 } |
| 315 | 1697 |
| 1698 | |
| 1699 | |
| 1700 void ServerIndex::LogChange(ChangeType changeType, | |
| 1701 const std::string& publicId) | |
| 1702 { | |
| 1703 boost::mutex::scoped_lock lock(mutex_); | |
|
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1704 Transaction transaction(*this); |
| 315 | 1705 |
| 1706 int64_t id; | |
| 1707 ResourceType type; | |
| 1294 | 1708 if (!db_.LookupResource(id, type, publicId)) |
| 315 | 1709 { |
| 1710 throw OrthancException(ErrorCode_UnknownResource); | |
| 1711 } | |
| 1712 | |
| 1237 | 1713 LogChange(id, changeType, type, publicId); |
|
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1714 transaction.Commit(0); |
| 315 | 1715 } |
|
413
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|
1716 |
|
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|
1717 |
|
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|
1718 void ServerIndex::DeleteChanges() |
|
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|
1719 { |
|
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|
1720 boost::mutex::scoped_lock lock(mutex_); |
| 1286 | 1721 db_.ClearChanges(); |
|
413
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|
1722 } |
|
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|
1723 |
|
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|
1724 void ServerIndex::DeleteExportedResources() |
|
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|
1725 { |
|
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|
1726 boost::mutex::scoped_lock lock(mutex_); |
| 1286 | 1727 db_.ClearExportedResources(); |
|
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1728 } |
|
440
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1729 |
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1730 |
| 646 | 1731 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
| 1732 /* out */ uint64_t& uncompressedSize, | |
| 1733 /* out */ unsigned int& countStudies, | |
| 1734 /* out */ unsigned int& countSeries, | |
| 1735 /* out */ unsigned int& countInstances, | |
| 1736 /* in */ int64_t id, | |
| 1737 /* in */ ResourceType type) | |
|
440
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|
1738 { |
| 646 | 1739 std::stack<int64_t> toExplore; |
| 1740 toExplore.push(id); | |
|
440
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|
1741 |
| 646 | 1742 countInstances = 0; |
| 1743 countSeries = 0; | |
| 1744 countStudies = 0; | |
| 1745 compressedSize = 0; | |
| 1746 uncompressedSize = 0; | |
|
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1747 |
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|
1748 while (!toExplore.empty()) |
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|
1749 { |
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|
1750 // Get the internal ID of the current resource |
|
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|
1751 int64_t resource = toExplore.top(); |
|
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|
1752 toExplore.pop(); |
|
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|
1753 |
| 1247 | 1754 ResourceType thisType = db_.GetResourceType(resource); |
|
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1755 |
|
702
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parents:
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diff
changeset
|
1756 std::list<FileContentType> f; |
| 1247 | 1757 db_.ListAvailableAttachments(f, resource); |
|
702
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diff
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|
1758 |
|
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diff
changeset
|
1759 for (std::list<FileContentType>::const_iterator |
|
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diff
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|
1760 it = f.begin(); it != f.end(); ++it) |
|
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diff
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|
1761 { |
|
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diff
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|
1762 FileInfo attachment; |
| 1247 | 1763 if (db_.LookupAttachment(attachment, resource, *it)) |
|
702
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diff
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|
1764 { |
|
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|
1765 compressedSize += attachment.GetCompressedSize(); |
|
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|
1766 uncompressedSize += attachment.GetUncompressedSize(); |
|
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diff
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|
1767 } |
|
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diff
changeset
|
1768 } |
|
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diff
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|
1769 |
|
440
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diff
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|
1770 if (thisType == ResourceType_Instance) |
|
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|
1771 { |
|
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diff
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|
1772 countInstances++; |
|
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diff
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|
1773 } |
|
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diff
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|
1774 else |
|
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diff
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|
1775 { |
|
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diff
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|
1776 switch (thisType) |
|
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diff
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|
1777 { |
|
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diff
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|
1778 case ResourceType_Study: |
|
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diff
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|
1779 countStudies++; |
|
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diff
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|
1780 break; |
|
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diff
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|
1781 |
|
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diff
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|
1782 case ResourceType_Series: |
|
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diff
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|
1783 countSeries++; |
|
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diff
changeset
|
1784 break; |
|
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diff
changeset
|
1785 |
|
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diff
changeset
|
1786 default: |
|
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diff
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|
1787 break; |
|
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diff
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|
1788 } |
|
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diff
changeset
|
1789 |
|
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diff
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|
1790 // Tag all the children of this resource as to be explored |
|
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diff
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|
1791 std::list<int64_t> tmp; |
| 1247 | 1792 db_.GetChildrenInternalId(tmp, resource); |
|
440
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diff
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|
1793 for (std::list<int64_t>::const_iterator |
| 656 | 1794 it = tmp.begin(); it != tmp.end(); ++it) |
|
440
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diff
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|
1795 { |
|
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diff
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|
1796 toExplore.push(*it); |
|
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diff
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|
1797 } |
|
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diff
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|
1798 } |
|
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|
1799 } |
|
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|
1800 |
| 646 | 1801 if (countStudies == 0) |
| 1802 { | |
| 1803 countStudies = 1; | |
| 1804 } | |
| 1805 | |
| 1806 if (countSeries == 0) | |
| 1807 { | |
| 1808 countSeries = 1; | |
| 1809 } | |
| 1810 } | |
| 1811 | |
| 1812 | |
| 1813 | |
| 1814 void ServerIndex::GetStatistics(Json::Value& target, | |
| 1815 const std::string& publicId) | |
| 1816 { | |
| 1817 boost::mutex::scoped_lock lock(mutex_); | |
| 1818 | |
| 1819 ResourceType type; | |
| 1820 int64_t top; | |
| 1294 | 1821 if (!db_.LookupResource(top, type, publicId)) |
| 646 | 1822 { |
| 1823 throw OrthancException(ErrorCode_UnknownResource); | |
| 1824 } | |
| 1825 | |
| 1826 uint64_t uncompressedSize; | |
| 1827 uint64_t compressedSize; | |
| 1828 unsigned int countStudies; | |
| 1829 unsigned int countSeries; | |
| 1830 unsigned int countInstances; | |
| 1831 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1832 countSeries, countInstances, top, type); | |
| 1833 | |
|
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|
1834 target = Json::objectValue; |
|
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1835 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
|
1310
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diff
changeset
|
1836 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
|
440
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diff
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|
1837 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
|
1310
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diff
changeset
|
1838 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
|
440
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changeset
|
1839 |
|
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diff
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|
1840 switch (type) |
|
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1841 { |
|
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1842 // Do NOT add "break" below this point! |
|
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|
1843 case ResourceType_Patient: |
|
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1844 target["CountStudies"] = countStudies; |
|
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|
1845 |
|
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diff
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|
1846 case ResourceType_Study: |
|
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|
1847 target["CountSeries"] = countSeries; |
|
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1848 |
|
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diff
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|
1849 case ResourceType_Series: |
|
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1850 target["CountInstances"] = countInstances; |
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|
1851 |
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|
1852 case ResourceType_Instance: |
|
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|
1853 default: |
|
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|
1854 break; |
|
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1855 } |
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1856 } |
|
511
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|
1857 |
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|
1858 |
| 646 | 1859 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
| 1860 /* out */ uint64_t& uncompressedSize, | |
| 1861 /* out */ unsigned int& countStudies, | |
| 1862 /* out */ unsigned int& countSeries, | |
| 1863 /* out */ unsigned int& countInstances, | |
| 1864 const std::string& publicId) | |
| 1865 { | |
| 1866 boost::mutex::scoped_lock lock(mutex_); | |
| 1867 | |
| 1868 ResourceType type; | |
| 1869 int64_t top; | |
| 1294 | 1870 if (!db_.LookupResource(top, type, publicId)) |
| 646 | 1871 { |
| 1872 throw OrthancException(ErrorCode_UnknownResource); | |
| 1873 } | |
| 1874 | |
| 1875 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1876 countSeries, countInstances, top, type); | |
| 1877 } | |
| 1878 | |
| 1879 | |
|
511
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1880 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
|
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|
1881 { |
|
2069
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New configuration options: "DicomScuTimeout" and "DicomScpTimeout" + validation of non-negative options
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diff
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|
1882 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60); |
|
511
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1883 if (stableAge <= 0) |
|
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|
1884 { |
|
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1885 stableAge = 60; |
|
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1886 } |
|
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|
1887 |
|
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|
1888 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
|
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1889 |
|
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|
1890 while (!that->done_) |
|
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|
1891 { |
|
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1892 // Check for stable resources each second |
|
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|
1893 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
|
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|
1894 |
|
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|
1895 boost::mutex::scoped_lock lock(that->mutex_); |
| 513 | 1896 |
|
511
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1897 while (!that->unstableResources_.IsEmpty() && |
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|
1898 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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|
1899 { |
|
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|
1900 // This DICOM resource has not received any new instance for |
|
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|
1901 // some time. It can be considered as stable. |
|
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|
1902 |
|
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|
1903 UnstableResourcePayload payload; |
|
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|
1904 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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|
1905 |
| 513 | 1906 // Ensure that the resource is still existing before logging the change |
| 1247 | 1907 if (that->db_.IsExistingResource(id)) |
|
511
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|
1908 { |
|
1177
5b2d8c280ac2
Plugins can monitor changes through callbacks
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changeset
|
1909 switch (payload.GetResourceType()) |
| 513 | 1910 { |
|
1177
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Plugins can monitor changes through callbacks
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diff
changeset
|
1911 case ResourceType_Patient: |
| 1237 | 1912 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
| 513 | 1913 break; |
|
511
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1914 |
|
1177
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diff
changeset
|
1915 case ResourceType_Study: |
| 1237 | 1916 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
| 513 | 1917 break; |
|
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1918 |
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1919 case ResourceType_Series: |
| 1237 | 1920 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
| 513 | 1921 break; |
| 1922 | |
| 1923 default: | |
| 1924 throw OrthancException(ErrorCode_InternalError); | |
| 1925 } | |
| 1926 | |
| 1927 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
|
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1928 } |
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1929 } |
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1930 } |
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1931 |
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1932 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1933 } |
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1934 |
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1935 |
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1936 void ServerIndex::MarkAsUnstable(int64_t id, |
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1937 Orthanc::ResourceType type, |
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1938 const std::string& publicId) |
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1939 { |
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1940 // WARNING: Before calling this method, "mutex_" must be locked. |
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1941 |
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1942 assert(type == Orthanc::ResourceType_Patient || |
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1943 type == Orthanc::ResourceType_Study || |
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1944 type == Orthanc::ResourceType_Series); |
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1945 |
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1946 UnstableResourcePayload payload(type, publicId); |
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1947 unstableResources_.AddOrMakeMostRecent(id, payload); |
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1948 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
|
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1949 |
| 1237 | 1950 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1951 } |
| 521 | 1952 |
| 1953 | |
| 1954 | |
|
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1955 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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1956 ResourceType level, |
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1957 const DicomTag& tag, |
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1958 const std::string& value) |
| 615 | 1959 { |
| 1727 | 1960 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
| 1961 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
| 1962 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
| 1963 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
| 1964 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
| 1725 | 1965 |
| 615 | 1966 result.clear(); |
| 1967 | |
| 1968 boost::mutex::scoped_lock lock(mutex_); | |
| 1969 | |
| 1746 | 1970 LookupIdentifierQuery query(level); |
| 1971 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
| 1972 query.Apply(result, db_); | |
| 615 | 1973 } |
| 1974 | |
| 1975 | |
|
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1976 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1977 const std::string& publicId) |
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1978 { |
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1979 boost::mutex::scoped_lock lock(mutex_); |
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1980 |
|
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1981 Transaction t(*this); |
|
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1982 |
|
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1983 ResourceType resourceType; |
|
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1984 int64_t resourceId; |
| 1294 | 1985 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
|
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1986 { |
|
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1987 return StoreStatus_Failure; // Inexistent resource |
|
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1988 } |
|
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1989 |
|
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1990 // Remove possible previous attachment |
| 1247 | 1991 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
|
699
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1992 |
|
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|
1993 // Locate the patient of the target resource |
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1994 int64_t patientId = resourceId; |
|
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|
1995 for (;;) |
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|
1996 { |
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|
1997 int64_t parent; |
| 1247 | 1998 if (db_.LookupParent(parent, patientId)) |
|
704
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1999 { |
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|
2000 // We have not reached the patient level yet |
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2001 patientId = parent; |
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2002 } |
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|
2003 else |
|
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|
2004 { |
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|
2005 // We have reached the patient level |
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|
2006 break; |
|
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|
2007 } |
|
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|
2008 } |
|
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|
2009 |
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|
2010 // Possibly apply the recycling mechanism while preserving this patient |
| 1247 | 2011 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
| 2012 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
|
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|
2013 |
| 1247 | 2014 db_.AddAttachment(resourceId, attachment); |
|
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|
2015 |
|
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|
2016 if (IsUserContentType(attachment.GetContentType())) |
|
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|
2017 { |
|
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|
2018 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
|
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|
2019 } |
|
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|
2020 |
|
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|
2021 t.Commit(attachment.GetCompressedSize()); |
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|
2022 |
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|
2023 return StoreStatus_Success; |
|
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|
2024 } |
|
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|
2025 |
|
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|
2026 |
|
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|
2027 void ServerIndex::DeleteAttachment(const std::string& publicId, |
|
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|
2028 FileContentType type) |
|
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|
2029 { |
|
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changeset
|
2030 boost::mutex::scoped_lock lock(mutex_); |
|
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|
2031 Transaction t(*this); |
|
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|
2032 |
|
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|
2033 ResourceType rtype; |
|
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|
2034 int64_t id; |
| 1294 | 2035 if (!db_.LookupResource(id, rtype, publicId)) |
|
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|
2036 { |
|
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|
2037 throw OrthancException(ErrorCode_UnknownResource); |
|
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2038 } |
|
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|
2039 |
| 1247 | 2040 db_.DeleteAttachment(id, type); |
|
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|
2041 |
|
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|
2042 if (IsUserContentType(type)) |
|
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|
2043 { |
|
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|
2044 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
|
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|
2045 } |
|
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|
2046 |
|
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|
2047 t.Commit(0); |
|
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|
2048 } |
|
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|
2049 |
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|
2050 |
|
1002
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|
2051 bool ServerIndex::GetMetadata(Json::Value& target, |
|
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|
2052 const std::string& publicId) |
|
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|
2053 { |
|
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changeset
|
2054 boost::mutex::scoped_lock lock(mutex_); |
|
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changeset
|
2055 |
|
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changeset
|
2056 target = Json::objectValue; |
|
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|
2057 |
|
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changeset
|
2058 ResourceType type; |
|
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changeset
|
2059 int64_t id; |
| 1294 | 2060 if (!db_.LookupResource(id, type, publicId)) |
|
1002
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|
2061 { |
|
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diff
changeset
|
2062 return false; |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2063 } |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2064 |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2065 std::list<MetadataType> metadata; |
| 1247 | 2066 db_.ListAvailableMetadata(metadata, id); |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2067 |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2068 for (std::list<MetadataType>::const_iterator |
| 1304 | 2069 it = metadata.begin(); it != metadata.end(); ++it) |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2070 { |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2071 std::string key = EnumerationToString(*it); |
| 1238 | 2072 |
| 2073 std::string value; | |
| 1247 | 2074 if (!db_.LookupMetadata(value, id, *it)) |
| 1238 | 2075 { |
| 2076 value.clear(); | |
| 2077 } | |
| 2078 | |
|
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2079 target[key] = value; |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2080 } |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2081 |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2082 return true; |
|
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2083 } |
|
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2084 |
|
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2085 |
|
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2086 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2087 const std::string& value) |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2088 { |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2089 boost::mutex::scoped_lock lock(mutex_); |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2090 db_.SetGlobalProperty(property, value); |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2091 } |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2092 |
|
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2093 |
|
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2094 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
|
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2095 const std::string& defaultValue) |
|
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2096 { |
|
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2097 boost::mutex::scoped_lock lock(mutex_); |
| 1239 | 2098 |
| 2099 std::string value; | |
| 1247 | 2100 if (db_.LookupGlobalProperty(value, property)) |
| 1239 | 2101 { |
| 2102 return value; | |
| 2103 } | |
| 2104 else | |
| 2105 { | |
| 2106 return defaultValue; | |
| 2107 } | |
|
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2108 } |
|
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2109 |
| 1352 | 2110 |
| 2111 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
| 2112 const std::string& publicId, | |
|
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2113 ResourceType expectedType, |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2114 ResourceType levelOfInterest) |
| 1352 | 2115 { |
|
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2116 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2117 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2118 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2119 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2120 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2121 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2122 { |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2123 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2124 } |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2125 |
| 1352 | 2126 result.Clear(); |
| 2127 | |
| 2128 boost::mutex::scoped_lock lock(mutex_); | |
| 2129 | |
| 2130 // Lookup for the requested resource | |
| 2131 int64_t id; | |
| 2132 ResourceType type; | |
| 2133 if (!db_.LookupResource(id, type, publicId) || | |
| 2134 type != expectedType) | |
| 2135 { | |
| 2136 return false; | |
| 2137 } | |
|
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2138 |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2139 if (type == ResourceType_Study) |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2140 { |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2141 DicomMap tmp; |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2142 db_.GetMainDicomTags(tmp, id); |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2143 |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2144 switch (levelOfInterest) |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2145 { |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2146 case ResourceType_Patient: |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2147 tmp.ExtractPatientInformation(result); |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2148 return true; |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2149 |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2150 case ResourceType_Study: |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2151 tmp.ExtractStudyInformation(result); |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2152 return true; |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2153 |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2154 default: |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2155 throw OrthancException(ErrorCode_InternalError); |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2156 } |
|
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2157 } |
| 1352 | 2158 else |
| 2159 { | |
| 2160 db_.GetMainDicomTags(result, id); | |
| 2161 return true; | |
| 2162 } | |
| 2163 } | |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2164 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2165 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2166 bool ServerIndex::LookupResourceType(ResourceType& type, |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2167 const std::string& publicId) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2168 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2169 boost::mutex::scoped_lock lock(mutex_); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2170 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2171 int64_t id; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2172 return db_.LookupResource(id, type, publicId); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2173 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2174 |
|
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2175 |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2176 unsigned int ServerIndex::GetDatabaseVersion() |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2177 { |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2178 boost::mutex::scoped_lock lock(mutex_); |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2179 return db_.GetDatabaseVersion(); |
|
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2180 } |
|
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2181 |
|
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2182 |
| 1753 | 2183 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
| 2184 std::vector<std::string>& instances, | |
|
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1754
diff
changeset
|
2185 const ::Orthanc::LookupResource& lookup) |
|
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2186 { |
| 1753 | 2187 boost::mutex::scoped_lock lock(mutex_); |
| 2188 | |
| 2189 std::list<int64_t> tmp; | |
| 2190 lookup.FindCandidates(tmp, db_); | |
| 2191 | |
| 2192 resources.resize(tmp.size()); | |
| 2193 instances.resize(tmp.size()); | |
| 2194 | |
| 2195 size_t pos = 0; | |
| 2196 for (std::list<int64_t>::const_iterator | |
| 2197 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
| 2198 { | |
| 1754 | 2199 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
| 2200 | |
| 1753 | 2201 int64_t instance; |
| 2120 | 2202 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
| 1753 | 2203 { |
| 2204 throw OrthancException(ErrorCode_InternalError); | |
| 2205 } | |
| 2206 | |
| 2207 resources[pos] = db_.GetPublicId(*it); | |
| 2208 instances[pos] = db_.GetPublicId(instance); | |
| 2209 } | |
|
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2210 } |
|
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2211 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2212 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2213 bool ServerIndex::LookupParent(std::string& target, |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2214 const std::string& publicId, |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2215 ResourceType parentType) |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2216 { |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2217 boost::mutex::scoped_lock lock(mutex_); |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2218 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2219 ResourceType type; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2220 int64_t id; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2221 if (!db_.LookupResource(id, type, publicId)) |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2222 { |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2223 throw OrthancException(ErrorCode_UnknownResource); |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2224 } |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2225 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2226 while (type != parentType) |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2227 { |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2228 int64_t parentId; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2229 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2230 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2231 !db_.LookupParent(parentId, id)) |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2232 { |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2233 return false; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2234 } |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2235 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2236 id = parentId; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2237 type = GetParentResourceType(type); |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2238 } |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2239 |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2240 target = db_.GetPublicId(id); |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2241 return true; |
|
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2242 } |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2243 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2244 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2245 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2246 { |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2247 DicomMap summary; |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2248 dicom.ExtractDicomSummary(summary); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2249 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2250 DicomInstanceHasher hasher(summary); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2251 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2252 boost::mutex::scoped_lock lock(mutex_); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2253 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2254 try |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2255 { |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2256 Transaction t(*this); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2257 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2258 int64_t patient = -1, study = -1, series = -1, instance = -1; |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2259 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2260 ResourceType dummy; |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2261 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2262 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2263 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2264 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2265 patient == -1 || |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2266 study == -1 || |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2267 series == -1 || |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2268 instance == -1) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2269 { |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2270 throw OrthancException(ErrorCode_InternalError); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2271 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2272 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2273 db_.ClearMainDicomTags(patient); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2274 db_.ClearMainDicomTags(study); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2275 db_.ClearMainDicomTags(series); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2276 db_.ClearMainDicomTags(instance); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2277 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2278 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2279 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2280 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2281 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2282 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2283 { |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2284 std::string s; |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2285 if (dicom.LookupTransferSyntax(s)) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2286 { |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2287 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2288 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2289 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2290 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2291 const DicomValue* value; |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2292 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2293 !value->IsNull() && |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2294 !value->IsBinary()) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2295 { |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2296 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2297 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2298 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2299 t.Commit(0); // No change in the DB size |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2300 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2301 catch (OrthancException& e) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2302 { |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2303 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2304 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2305 } |
| 0 | 2306 } |