Mercurial > hg > orthanc
annotate OrthancServer/ServerContext.cpp @ 3931:e6606d3ec892 transcoding
new configuration option: BuiltinDecoderTranscoderOrder
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 15 May 2020 09:22:31 +0200 |
parents | b99acc213937 |
children | 54dbebbcc032 |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
224 | 35 #include "ServerContext.h" |
36 | |
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37 #include "../Core/DicomParsing/Internals/DicomImageDecoder.h" |
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38 #include "../Core/Cache/SharedArchive.h" |
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39 #include "../Core/DicomParsing/DcmtkTranscoder.h" |
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40 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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41 #include "../Core/FileStorage/StorageAccessor.h" |
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42 #include "../Core/HttpServer/FilesystemHttpSender.h" |
1525 | 43 #include "../Core/HttpServer/HttpStreamTranscoder.h" |
3097 | 44 #include "../Core/JobsEngine/SetOfInstancesJob.h" |
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45 #include "../Core/Logging.h" |
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46 #include "../Core/MetricsRegistry.h" |
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47 #include "../Plugins/Engine/OrthancPlugins.h" |
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48 |
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49 #include "OrthancConfiguration.h" |
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50 #include "OrthancRestApi/OrthancRestApi.h" |
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51 #include "Search/DatabaseLookup.h" |
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52 #include "ServerJobs/OrthancJobUnserializer.h" |
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53 #include "ServerToolbox.h" |
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54 #include "StorageCommitmentReports.h" |
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55 |
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56 #include <EmbeddedResources.h> |
794 | 57 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 58 |
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59 |
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60 |
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61 #define ENABLE_DICOM_CACHE 1 |
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62 |
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63 static const size_t DICOM_CACHE_SIZE = 2; |
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64 |
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65 /** |
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66 * IMPORTANT: We make the assumption that the same instance of |
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67 * FileStorage can be accessed from multiple threads. This seems OK |
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68 * since the filesystem implements the required locking mechanisms, |
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69 * but maybe a read-writer lock on the "FileStorage" could be |
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70 * useful. Conversely, "ServerIndex" already implements mutex-based |
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71 * locking. |
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72 **/ |
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73 |
224 | 74 namespace Orthanc |
75 { | |
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76 void ServerContext::ChangeThread(ServerContext* that, |
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77 unsigned int sleepDelay) |
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78 { |
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79 while (!that->done_) |
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80 { |
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81 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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82 |
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83 if (obj.get() != NULL) |
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84 { |
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85 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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86 |
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87 boost::recursive_mutex::scoped_lock lock(that->listenersMutex_); |
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88 for (ServerListeners::iterator it = that->listeners_.begin(); |
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89 it != that->listeners_.end(); ++it) |
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90 { |
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91 try |
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92 { |
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93 try |
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94 { |
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95 it->GetListener().SignalChange(change); |
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96 } |
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97 catch (std::bad_alloc&) |
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98 { |
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99 LOG(ERROR) << "Not enough memory while signaling a change"; |
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100 } |
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101 catch (...) |
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102 { |
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103 throw OrthancException(ErrorCode_InternalError); |
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104 } |
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105 } |
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106 catch (OrthancException& e) |
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107 { |
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108 LOG(ERROR) << "Error in the " << it->GetDescription() |
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109 << " callback while signaling a change: " << e.What() |
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110 << " (code " << e.GetErrorCode() << ")"; |
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111 } |
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112 } |
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113 } |
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114 } |
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115 } |
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116 |
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117 |
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118 void ServerContext::SaveJobsThread(ServerContext* that, |
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119 unsigned int sleepDelay) |
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120 { |
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121 static const boost::posix_time::time_duration PERIODICITY = |
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122 boost::posix_time::seconds(10); |
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123 |
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124 boost::posix_time::ptime next = |
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125 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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126 |
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127 while (!that->done_) |
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128 { |
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129 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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130 |
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131 if (that->haveJobsChanged_ || |
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132 boost::posix_time::microsec_clock::universal_time() >= next) |
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133 { |
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134 that->haveJobsChanged_ = false; |
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135 that->SaveJobsEngine(); |
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136 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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137 } |
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138 } |
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139 } |
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140 |
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141 |
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142 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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143 { |
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144 haveJobsChanged_ = true; |
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145 mainLua_.SignalJobSubmitted(jobId); |
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146 } |
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147 |
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148 |
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149 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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150 { |
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151 haveJobsChanged_ = true; |
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152 mainLua_.SignalJobSuccess(jobId); |
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153 } |
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154 |
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155 |
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156 void ServerContext::SignalJobFailure(const std::string& jobId) |
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157 { |
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158 haveJobsChanged_ = true; |
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159 mainLua_.SignalJobFailure(jobId); |
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160 } |
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161 |
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162 |
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163 void ServerContext::SetupJobsEngine(bool unitTesting, |
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164 bool loadJobsFromDatabase) |
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165 { |
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166 if (loadJobsFromDatabase) |
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167 { |
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168 std::string serialized; |
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169 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry)) |
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170 { |
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171 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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172 OrthancJobUnserializer unserializer(*this); |
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173 |
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174 try |
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175 { |
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176 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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177 } |
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178 catch (OrthancException& e) |
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179 { |
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180 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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181 } |
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182 } |
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183 else |
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184 { |
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185 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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186 } |
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187 } |
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188 else |
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189 { |
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190 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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191 } |
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192 |
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193 jobsEngine_.GetRegistry().SetObserver(*this); |
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194 jobsEngine_.Start(); |
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195 isJobsEngineUnserialized_ = true; |
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196 |
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197 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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198 } |
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199 |
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200 |
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201 void ServerContext::SaveJobsEngine() |
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202 { |
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203 if (saveJobs_) |
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204 { |
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205 VLOG(1) << "Serializing the content of the jobs engine"; |
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206 |
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207 try |
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208 { |
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209 Json::Value value; |
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210 jobsEngine_.GetRegistry().Serialize(value); |
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211 |
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212 Json::FastWriter writer; |
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213 std::string serialized = writer.write(value); |
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214 |
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215 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, serialized); |
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216 } |
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217 catch (OrthancException& e) |
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218 { |
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219 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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220 } |
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221 } |
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222 } |
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223 |
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224 |
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225 ServerContext::ServerContext(IDatabaseWrapper& database, |
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226 IStorageArea& area, |
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227 bool unitTesting, |
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228 size_t maxCompletedJobs) : |
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229 index_(*this, database, (unitTesting ? 20 : 500)), |
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230 area_(area), |
656 | 231 compressionEnabled_(false), |
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232 storeMD5_(true), |
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233 provider_(*this), |
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234 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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235 mainLua_(*this), |
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236 filterLua_(*this), |
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237 luaListener_(*this), |
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238 jobsEngine_(maxCompletedJobs), |
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239 #if ORTHANC_ENABLE_PLUGINS == 1 |
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240 plugins_(NULL), |
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241 #endif |
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242 done_(false), |
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243 haveJobsChanged_(false), |
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244 isJobsEngineUnserialized_(false), |
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245 metricsRegistry_(new MetricsRegistry), |
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246 isHttpServerSecure_(true), |
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247 isExecuteLuaEnabled_(false), |
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248 overwriteInstances_(false), |
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249 dcmtkTranscoder_(new DcmtkTranscoder) |
224 | 250 { |
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251 { |
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252 OrthancConfiguration::ReaderLock lock; |
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253 |
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254 queryRetrieveArchive_.reset( |
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255 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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256 mediaArchive_.reset( |
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257 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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258 defaultLocalAet_ = lock.GetConfiguration().GetStringParameter("DicomAet", "ORTHANC"); |
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259 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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260 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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261 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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262 |
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263 // New configuration options in Orthanc 1.5.1 |
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264 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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265 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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266 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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267 |
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268 // New configuration option in Orthanc 1.6.0 |
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269 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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270 |
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271 // New options in Orthanc 1.7.0 |
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272 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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273 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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274 } |
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275 |
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276 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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277 |
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278 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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279 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
224 | 280 } |
281 | |
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282 |
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283 |
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284 ServerContext::~ServerContext() |
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285 { |
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286 if (!done_) |
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287 { |
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288 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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289 Stop(); |
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290 } |
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291 } |
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292 |
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293 |
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294 void ServerContext::Stop() |
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295 { |
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296 if (!done_) |
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297 { |
1459 | 298 { |
299 boost::recursive_mutex::scoped_lock lock(listenersMutex_); | |
300 listeners_.clear(); | |
301 } | |
302 | |
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303 done_ = true; |
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304 |
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305 if (changeThread_.joinable()) |
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306 { |
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307 changeThread_.join(); |
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308 } |
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309 |
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310 if (saveJobsThread_.joinable()) |
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311 { |
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312 saveJobsThread_.join(); |
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313 } |
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314 |
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315 jobsEngine_.GetRegistry().ResetObserver(); |
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316 |
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317 if (isJobsEngineUnserialized_) |
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318 { |
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319 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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320 SaveJobsEngine(); |
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321 } |
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322 |
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323 // Do not change the order below! |
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324 jobsEngine_.Stop(); |
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325 index_.Stop(); |
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326 } |
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327 } |
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328 |
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329 |
236 | 330 void ServerContext::SetCompressionEnabled(bool enabled) |
331 { | |
332 if (enabled) | |
333 LOG(WARNING) << "Disk compression is enabled"; | |
334 else | |
335 LOG(WARNING) << "Disk compression is disabled"; | |
336 | |
337 compressionEnabled_ = enabled; | |
338 } | |
339 | |
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340 |
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341 void ServerContext::RemoveFile(const std::string& fileUuid, |
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342 FileContentType type) |
227
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343 { |
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344 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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345 accessor.Remove(fileUuid, type); |
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346 } |
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347 |
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348 |
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349 StoreStatus ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
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350 DicomInstanceToStore& dicom, |
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351 StoreInstanceMode mode) |
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352 { |
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353 bool overwrite; |
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354 switch (mode) |
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355 { |
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356 case StoreInstanceMode_Default: |
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357 overwrite = overwriteInstances_; |
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358 break; |
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359 |
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360 case StoreInstanceMode_OverwriteDuplicate: |
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361 overwrite = true; |
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362 break; |
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363 |
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364 case StoreInstanceMode_IgnoreDuplicate: |
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365 overwrite = false; |
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366 break; |
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367 |
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368 default: |
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369 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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370 } |
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371 |
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372 try |
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373 { |
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374 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
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375 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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376 |
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377 resultPublicId = dicom.GetHasher().HashInstance(); |
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378 |
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379 Json::Value simplifiedTags; |
2120 | 380 ServerToolbox::SimplifyTags(simplifiedTags, dicom.GetJson(), DicomToJsonFormat_Human); |
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381 |
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382 // Test if the instance must be filtered out |
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383 bool accepted = true; |
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384 |
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385 { |
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386 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
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387 |
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388 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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389 { |
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390 try |
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391 { |
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392 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
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393 { |
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394 accepted = false; |
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395 break; |
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396 } |
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397 } |
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398 catch (OrthancException& e) |
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399 { |
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400 LOG(ERROR) << "Error in the " << it->GetDescription() |
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401 << " callback while receiving an instance: " << e.What() |
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402 << " (code " << e.GetErrorCode() << ")"; |
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403 throw; |
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404 } |
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405 } |
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406 } |
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407 |
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408 if (!accepted) |
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409 { |
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410 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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411 return StoreStatus_FilteredOut; |
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412 } |
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413 |
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414 { |
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415 // Remove the file from the DicomCache (useful if |
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416 // "OverwriteInstances" is set to "true") |
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417 boost::mutex::scoped_lock lock(dicomCacheMutex_); |
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418 dicomCache_.Invalidate(resultPublicId); |
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419 } |
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420 |
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421 // TODO Should we use "gzip" instead? |
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422 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
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423 |
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424 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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425 FileContentType_Dicom, compression, storeMD5_); |
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426 FileInfo jsonInfo = accessor.Write(dicom.GetJson().toStyledString(), |
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427 FileContentType_DicomAsJson, compression, storeMD5_); |
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428 |
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429 ServerIndex::Attachments attachments; |
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430 attachments.push_back(dicomInfo); |
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431 attachments.push_back(jsonInfo); |
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432 |
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433 typedef std::map<MetadataType, std::string> InstanceMetadata; |
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434 InstanceMetadata instanceMetadata; |
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435 StoreStatus status = index_.Store( |
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436 instanceMetadata, dicom, attachments, overwrite); |
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437 |
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438 // Only keep the metadata for the "instance" level |
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439 dicom.GetMetadata().clear(); |
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440 |
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441 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 442 it != instanceMetadata.end(); ++it) |
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443 { |
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444 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
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445 it->second)); |
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446 } |
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|
447 |
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448 if (status != StoreStatus_Success) |
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449 { |
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450 accessor.Remove(dicomInfo); |
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451 accessor.Remove(jsonInfo); |
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452 } |
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|
453 |
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|
454 switch (status) |
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455 { |
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456 case StoreStatus_Success: |
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457 LOG(INFO) << "New instance stored"; |
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458 break; |
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|
459 |
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|
460 case StoreStatus_AlreadyStored: |
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461 LOG(INFO) << "Already stored"; |
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|
462 break; |
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|
463 |
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|
464 case StoreStatus_Failure: |
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465 LOG(ERROR) << "Store failure"; |
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466 break; |
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|
467 |
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|
468 default: |
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|
469 // This should never happen |
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470 break; |
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|
471 } |
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|
472 |
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|
473 if (status == StoreStatus_Success || |
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474 status == StoreStatus_AlreadyStored) |
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|
475 { |
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|
476 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
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|
477 |
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478 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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479 { |
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|
480 try |
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481 { |
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482 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
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483 } |
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484 catch (OrthancException& e) |
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|
485 { |
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486 LOG(ERROR) << "Error in the " << it->GetDescription() |
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487 << " callback while receiving an instance: " << e.What() |
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488 << " (code " << e.GetErrorCode() << ")"; |
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489 } |
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|
490 } |
1004
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|
491 } |
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|
492 |
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|
493 return status; |
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|
494 } |
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|
495 catch (OrthancException& e) |
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496 { |
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497 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
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|
498 { |
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reorganization in macros
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diff
changeset
|
499 dicom.GetSummary().LogMissingTagsForStore(); |
1004
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DicomInstanceToStore
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|
500 } |
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changeset
|
501 |
a226e0959d8b
DicomInstanceToStore
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1002
diff
changeset
|
502 throw; |
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DicomInstanceToStore
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diff
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|
503 } |
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DicomInstanceToStore
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diff
changeset
|
504 } |
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DicomInstanceToStore
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1002
diff
changeset
|
505 |
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DicomInstanceToStore
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1002
diff
changeset
|
506 |
3912
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|
507 StoreStatus ServerContext::Store(std::string& resultPublicId, |
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|
508 DicomInstanceToStore& dicom, |
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diff
changeset
|
509 StoreInstanceMode mode) |
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changeset
|
510 { |
3913
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diff
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|
511 //const DicomTransferSyntax option = DicomTransferSyntax_JPEGProcess1; |
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diff
changeset
|
512 const DicomTransferSyntax option = DicomTransferSyntax_LittleEndianExplicit; |
3912
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changeset
|
513 |
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diff
changeset
|
514 if (1) |
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515 { |
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516 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
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517 } |
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diff
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518 else |
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diff
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|
519 { |
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diff
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|
520 // TODO => Automated transcoding of incoming DICOM files |
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diff
changeset
|
521 |
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diff
changeset
|
522 DicomTransferSyntax sourceSyntax; |
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diff
changeset
|
523 if (!FromDcmtkBridge::LookupOrthancTransferSyntax( |
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diff
changeset
|
524 sourceSyntax, dicom.GetParsedDicomFile().GetDcmtkObject()) || |
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diff
changeset
|
525 sourceSyntax == option) |
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diff
changeset
|
526 { |
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|
527 // No transcoding |
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|
528 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
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|
529 } |
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diff
changeset
|
530 else |
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diff
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|
531 { |
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diff
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|
532 std::set<DicomTransferSyntax> syntaxes; |
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|
533 syntaxes.insert(option); |
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diff
changeset
|
534 |
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diff
changeset
|
535 std::unique_ptr<IDicomTranscoder::TranscodedDicom> transcoded( |
3930
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transcoder plugins and GDCM transcoding are working
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diff
changeset
|
536 TranscodeToParsed(dicom.GetParsedDicomFile().GetDcmtkObject(), |
b99acc213937
transcoder plugins and GDCM transcoding are working
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diff
changeset
|
537 dicom.GetBufferData(), dicom.GetBufferSize(), |
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3928
diff
changeset
|
538 syntaxes, true /* allow new SOP instance UID */)); |
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diff
changeset
|
539 |
3912
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diff
changeset
|
540 if (transcoded.get() == NULL) |
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diff
changeset
|
541 { |
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diff
changeset
|
542 // Cannot transcode => store the original file |
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
543 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
544 } |
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diff
changeset
|
545 else |
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diff
changeset
|
546 { |
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
547 std::unique_ptr<ParsedDicomFile> tmp( |
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
548 ParsedDicomFile::AcquireDcmtkObject(transcoded->ReleaseDicom())); |
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diff
changeset
|
549 |
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parents:
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diff
changeset
|
550 DicomInstanceToStore toStore; |
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
551 toStore.SetParsedDicomFile(*tmp); |
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diff
changeset
|
552 toStore.SetOrigin(dicom.GetOrigin()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
553 |
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
554 StoreStatus ok = StoreAfterTranscoding(resultPublicId, toStore, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
555 printf(">> %s\n", resultPublicId.c_str()); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
556 return ok; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
557 } |
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prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
558 } |
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diff
changeset
|
559 } |
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parents:
3911
diff
changeset
|
560 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
561 |
7610af1532c3
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diff
changeset
|
562 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
563 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
564 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
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parents:
1145
diff
changeset
|
565 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
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224
diff
changeset
|
566 { |
232
5368bbe813cf
refactoring of attachments
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parents:
227
diff
changeset
|
567 FileInfo attachment; |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
568 if (!index_.LookupAttachment(attachment, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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227
diff
changeset
|
569 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
570 throw OrthancException(ErrorCode_UnknownResource); |
236 | 571 } |
226
8a26a8e85edf
refactoring to read files
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224
diff
changeset
|
572 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
573 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1772
53e045b5a8ec
MIME content type can be associated to custom attachments (cf. "UserContentType")
Sebastien Jodogne <s.jodogne@gmail.com>
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1758
diff
changeset
|
574 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
226
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refactoring to read files
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parents:
224
diff
changeset
|
575 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
576 |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
577 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
578 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
579 FileContentType attachmentType, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
580 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
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diff
changeset
|
581 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
582 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
583 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
584 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
585 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
586 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
587 FileInfo attachment; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
588 if (!index_.LookupAttachment(attachment, resourceId, attachmentType)) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
589 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
590 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
591 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
592 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
593 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
594 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
595 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
596 return; |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
597 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
598 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
599 std::string content; |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
600 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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3174
diff
changeset
|
601 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
602 accessor.Read(content, attachment); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
603 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
604 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
605 content.size(), attachmentType, compression, storeMD5_); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
606 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
607 try |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
608 { |
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609 StoreStatus status = index_.AddAttachment(modified, resourceId); |
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610 if (status != StoreStatus_Success) |
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611 { |
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612 accessor.Remove(modified); |
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613 throw OrthancException(ErrorCode_Database); |
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614 } |
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615 } |
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616 catch (OrthancException&) |
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617 { |
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618 accessor.Remove(modified); |
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619 throw; |
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620 } |
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621 } |
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622 |
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623 |
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624 void ServerContext::ReadDicomAsJsonInternal(std::string& result, |
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625 const std::string& instancePublicId) |
2127 | 626 { |
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627 FileInfo attachment; |
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628 if (index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomAsJson)) |
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629 { |
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630 ReadAttachment(result, attachment); |
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631 } |
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632 else |
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633 { |
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634 // The "DICOM as JSON" summary is not available from the Orthanc |
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635 // store (most probably deleted), reconstruct it from the DICOM file |
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636 std::string dicom; |
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637 ReadDicom(dicom, instancePublicId); |
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638 |
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639 LOG(INFO) << "Reconstructing the missing DICOM-as-JSON summary for instance: " |
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640 << instancePublicId; |
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641 |
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642 ParsedDicomFile parsed(dicom); |
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643 |
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644 Json::Value summary; |
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645 parsed.DatasetToJson(summary); |
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646 |
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647 result = summary.toStyledString(); |
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648 |
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649 if (!AddAttachment(instancePublicId, FileContentType_DicomAsJson, |
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650 result.c_str(), result.size())) |
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651 { |
2956 | 652 throw OrthancException(ErrorCode_InternalError, |
653 "Cannot associate the DICOM-as-JSON summary to instance: " + instancePublicId); | |
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654 } |
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655 } |
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656 } |
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657 |
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658 |
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659 void ServerContext::ReadDicomAsJson(std::string& result, |
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660 const std::string& instancePublicId, |
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661 const std::set<DicomTag>& ignoreTagLength) |
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662 { |
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663 if (ignoreTagLength.empty()) |
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664 { |
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665 ReadDicomAsJsonInternal(result, instancePublicId); |
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666 } |
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667 else |
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668 { |
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669 Json::Value tmp; |
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670 ReadDicomAsJson(tmp, instancePublicId, ignoreTagLength); |
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671 result = tmp.toStyledString(); |
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672 } |
2127 | 673 } |
674 | |
675 | |
2124 | 676 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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677 const std::string& instancePublicId, |
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678 const std::set<DicomTag>& ignoreTagLength) |
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679 { |
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680 if (ignoreTagLength.empty()) |
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681 { |
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682 std::string tmp; |
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683 ReadDicomAsJsonInternal(tmp, instancePublicId); |
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684 |
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685 Json::Reader reader; |
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686 if (!reader.parse(tmp, result)) |
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687 { |
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688 throw OrthancException(ErrorCode_CorruptedFile); |
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689 } |
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690 } |
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691 else |
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692 { |
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693 // The "DicomAsJson" attachment might have stored some tags as |
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694 // "too long". We are forced to re-parse the DICOM file. |
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695 std::string dicom; |
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696 ReadDicom(dicom, instancePublicId); |
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697 |
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698 ParsedDicomFile parsed(dicom); |
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699 parsed.DatasetToJson(result, ignoreTagLength); |
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700 } |
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701 } |
227
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702 |
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703 |
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704 void ServerContext::ReadAttachment(std::string& result, |
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705 const std::string& instancePublicId, |
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706 FileContentType content, |
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707 bool uncompressIfNeeded) |
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708 { |
232
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709 FileInfo attachment; |
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710 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
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711 { |
2956 | 712 throw OrthancException(ErrorCode_InternalError, |
713 "Unable to read attachment " + EnumerationToString(content) + | |
714 " of instance " + instancePublicId); | |
227
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715 } |
1550 | 716 |
3175
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717 assert(attachment.GetContentType() == content); |
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718 |
1550 | 719 if (uncompressIfNeeded) |
720 { | |
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721 ReadAttachment(result, attachment); |
1550 | 722 } |
723 else | |
724 { | |
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725 // Do not uncompress the content of the storage area, return the |
1550 | 726 // raw data |
3175
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727 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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728 accessor.ReadRaw(result, attachment); |
1550 | 729 } |
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730 } |
285
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731 |
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732 |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
733 void ServerContext::ReadAttachment(std::string& result, |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
734 const FileInfo& attachment) |
1778
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create media refactoring
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735 { |
2128
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|
736 // This will decompress the attachment |
3175
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|
737 StorageAccessor accessor(area_, GetMetricsRegistry()); |
2128
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|
738 accessor.Read(result, attachment); |
1778
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|
739 } |
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diff
changeset
|
740 |
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|
741 |
285
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742 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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743 { |
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|
744 std::string content; |
2124 | 745 context_.ReadDicom(content, instancePublicId); |
285
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746 return new ParsedDicomFile(content); |
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747 } |
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|
748 |
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749 |
778
aebf0071020e
refactoring of the mutex for the dicom cache
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|
750 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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|
751 const std::string& instancePublicId) : |
1129
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fix possible deadlock
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1126
diff
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|
752 that_(that), |
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|
753 lock_(that_.dicomCacheMutex_) |
285
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754 { |
291
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755 #if ENABLE_DICOM_CACHE == 0 |
3712
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replacing std::auto_ptr by std::unique_ptr
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|
756 static std::unique_ptr<IDynamicObject> p; |
3836 | 757 p.reset(that_.provider_.Provide(instancePublicId)); |
778
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758 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
291
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759 #else |
778
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|
760 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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|
761 #endif |
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refactoring of the mutex for the dicom cache
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|
762 } |
aebf0071020e
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parents:
774
diff
changeset
|
763 |
aebf0071020e
refactoring of the mutex for the dicom cache
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parents:
774
diff
changeset
|
764 |
aebf0071020e
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parents:
774
diff
changeset
|
765 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
aebf0071020e
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diff
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|
766 { |
285
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|
767 } |
304 | 768 |
769 | |
695
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
770 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
771 { |
c59bc408fb10
parameter to disable the computation of the MD5
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parents:
689
diff
changeset
|
772 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
773 storeMD5_ = storeMD5; |
695
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
774 } |
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
775 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
776 |
2929e17f8447
add attachments to resources
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parents:
697
diff
changeset
|
777 bool ServerContext::AddAttachment(const std::string& resourceId, |
2929e17f8447
add attachments to resources
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parents:
697
diff
changeset
|
778 FileContentType attachmentType, |
2929e17f8447
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parents:
697
diff
changeset
|
779 const void* data, |
2929e17f8447
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parents:
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diff
changeset
|
780 size_t size) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
781 { |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
782 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
783 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
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parents:
1548
diff
changeset
|
784 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
785 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
786 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
787 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
788 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
789 |
1549
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refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
790 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
791 if (status != StoreStatus_Success) |
2929e17f8447
add attachments to resources
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parents:
697
diff
changeset
|
792 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
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diff
changeset
|
793 accessor.Remove(attachment); |
699
2929e17f8447
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parents:
697
diff
changeset
|
794 return false; |
2929e17f8447
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parents:
697
diff
changeset
|
795 } |
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parents:
697
diff
changeset
|
796 else |
2929e17f8447
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parents:
697
diff
changeset
|
797 { |
2929e17f8447
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parents:
697
diff
changeset
|
798 return true; |
2929e17f8447
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parents:
697
diff
changeset
|
799 } |
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parents:
697
diff
changeset
|
800 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
801 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
802 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
803 bool ServerContext::DeleteResource(Json::Value& target, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
804 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
805 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
806 { |
2507 | 807 if (expectedType == ResourceType_Instance) |
808 { | |
809 // remove the file from the DicomCache | |
810 boost::mutex::scoped_lock lock(dicomCacheMutex_); | |
811 dicomCache_.Invalidate(uuid); | |
812 } | |
813 | |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
814 return index_.DeleteResource(target, uuid, expectedType); |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
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diff
changeset
|
815 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
816 |
6b9b02a16e99
NewChildInstance change type
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parents:
1165
diff
changeset
|
817 |
1198 | 818 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
819 { |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
820 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
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parents:
1165
diff
changeset
|
821 } |
1232
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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parents:
1198
diff
changeset
|
822 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
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1198
diff
changeset
|
823 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
824 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
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parents:
1433
diff
changeset
|
825 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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parents:
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diff
changeset
|
826 { |
1459 | 827 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
828 | |
1434
f9cd40166269
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diff
changeset
|
829 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
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parents:
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diff
changeset
|
830 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
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parents:
1433
diff
changeset
|
831 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
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parents:
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diff
changeset
|
832 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
833 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
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parents:
1433
diff
changeset
|
834 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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parents:
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diff
changeset
|
835 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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parents:
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diff
changeset
|
836 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
837 |
1434
f9cd40166269
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parents:
1433
diff
changeset
|
838 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
839 { |
1459 | 840 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
841 | |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
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parents:
1433
diff
changeset
|
842 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
843 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
844 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
845 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
846 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
847 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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parents:
1198
diff
changeset
|
848 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
849 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
850 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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parents:
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diff
changeset
|
851 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
852 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
853 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
854 return *plugins_; |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
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|
855 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
856 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
857 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
858 throw OrthancException(ErrorCode_InternalError); |
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Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
859 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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parents:
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diff
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|
860 } |
1632
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
861 |
1741
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OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
862 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
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parents:
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diff
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|
863 { |
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OrthancStarted and OrthancStopped events in plugins
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diff
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|
864 if (HasPlugins()) |
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OrthancStarted and OrthancStopped events in plugins
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parents:
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|
865 { |
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OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
866 return *plugins_; |
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OrthancStarted and OrthancStopped events in plugins
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diff
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867 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
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diff
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|
868 else |
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OrthancStarted and OrthancStopped events in plugins
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parents:
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diff
changeset
|
869 { |
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OrthancStarted and OrthancStopped events in plugins
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parents:
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870 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
871 } |
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OrthancStarted and OrthancStopped events in plugins
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parents:
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diff
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|
872 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
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parents:
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diff
changeset
|
873 |
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fix build with plugins disabled
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|
874 #endif |
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fix build with plugins disabled
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|
875 |
eb8fbcf008b5
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parents:
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diff
changeset
|
876 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
877 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
878 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
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|
879 #if ORTHANC_ENABLE_PLUGINS == 1 |
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fix build with plugins disabled
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880 return (plugins_ != NULL); |
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diff
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|
881 #else |
eb8fbcf008b5
fix build with plugins disabled
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diff
changeset
|
882 return false; |
eb8fbcf008b5
fix build with plugins disabled
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diff
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|
883 #endif |
eb8fbcf008b5
fix build with plugins disabled
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diff
changeset
|
884 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
885 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
886 |
3021
2cbafb5d5a62
renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3015
diff
changeset
|
887 void ServerContext::Apply(ILookupVisitor& visitor, |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
888 const DatabaseLookup& lookup, |
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
889 ResourceType queryLevel, |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
890 size_t since, |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
891 size_t limit) |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
892 { |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
3677
diff
changeset
|
893 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
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diff
changeset
|
894 limitFindInstances_ : limitFindResults_); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
895 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
896 std::vector<std::string> resources, instances; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
897 |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
898 { |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
899 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
900 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
901 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
changeset
|
902 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
903 bool complete = (databaseLimit == 0 || |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
904 resources.size() <= databaseLimit); |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
905 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3003
diff
changeset
|
906 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
907 |
3679
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
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diff
changeset
|
908 /** |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
3677
diff
changeset
|
909 * "resources" contains the Orthanc ID of the resource at level |
6358923d3ced
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
910 * "queryLevel", "instances" contains one the Orthanc ID of one |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
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diff
changeset
|
911 * sample instance from this resource. |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
912 **/ |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
913 assert(resources.size() == instances.size()); |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
914 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
915 size_t countResults = 0; |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
916 size_t skipped = 0; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
917 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
918 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
919 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
920 for (size_t i = 0; i < instances.size(); i++) |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
921 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
922 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
923 // the disk if only "main DICOM tags" are to be returned |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
924 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3679
diff
changeset
|
925 std::unique_ptr<Json::Value> dicomAsJson; |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
926 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
927 bool hasOnlyMainDicomTags; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
928 DicomMap dicom; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
929 |
3677
4182cde57afb
refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
930 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly || |
4182cde57afb
refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
931 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer || |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
932 lookup.HasOnlyMainDicomTags()) |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
933 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
934 // Case (1): The main DICOM tags, as stored in the database, |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
935 // are sufficient to look for match |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
936 |
3679
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Sebastien Jodogne <s.jodogne@gmail.com>
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3677
diff
changeset
|
937 DicomMap tmp; |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
938 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i])) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
939 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
940 // The instance has been removed during the execution of the |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
941 // lookup, ignore it |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
942 continue; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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parents:
3012
diff
changeset
|
943 } |
3679
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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diff
changeset
|
944 |
6358923d3ced
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parents:
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diff
changeset
|
945 #if 1 |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
946 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
947 // level of interest for the query |
6358923d3ced
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parents:
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diff
changeset
|
948 switch (queryLevel) |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
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diff
changeset
|
949 { |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
3677
diff
changeset
|
950 // WARNING: Don't reorder cases below, and don't add "break" |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
951 case ResourceType_Instance: |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
3677
diff
changeset
|
952 dicom.MergeMainDicomTags(tmp, ResourceType_Instance); |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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diff
changeset
|
953 |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
954 case ResourceType_Series: |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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parents:
3677
diff
changeset
|
955 dicom.MergeMainDicomTags(tmp, ResourceType_Series); |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
956 |
6358923d3ced
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parents:
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diff
changeset
|
957 case ResourceType_Study: |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
958 dicom.MergeMainDicomTags(tmp, ResourceType_Study); |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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diff
changeset
|
959 |
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960 case ResourceType_Patient: |
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961 dicom.MergeMainDicomTags(tmp, ResourceType_Patient); |
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962 break; |
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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963 |
6358923d3ced
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964 default: |
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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965 throw OrthancException(ErrorCode_InternalError); |
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966 } |
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967 |
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968 // Special case of the "Modality" at the study level, in order |
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diff
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|
969 // to deal with C-FIND on "ModalitiesInStudy" (0008,0061). |
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|
970 // Check out integration test "test_rest_modalities_in_study". |
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971 if (queryLevel == ResourceType_Study) |
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972 { |
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973 dicom.CopyTagIfExists(tmp, DICOM_TAG_MODALITY); |
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974 } |
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|
975 #else |
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|
976 dicom.Assign(tmp); // This emulates Orthanc <= 1.5.8 |
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C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
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|
977 #endif |
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|
978 |
3012
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979 hasOnlyMainDicomTags = true; |
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980 } |
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981 else |
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982 { |
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diff
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|
983 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
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984 // the storage area |
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|
985 dicomAsJson.reset(new Json::Value); |
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diff
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|
986 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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987 |
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988 dicom.FromDicomAsJson(*dicomAsJson); |
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989 |
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diff
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|
990 // This map contains the entire JSON, i.e. more than the main DICOM tags |
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|
991 hasOnlyMainDicomTags = false; |
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diff
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|
992 } |
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ServerContext::Apply lookup
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993 |
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994 if (lookup.IsMatch(dicom)) |
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|
995 { |
2304
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|
996 if (skipped < since) |
1757
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|
997 { |
2304
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Argument "Since" in URI "/tools/find" (related to issue 53)
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|
998 skipped++; |
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999 } |
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1000 else if (limit != 0 && |
3001
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1001 countResults >= limit) |
2304
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Argument "Since" in URI "/tools/find" (related to issue 53)
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1002 { |
3003
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diff
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1003 // Too many results, don't mark as complete |
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|
1004 complete = false; |
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|
1005 break; |
1757
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|
1006 } |
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1007 else |
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|
1008 { |
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diff
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|
1009 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer || |
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diff
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|
1010 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) && |
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1011 dicomAsJson.get() == NULL && |
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|
1012 isDicomAsJsonNeeded) |
3012
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1013 { |
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|
1014 dicomAsJson.reset(new Json::Value); |
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|
1015 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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1016 } |
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1017 |
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1018 if (hasOnlyMainDicomTags) |
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|
1019 { |
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diff
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|
1020 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
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|
1021 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
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1022 } |
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|
1023 else |
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|
1024 { |
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1025 // Remove the non-main DICOM tags from "dicom" if Case (2) |
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changeset
|
1026 // was used, for consistency with Case (1) |
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1027 |
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|
1028 DicomMap mainDicomTags; |
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|
1029 mainDicomTags.ExtractMainDicomTags(dicom); |
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1030 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
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1031 } |
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1032 |
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|
1033 countResults ++; |
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1034 } |
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1035 } |
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1036 } |
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1037 |
3003
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1038 if (complete) |
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1039 { |
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|
1040 visitor.MarkAsComplete(); |
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1041 } |
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refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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1042 |
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|
1043 LOG(INFO) << "Number of matching resources: " << countResults; |
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1044 } |
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1045 |
2626 | 1046 |
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1047 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
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1048 const std::string& publicId, |
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1049 MetadataType metadata) |
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1050 { |
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|
1051 // This is a backwards-compatibility function, that can |
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|
1052 // reconstruct metadata that were not generated by an older |
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1053 // release of Orthanc |
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1054 |
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1055 if (metadata == MetadataType_Instance_SopClassUid || |
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1056 metadata == MetadataType_Instance_TransferSyntax) |
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1057 { |
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1058 if (index_.LookupMetadata(target, publicId, metadata)) |
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1059 { |
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1060 return true; |
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1061 } |
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|
1062 else |
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parents:
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1063 { |
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diff
changeset
|
1064 // These metadata are mandatory in DICOM instances, and were |
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On C-FIND, avoid accessing the storage area whenever possible
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diff
changeset
|
1065 // introduced in Orthanc 1.2.0. The fact that |
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On C-FIND, avoid accessing the storage area whenever possible
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|
1066 // "LookupMetadata()" has failed indicates that this database |
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|
1067 // comes from an older release of Orthanc. |
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changeset
|
1068 |
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|
1069 DicomTag tag(0, 0); |
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1070 |
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changeset
|
1071 switch (metadata) |
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|
1072 { |
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|
1073 case MetadataType_Instance_SopClassUid: |
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|
1074 tag = DICOM_TAG_SOP_CLASS_UID; |
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|
1075 break; |
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parents:
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changeset
|
1076 |
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changeset
|
1077 case MetadataType_Instance_TransferSyntax: |
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|
1078 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
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changeset
|
1079 break; |
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diff
changeset
|
1080 |
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changeset
|
1081 default: |
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changeset
|
1082 throw OrthancException(ErrorCode_InternalError); |
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|
1083 } |
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changeset
|
1084 |
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changeset
|
1085 Json::Value dicomAsJson; |
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|
1086 ReadDicomAsJson(dicomAsJson, publicId); |
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changeset
|
1087 |
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changeset
|
1088 DicomMap tags; |
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|
1089 tags.FromDicomAsJson(dicomAsJson); |
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changeset
|
1090 |
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|
1091 const DicomValue* value = tags.TestAndGetValue(tag); |
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|
1092 |
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changeset
|
1093 if (value != NULL && |
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diff
changeset
|
1094 !value->IsNull() && |
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changeset
|
1095 !value->IsBinary()) |
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changeset
|
1096 { |
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|
1097 target = value->GetContent(); |
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changeset
|
1098 |
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|
1099 // Store for reuse |
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|
1100 index_.SetMetadata(publicId, metadata, target); |
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1101 return true; |
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|
1102 } |
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|
1103 else |
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|
1104 { |
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|
1105 // Should never happen |
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1106 return false; |
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|
1107 } |
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|
1108 } |
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changeset
|
1109 } |
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|
1110 else |
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changeset
|
1111 { |
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changeset
|
1112 // No backward |
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1113 return index_.LookupMetadata(target, publicId, metadata); |
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|
1114 } |
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|
1115 } |
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changeset
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1116 |
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1117 |
2626 | 1118 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1119 const std::string& publicId) | |
1120 { | |
1121 std::list<std::string> instances; | |
1122 GetIndex().GetChildInstances(instances, publicId); | |
1123 | |
1124 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1125 | |
1126 for (std::list<std::string>::const_iterator | |
1127 it = instances.begin(); it != instances.end(); ++it) | |
1128 { | |
1129 job.AddInstance(*it); | |
1130 } | |
1131 } | |
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1132 |
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1133 |
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1134 void ServerContext::SignalUpdatedModalities() |
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1135 { |
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1136 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1137 if (HasPlugins()) |
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1138 { |
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1139 GetPlugins().SignalUpdatedModalities(); |
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1140 } |
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1141 #endif |
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1142 } |
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1143 |
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1144 |
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1145 void ServerContext::SignalUpdatedPeers() |
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1146 { |
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1147 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1148 if (HasPlugins()) |
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1149 { |
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1150 GetPlugins().SignalUpdatedPeers(); |
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1151 } |
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1152 #endif |
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1153 } |
3660
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IStorageCommitmentFactory
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1154 |
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IStorageCommitmentFactory
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|
1155 |
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IStorageCommitmentFactory
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changeset
|
1156 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
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|
1157 ServerContext::CreateStorageCommitment(const std::string& jobId, |
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1158 const std::string& transactionUid, |
f159b731c47d
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changeset
|
1159 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
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|
1160 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
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1161 const std::string& remoteAet, |
d8371b4302ff
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|
1162 const std::string& calledAet) |
3660
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|
1163 { |
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|
1164 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1165 if (HasPlugins()) |
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changeset
|
1166 { |
3662
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OrthancPluginRegisterStorageCommitmentScpCallback()
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1167 return GetPlugins().CreateStorageCommitment( |
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changeset
|
1168 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
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1169 } |
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|
1170 #endif |
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1171 |
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changeset
|
1172 return NULL; |
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|
1173 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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1174 |
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|
1175 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1176 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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changeset
|
1177 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1178 { |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
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changeset
|
1179 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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|
1180 { |
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changeset
|
1181 // Use Orthanc's built-in decoder, using the cache to speed-up |
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changeset
|
1182 // things on multi-frame images |
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changeset
|
1183 ServerContext::DicomCacheLocker locker(*this, publicId); |
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|
1184 std::unique_ptr<ImageAccessor> decoded( |
e6606d3ec892
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changeset
|
1185 DicomImageDecoder::Decode(locker.GetDicom(), frameIndex)); |
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changeset
|
1186 if (decoded.get() != NULL) |
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1187 { |
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1188 return decoded.release(); |
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1189 } |
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1190 } |
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1191 |
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1192 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1193 if (HasPlugins() && |
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1194 GetPlugins().HasCustomImageDecoder()) |
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1195 { |
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1196 // TODO: Store the raw buffer in the DicomCacheLocker |
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1197 std::string dicomContent; |
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ServerContext::DecodeDicomFrame()
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1198 ReadDicom(dicomContent, publicId); |
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1199 std::unique_ptr<ImageAccessor> decoded( |
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1200 GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
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1201 if (decoded.get() != NULL) |
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1202 { |
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1203 return decoded.release(); |
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1204 } |
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|
1205 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
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1206 { |
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1207 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
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1208 << "fallback to the built-in DCMTK decoder"; |
3928
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1209 } |
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1210 } |
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1211 #endif |
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1212 |
3931
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1213 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
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1214 { |
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1215 ServerContext::DicomCacheLocker locker(*this, publicId); |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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1216 return DicomImageDecoder::Decode(locker.GetDicom(), frameIndex); |
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ServerContext::DecodeDicomFrame()
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1217 } |
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|
1218 else |
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1219 { |
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|
1220 return NULL; // Built-in decoder is disabled |
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1221 } |
3928
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1222 } |
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ServerContext::DecodeDicomFrame()
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|
1223 |
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ServerContext::DecodeDicomFrame()
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|
1224 |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1225 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
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ServerContext::DecodeDicomFrame()
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1226 unsigned int frameIndex) |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1227 { |
3931
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1228 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
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|
1229 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1230 std::unique_ptr<ImageAccessor> decoded( |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1231 DicomImageDecoder::Decode(dicom.GetParsedDicomFile(), frameIndex)); |
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1232 if (decoded.get() != NULL) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1233 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1234 return decoded.release(); |
e6606d3ec892
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1235 } |
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1236 } |
3928
4cdc875510d1
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1237 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1238 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1239 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1240 GetPlugins().HasCustomImageDecoder()) |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1241 { |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1242 std::unique_ptr<ImageAccessor> decoded( |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1243 GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1244 if (decoded.get() != NULL) |
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ServerContext::DecodeDicomFrame()
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|
1245 { |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1246 return decoded.release(); |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1247 } |
3931
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1248 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1249 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1250 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1251 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1252 } |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1253 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1254 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1255 |
3931
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1256 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1257 { |
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1258 return DicomImageDecoder::Decode(dicom.GetParsedDicomFile(), frameIndex); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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|
1259 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1260 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1261 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1262 return NULL; |
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1263 } |
3928
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1264 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1265 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1266 |
3894
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Sebastien Jodogne <s.jodogne@gmail.com>
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3839
diff
changeset
|
1267 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
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diff
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|
1268 std::string& sopInstanceUid, |
8f7ad4989fec
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diff
changeset
|
1269 DicomStoreUserConnection& connection, |
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changeset
|
1270 const std::string& dicom, |
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|
1271 bool hasMoveOriginator, |
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diff
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|
1272 const std::string& moveOriginatorAet, |
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diff
changeset
|
1273 uint16_t moveOriginatorId) |
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changeset
|
1274 { |
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changeset
|
1275 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
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diff
changeset
|
1276 |
3911
0ef7f4528be2
renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
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3910
diff
changeset
|
1277 if (!transcodeDicomProtocol_ || |
3894
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diff
changeset
|
1278 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
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changeset
|
1279 { |
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diff
changeset
|
1280 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
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changeset
|
1281 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
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changeset
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1282 } |
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changeset
|
1283 else |
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changeset
|
1284 { |
3930
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diff
changeset
|
1285 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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3911
diff
changeset
|
1286 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
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diff
changeset
|
1287 } |
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|
1288 } |
3930
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|
1289 |
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diff
changeset
|
1290 |
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diff
changeset
|
1291 bool ServerContext::TranscodeParsedToBuffer(std::string& target /* out */, |
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changeset
|
1292 bool& hasSopInstanceUidChanged /* out */, |
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changeset
|
1293 DcmFileFormat& dicom /* in, possibly modified */, |
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diff
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1294 DicomTransferSyntax targetSyntax, |
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1295 bool allowNewSopInstanceUid) |
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1296 { |
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1297 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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1298 { |
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1299 if (dcmtkTranscoder_->TranscodeParsedToBuffer(target, hasSopInstanceUidChanged, dicom, |
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1300 targetSyntax, allowNewSopInstanceUid)) |
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1301 { |
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1302 return true; |
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1303 } |
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1304 } |
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1305 |
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1306 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1307 if (HasPlugins() && |
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1308 GetPlugins().HasCustomTranscoder()) |
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1309 { |
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1310 if (GetPlugins().TranscodeParsedToBuffer(target, hasSopInstanceUidChanged, dicom, |
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1311 targetSyntax, allowNewSopInstanceUid)) |
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1312 { |
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1313 return true; |
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1314 } |
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1315 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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1316 { |
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1317 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
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1318 << "fallback to the built-in DCMTK transcoder"; |
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1319 } |
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1320 } |
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1321 #endif |
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1322 |
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1323 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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1324 { |
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1325 return dcmtkTranscoder_->TranscodeParsedToBuffer(target, hasSopInstanceUidChanged, dicom, |
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1326 targetSyntax, allowNewSopInstanceUid); |
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1327 } |
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1328 else |
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1329 { |
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1330 return false; |
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1331 } |
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1332 } |
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1333 |
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1334 |
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1335 IDicomTranscoder::TranscodedDicom* |
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1336 ServerContext::TranscodeToParsed(DcmFileFormat& dicom, |
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1337 const void* buffer, |
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1338 size_t size, |
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1339 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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1340 bool allowNewSopInstanceUid) |
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1341 { |
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1342 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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1343 { |
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1344 std::unique_ptr<IDicomTranscoder::TranscodedDicom> transcoded( |
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1345 dcmtkTranscoder_->TranscodeToParsed(dicom, buffer, size, allowedSyntaxes, |
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1346 allowNewSopInstanceUid)); |
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1347 if (transcoded.get() != NULL) |
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1348 { |
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1349 return transcoded.release(); |
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1350 } |
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1351 } |
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1352 |
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1353 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1354 if (HasPlugins() && |
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1355 GetPlugins().HasCustomTranscoder()) |
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1356 { |
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1357 std::unique_ptr<IDicomTranscoder::TranscodedDicom> transcoded( |
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1358 GetPlugins().TranscodeToParsed(dicom, buffer, size, allowedSyntaxes, allowNewSopInstanceUid)); |
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1359 |
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1360 if (transcoded.get() != NULL) |
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1361 { |
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1362 return transcoded.release(); |
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1363 } |
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1364 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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1365 { |
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1366 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
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1367 << "fallback to the built-in DCMTK transcoder"; |
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1368 } |
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1369 } |
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1370 #endif |
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1371 |
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1372 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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1373 { |
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1374 return dcmtkTranscoder_->TranscodeToParsed( |
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1375 dicom, buffer, size, allowedSyntaxes, allowNewSopInstanceUid); |
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1376 } |
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1377 else |
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1378 { |
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1379 return NULL; |
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1380 } |
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1381 } |
224 | 1382 } |