Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2087:e9e6ffbf0fd5
improved logging in FilesystemStorage
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 16 Sep 2016 11:53:17 +0200 |
parents | fabf7820d1f1 |
children | 1824a02e0951 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
0 | 34 #include "ServerIndex.h" |
35 | |
6 | 36 #ifndef NOMINMAX |
2 | 37 #define NOMINMAX |
6 | 38 #endif |
39 | |
1198 | 40 #include "ServerIndexChange.h" |
8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
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43 #include "ServerToolbox.h" |
0 | 44 #include "../Core/Toolbox.h" |
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45 #include "../Core/Logging.h" |
0 | 46 #include "../Core/Uuid.h" |
47 #include "../Core/DicomFormat/DicomArray.h" | |
1747 | 48 #include "Search/LookupIdentifierQuery.h" |
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49 #include "Search/LookupResource.h" |
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50 |
0 | 51 #include "FromDcmtkBridge.h" |
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52 #include "ServerContext.h" |
1822 | 53 #include "DicomInstanceToStore.h" |
0 | 54 |
55 #include <boost/lexical_cast.hpp> | |
56 #include <stdio.h> | |
57 | |
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58 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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59 |
62 | 60 namespace Orthanc |
0 | 61 { |
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62 class ServerIndex::Listener : public IDatabaseListener |
0 | 63 { |
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64 private: |
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65 struct FileToRemove |
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66 { |
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67 private: |
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68 std::string uuid_; |
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69 FileContentType type_; |
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70 |
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71 public: |
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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73 type_(info.GetContentType()) |
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74 { |
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75 } |
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76 |
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77 const std::string& GetUuid() const |
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78 { |
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79 return uuid_; |
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80 } |
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81 |
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82 FileContentType GetContentType() const |
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83 { |
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84 return type_; |
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85 } |
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86 }; |
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87 |
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88 ServerContext& context_; |
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89 bool hasRemainingLevel_; |
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90 ResourceType remainingType_; |
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91 std::string remainingPublicId_; |
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92 std::list<FileToRemove> pendingFilesToRemove_; |
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93 std::list<ServerIndexChange> pendingChanges_; |
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94 uint64_t sizeOfFilesToRemove_; |
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95 bool insideTransaction_; |
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96 |
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97 void Reset() |
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98 { |
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99 sizeOfFilesToRemove_ = 0; |
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100 hasRemainingLevel_ = false; |
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101 pendingFilesToRemove_.clear(); |
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102 pendingChanges_.clear(); |
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103 } |
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104 |
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105 public: |
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106 Listener(ServerContext& context) : context_(context), |
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107 insideTransaction_(false) |
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108 { |
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109 Reset(); |
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110 assert(ResourceType_Patient < ResourceType_Study && |
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111 ResourceType_Study < ResourceType_Series && |
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112 ResourceType_Series < ResourceType_Instance); |
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113 } |
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114 |
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115 void StartTransaction() |
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116 { |
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117 Reset(); |
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118 insideTransaction_ = true; |
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119 } |
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120 |
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121 void EndTransaction() |
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122 { |
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123 insideTransaction_ = false; |
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124 } |
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125 |
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126 uint64_t GetSizeOfFilesToRemove() |
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127 { |
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128 return sizeOfFilesToRemove_; |
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129 } |
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130 |
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131 void CommitFilesToRemove() |
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132 { |
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133 for (std::list<FileToRemove>::const_iterator |
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134 it = pendingFilesToRemove_.begin(); |
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135 it != pendingFilesToRemove_.end(); ++it) |
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136 { |
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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138 } |
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139 } |
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140 |
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141 void CommitChanges() |
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142 { |
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143 for (std::list<ServerIndexChange>::const_iterator |
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144 it = pendingChanges_.begin(); |
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145 it != pendingChanges_.end(); ++it) |
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146 { |
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147 context_.SignalChange(*it); |
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148 } |
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149 } |
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150 |
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151 virtual void SignalRemainingAncestor(ResourceType parentType, |
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152 const std::string& publicId) |
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153 { |
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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155 |
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156 if (hasRemainingLevel_) |
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157 { |
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158 if (parentType < remainingType_) |
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159 { |
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160 remainingType_ = parentType; |
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161 remainingPublicId_ = publicId; |
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162 } |
1158 | 163 } |
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164 else |
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165 { |
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166 hasRemainingLevel_ = true; |
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167 remainingType_ = parentType; |
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168 remainingPublicId_ = publicId; |
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169 } |
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170 } |
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171 |
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172 virtual void SignalFileDeleted(const FileInfo& info) |
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173 { |
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174 assert(Toolbox::IsUuid(info.GetUuid())); |
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175 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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176 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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177 } |
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178 |
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179 virtual void SignalChange(const ServerIndexChange& change) |
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180 { |
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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182 << EnumerationToString(change.GetResourceType()) << ": " |
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183 << EnumerationToString(change.GetChangeType()); |
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184 |
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185 if (insideTransaction_) |
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186 { |
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187 pendingChanges_.push_back(change); |
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188 } |
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189 else |
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190 { |
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191 context_.SignalChange(change); |
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192 } |
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193 } |
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194 |
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195 bool HasRemainingLevel() const |
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196 { |
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197 return hasRemainingLevel_; |
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198 } |
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199 |
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200 ResourceType GetRemainingType() const |
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201 { |
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202 assert(HasRemainingLevel()); |
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203 return remainingType_; |
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204 } |
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205 |
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206 const std::string& GetRemainingPublicId() const |
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207 { |
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208 assert(HasRemainingLevel()); |
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209 return remainingPublicId_; |
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210 } |
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211 }; |
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213 | |
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214 class ServerIndex::Transaction |
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215 { |
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216 private: |
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217 ServerIndex& index_; |
1235 | 218 std::auto_ptr<SQLite::ITransaction> transaction_; |
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219 bool isCommitted_; |
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220 |
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221 public: |
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222 Transaction(ServerIndex& index) : |
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223 index_(index), |
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224 isCommitted_(false) |
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225 { |
1247 | 226 transaction_.reset(index_.db_.StartTransaction()); |
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227 transaction_->Begin(); |
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228 |
1270 | 229 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
230 | |
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231 index_.listener_->StartTransaction(); |
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232 } |
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233 |
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234 ~Transaction() |
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235 { |
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236 index_.listener_->EndTransaction(); |
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237 |
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238 if (!isCommitted_) |
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239 { |
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240 transaction_->Rollback(); |
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241 } |
278
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242 } |
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243 |
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244 void Commit(uint64_t sizeOfAddedFiles) |
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245 { |
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246 if (!isCommitted_) |
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247 { |
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248 transaction_->Commit(); |
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249 |
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250 // We can remove the files once the SQLite transaction has |
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251 // been successfully committed. Some files might have to be |
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252 // deleted because of recycling. |
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253 index_.listener_->CommitFilesToRemove(); |
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254 |
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255 index_.currentStorageSize_ += sizeOfAddedFiles; |
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256 |
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257 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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258 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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259 |
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260 // Send all the pending changes to the Orthanc plugins |
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261 index_.listener_->CommitChanges(); |
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262 |
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263 isCommitted_ = true; |
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264 } |
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265 } |
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266 }; |
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267 |
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268 |
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269 class ServerIndex::UnstableResourcePayload |
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270 { |
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271 private: |
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272 ResourceType type_; |
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273 std::string publicId_; |
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274 boost::posix_time::ptime time_; |
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275 |
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276 public: |
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277 UnstableResourcePayload() : type_(ResourceType_Instance) |
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278 { |
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279 } |
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280 |
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281 UnstableResourcePayload(Orthanc::ResourceType type, |
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282 const std::string& publicId) : |
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283 type_(type), |
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284 publicId_(publicId) |
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285 { |
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286 time_ = boost::posix_time::second_clock::local_time(); |
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287 } |
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288 |
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289 unsigned int GetAge() const |
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290 { |
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291 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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292 } |
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293 |
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294 ResourceType GetResourceType() const |
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295 { |
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296 return type_; |
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297 } |
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298 |
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299 const std::string& GetPublicId() const |
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300 { |
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301 return publicId_; |
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302 } |
511
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303 }; |
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304 |
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305 |
212 | 306 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 307 const std::string& uuid, |
202 | 308 ResourceType expectedType) |
0 | 309 { |
206
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310 boost::mutex::scoped_lock lock(mutex_); |
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311 |
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312 Transaction t(*this); |
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313 |
202 | 314 int64_t id; |
315 ResourceType type; | |
1294 | 316 if (!db_.LookupResource(id, type, uuid) || |
202 | 317 expectedType != type) |
0 | 318 { |
319 return false; | |
320 } | |
202 | 321 |
1247 | 322 db_.DeleteResource(id); |
0 | 323 |
202 | 324 if (listener_->HasRemainingLevel()) |
0 | 325 { |
202 | 326 ResourceType type = listener_->GetRemainingType(); |
327 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 328 |
329 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 330 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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331 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 332 target["RemainingAncestor"]["ID"] = uuid; |
333 } | |
334 else | |
335 { | |
336 target["RemainingAncestor"] = Json::nullValue; | |
337 } | |
338 | |
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339 t.Commit(0); |
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340 |
0 | 341 return true; |
342 } | |
343 | |
344 | |
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345 void ServerIndex::FlushThread(ServerIndex* that) |
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346 { |
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347 // By default, wait for 10 seconds before flushing |
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348 unsigned int sleep = 10; |
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349 |
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350 try |
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351 { |
744 | 352 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 353 std::string sleepString; |
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354 |
1247 | 355 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 356 Toolbox::IsInteger(sleepString)) |
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357 { |
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358 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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359 } |
511
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360 } |
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361 catch (boost::bad_lexical_cast&) |
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362 { |
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363 } |
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364 |
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365 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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366 |
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367 unsigned int count = 0; |
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368 |
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369 while (!that->done_) |
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370 { |
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371 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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372 count++; |
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373 if (count < sleep) |
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374 { |
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375 continue; |
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376 } |
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377 |
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378 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 379 that->db_.FlushToDisk(); |
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380 count = 0; |
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381 } |
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382 |
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383 LOG(INFO) << "Stopping the database flushing thread"; |
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384 } |
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385 |
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386 |
1247 | 387 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 388 int64_t series, |
389 const DicomMap& dicomSummary) | |
390 { | |
391 try | |
392 { | |
656 | 393 const DicomValue* value; |
394 const DicomValue* value2; | |
395 | |
433 | 396 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
397 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
398 { | |
399 // Patch for series with temporal positions thanks to Will Ryder | |
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400 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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401 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 402 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
403 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
404 } | |
405 | |
406 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
407 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
408 { | |
409 // Support of Cardio-PET images | |
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410 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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411 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 412 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
413 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
414 } | |
415 | |
416 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
417 { | |
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418 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 419 } |
420 } | |
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421 catch (OrthancException&) |
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422 { |
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423 } |
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424 catch (boost::bad_lexical_cast&) |
433 | 425 { |
426 } | |
427 } | |
428 | |
429 | |
1237 | 430 |
431 | |
1238 | 432 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 433 int64_t id, |
434 MetadataType type) | |
435 { | |
1238 | 436 std::string s; |
1247 | 437 if (!db_.LookupMetadata(s, id, type)) |
1237 | 438 { |
439 return false; | |
440 } | |
441 | |
442 try | |
443 { | |
1238 | 444 result = boost::lexical_cast<int64_t>(s); |
1237 | 445 return true; |
446 } | |
447 catch (boost::bad_lexical_cast&) | |
448 { | |
449 return false; | |
450 } | |
451 } | |
452 | |
453 | |
1297 | 454 void ServerIndex::LogChange(int64_t internalId, |
455 ChangeType changeType, | |
456 ResourceType resourceType, | |
457 const std::string& publicId) | |
458 { | |
459 ServerIndexChange change(changeType, resourceType, publicId); | |
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460 |
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461 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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462 { |
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463 db_.LogChange(internalId, change); |
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464 } |
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465 |
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466 assert(listener_.get() != NULL); |
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467 listener_->SignalChange(change); |
1297 | 468 } |
469 | |
1237 | 470 |
471 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
472 { | |
473 std::string oldValue; | |
474 | |
1247 | 475 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 476 { |
477 uint64_t oldNumber; | |
478 | |
479 try | |
480 { | |
481 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 482 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 483 return oldNumber + 1; |
484 } | |
485 catch (boost::bad_lexical_cast&) | |
486 { | |
487 throw OrthancException(ErrorCode_InternalError); | |
488 } | |
489 } | |
490 else | |
491 { | |
492 // Initialize the sequence at "1" | |
1247 | 493 db_.SetGlobalProperty(property, "1"); |
1237 | 494 return 1; |
495 } | |
496 } | |
497 | |
498 | |
499 | |
1299 | 500 int64_t ServerIndex::CreateResource(const std::string& publicId, |
501 ResourceType type) | |
502 { | |
503 int64_t id = db_.CreateResource(publicId, type); | |
504 | |
505 ChangeType changeType; | |
506 switch (type) | |
507 { | |
508 case ResourceType_Patient: | |
509 changeType = ChangeType_NewPatient; | |
510 break; | |
511 | |
512 case ResourceType_Study: | |
513 changeType = ChangeType_NewStudy; | |
514 break; | |
515 | |
516 case ResourceType_Series: | |
517 changeType = ChangeType_NewSeries; | |
518 break; | |
519 | |
520 case ResourceType_Instance: | |
521 changeType = ChangeType_NewInstance; | |
522 break; | |
523 | |
524 default: | |
525 throw OrthancException(ErrorCode_InternalError); | |
526 } | |
527 | |
528 ServerIndexChange change(changeType, type, publicId); | |
529 db_.LogChange(id, change); | |
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530 |
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531 assert(listener_.get() != NULL); |
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532 listener_->SignalChange(change); |
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533 |
1299 | 534 return id; |
535 } | |
536 | |
1286 | 537 |
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538 ServerIndex::ServerIndex(ServerContext& context, |
1247 | 539 IDatabaseWrapper& db) : |
511
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540 done_(false), |
1247 | 541 db_(db), |
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542 maximumStorageSize_(0), |
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543 maximumPatients_(0) |
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544 { |
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545 listener_.reset(new Listener(context)); |
1247 | 546 db_.SetListener(*listener_); |
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547 |
1247 | 548 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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549 |
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550 // Initial recycling if the parameters have changed since the last |
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551 // execution of Orthanc |
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552 StandaloneRecycling(); |
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553 |
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554 if (db.HasFlushToDisk()) |
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555 { |
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556 flushThread_ = boost::thread(FlushThread, this); |
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557 } |
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558 |
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559 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
206
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560 } |
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561 |
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562 |
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563 |
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564 ServerIndex::~ServerIndex() |
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565 { |
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566 if (!done_) |
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567 { |
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568 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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569 Stop(); |
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570 } |
0 | 571 } |
572 | |
573 | |
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574 |
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575 void ServerIndex::Stop() |
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576 { |
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577 if (!done_) |
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578 { |
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579 done_ = true; |
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580 |
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581 if (db_.HasFlushToDisk() && |
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582 flushThread_.joinable()) |
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583 { |
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584 flushThread_.join(); |
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585 } |
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586 |
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587 if (unstableResourcesMonitorThread_.joinable()) |
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588 { |
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589 unstableResourcesMonitorThread_.join(); |
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590 } |
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591 } |
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592 } |
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593 |
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594 |
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595 |
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596 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 597 DicomInstanceToStore& instanceToStore, |
598 const Attachments& attachments) | |
0 | 599 { |
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600 boost::mutex::scoped_lock lock(mutex_); |
0 | 601 |
1822 | 602 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
603 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
604 | |
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605 instanceMetadata.clear(); |
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606 |
1822 | 607 DicomInstanceHasher hasher(instanceToStore.GetSummary()); |
0 | 608 |
609 try | |
610 { | |
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611 Transaction t(*this); |
0 | 612 |
202 | 613 // Do nothing if the instance already exists |
0 | 614 { |
432 | 615 ResourceType type; |
616 int64_t tmp; | |
1294 | 617 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
432 | 618 { |
619 assert(type == ResourceType_Instance); | |
1247 | 620 db_.GetAllMetadata(instanceMetadata, tmp); |
432 | 621 return StoreStatus_AlreadyStored; |
622 } | |
0 | 623 } |
624 | |
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625 // Ensure there is enough room in the storage for the new instance |
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626 uint64_t instanceSize = 0; |
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627 for (Attachments::const_iterator it = attachments.begin(); |
656 | 628 it != attachments.end(); ++it) |
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629 { |
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630 instanceSize += it->GetCompressedSize(); |
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631 } |
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632 |
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633 Recycle(instanceSize, hasher.HashPatient()); |
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634 |
202 | 635 // Create the instance |
1299 | 636 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
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637 Toolbox::SetMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 638 |
432 | 639 // Detect up to which level the patient/study/series/instance |
640 // hierarchy must be created | |
641 int64_t patient = -1, study = -1, series = -1; | |
642 bool isNewPatient = false; | |
643 bool isNewStudy = false; | |
644 bool isNewSeries = false; | |
645 | |
0 | 646 { |
432 | 647 ResourceType dummy; |
648 | |
1294 | 649 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
432 | 650 { |
651 assert(dummy == ResourceType_Series); | |
652 // The patient, the study and the series already exist | |
653 | |
1294 | 654 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
655 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
432 | 656 assert(ok); |
657 } | |
1294 | 658 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
432 | 659 { |
660 assert(dummy == ResourceType_Study); | |
661 | |
662 // New series: The patient and the study already exist | |
663 isNewSeries = true; | |
664 | |
1294 | 665 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
432 | 666 assert(ok); |
667 } | |
1294 | 668 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
432 | 669 { |
670 assert(dummy == ResourceType_Patient); | |
671 | |
672 // New study and series: The patient already exist | |
673 isNewStudy = true; | |
674 isNewSeries = true; | |
675 } | |
676 else | |
677 { | |
678 // New patient, study and series: Nothing exists | |
679 isNewPatient = true; | |
680 isNewStudy = true; | |
681 isNewSeries = true; | |
682 } | |
683 } | |
684 | |
685 // Create the series if needed | |
686 if (isNewSeries) | |
687 { | |
1299 | 688 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
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689 Toolbox::SetMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 690 } |
202 | 691 |
432 | 692 // Create the study if needed |
693 if (isNewStudy) | |
694 { | |
1299 | 695 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
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696 Toolbox::SetMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 697 } |
698 | |
699 // Create the patient if needed | |
700 if (isNewPatient) | |
701 { | |
1299 | 702 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
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703 Toolbox::SetMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 704 } |
202 | 705 |
432 | 706 // Create the parent-to-child links |
1247 | 707 db_.AttachChild(series, instance); |
432 | 708 |
709 if (isNewSeries) | |
710 { | |
1247 | 711 db_.AttachChild(study, series); |
0 | 712 } |
432 | 713 |
714 if (isNewStudy) | |
0 | 715 { |
1247 | 716 db_.AttachChild(patient, study); |
0 | 717 } |
718 | |
432 | 719 // Sanity checks |
720 assert(patient != -1); | |
721 assert(study != -1); | |
722 assert(series != -1); | |
723 assert(instance != -1); | |
724 | |
202 | 725 // Attach the files to the newly created instance |
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726 for (Attachments::const_iterator it = attachments.begin(); |
656 | 727 it != attachments.end(); ++it) |
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728 { |
1247 | 729 db_.AddAttachment(instance, *it); |
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730 } |
202 | 731 |
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732 // Attach the user-specified metadata |
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733 for (MetadataMap::const_iterator |
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734 it = metadata.begin(); it != metadata.end(); ++it) |
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735 { |
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736 switch (it->first.first) |
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737 { |
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738 case ResourceType_Patient: |
1247 | 739 db_.SetMetadata(patient, it->first.second, it->second); |
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740 break; |
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741 |
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742 case ResourceType_Study: |
1247 | 743 db_.SetMetadata(study, it->first.second, it->second); |
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744 break; |
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745 |
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746 case ResourceType_Series: |
1247 | 747 db_.SetMetadata(series, it->first.second, it->second); |
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748 break; |
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749 |
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750 case ResourceType_Instance: |
1247 | 751 db_.SetMetadata(instance, it->first.second, it->second); |
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752 instanceMetadata[it->first.second] = it->second; |
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753 break; |
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754 |
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755 default: |
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756 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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757 } |
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758 } |
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759 |
1004
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DicomInstanceToStore
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|
760 // Attach the auto-computed metadata for the patient/study/series levels |
432 | 761 std::string now = Toolbox::GetNowIsoString(); |
1247 | 762 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
763 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
764 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
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|
765 |
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766 // Attach the auto-computed metadata for the instance level, |
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|
767 // reflecting these additions into the input metadata map |
1247 | 768 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
1006
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diff
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769 instanceMetadata[MetadataType_Instance_ReceptionDate] = now; |
202 | 770 |
1822 | 771 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, instanceToStore.GetRemoteAet()); |
772 instanceMetadata[MetadataType_Instance_RemoteAet] = instanceToStore.GetRemoteAet(); | |
1004
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DicomInstanceToStore
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diff
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|
773 |
1823
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"Origin" metadata for the instances
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diff
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|
774 { |
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|
775 std::string s = EnumerationToString(instanceToStore.GetRequestOrigin()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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776 db_.SetMetadata(instance, MetadataType_Instance_Origin, s); |
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|
777 instanceMetadata[MetadataType_Instance_Origin] = s; |
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778 } |
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|
779 |
202 | 780 const DicomValue* value; |
781 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
782 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 783 { |
1737
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784 if (!value->IsNull() && |
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785 !value->IsBinary()) |
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786 { |
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|
787 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
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diff
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|
788 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->GetContent(); |
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diff
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|
789 } |
0 | 790 } |
791 | |
1004
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DicomInstanceToStore
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diff
changeset
|
792 // Check whether the series of this new instance is now completed |
202 | 793 if (isNewSeries) |
794 { | |
1247 | 795 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 796 } |
797 | |
205
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|
798 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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diff
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|
799 if (seriesStatus == SeriesStatus_Complete) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
800 { |
1237 | 801 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
205
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diff
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|
802 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
803 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
804 // Mark the parent resources of this instance as unstable |
1177
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
805 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
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|
806 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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diff
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|
807 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
511
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|
808 |
278
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|
809 t.Commit(instanceSize); |
268
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264
diff
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|
810 |
0 | 811 return StoreStatus_Success; |
812 } | |
62 | 813 catch (OrthancException& e) |
0 | 814 { |
1247 | 815 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 816 } |
817 | |
818 return StoreStatus_Failure; | |
819 } | |
820 | |
821 | |
238 | 822 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 823 { |
206
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diff
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|
824 boost::mutex::scoped_lock lock(mutex_); |
238 | 825 target = Json::objectValue; |
0 | 826 |
278
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|
827 uint64_t cs = currentStorageSize_; |
1247 | 828 assert(cs == db_.GetTotalCompressedSize()); |
829 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
830 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 831 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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|
832 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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|
833 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 834 |
1247 | 835 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
836 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
837 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
838 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 839 } |
840 | |
187
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|
841 |
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|
842 |
585 | 843 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 844 { |
845 // Get the expected number of instances in this series (from the metadata) | |
1238 | 846 int64_t expected; |
847 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 848 { |
849 return SeriesStatus_Unknown; | |
850 } | |
851 | |
852 // Loop over the instances of this series | |
853 std::list<int64_t> children; | |
1247 | 854 db_.GetChildrenInternalId(children, id); |
199 | 855 |
1238 | 856 std::set<int64_t> instances; |
199 | 857 for (std::list<int64_t>::const_iterator |
656 | 858 it = children.begin(); it != children.end(); ++it) |
199 | 859 { |
860 // Get the index of this instance in the series | |
1238 | 861 int64_t index; |
862 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 863 { |
864 return SeriesStatus_Unknown; | |
865 } | |
866 | |
656 | 867 if (!(index > 0 && index <= expected)) |
199 | 868 { |
869 // Out-of-range instance index | |
870 return SeriesStatus_Inconsistent; | |
871 } | |
872 | |
873 if (instances.find(index) != instances.end()) | |
874 { | |
875 // Twice the same instance index | |
876 return SeriesStatus_Inconsistent; | |
877 } | |
878 | |
879 instances.insert(index); | |
880 } | |
881 | |
1238 | 882 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 883 { |
884 return SeriesStatus_Complete; | |
885 } | |
886 else | |
887 { | |
888 return SeriesStatus_Missing; | |
889 } | |
890 } | |
891 | |
892 | |
202 | 893 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
894 int64_t resourceId, |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
895 ResourceType resourceType) |
198
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diff
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|
896 { |
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parents:
197
diff
changeset
|
897 DicomMap tags; |
1247 | 898 db_.GetMainDicomTags(tags, resourceId); |
1676
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
899 |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
900 if (resourceType == ResourceType_Study) |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
901 { |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
902 DicomMap t1, t2; |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
903 tags.ExtractStudyInformation(t1); |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
904 tags.ExtractPatientInformation(t2); |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
905 |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
906 target["MainDicomTags"] = Json::objectValue; |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
907 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
908 |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
909 target["PatientMainDicomTags"] = Json::objectValue; |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
910 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
911 } |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
912 else |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
913 { |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
914 target["MainDicomTags"] = Json::objectValue; |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
915 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
916 } |
198
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diff
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|
917 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
918 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
919 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 920 const std::string& publicId, |
921 ResourceType expectedType) | |
198
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922 { |
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diff
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|
923 result = Json::objectValue; |
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diff
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|
924 |
206
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flush to disk thread
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diff
changeset
|
925 boost::mutex::scoped_lock lock(mutex_); |
199 | 926 |
198
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diff
changeset
|
927 // Lookup for the requested resource |
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diff
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|
928 int64_t id; |
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diff
changeset
|
929 ResourceType type; |
1294 | 930 if (!db_.LookupResource(id, type, publicId) || |
199 | 931 type != expectedType) |
198
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diff
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|
932 { |
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diff
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|
933 return false; |
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934 } |
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935 |
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|
936 // Find the parent resource (if it exists) |
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diff
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|
937 if (type != ResourceType_Patient) |
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diff
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|
938 { |
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diff
changeset
|
939 int64_t parentId; |
1247 | 940 if (!db_.LookupParent(parentId, id)) |
198
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|
941 { |
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changeset
|
942 throw OrthancException(ErrorCode_InternalError); |
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943 } |
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|
944 |
1247 | 945 std::string parent = db_.GetPublicId(parentId); |
198
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946 |
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|
947 switch (type) |
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|
948 { |
269
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changeset
|
949 case ResourceType_Study: |
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diff
changeset
|
950 result["ParentPatient"] = parent; |
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|
951 break; |
198
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952 |
269
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|
953 case ResourceType_Series: |
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changeset
|
954 result["ParentStudy"] = parent; |
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diff
changeset
|
955 break; |
198
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|
956 |
269
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|
957 case ResourceType_Instance: |
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|
958 result["ParentSeries"] = parent; |
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diff
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|
959 break; |
198
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diff
changeset
|
960 |
269
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diff
changeset
|
961 default: |
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|
962 throw OrthancException(ErrorCode_InternalError); |
198
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|
963 } |
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|
964 } |
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|
965 |
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|
966 // List the children resources |
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diff
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|
967 std::list<std::string> children; |
1247 | 968 db_.GetChildrenPublicId(children, id); |
198
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diff
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|
969 |
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diff
changeset
|
970 if (type != ResourceType_Instance) |
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diff
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|
971 { |
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diff
changeset
|
972 Json::Value c = Json::arrayValue; |
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diff
changeset
|
973 |
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197
diff
changeset
|
974 for (std::list<std::string>::const_iterator |
656 | 975 it = children.begin(); it != children.end(); ++it) |
198
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changeset
|
976 { |
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diff
changeset
|
977 c.append(*it); |
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diff
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|
978 } |
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diff
changeset
|
979 |
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diff
changeset
|
980 switch (type) |
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diff
changeset
|
981 { |
269
f6fdf5abe751
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diff
changeset
|
982 case ResourceType_Patient: |
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diff
changeset
|
983 result["Studies"] = c; |
f6fdf5abe751
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268
diff
changeset
|
984 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
985 |
269
f6fdf5abe751
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268
diff
changeset
|
986 case ResourceType_Study: |
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diff
changeset
|
987 result["Series"] = c; |
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parents:
268
diff
changeset
|
988 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
989 |
269
f6fdf5abe751
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diff
changeset
|
990 case ResourceType_Series: |
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diff
changeset
|
991 result["Instances"] = c; |
f6fdf5abe751
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268
diff
changeset
|
992 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
993 |
269
f6fdf5abe751
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268
diff
changeset
|
994 default: |
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diff
changeset
|
995 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
996 } |
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diff
changeset
|
997 } |
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197
diff
changeset
|
998 |
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diff
changeset
|
999 // Set the resource type |
663cc6c46d0a
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diff
changeset
|
1000 switch (type) |
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diff
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|
1001 { |
269
f6fdf5abe751
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268
diff
changeset
|
1002 case ResourceType_Patient: |
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268
diff
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|
1003 result["Type"] = "Patient"; |
f6fdf5abe751
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268
diff
changeset
|
1004 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
1005 |
269
f6fdf5abe751
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268
diff
changeset
|
1006 case ResourceType_Study: |
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parents:
268
diff
changeset
|
1007 result["Type"] = "Study"; |
f6fdf5abe751
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parents:
268
diff
changeset
|
1008 break; |
199 | 1009 |
269
f6fdf5abe751
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268
diff
changeset
|
1010 case ResourceType_Series: |
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268
diff
changeset
|
1011 { |
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268
diff
changeset
|
1012 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1013 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1014 |
1238 | 1015 int64_t i; |
1237 | 1016 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1017 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
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268
diff
changeset
|
1018 else |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
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268
diff
changeset
|
1019 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1020 |
269
f6fdf5abe751
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268
diff
changeset
|
1021 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1022 } |
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1023 |
269
f6fdf5abe751
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268
diff
changeset
|
1024 case ResourceType_Instance: |
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diff
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|
1025 { |
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diff
changeset
|
1026 result["Type"] = "Instance"; |
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diff
changeset
|
1027 |
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268
diff
changeset
|
1028 FileInfo attachment; |
1247 | 1029 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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268
diff
changeset
|
1030 { |
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268
diff
changeset
|
1031 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1032 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1033 |
269
f6fdf5abe751
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268
diff
changeset
|
1034 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
1035 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1036 |
1238 | 1037 int64_t i; |
1237 | 1038 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1039 result["IndexInSeries"] = static_cast<int>(i); |
269
f6fdf5abe751
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diff
changeset
|
1040 else |
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268
diff
changeset
|
1041 result["IndexInSeries"] = Json::nullValue; |
198
663cc6c46d0a
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197
diff
changeset
|
1042 |
269
f6fdf5abe751
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268
diff
changeset
|
1043 break; |
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268
diff
changeset
|
1044 } |
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268
diff
changeset
|
1045 |
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268
diff
changeset
|
1046 default: |
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268
diff
changeset
|
1047 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
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|
1048 } |
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|
1049 |
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diff
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|
1050 // Record the remaining information |
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197
diff
changeset
|
1051 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1052 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1053 |
315 | 1054 std::string tmp; |
1055 | |
1247 | 1056 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1057 { |
315 | 1058 result["AnonymizedFrom"] = tmp; |
1236 | 1059 } |
315 | 1060 |
1247 | 1061 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1062 { |
315 | 1063 result["ModifiedFrom"] = tmp; |
1236 | 1064 } |
315 | 1065 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1066 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1067 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1068 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1069 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1070 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1071 |
1247 | 1072 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1073 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1074 result["LastUpdate"] = tmp; |
1236 | 1075 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1076 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1077 |
198
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diff
changeset
|
1078 return true; |
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diff
changeset
|
1079 } |
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diff
changeset
|
1080 |
0 | 1081 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1082 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1083 const std::string& instanceUuid, |
233 | 1084 FileContentType contentType) |
0 | 1085 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1086 boost::mutex::scoped_lock lock(mutex_); |
0 | 1087 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1088 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1089 ResourceType type; |
1294 | 1090 if (!db_.LookupResource(id, type, instanceUuid)) |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1091 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1092 throw OrthancException(ErrorCode_UnknownResource); |
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1093 } |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1094 |
1247 | 1095 if (db_.LookupAttachment(attachment, id, contentType)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1096 { |
233 | 1097 assert(attachment.GetContentType() == contentType); |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1098 return true; |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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1099 } |
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1100 else |
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1101 { |
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1102 return false; |
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1103 } |
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1104 } |
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1105 |
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1106 |
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1107 |
1354 | 1108 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1109 ResourceType resourceType) |
0 | 1110 { |
1357 | 1111 boost::mutex::scoped_lock lock(mutex_); |
1112 db_.GetAllPublicIds(target, resourceType); | |
0 | 1113 } |
1114 | |
1115 | |
1509
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1116 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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1117 ResourceType resourceType, |
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1118 size_t since, |
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1119 size_t limit) |
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1120 { |
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1121 if (limit == 0) |
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1122 { |
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1123 target.clear(); |
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1124 return; |
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1125 } |
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1126 |
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1127 boost::mutex::scoped_lock lock(mutex_); |
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1128 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1129 } |
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1130 |
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1131 |
1244 | 1132 template <typename T> |
1133 static void FormatLog(Json::Value& target, | |
1134 const std::list<T>& log, | |
1135 const std::string& name, | |
1136 bool done, | |
1137 int64_t since) | |
1240 | 1138 { |
1139 Json::Value items = Json::arrayValue; | |
1244 | 1140 for (typename std::list<T>::const_iterator |
1304 | 1141 it = log.begin(); it != log.end(); ++it) |
1240 | 1142 { |
1143 Json::Value item; | |
1144 it->Format(item); | |
1145 items.append(item); | |
1146 } | |
1147 | |
1148 target = Json::objectValue; | |
1244 | 1149 target[name] = items; |
1240 | 1150 target["Done"] = done; |
1151 | |
1305 | 1152 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1153 target["Last"] = static_cast<int>(last); |
1154 } | |
1155 | |
1156 | |
1247 | 1157 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1158 int64_t since, |
0 | 1159 unsigned int maxResults) |
1160 { | |
1240 | 1161 std::list<ServerIndexChange> changes; |
1162 bool done; | |
1163 | |
1164 { | |
1165 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1166 db_.GetChanges(changes, done, since, maxResults); |
1240 | 1167 } |
1168 | |
1244 | 1169 FormatLog(target, changes, "Changes", done, since); |
237
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1170 } |
0 | 1171 |
1240 | 1172 |
1247 | 1173 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1174 { |
1240 | 1175 std::list<ServerIndexChange> changes; |
1176 | |
1177 { | |
1178 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1179 db_.GetLastChange(changes); |
1240 | 1180 } |
1181 | |
1244 | 1182 FormatLog(target, changes, "Changes", true, 0); |
0 | 1183 } |
231 | 1184 |
1240 | 1185 |
231 | 1186 void ServerIndex::LogExportedResource(const std::string& publicId, |
1187 const std::string& remoteModality) | |
1188 { | |
1189 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1190 Transaction transaction(*this); |
231 | 1191 |
1192 int64_t id; | |
1193 ResourceType type; | |
1294 | 1194 if (!db_.LookupResource(id, type, publicId)) |
231 | 1195 { |
1196 throw OrthancException(ErrorCode_InternalError); | |
1197 } | |
1198 | |
1199 std::string patientId; | |
1200 std::string studyInstanceUid; | |
1201 std::string seriesInstanceUid; | |
1202 std::string sopInstanceUid; | |
1203 | |
1204 int64_t currentId = id; | |
1205 ResourceType currentType = type; | |
1206 | |
1207 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1208 bool done = false; | |
1209 while (!done) | |
1210 { | |
1211 DicomMap map; | |
1247 | 1212 db_.GetMainDicomTags(map, currentId); |
231 | 1213 |
1214 switch (currentType) | |
1215 { | |
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1216 case ResourceType_Patient: |
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1217 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1218 done = true; |
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1219 break; |
231 | 1220 |
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1221 case ResourceType_Study: |
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1222 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1223 currentType = ResourceType_Patient; |
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1224 break; |
231 | 1225 |
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1226 case ResourceType_Series: |
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1227 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1228 currentType = ResourceType_Study; |
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1229 break; |
231 | 1230 |
269
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1231 case ResourceType_Instance: |
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1232 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1233 currentType = ResourceType_Series; |
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1234 break; |
231 | 1235 |
269
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1236 default: |
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1237 throw OrthancException(ErrorCode_InternalError); |
231 | 1238 } |
1239 | |
1240 // If we have not reached the Patient level, find the parent of | |
1241 // the current resource | |
1242 if (!done) | |
1243 { | |
1247 | 1244 bool ok = db_.LookupParent(currentId, currentId); |
375
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1245 assert(ok); |
231 | 1246 } |
1247 } | |
1248 | |
1246 | 1249 ExportedResource resource(-1, |
1250 type, | |
1251 publicId, | |
1252 remoteModality, | |
1253 Toolbox::GetNowIsoString(), | |
1254 patientId, | |
1255 studyInstanceUid, | |
1256 seriesInstanceUid, | |
1257 sopInstanceUid); | |
1310
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1258 |
1247 | 1259 db_.LogExportedResource(resource); |
1310
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|
1260 transaction.Commit(0); |
231 | 1261 } |
1262 | |
1263 | |
1247 | 1264 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1265 int64_t since, |
1266 unsigned int maxResults) | |
1267 { | |
1244 | 1268 std::list<ExportedResource> exported; |
1269 bool done; | |
1270 | |
1271 { | |
1272 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1273 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1274 } |
1275 | |
1276 FormatLog(target, exported, "Exports", done, since); | |
231 | 1277 } |
237
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1278 |
1244 | 1279 |
1247 | 1280 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1281 { |
1244 | 1282 std::list<ExportedResource> exported; |
1283 | |
1284 { | |
1285 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1286 db_.GetLastExportedResource(exported); |
1244 | 1287 } |
1288 | |
1289 FormatLog(target, exported, "Exports", true, 0); | |
237
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1290 } |
268
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1291 |
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1292 |
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1293 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1294 { |
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1295 if (maximumStorageSize_ != 0) |
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1296 { |
278
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1297 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1298 assert(db_.GetTotalCompressedSize() == currentSize); |
278
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1299 |
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1300 if (currentSize + instanceSize > maximumStorageSize_) |
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1301 { |
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1302 return true; |
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1303 } |
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1304 } |
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1305 |
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1306 if (maximumPatients_ != 0) |
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1307 { |
1247 | 1308 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1309 if (patientCount > maximumPatients_) |
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1310 { |
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1311 return true; |
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1312 } |
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1313 } |
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1314 |
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1315 return false; |
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1316 } |
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1317 |
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1318 |
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1319 void ServerIndex::Recycle(uint64_t instanceSize, |
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1320 const std::string& newPatientId) |
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1321 { |
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1322 if (!IsRecyclingNeeded(instanceSize)) |
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1323 { |
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1324 return; |
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1325 } |
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1326 |
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1327 // Check whether other DICOM instances from this patient are |
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1328 // already stored |
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1329 int64_t patientToAvoid; |
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1330 ResourceType type; |
1294 | 1331 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1332 |
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1333 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1334 { |
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1335 throw OrthancException(ErrorCode_InternalError); |
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1336 } |
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1337 |
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1338 // Iteratively select patient to remove until there is enough |
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1339 // space in the DICOM store |
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1340 int64_t patientToRecycle; |
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1341 while (true) |
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1342 { |
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1343 // If other instances of this patient are already in the store, |
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1344 // we must avoid to recycle them |
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1345 bool ok = hasPatientToAvoid ? |
1247 | 1346 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1347 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1348 |
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1349 if (!ok) |
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1350 { |
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1351 throw OrthancException(ErrorCode_FullStorage); |
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1352 } |
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1353 |
1331
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1354 VLOG(1) << "Recycling one patient"; |
1247 | 1355 db_.DeleteResource(patientToRecycle); |
269
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1356 |
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1357 if (!IsRecyclingNeeded(instanceSize)) |
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1358 { |
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1359 // OK, we're done |
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1360 break; |
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1361 } |
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1362 } |
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1363 } |
269
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1364 |
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1365 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1366 { |
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1367 boost::mutex::scoped_lock lock(mutex_); |
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1368 maximumPatients_ = count; |
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1369 |
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1370 if (count == 0) |
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1371 { |
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1372 LOG(WARNING) << "No limit on the number of stored patients"; |
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1373 } |
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1374 else |
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1375 { |
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1376 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1377 } |
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1378 |
269
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1379 StandaloneRecycling(); |
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1380 } |
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1381 |
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1382 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1383 { |
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1384 boost::mutex::scoped_lock lock(mutex_); |
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1385 maximumStorageSize_ = size; |
270
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1386 |
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1387 if (size == 0) |
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1388 { |
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1389 LOG(WARNING) << "No limit on the size of the storage area"; |
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1390 } |
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1391 else |
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1392 { |
440
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diff
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|
1393 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1394 } |
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1395 |
269
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1396 StandaloneRecycling(); |
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1397 } |
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1398 |
272
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1399 void ServerIndex::StandaloneRecycling() |
269
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1400 { |
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1401 // WARNING: No mutex here, do not include this as a public method |
278
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1402 Transaction t(*this); |
269
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1403 Recycle(0, ""); |
278
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1404 t.Commit(0); |
269
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1405 } |
272
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1406 |
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1407 |
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1408 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1409 { |
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1410 boost::mutex::scoped_lock lock(mutex_); |
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1411 |
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1412 // Lookup for the requested resource |
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1413 int64_t id; |
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1414 ResourceType type; |
1294 | 1415 if (!db_.LookupResource(id, type, publicId) || |
272
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1416 type != ResourceType_Patient) |
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1417 { |
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1418 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1419 } |
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1420 |
1247 | 1421 return db_.IsProtectedPatient(id); |
272
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1422 } |
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1423 |
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1424 |
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1425 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1426 bool isProtected) |
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1427 { |
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1428 boost::mutex::scoped_lock lock(mutex_); |
1310
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1429 Transaction transaction(*this); |
272
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1430 |
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1431 // Lookup for the requested resource |
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1432 int64_t id; |
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1433 ResourceType type; |
1294 | 1434 if (!db_.LookupResource(id, type, publicId) || |
272
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1435 type != ResourceType_Patient) |
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1436 { |
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1437 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1438 } |
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1439 |
1247 | 1440 db_.SetProtectedPatient(id, isProtected); |
1310
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1441 transaction.Commit(0); |
272
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1442 |
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1443 if (isProtected) |
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1444 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1445 else |
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1446 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1447 } |
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1448 |
304 | 1449 |
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1450 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1451 const std::string& publicId) |
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1452 { |
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1453 result.clear(); |
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1454 |
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1455 boost::mutex::scoped_lock lock(mutex_); |
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1456 |
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|
1457 ResourceType type; |
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1458 int64_t resource; |
1294 | 1459 if (!db_.LookupResource(resource, type, publicId)) |
714
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1460 { |
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1461 throw OrthancException(ErrorCode_UnknownResource); |
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1462 } |
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1463 |
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1464 if (type == ResourceType_Instance) |
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1465 { |
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1466 // An instance cannot have a child |
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1467 throw OrthancException(ErrorCode_BadParameterType); |
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1468 } |
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1469 |
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|
1470 std::list<int64_t> tmp; |
1247 | 1471 db_.GetChildrenInternalId(tmp, resource); |
714
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1472 |
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1473 for (std::list<int64_t>::const_iterator |
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1474 it = tmp.begin(); it != tmp.end(); ++it) |
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1475 { |
1247 | 1476 result.push_back(db_.GetPublicId(*it)); |
714
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1477 } |
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1478 } |
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1479 |
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1480 |
304 | 1481 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1482 const std::string& publicId) | |
1483 { | |
1484 result.clear(); | |
1485 | |
1486 boost::mutex::scoped_lock lock(mutex_); | |
1487 | |
1488 ResourceType type; | |
1489 int64_t top; | |
1294 | 1490 if (!db_.LookupResource(top, type, publicId)) |
304 | 1491 { |
1492 throw OrthancException(ErrorCode_UnknownResource); | |
1493 } | |
1494 | |
1495 if (type == ResourceType_Instance) | |
1496 { | |
1497 // The resource is already an instance: Do not go down the hierarchy | |
1498 result.push_back(publicId); | |
1499 return; | |
1500 } | |
1501 | |
1502 std::stack<int64_t> toExplore; | |
1503 toExplore.push(top); | |
1504 | |
1505 std::list<int64_t> tmp; | |
1506 | |
1507 while (!toExplore.empty()) | |
1508 { | |
1509 // Get the internal ID of the current resource | |
1510 int64_t resource = toExplore.top(); | |
1511 toExplore.pop(); | |
1512 | |
1247 | 1513 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1514 { |
1247 | 1515 result.push_back(db_.GetPublicId(resource)); |
304 | 1516 } |
1517 else | |
1518 { | |
1519 // Tag all the children of this resource as to be explored | |
1247 | 1520 db_.GetChildrenInternalId(tmp, resource); |
304 | 1521 for (std::list<int64_t>::const_iterator |
656 | 1522 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1523 { |
1524 toExplore.push(*it); | |
1525 } | |
1526 } | |
1527 } | |
1528 } | |
1529 | |
306
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1530 |
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1531 void ServerIndex::SetMetadata(const std::string& publicId, |
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1532 MetadataType type, |
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1533 const std::string& value) |
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1534 { |
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1535 boost::mutex::scoped_lock lock(mutex_); |
1773
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1536 Transaction t(*this); |
306
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1537 |
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1538 ResourceType rtype; |
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1539 int64_t id; |
1294 | 1540 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1541 { |
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1542 throw OrthancException(ErrorCode_UnknownResource); |
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1543 } |
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1544 |
1247 | 1545 db_.SetMetadata(id, type, value); |
1773
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1546 |
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1547 if (IsUserMetadata(type)) |
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1548 { |
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1549 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1550 } |
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|
1551 |
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|
1552 t.Commit(0); |
306
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1553 } |
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1554 |
438 | 1555 |
1556 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1557 MetadataType type) | |
1558 { | |
1559 boost::mutex::scoped_lock lock(mutex_); | |
1773
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|
1560 Transaction t(*this); |
438 | 1561 |
1562 ResourceType rtype; | |
1563 int64_t id; | |
1294 | 1564 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1565 { |
1566 throw OrthancException(ErrorCode_UnknownResource); | |
1567 } | |
1568 | |
1247 | 1569 db_.DeleteMetadata(id, type); |
1773
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|
1570 |
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|
1571 if (IsUserMetadata(type)) |
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1572 { |
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|
1573 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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|
1574 } |
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|
1575 |
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|
1576 t.Commit(0); |
438 | 1577 } |
1578 | |
1579 | |
306
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|
1580 bool ServerIndex::LookupMetadata(std::string& target, |
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|
1581 const std::string& publicId, |
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1582 MetadataType type) |
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|
1583 { |
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|
1584 boost::mutex::scoped_lock lock(mutex_); |
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|
1585 |
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|
1586 ResourceType rtype; |
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|
1587 int64_t id; |
1294 | 1588 if (!db_.LookupResource(id, rtype, publicId)) |
306
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|
1589 { |
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|
1590 throw OrthancException(ErrorCode_UnknownResource); |
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|
1591 } |
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1592 |
1247 | 1593 return db_.LookupMetadata(target, id, type); |
306
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1594 } |
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|
1595 |
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1596 |
739 | 1597 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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|
1598 const std::string& publicId) |
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|
1599 { |
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|
1600 boost::mutex::scoped_lock lock(mutex_); |
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|
1601 |
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|
1602 ResourceType rtype; |
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|
1603 int64_t id; |
1294 | 1604 if (!db_.LookupResource(id, rtype, publicId)) |
436
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diff
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|
1605 { |
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diff
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|
1606 throw OrthancException(ErrorCode_UnknownResource); |
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diff
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|
1607 } |
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diff
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|
1608 |
1247 | 1609 db_.ListAvailableMetadata(target, id); |
436
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diff
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|
1610 } |
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|
1611 |
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|
1612 |
697
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|
1613 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1614 const std::string& publicId, |
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|
1615 ResourceType expectedType) |
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|
1616 { |
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|
1617 boost::mutex::scoped_lock lock(mutex_); |
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diff
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|
1618 |
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|
1619 ResourceType type; |
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|
1620 int64_t id; |
1294 | 1621 if (!db_.LookupResource(id, type, publicId) || |
697
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1622 expectedType != type) |
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|
1623 { |
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|
1624 throw OrthancException(ErrorCode_UnknownResource); |
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|
1625 } |
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|
1626 |
1247 | 1627 db_.ListAvailableAttachments(target, id); |
697
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1628 } |
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1629 |
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1630 |
306
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1631 bool ServerIndex::LookupParent(std::string& target, |
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1632 const std::string& publicId) |
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1633 { |
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1634 boost::mutex::scoped_lock lock(mutex_); |
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1635 |
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1636 ResourceType type; |
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1637 int64_t id; |
1294 | 1638 if (!db_.LookupResource(id, type, publicId)) |
306
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1639 { |
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1640 throw OrthancException(ErrorCode_UnknownResource); |
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1641 } |
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1642 |
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1643 int64_t parentId; |
1247 | 1644 if (db_.LookupParent(parentId, id)) |
306
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1645 { |
1247 | 1646 target = db_.GetPublicId(parentId); |
306
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1647 return true; |
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1648 } |
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1649 else |
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1650 { |
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|
1651 return false; |
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|
1652 } |
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|
1653 } |
310 | 1654 |
1655 | |
1656 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1657 { | |
1658 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1659 Transaction transaction(*this); |
311 | 1660 |
1237 | 1661 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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diff
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|
1662 transaction.Commit(0); |
311 | 1663 |
1664 return seq; | |
310 | 1665 } |
315 | 1666 |
1667 | |
1668 | |
1669 void ServerIndex::LogChange(ChangeType changeType, | |
1670 const std::string& publicId) | |
1671 { | |
1672 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1673 Transaction transaction(*this); |
315 | 1674 |
1675 int64_t id; | |
1676 ResourceType type; | |
1294 | 1677 if (!db_.LookupResource(id, type, publicId)) |
315 | 1678 { |
1679 throw OrthancException(ErrorCode_UnknownResource); | |
1680 } | |
1681 | |
1237 | 1682 LogChange(id, changeType, type, publicId); |
1310
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|
1683 transaction.Commit(0); |
315 | 1684 } |
413
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|
1685 |
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|
1686 |
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|
1687 void ServerIndex::DeleteChanges() |
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|
1688 { |
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|
1689 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1690 db_.ClearChanges(); |
413
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|
1691 } |
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|
1692 |
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1693 void ServerIndex::DeleteExportedResources() |
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1694 { |
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|
1695 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1696 db_.ClearExportedResources(); |
413
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|
1697 } |
440
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1698 |
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|
1699 |
646 | 1700 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1701 /* out */ uint64_t& uncompressedSize, | |
1702 /* out */ unsigned int& countStudies, | |
1703 /* out */ unsigned int& countSeries, | |
1704 /* out */ unsigned int& countInstances, | |
1705 /* in */ int64_t id, | |
1706 /* in */ ResourceType type) | |
440
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|
1707 { |
646 | 1708 std::stack<int64_t> toExplore; |
1709 toExplore.push(id); | |
440
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|
1710 |
646 | 1711 countInstances = 0; |
1712 countSeries = 0; | |
1713 countStudies = 0; | |
1714 compressedSize = 0; | |
1715 uncompressedSize = 0; | |
440
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1716 |
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1717 while (!toExplore.empty()) |
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1718 { |
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1719 // Get the internal ID of the current resource |
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1720 int64_t resource = toExplore.top(); |
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1721 toExplore.pop(); |
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1722 |
1247 | 1723 ResourceType thisType = db_.GetResourceType(resource); |
440
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|
1724 |
702
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|
1725 std::list<FileContentType> f; |
1247 | 1726 db_.ListAvailableAttachments(f, resource); |
702
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1727 |
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|
1728 for (std::list<FileContentType>::const_iterator |
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1729 it = f.begin(); it != f.end(); ++it) |
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|
1730 { |
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|
1731 FileInfo attachment; |
1247 | 1732 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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|
1733 { |
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1734 compressedSize += attachment.GetCompressedSize(); |
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1735 uncompressedSize += attachment.GetUncompressedSize(); |
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1736 } |
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|
1737 } |
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1738 |
440
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1739 if (thisType == ResourceType_Instance) |
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1740 { |
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1741 countInstances++; |
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1742 } |
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|
1743 else |
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|
1744 { |
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|
1745 switch (thisType) |
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|
1746 { |
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|
1747 case ResourceType_Study: |
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1748 countStudies++; |
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1749 break; |
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1750 |
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diff
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|
1751 case ResourceType_Series: |
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1752 countSeries++; |
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diff
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|
1753 break; |
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diff
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1754 |
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diff
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|
1755 default: |
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diff
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|
1756 break; |
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diff
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|
1757 } |
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diff
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|
1758 |
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|
1759 // Tag all the children of this resource as to be explored |
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diff
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|
1760 std::list<int64_t> tmp; |
1247 | 1761 db_.GetChildrenInternalId(tmp, resource); |
440
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diff
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|
1762 for (std::list<int64_t>::const_iterator |
656 | 1763 it = tmp.begin(); it != tmp.end(); ++it) |
440
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diff
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|
1764 { |
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|
1765 toExplore.push(*it); |
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|
1766 } |
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|
1767 } |
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1768 } |
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|
1769 |
646 | 1770 if (countStudies == 0) |
1771 { | |
1772 countStudies = 1; | |
1773 } | |
1774 | |
1775 if (countSeries == 0) | |
1776 { | |
1777 countSeries = 1; | |
1778 } | |
1779 } | |
1780 | |
1781 | |
1782 | |
1783 void ServerIndex::GetStatistics(Json::Value& target, | |
1784 const std::string& publicId) | |
1785 { | |
1786 boost::mutex::scoped_lock lock(mutex_); | |
1787 | |
1788 ResourceType type; | |
1789 int64_t top; | |
1294 | 1790 if (!db_.LookupResource(top, type, publicId)) |
646 | 1791 { |
1792 throw OrthancException(ErrorCode_UnknownResource); | |
1793 } | |
1794 | |
1795 uint64_t uncompressedSize; | |
1796 uint64_t compressedSize; | |
1797 unsigned int countStudies; | |
1798 unsigned int countSeries; | |
1799 unsigned int countInstances; | |
1800 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1801 countSeries, countInstances, top, type); | |
1802 | |
440
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1803 target = Json::objectValue; |
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1804 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
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1805 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
440
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1806 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1807 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1808 |
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1809 switch (type) |
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1810 { |
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1811 // Do NOT add "break" below this point! |
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1812 case ResourceType_Patient: |
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1813 target["CountStudies"] = countStudies; |
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1814 |
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1815 case ResourceType_Study: |
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1816 target["CountSeries"] = countSeries; |
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1817 |
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1818 case ResourceType_Series: |
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1819 target["CountInstances"] = countInstances; |
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1820 |
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1821 case ResourceType_Instance: |
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1822 default: |
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1823 break; |
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1824 } |
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1825 } |
511
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1826 |
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1827 |
646 | 1828 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1829 /* out */ uint64_t& uncompressedSize, | |
1830 /* out */ unsigned int& countStudies, | |
1831 /* out */ unsigned int& countSeries, | |
1832 /* out */ unsigned int& countInstances, | |
1833 const std::string& publicId) | |
1834 { | |
1835 boost::mutex::scoped_lock lock(mutex_); | |
1836 | |
1837 ResourceType type; | |
1838 int64_t top; | |
1294 | 1839 if (!db_.LookupResource(top, type, publicId)) |
646 | 1840 { |
1841 throw OrthancException(ErrorCode_UnknownResource); | |
1842 } | |
1843 | |
1844 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1845 countSeries, countInstances, top, type); | |
1846 } | |
1847 | |
1848 | |
511
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1849 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
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1850 { |
2069
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1851 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60); |
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1852 if (stableAge <= 0) |
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1853 { |
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1854 stableAge = 60; |
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1855 } |
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1856 |
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1857 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1858 |
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1859 while (!that->done_) |
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1860 { |
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1861 // Check for stable resources each second |
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1862 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1863 |
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1864 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1865 |
511
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1866 while (!that->unstableResources_.IsEmpty() && |
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1867 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1868 { |
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1869 // This DICOM resource has not received any new instance for |
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1870 // some time. It can be considered as stable. |
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1871 |
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1872 UnstableResourcePayload payload; |
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1873 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1874 |
513 | 1875 // Ensure that the resource is still existing before logging the change |
1247 | 1876 if (that->db_.IsExistingResource(id)) |
511
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1877 { |
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1878 switch (payload.GetResourceType()) |
513 | 1879 { |
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1880 case ResourceType_Patient: |
1237 | 1881 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1882 break; |
511
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1883 |
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1884 case ResourceType_Study: |
1237 | 1885 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1886 break; |
511
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1887 |
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1888 case ResourceType_Series: |
1237 | 1889 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1890 break; |
1891 | |
1892 default: | |
1893 throw OrthancException(ErrorCode_InternalError); | |
1894 } | |
1895 | |
1896 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1897 } |
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1898 } |
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1899 } |
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1900 |
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1901 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1902 } |
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1903 |
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1904 |
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1905 void ServerIndex::MarkAsUnstable(int64_t id, |
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1906 Orthanc::ResourceType type, |
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1907 const std::string& publicId) |
511
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1908 { |
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1909 // WARNING: Before calling this method, "mutex_" must be locked. |
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1910 |
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1911 assert(type == Orthanc::ResourceType_Patient || |
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1912 type == Orthanc::ResourceType_Study || |
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1913 type == Orthanc::ResourceType_Series); |
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1914 |
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1915 UnstableResourcePayload payload(type, publicId); |
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1916 unstableResources_.AddOrMakeMostRecent(id, payload); |
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1917 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
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1918 |
1237 | 1919 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1920 } |
521 | 1921 |
1922 | |
1923 | |
1728
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1924 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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1925 ResourceType level, |
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1926 const DicomTag& tag, |
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1927 const std::string& value) |
615 | 1928 { |
1727 | 1929 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
1930 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
1931 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
1932 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
1933 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 1934 |
615 | 1935 result.clear(); |
1936 | |
1937 boost::mutex::scoped_lock lock(mutex_); | |
1938 | |
1746 | 1939 LookupIdentifierQuery query(level); |
1940 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
1941 query.Apply(result, db_); | |
615 | 1942 } |
1943 | |
1944 | |
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1945 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1946 const std::string& publicId) |
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1947 { |
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1948 boost::mutex::scoped_lock lock(mutex_); |
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1949 |
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1950 Transaction t(*this); |
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1951 |
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1952 ResourceType resourceType; |
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1953 int64_t resourceId; |
1294 | 1954 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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1955 { |
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1956 return StoreStatus_Failure; // Inexistent resource |
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1957 } |
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1958 |
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1959 // Remove possible previous attachment |
1247 | 1960 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
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1961 |
704
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1962 // Locate the patient of the target resource |
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1963 int64_t patientId = resourceId; |
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1964 for (;;) |
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1965 { |
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1966 int64_t parent; |
1247 | 1967 if (db_.LookupParent(parent, patientId)) |
704
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1968 { |
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1969 // We have not reached the patient level yet |
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1970 patientId = parent; |
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1971 } |
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1972 else |
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1973 { |
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1974 // We have reached the patient level |
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1975 break; |
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1976 } |
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1977 } |
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1978 |
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1979 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 1980 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
1981 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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1982 |
1247 | 1983 db_.AddAttachment(resourceId, attachment); |
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1984 |
1773
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1985 if (IsUserContentType(attachment.GetContentType())) |
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1986 { |
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1987 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
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1988 } |
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1989 |
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1990 t.Commit(attachment.GetCompressedSize()); |
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1991 |
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1992 return StoreStatus_Success; |
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1993 } |
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1994 |
702
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1995 |
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1996 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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1997 FileContentType type) |
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1998 { |
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1999 boost::mutex::scoped_lock lock(mutex_); |
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changeset
|
2000 Transaction t(*this); |
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|
2001 |
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diff
changeset
|
2002 ResourceType rtype; |
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diff
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|
2003 int64_t id; |
1294 | 2004 if (!db_.LookupResource(id, rtype, publicId)) |
702
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|
2005 { |
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|
2006 throw OrthancException(ErrorCode_UnknownResource); |
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diff
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|
2007 } |
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diff
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|
2008 |
1247 | 2009 db_.DeleteAttachment(id, type); |
702
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delete custom attachment
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701
diff
changeset
|
2010 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2011 if (IsUserContentType(type)) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2012 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2013 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2014 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2015 |
702
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diff
changeset
|
2016 t.Commit(0); |
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delete custom attachment
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parents:
701
diff
changeset
|
2017 } |
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701
diff
changeset
|
2018 |
7592a48e97e4
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diff
changeset
|
2019 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2020 bool ServerIndex::GetMetadata(Json::Value& target, |
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|
2021 const std::string& publicId) |
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|
2022 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2023 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
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diff
changeset
|
2024 |
b067017a8a5b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2025 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2026 |
b067017a8a5b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2027 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2028 int64_t id; |
1294 | 2029 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
2030 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2031 return false; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2032 } |
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|
2033 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2034 std::list<MetadataType> metadata; |
1247 | 2035 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2036 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2037 for (std::list<MetadataType>::const_iterator |
1304 | 2038 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2039 { |
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anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2040 std::string key = EnumerationToString(*it); |
1238 | 2041 |
2042 std::string value; | |
1247 | 2043 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2044 { |
2045 value.clear(); | |
2046 } | |
2047 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2048 target[key] = value; |
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|
2049 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2050 |
b067017a8a5b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2051 return true; |
b067017a8a5b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2052 } |
1218
efece308018e
report database version in /system
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parents:
1198
diff
changeset
|
2053 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2054 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2055 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2056 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2057 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2058 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2059 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2060 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2061 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2062 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2063 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2064 const std::string& defaultValue) |
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
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1198
diff
changeset
|
2065 { |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2066 boost::mutex::scoped_lock lock(mutex_); |
1239 | 2067 |
2068 std::string value; | |
1247 | 2069 if (db_.LookupGlobalProperty(value, property)) |
1239 | 2070 { |
2071 return value; | |
2072 } | |
2073 else | |
2074 { | |
2075 return defaultValue; | |
2076 } | |
1218
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2077 } |
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report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2078 |
1352 | 2079 |
2080 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2081 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2082 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2083 ResourceType levelOfInterest) |
1352 | 2084 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2085 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2086 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
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diff
changeset
|
2087 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2088 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
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diff
changeset
|
2089 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
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adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2090 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2091 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2092 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2093 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2094 |
1352 | 2095 result.Clear(); |
2096 | |
2097 boost::mutex::scoped_lock lock(mutex_); | |
2098 | |
2099 // Lookup for the requested resource | |
2100 int64_t id; | |
2101 ResourceType type; | |
2102 if (!db_.LookupResource(id, type, publicId) || | |
2103 type != expectedType) | |
2104 { | |
2105 return false; | |
2106 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2107 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2108 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2109 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2110 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2111 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2112 |
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adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2113 switch (levelOfInterest) |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2114 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2115 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2116 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2117 return true; |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2118 |
a903d57d9f0c
adaptation of search with patient tags at study level
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diff
changeset
|
2119 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2120 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2121 return true; |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2122 |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2123 default: |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2124 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2125 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2126 } |
1352 | 2127 else |
2128 { | |
2129 db_.GetMainDicomTags(result, id); | |
2130 return true; | |
2131 } | |
2132 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2133 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
2134 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2135 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2136 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
2137 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2138 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2139 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2140 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2141 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2142 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2143 |
1668
de1413733c97
reconstructing main dicom tags
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parents:
1555
diff
changeset
|
2144 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2145 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
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parents:
1555
diff
changeset
|
2146 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2147 boost::mutex::scoped_lock lock(mutex_); |
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reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2148 return db_.GetDatabaseVersion(); |
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reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2149 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2150 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2151 |
1753 | 2152 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2153 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
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1754
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2154 const ::Orthanc::LookupResource& lookup) |
1750
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2155 { |
1753 | 2156 boost::mutex::scoped_lock lock(mutex_); |
2157 | |
2158 std::list<int64_t> tmp; | |
2159 lookup.FindCandidates(tmp, db_); | |
2160 | |
2161 resources.resize(tmp.size()); | |
2162 instances.resize(tmp.size()); | |
2163 | |
2164 size_t pos = 0; | |
2165 for (std::list<int64_t>::const_iterator | |
2166 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2167 { | |
1754 | 2168 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2169 | |
1753 | 2170 int64_t instance; |
2171 if (!Toolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) | |
2172 { | |
2173 throw OrthancException(ErrorCode_InternalError); | |
2174 } | |
2175 | |
2176 resources[pos] = db_.GetPublicId(*it); | |
2177 instances[pos] = db_.GetPublicId(instance); | |
2178 } | |
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2179 } |
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2180 |
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2181 |
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2182 bool ServerIndex::LookupParent(std::string& target, |
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2183 const std::string& publicId, |
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2184 ResourceType parentType) |
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2185 { |
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2186 boost::mutex::scoped_lock lock(mutex_); |
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2187 |
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2188 ResourceType type; |
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2189 int64_t id; |
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2190 if (!db_.LookupResource(id, type, publicId)) |
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2191 { |
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2192 throw OrthancException(ErrorCode_UnknownResource); |
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2193 } |
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2194 |
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2195 while (type != parentType) |
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2196 { |
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2197 int64_t parentId; |
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2198 |
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2199 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
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2200 !db_.LookupParent(parentId, id)) |
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2201 { |
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2202 return false; |
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2203 } |
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2204 |
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2205 id = parentId; |
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2206 type = GetParentResourceType(type); |
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2207 } |
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2208 |
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2209 target = db_.GetPublicId(id); |
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2210 return true; |
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2211 } |
0 | 2212 } |