annotate OrthancServer/Sources/ServerJobs/ResourceModificationJob.h @ 5136:e71b22a43c0b

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author Alain Mazy <am@osimis.io>
date Tue, 17 Jan 2023 17:54:38 +0100
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children 15109c3f0f7d
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #pragma once
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24
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25 #include "../../../OrthancFramework/Sources/DicomParsing/DicomModification.h"
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26 #include "../../../OrthancFramework/Sources/MultiThreading/RunnableWorkersPool.h"
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27 #include "../DicomInstanceOrigin.h"
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28 #include "ThreadedSetOfInstancesJob.h"
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29 #include <boost/thread/recursive_mutex.hpp>
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30
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31 namespace Orthanc
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32 {
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33 class ServerContext;
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34
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35 class ResourceModificationJob : public ThreadedSetOfInstancesJob
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36 {
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37 private:
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38 class IOutput : public boost::noncopyable
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39 {
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40 public:
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41 virtual ~IOutput()
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42 {
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43 }
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44
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45 virtual void Update(DicomInstanceHasher& hasher) = 0;
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46
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47 virtual void Format(Json::Value& target) const = 0;
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48
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49 virtual bool IsSingleResource() const = 0;
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50 };
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51
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52 class SingleOutput;
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53 class MultipleOutputs;
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55 mutable boost::recursive_mutex outputMutex_;
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56
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57 std::unique_ptr<DicomModification> modification_;
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58 boost::shared_ptr<IOutput> output_;
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59 bool isAnonymization_;
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60 DicomInstanceOrigin origin_;
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61 bool transcode_;
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62 DicomTransferSyntax transferSyntax_;
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63 std::set<std::string> modifiedInstances_; // the list of new instance ids of the newly generated instances
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64
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65
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66 protected:
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67 virtual bool HandleInstance(const std::string& instance) ORTHANC_OVERRIDE; // from ThreadedSetOfInstancesJob
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68
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69 virtual void PostProcessInstances();
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70
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71 public:
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72 explicit ResourceModificationJob(ServerContext& context, unsigned int workersCount);
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73
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74 ResourceModificationJob(ServerContext& context,
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75 const Json::Value& serialized);
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76
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77 // NB: The "outputLevel" only controls the output format, and
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78 // might *not* be the same as "modification->GetLevel()"
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79 void SetSingleResourceModification(DicomModification* modification, // Takes ownership
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80 ResourceType outputLevel,
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81 bool isAnonymization);
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82
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83 void SetMultipleResourcesModification(DicomModification* modification, // Takes ownership
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84 bool isAnonymization);
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85
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86 void SetOrigin(const DicomInstanceOrigin& origin);
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87
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88 void SetOrigin(const RestApiCall& call);
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89
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90 const DicomModification& GetModification() const;
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91
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92 bool IsAnonymization() const
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93 {
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94 return isAnonymization_;
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95 }
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96
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97 const DicomInstanceOrigin& GetOrigin() const
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98 {
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99 return origin_;
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100 }
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101
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102 bool IsTranscode() const
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103 {
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104 return transcode_;
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105 }
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106
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107 DicomTransferSyntax GetTransferSyntax() const;
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108
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109 void SetTranscode(DicomTransferSyntax syntax);
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110
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111 void SetTranscode(const std::string& transferSyntaxUid);
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113 void ClearTranscode();
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114
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115 bool IsSingleResourceModification() const;
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116
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117 // Only possible if "IsSingleResourceModification()"
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118 ResourceType GetOutputLevel() const;
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119
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120 virtual void GetJobType(std::string& target) ORTHANC_OVERRIDE
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121 {
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122 target = "ResourceModification";
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123 }
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124
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125 virtual void GetPublicContent(Json::Value& value) ORTHANC_OVERRIDE;
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126
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127 virtual bool Serialize(Json::Value& value) ORTHANC_OVERRIDE;
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128
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129 virtual void Reset() ORTHANC_OVERRIDE;
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130 };
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131 }