Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2209:e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 09 Dec 2016 17:20:21 +0100 |
parents | 90ea60bee5ff |
children | 4f39ab2cb453 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
0 | 34 #include "ServerIndex.h" |
35 | |
6 | 36 #ifndef NOMINMAX |
2 | 37 #define NOMINMAX |
6 | 38 #endif |
39 | |
1198 | 40 #include "ServerIndexChange.h" |
8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
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43 #include "ParsedDicomFile.h" |
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44 #include "ServerToolbox.h" |
0 | 45 #include "../Core/Toolbox.h" |
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46 #include "../Core/Logging.h" |
0 | 47 #include "../Core/DicomFormat/DicomArray.h" |
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48 |
0 | 49 #include "FromDcmtkBridge.h" |
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50 #include "ServerContext.h" |
1822 | 51 #include "DicomInstanceToStore.h" |
2122 | 52 #include "Search/LookupResource.h" |
0 | 53 |
54 #include <boost/lexical_cast.hpp> | |
55 #include <stdio.h> | |
56 | |
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57 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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58 |
62 | 59 namespace Orthanc |
0 | 60 { |
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61 class ServerIndex::Listener : public IDatabaseListener |
0 | 62 { |
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63 private: |
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64 struct FileToRemove |
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65 { |
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66 private: |
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67 std::string uuid_; |
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68 FileContentType type_; |
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69 |
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70 public: |
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71 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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72 type_(info.GetContentType()) |
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73 { |
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74 } |
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75 |
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76 const std::string& GetUuid() const |
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77 { |
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78 return uuid_; |
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79 } |
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80 |
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81 FileContentType GetContentType() const |
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82 { |
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83 return type_; |
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84 } |
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85 }; |
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86 |
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87 ServerContext& context_; |
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88 bool hasRemainingLevel_; |
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89 ResourceType remainingType_; |
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90 std::string remainingPublicId_; |
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91 std::list<FileToRemove> pendingFilesToRemove_; |
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92 std::list<ServerIndexChange> pendingChanges_; |
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93 uint64_t sizeOfFilesToRemove_; |
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94 bool insideTransaction_; |
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95 |
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96 void Reset() |
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97 { |
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98 sizeOfFilesToRemove_ = 0; |
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99 hasRemainingLevel_ = false; |
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100 pendingFilesToRemove_.clear(); |
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101 pendingChanges_.clear(); |
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102 } |
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103 |
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104 public: |
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105 Listener(ServerContext& context) : context_(context), |
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106 insideTransaction_(false) |
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107 { |
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108 Reset(); |
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109 assert(ResourceType_Patient < ResourceType_Study && |
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110 ResourceType_Study < ResourceType_Series && |
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111 ResourceType_Series < ResourceType_Instance); |
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112 } |
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113 |
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114 void StartTransaction() |
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115 { |
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116 Reset(); |
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117 insideTransaction_ = true; |
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118 } |
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119 |
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120 void EndTransaction() |
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121 { |
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122 insideTransaction_ = false; |
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123 } |
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124 |
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125 uint64_t GetSizeOfFilesToRemove() |
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126 { |
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127 return sizeOfFilesToRemove_; |
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128 } |
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129 |
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130 void CommitFilesToRemove() |
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131 { |
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132 for (std::list<FileToRemove>::const_iterator |
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133 it = pendingFilesToRemove_.begin(); |
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134 it != pendingFilesToRemove_.end(); ++it) |
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135 { |
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136 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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137 } |
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138 } |
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139 |
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140 void CommitChanges() |
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141 { |
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142 for (std::list<ServerIndexChange>::const_iterator |
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143 it = pendingChanges_.begin(); |
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144 it != pendingChanges_.end(); ++it) |
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145 { |
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146 context_.SignalChange(*it); |
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147 } |
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148 } |
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149 |
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150 virtual void SignalRemainingAncestor(ResourceType parentType, |
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151 const std::string& publicId) |
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152 { |
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153 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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154 |
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155 if (hasRemainingLevel_) |
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156 { |
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157 if (parentType < remainingType_) |
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158 { |
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159 remainingType_ = parentType; |
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160 remainingPublicId_ = publicId; |
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161 } |
1158 | 162 } |
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163 else |
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164 { |
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165 hasRemainingLevel_ = true; |
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166 remainingType_ = parentType; |
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167 remainingPublicId_ = publicId; |
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168 } |
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169 } |
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170 |
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171 virtual void SignalFileDeleted(const FileInfo& info) |
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172 { |
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173 assert(Toolbox::IsUuid(info.GetUuid())); |
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174 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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175 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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176 } |
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177 |
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178 virtual void SignalChange(const ServerIndexChange& change) |
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179 { |
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180 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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181 << EnumerationToString(change.GetResourceType()) << ": " |
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182 << EnumerationToString(change.GetChangeType()); |
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183 |
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184 if (insideTransaction_) |
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185 { |
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186 pendingChanges_.push_back(change); |
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187 } |
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188 else |
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189 { |
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190 context_.SignalChange(change); |
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191 } |
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192 } |
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193 |
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194 bool HasRemainingLevel() const |
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195 { |
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196 return hasRemainingLevel_; |
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197 } |
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198 |
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199 ResourceType GetRemainingType() const |
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200 { |
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201 assert(HasRemainingLevel()); |
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202 return remainingType_; |
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203 } |
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204 |
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205 const std::string& GetRemainingPublicId() const |
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206 { |
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207 assert(HasRemainingLevel()); |
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208 return remainingPublicId_; |
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209 } |
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210 }; |
0 | 211 |
212 | |
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213 class ServerIndex::Transaction |
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214 { |
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215 private: |
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216 ServerIndex& index_; |
1235 | 217 std::auto_ptr<SQLite::ITransaction> transaction_; |
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218 bool isCommitted_; |
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219 |
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220 public: |
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221 Transaction(ServerIndex& index) : |
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222 index_(index), |
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223 isCommitted_(false) |
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224 { |
1247 | 225 transaction_.reset(index_.db_.StartTransaction()); |
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226 transaction_->Begin(); |
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227 |
1270 | 228 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
229 | |
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230 index_.listener_->StartTransaction(); |
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231 } |
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232 |
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233 ~Transaction() |
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234 { |
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235 index_.listener_->EndTransaction(); |
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236 |
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237 if (!isCommitted_) |
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238 { |
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239 transaction_->Rollback(); |
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240 } |
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241 } |
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242 |
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243 void Commit(uint64_t sizeOfAddedFiles) |
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244 { |
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245 if (!isCommitted_) |
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246 { |
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247 transaction_->Commit(); |
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248 |
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249 // We can remove the files once the SQLite transaction has |
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250 // been successfully committed. Some files might have to be |
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251 // deleted because of recycling. |
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252 index_.listener_->CommitFilesToRemove(); |
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253 |
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254 index_.currentStorageSize_ += sizeOfAddedFiles; |
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255 |
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256 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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257 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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258 |
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259 // Send all the pending changes to the Orthanc plugins |
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260 index_.listener_->CommitChanges(); |
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261 |
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262 isCommitted_ = true; |
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263 } |
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264 } |
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265 }; |
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266 |
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267 |
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268 class ServerIndex::UnstableResourcePayload |
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269 { |
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270 private: |
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271 ResourceType type_; |
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272 std::string publicId_; |
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273 boost::posix_time::ptime time_; |
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274 |
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275 public: |
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276 UnstableResourcePayload() : type_(ResourceType_Instance) |
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277 { |
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278 } |
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279 |
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280 UnstableResourcePayload(Orthanc::ResourceType type, |
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281 const std::string& publicId) : |
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282 type_(type), |
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283 publicId_(publicId) |
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284 { |
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285 time_ = boost::posix_time::second_clock::local_time(); |
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286 } |
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287 |
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288 unsigned int GetAge() const |
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289 { |
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290 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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291 } |
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292 |
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293 ResourceType GetResourceType() const |
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294 { |
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295 return type_; |
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296 } |
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297 |
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298 const std::string& GetPublicId() const |
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299 { |
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300 return publicId_; |
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301 } |
511
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302 }; |
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303 |
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304 |
212 | 305 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 306 const std::string& uuid, |
202 | 307 ResourceType expectedType) |
0 | 308 { |
206
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309 boost::mutex::scoped_lock lock(mutex_); |
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310 |
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311 Transaction t(*this); |
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312 |
202 | 313 int64_t id; |
314 ResourceType type; | |
1294 | 315 if (!db_.LookupResource(id, type, uuid) || |
202 | 316 expectedType != type) |
0 | 317 { |
318 return false; | |
319 } | |
202 | 320 |
1247 | 321 db_.DeleteResource(id); |
0 | 322 |
202 | 323 if (listener_->HasRemainingLevel()) |
0 | 324 { |
202 | 325 ResourceType type = listener_->GetRemainingType(); |
326 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 327 |
328 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 329 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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330 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 331 target["RemainingAncestor"]["ID"] = uuid; |
332 } | |
333 else | |
334 { | |
335 target["RemainingAncestor"] = Json::nullValue; | |
336 } | |
337 | |
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338 t.Commit(0); |
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339 |
0 | 340 return true; |
341 } | |
342 | |
343 | |
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344 void ServerIndex::FlushThread(ServerIndex* that) |
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345 { |
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346 // By default, wait for 10 seconds before flushing |
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347 unsigned int sleep = 10; |
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348 |
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349 try |
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350 { |
744 | 351 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 352 std::string sleepString; |
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353 |
1247 | 354 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 355 Toolbox::IsInteger(sleepString)) |
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356 { |
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357 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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358 } |
511
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359 } |
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360 catch (boost::bad_lexical_cast&) |
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361 { |
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362 } |
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363 |
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364 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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365 |
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366 unsigned int count = 0; |
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367 |
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368 while (!that->done_) |
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369 { |
511
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370 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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371 count++; |
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372 if (count < sleep) |
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373 { |
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374 continue; |
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375 } |
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376 |
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377 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 378 that->db_.FlushToDisk(); |
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379 count = 0; |
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380 } |
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381 |
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382 LOG(INFO) << "Stopping the database flushing thread"; |
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383 } |
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384 |
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385 |
1247 | 386 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 387 int64_t series, |
388 const DicomMap& dicomSummary) | |
389 { | |
390 try | |
391 { | |
656 | 392 const DicomValue* value; |
393 const DicomValue* value2; | |
394 | |
433 | 395 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
396 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
397 { | |
398 // Patch for series with temporal positions thanks to Will Ryder | |
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399 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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400 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 401 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
402 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
403 } | |
404 | |
405 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
406 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
407 { | |
408 // Support of Cardio-PET images | |
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409 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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410 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 411 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
412 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
413 } | |
414 | |
415 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
416 { | |
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417 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 418 } |
419 } | |
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420 catch (OrthancException&) |
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421 { |
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422 } |
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423 catch (boost::bad_lexical_cast&) |
433 | 424 { |
425 } | |
426 } | |
427 | |
428 | |
1237 | 429 |
430 | |
1238 | 431 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 432 int64_t id, |
433 MetadataType type) | |
434 { | |
1238 | 435 std::string s; |
1247 | 436 if (!db_.LookupMetadata(s, id, type)) |
1237 | 437 { |
438 return false; | |
439 } | |
440 | |
441 try | |
442 { | |
1238 | 443 result = boost::lexical_cast<int64_t>(s); |
1237 | 444 return true; |
445 } | |
446 catch (boost::bad_lexical_cast&) | |
447 { | |
448 return false; | |
449 } | |
450 } | |
451 | |
452 | |
1297 | 453 void ServerIndex::LogChange(int64_t internalId, |
454 ChangeType changeType, | |
455 ResourceType resourceType, | |
456 const std::string& publicId) | |
457 { | |
458 ServerIndexChange change(changeType, resourceType, publicId); | |
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459 |
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460 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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461 { |
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462 db_.LogChange(internalId, change); |
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463 } |
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464 |
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465 assert(listener_.get() != NULL); |
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466 listener_->SignalChange(change); |
1297 | 467 } |
468 | |
1237 | 469 |
470 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
471 { | |
472 std::string oldValue; | |
473 | |
1247 | 474 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 475 { |
476 uint64_t oldNumber; | |
477 | |
478 try | |
479 { | |
480 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 481 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 482 return oldNumber + 1; |
483 } | |
484 catch (boost::bad_lexical_cast&) | |
485 { | |
486 throw OrthancException(ErrorCode_InternalError); | |
487 } | |
488 } | |
489 else | |
490 { | |
491 // Initialize the sequence at "1" | |
1247 | 492 db_.SetGlobalProperty(property, "1"); |
1237 | 493 return 1; |
494 } | |
495 } | |
496 | |
497 | |
498 | |
1299 | 499 int64_t ServerIndex::CreateResource(const std::string& publicId, |
500 ResourceType type) | |
501 { | |
502 int64_t id = db_.CreateResource(publicId, type); | |
503 | |
504 ChangeType changeType; | |
505 switch (type) | |
506 { | |
507 case ResourceType_Patient: | |
508 changeType = ChangeType_NewPatient; | |
509 break; | |
510 | |
511 case ResourceType_Study: | |
512 changeType = ChangeType_NewStudy; | |
513 break; | |
514 | |
515 case ResourceType_Series: | |
516 changeType = ChangeType_NewSeries; | |
517 break; | |
518 | |
519 case ResourceType_Instance: | |
520 changeType = ChangeType_NewInstance; | |
521 break; | |
522 | |
523 default: | |
524 throw OrthancException(ErrorCode_InternalError); | |
525 } | |
526 | |
527 ServerIndexChange change(changeType, type, publicId); | |
528 db_.LogChange(id, change); | |
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529 |
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530 assert(listener_.get() != NULL); |
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531 listener_->SignalChange(change); |
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532 |
1299 | 533 return id; |
534 } | |
535 | |
1286 | 536 |
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537 ServerIndex::ServerIndex(ServerContext& context, |
1247 | 538 IDatabaseWrapper& db) : |
511
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539 done_(false), |
1247 | 540 db_(db), |
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541 maximumStorageSize_(0), |
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542 maximumPatients_(0) |
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543 { |
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544 listener_.reset(new Listener(context)); |
1247 | 545 db_.SetListener(*listener_); |
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546 |
1247 | 547 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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548 |
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549 // Initial recycling if the parameters have changed since the last |
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550 // execution of Orthanc |
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551 StandaloneRecycling(); |
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552 |
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553 if (db.HasFlushToDisk()) |
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554 { |
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555 flushThread_ = boost::thread(FlushThread, this); |
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556 } |
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557 |
511
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558 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
206
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559 } |
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560 |
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561 |
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562 |
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563 ServerIndex::~ServerIndex() |
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564 { |
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565 if (!done_) |
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566 { |
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567 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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568 Stop(); |
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569 } |
0 | 570 } |
571 | |
572 | |
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573 |
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574 void ServerIndex::Stop() |
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575 { |
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576 if (!done_) |
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577 { |
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578 done_ = true; |
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579 |
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580 if (db_.HasFlushToDisk() && |
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581 flushThread_.joinable()) |
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582 { |
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583 flushThread_.join(); |
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584 } |
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585 |
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586 if (unstableResourcesMonitorThread_.joinable()) |
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587 { |
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588 unstableResourcesMonitorThread_.join(); |
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589 } |
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590 } |
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591 } |
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592 |
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593 |
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594 |
2188 | 595 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
596 int64_t instance, | |
597 MetadataType metadata, | |
598 const std::string& value) | |
599 { | |
600 db_.SetMetadata(instance, metadata, value); | |
601 instanceMetadata[metadata] = value; | |
602 } | |
603 | |
604 | |
605 | |
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606 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 607 DicomInstanceToStore& instanceToStore, |
608 const Attachments& attachments) | |
0 | 609 { |
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610 boost::mutex::scoped_lock lock(mutex_); |
0 | 611 |
1822 | 612 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
613 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
614 | |
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615 instanceMetadata.clear(); |
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616 |
1822 | 617 DicomInstanceHasher hasher(instanceToStore.GetSummary()); |
0 | 618 |
619 try | |
620 { | |
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621 Transaction t(*this); |
0 | 622 |
202 | 623 // Do nothing if the instance already exists |
0 | 624 { |
432 | 625 ResourceType type; |
626 int64_t tmp; | |
1294 | 627 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
432 | 628 { |
629 assert(type == ResourceType_Instance); | |
1247 | 630 db_.GetAllMetadata(instanceMetadata, tmp); |
432 | 631 return StoreStatus_AlreadyStored; |
632 } | |
0 | 633 } |
634 | |
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635 // Ensure there is enough room in the storage for the new instance |
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636 uint64_t instanceSize = 0; |
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637 for (Attachments::const_iterator it = attachments.begin(); |
656 | 638 it != attachments.end(); ++it) |
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639 { |
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640 instanceSize += it->GetCompressedSize(); |
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641 } |
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642 |
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643 Recycle(instanceSize, hasher.HashPatient()); |
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644 |
202 | 645 // Create the instance |
1299 | 646 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
2120 | 647 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 648 |
432 | 649 // Detect up to which level the patient/study/series/instance |
650 // hierarchy must be created | |
651 int64_t patient = -1, study = -1, series = -1; | |
652 bool isNewPatient = false; | |
653 bool isNewStudy = false; | |
654 bool isNewSeries = false; | |
655 | |
0 | 656 { |
432 | 657 ResourceType dummy; |
658 | |
1294 | 659 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
432 | 660 { |
661 assert(dummy == ResourceType_Series); | |
662 // The patient, the study and the series already exist | |
663 | |
1294 | 664 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
665 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
432 | 666 assert(ok); |
667 } | |
1294 | 668 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
432 | 669 { |
670 assert(dummy == ResourceType_Study); | |
671 | |
672 // New series: The patient and the study already exist | |
673 isNewSeries = true; | |
674 | |
1294 | 675 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
432 | 676 assert(ok); |
677 } | |
1294 | 678 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
432 | 679 { |
680 assert(dummy == ResourceType_Patient); | |
681 | |
682 // New study and series: The patient already exist | |
683 isNewStudy = true; | |
684 isNewSeries = true; | |
685 } | |
686 else | |
687 { | |
688 // New patient, study and series: Nothing exists | |
689 isNewPatient = true; | |
690 isNewStudy = true; | |
691 isNewSeries = true; | |
692 } | |
693 } | |
694 | |
695 // Create the series if needed | |
696 if (isNewSeries) | |
697 { | |
1299 | 698 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
2120 | 699 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 700 } |
202 | 701 |
432 | 702 // Create the study if needed |
703 if (isNewStudy) | |
704 { | |
1299 | 705 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
2120 | 706 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 707 } |
708 | |
709 // Create the patient if needed | |
710 if (isNewPatient) | |
711 { | |
1299 | 712 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
2120 | 713 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 714 } |
202 | 715 |
432 | 716 // Create the parent-to-child links |
1247 | 717 db_.AttachChild(series, instance); |
432 | 718 |
719 if (isNewSeries) | |
720 { | |
1247 | 721 db_.AttachChild(study, series); |
0 | 722 } |
432 | 723 |
724 if (isNewStudy) | |
0 | 725 { |
1247 | 726 db_.AttachChild(patient, study); |
0 | 727 } |
728 | |
432 | 729 // Sanity checks |
730 assert(patient != -1); | |
731 assert(study != -1); | |
732 assert(series != -1); | |
733 assert(instance != -1); | |
734 | |
202 | 735 // Attach the files to the newly created instance |
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736 for (Attachments::const_iterator it = attachments.begin(); |
656 | 737 it != attachments.end(); ++it) |
232
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738 { |
1247 | 739 db_.AddAttachment(instance, *it); |
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740 } |
202 | 741 |
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742 // Attach the user-specified metadata |
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743 for (MetadataMap::const_iterator |
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744 it = metadata.begin(); it != metadata.end(); ++it) |
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745 { |
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746 switch (it->first.first) |
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747 { |
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748 case ResourceType_Patient: |
1247 | 749 db_.SetMetadata(patient, it->first.second, it->second); |
1006
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750 break; |
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751 |
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752 case ResourceType_Study: |
1247 | 753 db_.SetMetadata(study, it->first.second, it->second); |
1006
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754 break; |
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755 |
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756 case ResourceType_Series: |
1247 | 757 db_.SetMetadata(series, it->first.second, it->second); |
1006
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758 break; |
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759 |
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760 case ResourceType_Instance: |
2188 | 761 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
1006
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762 break; |
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763 |
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764 default: |
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765 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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766 } |
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767 } |
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768 |
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changeset
|
769 // Attach the auto-computed metadata for the patient/study/series levels |
2140 | 770 std::string now = SystemToolbox::GetNowIsoString(); |
1247 | 771 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
772 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
773 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
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|
774 |
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775 // Attach the auto-computed metadata for the instance level, |
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776 // reflecting these additions into the input metadata map |
2188 | 777 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
778 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, instanceToStore.GetRemoteAet()); | |
2189
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779 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
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780 EnumerationToString(instanceToStore.GetRequestOrigin())); |
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|
781 |
1823
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782 { |
2189
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783 std::string s; |
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784 if (instanceToStore.LookupTransferSyntax(s)) |
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785 { |
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786 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
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787 } |
1823
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788 } |
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789 |
202 | 790 const DicomValue* value; |
2208
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791 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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792 !value->IsNull() && |
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793 !value->IsBinary()) |
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794 { |
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795 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
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796 } |
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|
797 |
202 | 798 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
799 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 800 { |
1737
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801 if (!value->IsNull() && |
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802 !value->IsBinary()) |
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803 { |
2188 | 804 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
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805 } |
0 | 806 } |
807 | |
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|
808 // Check whether the series of this new instance is now completed |
202 | 809 if (isNewSeries) |
810 { | |
1247 | 811 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 812 } |
813 | |
205
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814 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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815 if (seriesStatus == SeriesStatus_Complete) |
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816 { |
1237 | 817 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
205
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|
818 } |
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819 |
511
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diff
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|
820 // Mark the parent resources of this instance as unstable |
1177
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821 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
5b2d8c280ac2
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|
822 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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|
823 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
511
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824 |
278
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825 t.Commit(instanceSize); |
268
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826 |
0 | 827 return StoreStatus_Success; |
828 } | |
62 | 829 catch (OrthancException& e) |
0 | 830 { |
1247 | 831 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 832 } |
833 | |
834 return StoreStatus_Failure; | |
835 } | |
836 | |
837 | |
238 | 838 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 839 { |
206
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840 boost::mutex::scoped_lock lock(mutex_); |
238 | 841 target = Json::objectValue; |
0 | 842 |
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|
843 uint64_t cs = currentStorageSize_; |
1247 | 844 assert(cs == db_.GetTotalCompressedSize()); |
845 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
23e5b35e3c5c
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438
diff
changeset
|
846 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 847 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
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1306
diff
changeset
|
848 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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|
849 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 850 |
1247 | 851 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
852 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
853 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
854 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 855 } |
856 | |
187
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|
857 |
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|
858 |
585 | 859 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 860 { |
861 // Get the expected number of instances in this series (from the metadata) | |
1238 | 862 int64_t expected; |
863 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 864 { |
865 return SeriesStatus_Unknown; | |
866 } | |
867 | |
868 // Loop over the instances of this series | |
869 std::list<int64_t> children; | |
1247 | 870 db_.GetChildrenInternalId(children, id); |
199 | 871 |
1238 | 872 std::set<int64_t> instances; |
199 | 873 for (std::list<int64_t>::const_iterator |
656 | 874 it = children.begin(); it != children.end(); ++it) |
199 | 875 { |
876 // Get the index of this instance in the series | |
1238 | 877 int64_t index; |
878 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 879 { |
880 return SeriesStatus_Unknown; | |
881 } | |
882 | |
656 | 883 if (!(index > 0 && index <= expected)) |
199 | 884 { |
885 // Out-of-range instance index | |
886 return SeriesStatus_Inconsistent; | |
887 } | |
888 | |
889 if (instances.find(index) != instances.end()) | |
890 { | |
891 // Twice the same instance index | |
892 return SeriesStatus_Inconsistent; | |
893 } | |
894 | |
895 instances.insert(index); | |
896 } | |
897 | |
1238 | 898 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 899 { |
900 return SeriesStatus_Complete; | |
901 } | |
902 else | |
903 { | |
904 return SeriesStatus_Missing; | |
905 } | |
906 } | |
907 | |
908 | |
202 | 909 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
910 int64_t resourceId, |
de1413733c97
reconstructing main dicom tags
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diff
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|
911 ResourceType resourceType) |
198
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|
912 { |
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|
913 DicomMap tags; |
1247 | 914 db_.GetMainDicomTags(tags, resourceId); |
1676
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
915 |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
916 if (resourceType == ResourceType_Study) |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
917 { |
f079f3efe33b
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parents:
1668
diff
changeset
|
918 DicomMap t1, t2; |
f079f3efe33b
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diff
changeset
|
919 tags.ExtractStudyInformation(t1); |
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parents:
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diff
changeset
|
920 tags.ExtractPatientInformation(t2); |
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diff
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|
921 |
f079f3efe33b
patient tags reported in studies
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diff
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|
922 target["MainDicomTags"] = Json::objectValue; |
f079f3efe33b
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diff
changeset
|
923 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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diff
changeset
|
924 |
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diff
changeset
|
925 target["PatientMainDicomTags"] = Json::objectValue; |
f079f3efe33b
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diff
changeset
|
926 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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diff
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|
927 } |
f079f3efe33b
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parents:
1668
diff
changeset
|
928 else |
f079f3efe33b
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parents:
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diff
changeset
|
929 { |
f079f3efe33b
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parents:
1668
diff
changeset
|
930 target["MainDicomTags"] = Json::objectValue; |
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1668
diff
changeset
|
931 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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932 } |
198
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933 } |
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934 |
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|
935 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 936 const std::string& publicId, |
937 ResourceType expectedType) | |
198
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938 { |
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939 result = Json::objectValue; |
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940 |
206
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941 boost::mutex::scoped_lock lock(mutex_); |
199 | 942 |
198
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943 // Lookup for the requested resource |
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944 int64_t id; |
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945 ResourceType type; |
1294 | 946 if (!db_.LookupResource(id, type, publicId) || |
199 | 947 type != expectedType) |
198
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948 { |
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949 return false; |
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950 } |
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951 |
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952 // Find the parent resource (if it exists) |
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953 if (type != ResourceType_Patient) |
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954 { |
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|
955 int64_t parentId; |
1247 | 956 if (!db_.LookupParent(parentId, id)) |
198
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957 { |
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958 throw OrthancException(ErrorCode_InternalError); |
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959 } |
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960 |
1247 | 961 std::string parent = db_.GetPublicId(parentId); |
198
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962 |
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963 switch (type) |
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|
964 { |
269
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diff
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|
965 case ResourceType_Study: |
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diff
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|
966 result["ParentPatient"] = parent; |
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diff
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|
967 break; |
198
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diff
changeset
|
968 |
269
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diff
changeset
|
969 case ResourceType_Series: |
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diff
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|
970 result["ParentStudy"] = parent; |
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diff
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|
971 break; |
198
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diff
changeset
|
972 |
269
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diff
changeset
|
973 case ResourceType_Instance: |
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diff
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|
974 result["ParentSeries"] = parent; |
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diff
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|
975 break; |
198
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diff
changeset
|
976 |
269
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diff
changeset
|
977 default: |
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diff
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|
978 throw OrthancException(ErrorCode_InternalError); |
198
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before refactoring of ServerIndex::GetXXX
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diff
changeset
|
979 } |
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diff
changeset
|
980 } |
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diff
changeset
|
981 |
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diff
changeset
|
982 // List the children resources |
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before refactoring of ServerIndex::GetXXX
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diff
changeset
|
983 std::list<std::string> children; |
1247 | 984 db_.GetChildrenPublicId(children, id); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
985 |
663cc6c46d0a
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diff
changeset
|
986 if (type != ResourceType_Instance) |
663cc6c46d0a
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diff
changeset
|
987 { |
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diff
changeset
|
988 Json::Value c = Json::arrayValue; |
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197
diff
changeset
|
989 |
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197
diff
changeset
|
990 for (std::list<std::string>::const_iterator |
656 | 991 it = children.begin(); it != children.end(); ++it) |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
992 { |
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diff
changeset
|
993 c.append(*it); |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
994 } |
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197
diff
changeset
|
995 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
996 switch (type) |
663cc6c46d0a
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diff
changeset
|
997 { |
269
f6fdf5abe751
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diff
changeset
|
998 case ResourceType_Patient: |
f6fdf5abe751
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diff
changeset
|
999 result["Studies"] = c; |
f6fdf5abe751
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parents:
268
diff
changeset
|
1000 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1001 |
269
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diff
changeset
|
1002 case ResourceType_Study: |
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parents:
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diff
changeset
|
1003 result["Series"] = c; |
f6fdf5abe751
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parents:
268
diff
changeset
|
1004 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1005 |
269
f6fdf5abe751
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diff
changeset
|
1006 case ResourceType_Series: |
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diff
changeset
|
1007 result["Instances"] = c; |
f6fdf5abe751
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diff
changeset
|
1008 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1009 |
269
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diff
changeset
|
1010 default: |
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diff
changeset
|
1011 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
1012 } |
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diff
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|
1013 } |
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diff
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|
1014 |
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diff
changeset
|
1015 // Set the resource type |
663cc6c46d0a
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diff
changeset
|
1016 switch (type) |
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diff
changeset
|
1017 { |
269
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268
diff
changeset
|
1018 case ResourceType_Patient: |
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diff
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|
1019 result["Type"] = "Patient"; |
f6fdf5abe751
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268
diff
changeset
|
1020 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
1021 |
269
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268
diff
changeset
|
1022 case ResourceType_Study: |
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268
diff
changeset
|
1023 result["Type"] = "Study"; |
f6fdf5abe751
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268
diff
changeset
|
1024 break; |
199 | 1025 |
269
f6fdf5abe751
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268
diff
changeset
|
1026 case ResourceType_Series: |
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diff
changeset
|
1027 { |
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268
diff
changeset
|
1028 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1029 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
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|
1030 |
1238 | 1031 int64_t i; |
1237 | 1032 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1033 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
f6fdf5abe751
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268
diff
changeset
|
1034 else |
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268
diff
changeset
|
1035 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1036 |
269
f6fdf5abe751
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268
diff
changeset
|
1037 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1038 } |
9c58b2b03cf0
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parents:
199
diff
changeset
|
1039 |
269
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diff
changeset
|
1040 case ResourceType_Instance: |
f6fdf5abe751
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268
diff
changeset
|
1041 { |
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diff
changeset
|
1042 result["Type"] = "Instance"; |
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diff
changeset
|
1043 |
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268
diff
changeset
|
1044 FileInfo attachment; |
1247 | 1045 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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268
diff
changeset
|
1046 { |
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diff
changeset
|
1047 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
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268
diff
changeset
|
1048 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
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199
diff
changeset
|
1049 |
269
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268
diff
changeset
|
1050 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
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268
diff
changeset
|
1051 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1052 |
1238 | 1053 int64_t i; |
1237 | 1054 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1055 result["IndexInSeries"] = static_cast<int>(i); |
269
f6fdf5abe751
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diff
changeset
|
1056 else |
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diff
changeset
|
1057 result["IndexInSeries"] = Json::nullValue; |
198
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changeset
|
1058 |
269
f6fdf5abe751
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diff
changeset
|
1059 break; |
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diff
changeset
|
1060 } |
f6fdf5abe751
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diff
changeset
|
1061 |
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diff
changeset
|
1062 default: |
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diff
changeset
|
1063 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
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diff
changeset
|
1064 } |
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|
1065 |
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diff
changeset
|
1066 // Record the remaining information |
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diff
changeset
|
1067 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1068 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1069 |
315 | 1070 std::string tmp; |
1071 | |
1247 | 1072 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1073 { |
315 | 1074 result["AnonymizedFrom"] = tmp; |
1236 | 1075 } |
315 | 1076 |
1247 | 1077 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1078 { |
315 | 1079 result["ModifiedFrom"] = tmp; |
1236 | 1080 } |
315 | 1081 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1082 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1083 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1084 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1085 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1086 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1087 |
1247 | 1088 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1089 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1090 result["LastUpdate"] = tmp; |
1236 | 1091 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1092 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1093 |
198
663cc6c46d0a
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diff
changeset
|
1094 return true; |
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diff
changeset
|
1095 } |
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diff
changeset
|
1096 |
0 | 1097 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1098 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
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parents:
231
diff
changeset
|
1099 const std::string& instanceUuid, |
233 | 1100 FileContentType contentType) |
0 | 1101 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1102 boost::mutex::scoped_lock lock(mutex_); |
0 | 1103 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1104 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1105 ResourceType type; |
1294 | 1106 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1107 { |
1113
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1108 throw OrthancException(ErrorCode_UnknownResource); |
192
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1109 } |
193
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1110 |
1247 | 1111 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1112 { |
233 | 1113 assert(attachment.GetContentType() == contentType); |
232
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1114 return true; |
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1115 } |
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1116 else |
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1117 { |
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1118 return false; |
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1119 } |
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1120 } |
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1121 |
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1122 |
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1123 |
1354 | 1124 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1125 ResourceType resourceType) |
0 | 1126 { |
1357 | 1127 boost::mutex::scoped_lock lock(mutex_); |
1128 db_.GetAllPublicIds(target, resourceType); | |
0 | 1129 } |
1130 | |
1131 | |
1509
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1132 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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1133 ResourceType resourceType, |
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1134 size_t since, |
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1135 size_t limit) |
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1136 { |
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1137 if (limit == 0) |
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1138 { |
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1139 target.clear(); |
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1140 return; |
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1141 } |
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1142 |
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1143 boost::mutex::scoped_lock lock(mutex_); |
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1144 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1145 } |
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1146 |
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1147 |
1244 | 1148 template <typename T> |
1149 static void FormatLog(Json::Value& target, | |
1150 const std::list<T>& log, | |
1151 const std::string& name, | |
1152 bool done, | |
1153 int64_t since) | |
1240 | 1154 { |
1155 Json::Value items = Json::arrayValue; | |
1244 | 1156 for (typename std::list<T>::const_iterator |
1304 | 1157 it = log.begin(); it != log.end(); ++it) |
1240 | 1158 { |
1159 Json::Value item; | |
1160 it->Format(item); | |
1161 items.append(item); | |
1162 } | |
1163 | |
1164 target = Json::objectValue; | |
1244 | 1165 target[name] = items; |
1240 | 1166 target["Done"] = done; |
1167 | |
1305 | 1168 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1169 target["Last"] = static_cast<int>(last); |
1170 } | |
1171 | |
1172 | |
1247 | 1173 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1174 int64_t since, |
0 | 1175 unsigned int maxResults) |
1176 { | |
1240 | 1177 std::list<ServerIndexChange> changes; |
1178 bool done; | |
1179 | |
1180 { | |
1181 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1182 db_.GetChanges(changes, done, since, maxResults); |
1240 | 1183 } |
1184 | |
1244 | 1185 FormatLog(target, changes, "Changes", done, since); |
237
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1186 } |
0 | 1187 |
1240 | 1188 |
1247 | 1189 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1190 { |
1240 | 1191 std::list<ServerIndexChange> changes; |
1192 | |
1193 { | |
1194 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1195 db_.GetLastChange(changes); |
1240 | 1196 } |
1197 | |
1244 | 1198 FormatLog(target, changes, "Changes", true, 0); |
0 | 1199 } |
231 | 1200 |
1240 | 1201 |
231 | 1202 void ServerIndex::LogExportedResource(const std::string& publicId, |
1203 const std::string& remoteModality) | |
1204 { | |
1205 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1206 Transaction transaction(*this); |
231 | 1207 |
1208 int64_t id; | |
1209 ResourceType type; | |
1294 | 1210 if (!db_.LookupResource(id, type, publicId)) |
231 | 1211 { |
1212 throw OrthancException(ErrorCode_InternalError); | |
1213 } | |
1214 | |
1215 std::string patientId; | |
1216 std::string studyInstanceUid; | |
1217 std::string seriesInstanceUid; | |
1218 std::string sopInstanceUid; | |
1219 | |
1220 int64_t currentId = id; | |
1221 ResourceType currentType = type; | |
1222 | |
1223 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1224 bool done = false; | |
1225 while (!done) | |
1226 { | |
1227 DicomMap map; | |
1247 | 1228 db_.GetMainDicomTags(map, currentId); |
231 | 1229 |
1230 switch (currentType) | |
1231 { | |
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1232 case ResourceType_Patient: |
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1233 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1234 { |
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1235 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1236 } |
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1237 done = true; |
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1238 break; |
231 | 1239 |
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1240 case ResourceType_Study: |
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1241 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1242 { |
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1243 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1244 } |
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1245 currentType = ResourceType_Patient; |
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1246 break; |
231 | 1247 |
269
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1248 case ResourceType_Series: |
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1249 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1250 { |
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1251 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1252 } |
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1253 currentType = ResourceType_Study; |
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1254 break; |
231 | 1255 |
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1256 case ResourceType_Instance: |
2090
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1257 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1258 { |
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|
1259 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1260 } |
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1261 currentType = ResourceType_Series; |
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1262 break; |
231 | 1263 |
269
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1264 default: |
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1265 throw OrthancException(ErrorCode_InternalError); |
231 | 1266 } |
1267 | |
1268 // If we have not reached the Patient level, find the parent of | |
1269 // the current resource | |
1270 if (!done) | |
1271 { | |
1247 | 1272 bool ok = db_.LookupParent(currentId, currentId); |
375
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1273 assert(ok); |
231 | 1274 } |
1275 } | |
1276 | |
1246 | 1277 ExportedResource resource(-1, |
1278 type, | |
1279 publicId, | |
1280 remoteModality, | |
2140 | 1281 SystemToolbox::GetNowIsoString(), |
1246 | 1282 patientId, |
1283 studyInstanceUid, | |
1284 seriesInstanceUid, | |
1285 sopInstanceUid); | |
1310
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1286 |
1247 | 1287 db_.LogExportedResource(resource); |
1310
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|
1288 transaction.Commit(0); |
231 | 1289 } |
1290 | |
1291 | |
1247 | 1292 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1293 int64_t since, |
1294 unsigned int maxResults) | |
1295 { | |
1244 | 1296 std::list<ExportedResource> exported; |
1297 bool done; | |
1298 | |
1299 { | |
1300 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1301 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1302 } |
1303 | |
1304 FormatLog(target, exported, "Exports", done, since); | |
231 | 1305 } |
237
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1306 |
1244 | 1307 |
1247 | 1308 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1309 { |
1244 | 1310 std::list<ExportedResource> exported; |
1311 | |
1312 { | |
1313 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1314 db_.GetLastExportedResource(exported); |
1244 | 1315 } |
1316 | |
1317 FormatLog(target, exported, "Exports", true, 0); | |
237
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1318 } |
268
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1319 |
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1320 |
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1321 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1322 { |
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1323 if (maximumStorageSize_ != 0) |
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1324 { |
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1325 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1326 assert(db_.GetTotalCompressedSize() == currentSize); |
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1327 |
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1328 if (currentSize + instanceSize > maximumStorageSize_) |
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1329 { |
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1330 return true; |
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1331 } |
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1332 } |
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1333 |
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1334 if (maximumPatients_ != 0) |
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1335 { |
1247 | 1336 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1337 if (patientCount > maximumPatients_) |
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1338 { |
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1339 return true; |
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1340 } |
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1341 } |
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1342 |
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1343 return false; |
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1344 } |
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1345 |
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1346 |
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1347 void ServerIndex::Recycle(uint64_t instanceSize, |
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1348 const std::string& newPatientId) |
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1349 { |
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1350 if (!IsRecyclingNeeded(instanceSize)) |
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1351 { |
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1352 return; |
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1353 } |
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1354 |
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1355 // Check whether other DICOM instances from this patient are |
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1356 // already stored |
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1357 int64_t patientToAvoid; |
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1358 ResourceType type; |
1294 | 1359 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1360 |
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1361 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1362 { |
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1363 throw OrthancException(ErrorCode_InternalError); |
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1364 } |
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1365 |
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1366 // Iteratively select patient to remove until there is enough |
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1367 // space in the DICOM store |
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1368 int64_t patientToRecycle; |
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1369 while (true) |
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1370 { |
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1371 // If other instances of this patient are already in the store, |
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1372 // we must avoid to recycle them |
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1373 bool ok = hasPatientToAvoid ? |
1247 | 1374 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1375 db_.SelectPatientToRecycle(patientToRecycle); | |
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1376 |
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1377 if (!ok) |
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1378 { |
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1379 throw OrthancException(ErrorCode_FullStorage); |
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1380 } |
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1381 |
1331
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1382 VLOG(1) << "Recycling one patient"; |
1247 | 1383 db_.DeleteResource(patientToRecycle); |
269
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1384 |
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1385 if (!IsRecyclingNeeded(instanceSize)) |
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1386 { |
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1387 // OK, we're done |
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1388 break; |
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1389 } |
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1390 } |
268
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1391 } |
269
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1392 |
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1393 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1394 { |
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1395 boost::mutex::scoped_lock lock(mutex_); |
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1396 maximumPatients_ = count; |
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1397 |
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1398 if (count == 0) |
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1399 { |
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1400 LOG(WARNING) << "No limit on the number of stored patients"; |
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1401 } |
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1402 else |
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1403 { |
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1404 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1405 } |
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1406 |
269
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1407 StandaloneRecycling(); |
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1408 } |
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1409 |
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1410 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1411 { |
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1412 boost::mutex::scoped_lock lock(mutex_); |
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1413 maximumStorageSize_ = size; |
270
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1414 |
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1415 if (size == 0) |
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1416 { |
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1417 LOG(WARNING) << "No limit on the size of the storage area"; |
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1418 } |
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1419 else |
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1420 { |
440
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|
1421 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1422 } |
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1423 |
269
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1424 StandaloneRecycling(); |
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1425 } |
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1426 |
272
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1427 void ServerIndex::StandaloneRecycling() |
269
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1428 { |
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1429 // WARNING: No mutex here, do not include this as a public method |
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1430 Transaction t(*this); |
269
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1431 Recycle(0, ""); |
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1432 t.Commit(0); |
269
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1433 } |
272
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1434 |
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1435 |
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1436 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1437 { |
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1438 boost::mutex::scoped_lock lock(mutex_); |
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1439 |
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1440 // Lookup for the requested resource |
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1441 int64_t id; |
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1442 ResourceType type; |
1294 | 1443 if (!db_.LookupResource(id, type, publicId) || |
272
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1444 type != ResourceType_Patient) |
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1445 { |
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1446 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1447 } |
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1448 |
1247 | 1449 return db_.IsProtectedPatient(id); |
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1450 } |
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1451 |
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1452 |
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1453 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1454 bool isProtected) |
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1455 { |
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1456 boost::mutex::scoped_lock lock(mutex_); |
1310
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1457 Transaction transaction(*this); |
272
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1458 |
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1459 // Lookup for the requested resource |
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1460 int64_t id; |
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1461 ResourceType type; |
1294 | 1462 if (!db_.LookupResource(id, type, publicId) || |
272
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1463 type != ResourceType_Patient) |
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1464 { |
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1465 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1466 } |
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1467 |
1247 | 1468 db_.SetProtectedPatient(id, isProtected); |
1310
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1469 transaction.Commit(0); |
272
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1470 |
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1471 if (isProtected) |
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1472 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1473 else |
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1474 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1475 } |
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1476 |
304 | 1477 |
714
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1478 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1479 const std::string& publicId) |
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1480 { |
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1481 result.clear(); |
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1482 |
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1483 boost::mutex::scoped_lock lock(mutex_); |
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1484 |
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1485 ResourceType type; |
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|
1486 int64_t resource; |
1294 | 1487 if (!db_.LookupResource(resource, type, publicId)) |
714
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1488 { |
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1489 throw OrthancException(ErrorCode_UnknownResource); |
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1490 } |
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1491 |
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1492 if (type == ResourceType_Instance) |
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1493 { |
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1494 // An instance cannot have a child |
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1495 throw OrthancException(ErrorCode_BadParameterType); |
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1496 } |
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|
1497 |
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|
1498 std::list<int64_t> tmp; |
1247 | 1499 db_.GetChildrenInternalId(tmp, resource); |
714
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1500 |
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|
1501 for (std::list<int64_t>::const_iterator |
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1502 it = tmp.begin(); it != tmp.end(); ++it) |
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1503 { |
1247 | 1504 result.push_back(db_.GetPublicId(*it)); |
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1505 } |
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1506 } |
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1507 |
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1508 |
304 | 1509 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1510 const std::string& publicId) | |
1511 { | |
1512 result.clear(); | |
1513 | |
1514 boost::mutex::scoped_lock lock(mutex_); | |
1515 | |
1516 ResourceType type; | |
1517 int64_t top; | |
1294 | 1518 if (!db_.LookupResource(top, type, publicId)) |
304 | 1519 { |
1520 throw OrthancException(ErrorCode_UnknownResource); | |
1521 } | |
1522 | |
1523 if (type == ResourceType_Instance) | |
1524 { | |
1525 // The resource is already an instance: Do not go down the hierarchy | |
1526 result.push_back(publicId); | |
1527 return; | |
1528 } | |
1529 | |
1530 std::stack<int64_t> toExplore; | |
1531 toExplore.push(top); | |
1532 | |
1533 std::list<int64_t> tmp; | |
1534 | |
1535 while (!toExplore.empty()) | |
1536 { | |
1537 // Get the internal ID of the current resource | |
1538 int64_t resource = toExplore.top(); | |
1539 toExplore.pop(); | |
1540 | |
1247 | 1541 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1542 { |
1247 | 1543 result.push_back(db_.GetPublicId(resource)); |
304 | 1544 } |
1545 else | |
1546 { | |
1547 // Tag all the children of this resource as to be explored | |
1247 | 1548 db_.GetChildrenInternalId(tmp, resource); |
304 | 1549 for (std::list<int64_t>::const_iterator |
656 | 1550 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1551 { |
1552 toExplore.push(*it); | |
1553 } | |
1554 } | |
1555 } | |
1556 } | |
1557 | |
306
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1558 |
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1559 void ServerIndex::SetMetadata(const std::string& publicId, |
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1560 MetadataType type, |
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1561 const std::string& value) |
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1562 { |
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1563 boost::mutex::scoped_lock lock(mutex_); |
1773
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1564 Transaction t(*this); |
306
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1565 |
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1566 ResourceType rtype; |
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1567 int64_t id; |
1294 | 1568 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1569 { |
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1570 throw OrthancException(ErrorCode_UnknownResource); |
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1571 } |
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1572 |
1247 | 1573 db_.SetMetadata(id, type, value); |
1773
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1574 |
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|
1575 if (IsUserMetadata(type)) |
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1576 { |
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|
1577 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1578 } |
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|
1579 |
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|
1580 t.Commit(0); |
306
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1581 } |
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1582 |
438 | 1583 |
1584 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1585 MetadataType type) | |
1586 { | |
1587 boost::mutex::scoped_lock lock(mutex_); | |
1773
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|
1588 Transaction t(*this); |
438 | 1589 |
1590 ResourceType rtype; | |
1591 int64_t id; | |
1294 | 1592 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1593 { |
1594 throw OrthancException(ErrorCode_UnknownResource); | |
1595 } | |
1596 | |
1247 | 1597 db_.DeleteMetadata(id, type); |
1773
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1598 |
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|
1599 if (IsUserMetadata(type)) |
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1600 { |
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|
1601 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1602 } |
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1603 |
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|
1604 t.Commit(0); |
438 | 1605 } |
1606 | |
1607 | |
306
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1608 bool ServerIndex::LookupMetadata(std::string& target, |
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1609 const std::string& publicId, |
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1610 MetadataType type) |
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1611 { |
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1612 boost::mutex::scoped_lock lock(mutex_); |
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1613 |
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1614 ResourceType rtype; |
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1615 int64_t id; |
1294 | 1616 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1617 { |
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1618 throw OrthancException(ErrorCode_UnknownResource); |
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1619 } |
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1620 |
1247 | 1621 return db_.LookupMetadata(target, id, type); |
306
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1622 } |
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1623 |
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1624 |
739 | 1625 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1626 const std::string& publicId) |
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1627 { |
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1628 boost::mutex::scoped_lock lock(mutex_); |
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1629 |
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1630 ResourceType rtype; |
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1631 int64_t id; |
1294 | 1632 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1633 { |
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|
1634 throw OrthancException(ErrorCode_UnknownResource); |
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1635 } |
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1636 |
1247 | 1637 db_.ListAvailableMetadata(target, id); |
436
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1638 } |
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1639 |
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1640 |
697
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1641 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1642 const std::string& publicId, |
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|
1643 ResourceType expectedType) |
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|
1644 { |
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|
1645 boost::mutex::scoped_lock lock(mutex_); |
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1646 |
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|
1647 ResourceType type; |
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|
1648 int64_t id; |
1294 | 1649 if (!db_.LookupResource(id, type, publicId) || |
697
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1650 expectedType != type) |
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|
1651 { |
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|
1652 throw OrthancException(ErrorCode_UnknownResource); |
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1653 } |
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1654 |
1247 | 1655 db_.ListAvailableAttachments(target, id); |
697
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|
1656 } |
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|
1657 |
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|
1658 |
306
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|
1659 bool ServerIndex::LookupParent(std::string& target, |
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|
1660 const std::string& publicId) |
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|
1661 { |
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|
1662 boost::mutex::scoped_lock lock(mutex_); |
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|
1663 |
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1664 ResourceType type; |
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1665 int64_t id; |
1294 | 1666 if (!db_.LookupResource(id, type, publicId)) |
306
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|
1667 { |
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1668 throw OrthancException(ErrorCode_UnknownResource); |
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|
1669 } |
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|
1670 |
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|
1671 int64_t parentId; |
1247 | 1672 if (db_.LookupParent(parentId, id)) |
306
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|
1673 { |
1247 | 1674 target = db_.GetPublicId(parentId); |
306
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|
1675 return true; |
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|
1676 } |
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|
1677 else |
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|
1678 { |
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|
1679 return false; |
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|
1680 } |
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|
1681 } |
310 | 1682 |
1683 | |
1684 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1685 { | |
1686 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1687 Transaction transaction(*this); |
311 | 1688 |
1237 | 1689 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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|
1690 transaction.Commit(0); |
311 | 1691 |
1692 return seq; | |
310 | 1693 } |
315 | 1694 |
1695 | |
1696 | |
1697 void ServerIndex::LogChange(ChangeType changeType, | |
1698 const std::string& publicId) | |
1699 { | |
1700 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1701 Transaction transaction(*this); |
315 | 1702 |
1703 int64_t id; | |
1704 ResourceType type; | |
1294 | 1705 if (!db_.LookupResource(id, type, publicId)) |
315 | 1706 { |
1707 throw OrthancException(ErrorCode_UnknownResource); | |
1708 } | |
1709 | |
1237 | 1710 LogChange(id, changeType, type, publicId); |
1310
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|
1711 transaction.Commit(0); |
315 | 1712 } |
413
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|
1713 |
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diff
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|
1714 |
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|
1715 void ServerIndex::DeleteChanges() |
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|
1716 { |
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|
1717 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1718 db_.ClearChanges(); |
413
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|
1719 } |
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|
1720 |
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|
1721 void ServerIndex::DeleteExportedResources() |
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|
1722 { |
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|
1723 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1724 db_.ClearExportedResources(); |
413
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|
1725 } |
440
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1726 |
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1727 |
646 | 1728 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1729 /* out */ uint64_t& uncompressedSize, | |
1730 /* out */ unsigned int& countStudies, | |
1731 /* out */ unsigned int& countSeries, | |
1732 /* out */ unsigned int& countInstances, | |
1733 /* in */ int64_t id, | |
1734 /* in */ ResourceType type) | |
440
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|
1735 { |
646 | 1736 std::stack<int64_t> toExplore; |
1737 toExplore.push(id); | |
440
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1738 |
646 | 1739 countInstances = 0; |
1740 countSeries = 0; | |
1741 countStudies = 0; | |
1742 compressedSize = 0; | |
1743 uncompressedSize = 0; | |
440
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1744 |
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|
1745 while (!toExplore.empty()) |
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1746 { |
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1747 // Get the internal ID of the current resource |
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1748 int64_t resource = toExplore.top(); |
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1749 toExplore.pop(); |
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1750 |
1247 | 1751 ResourceType thisType = db_.GetResourceType(resource); |
440
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|
1752 |
702
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|
1753 std::list<FileContentType> f; |
1247 | 1754 db_.ListAvailableAttachments(f, resource); |
702
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|
1755 |
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|
1756 for (std::list<FileContentType>::const_iterator |
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|
1757 it = f.begin(); it != f.end(); ++it) |
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|
1758 { |
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|
1759 FileInfo attachment; |
1247 | 1760 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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|
1761 { |
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1762 compressedSize += attachment.GetCompressedSize(); |
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1763 uncompressedSize += attachment.GetUncompressedSize(); |
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|
1764 } |
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|
1765 } |
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|
1766 |
440
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1767 if (thisType == ResourceType_Instance) |
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1768 { |
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1769 countInstances++; |
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1770 } |
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1771 else |
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1772 { |
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|
1773 switch (thisType) |
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1774 { |
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|
1775 case ResourceType_Study: |
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1776 countStudies++; |
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1777 break; |
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1778 |
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|
1779 case ResourceType_Series: |
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1780 countSeries++; |
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1781 break; |
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1782 |
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1783 default: |
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1784 break; |
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1785 } |
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1786 |
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1787 // Tag all the children of this resource as to be explored |
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1788 std::list<int64_t> tmp; |
1247 | 1789 db_.GetChildrenInternalId(tmp, resource); |
440
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|
1790 for (std::list<int64_t>::const_iterator |
656 | 1791 it = tmp.begin(); it != tmp.end(); ++it) |
440
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|
1792 { |
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|
1793 toExplore.push(*it); |
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1794 } |
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|
1795 } |
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1796 } |
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|
1797 |
646 | 1798 if (countStudies == 0) |
1799 { | |
1800 countStudies = 1; | |
1801 } | |
1802 | |
1803 if (countSeries == 0) | |
1804 { | |
1805 countSeries = 1; | |
1806 } | |
1807 } | |
1808 | |
1809 | |
1810 | |
1811 void ServerIndex::GetStatistics(Json::Value& target, | |
1812 const std::string& publicId) | |
1813 { | |
1814 boost::mutex::scoped_lock lock(mutex_); | |
1815 | |
1816 ResourceType type; | |
1817 int64_t top; | |
1294 | 1818 if (!db_.LookupResource(top, type, publicId)) |
646 | 1819 { |
1820 throw OrthancException(ErrorCode_UnknownResource); | |
1821 } | |
1822 | |
1823 uint64_t uncompressedSize; | |
1824 uint64_t compressedSize; | |
1825 unsigned int countStudies; | |
1826 unsigned int countSeries; | |
1827 unsigned int countInstances; | |
1828 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1829 countSeries, countInstances, top, type); | |
1830 | |
440
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1831 target = Json::objectValue; |
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1832 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
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1833 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
440
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|
1834 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1835 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1836 |
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1837 switch (type) |
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1838 { |
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1839 // Do NOT add "break" below this point! |
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1840 case ResourceType_Patient: |
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1841 target["CountStudies"] = countStudies; |
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1842 |
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1843 case ResourceType_Study: |
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1844 target["CountSeries"] = countSeries; |
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1845 |
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1846 case ResourceType_Series: |
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1847 target["CountInstances"] = countInstances; |
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1848 |
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1849 case ResourceType_Instance: |
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1850 default: |
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1851 break; |
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1852 } |
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1853 } |
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1854 |
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1855 |
646 | 1856 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1857 /* out */ uint64_t& uncompressedSize, | |
1858 /* out */ unsigned int& countStudies, | |
1859 /* out */ unsigned int& countSeries, | |
1860 /* out */ unsigned int& countInstances, | |
1861 const std::string& publicId) | |
1862 { | |
1863 boost::mutex::scoped_lock lock(mutex_); | |
1864 | |
1865 ResourceType type; | |
1866 int64_t top; | |
1294 | 1867 if (!db_.LookupResource(top, type, publicId)) |
646 | 1868 { |
1869 throw OrthancException(ErrorCode_UnknownResource); | |
1870 } | |
1871 | |
1872 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1873 countSeries, countInstances, top, type); | |
1874 } | |
1875 | |
1876 | |
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1877 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
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1878 { |
2069
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1879 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60); |
511
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1880 if (stableAge <= 0) |
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1881 { |
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1882 stableAge = 60; |
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1883 } |
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1884 |
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1885 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1886 |
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1887 while (!that->done_) |
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1888 { |
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1889 // Check for stable resources each second |
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1890 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1891 |
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1892 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1893 |
511
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1894 while (!that->unstableResources_.IsEmpty() && |
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1895 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1896 { |
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1897 // This DICOM resource has not received any new instance for |
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1898 // some time. It can be considered as stable. |
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1899 |
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1900 UnstableResourcePayload payload; |
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1901 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1902 |
513 | 1903 // Ensure that the resource is still existing before logging the change |
1247 | 1904 if (that->db_.IsExistingResource(id)) |
511
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1905 { |
1177
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1906 switch (payload.GetResourceType()) |
513 | 1907 { |
1177
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1908 case ResourceType_Patient: |
1237 | 1909 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1910 break; |
511
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1911 |
1177
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1912 case ResourceType_Study: |
1237 | 1913 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1914 break; |
511
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1915 |
1177
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1916 case ResourceType_Series: |
1237 | 1917 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1918 break; |
1919 | |
1920 default: | |
1921 throw OrthancException(ErrorCode_InternalError); | |
1922 } | |
1923 | |
1924 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1925 } |
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1926 } |
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1927 } |
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1928 |
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1929 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1930 } |
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1931 |
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1932 |
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1933 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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1934 Orthanc::ResourceType type, |
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1935 const std::string& publicId) |
511
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1936 { |
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1937 // WARNING: Before calling this method, "mutex_" must be locked. |
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1938 |
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1939 assert(type == Orthanc::ResourceType_Patient || |
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1940 type == Orthanc::ResourceType_Study || |
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1941 type == Orthanc::ResourceType_Series); |
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1942 |
1177
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1943 UnstableResourcePayload payload(type, publicId); |
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1944 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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1945 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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1946 |
1237 | 1947 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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1948 } |
521 | 1949 |
1950 | |
1951 | |
1728
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1952 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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1953 ResourceType level, |
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1954 const DicomTag& tag, |
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1955 const std::string& value) |
615 | 1956 { |
1727 | 1957 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
1958 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
1959 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
1960 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
1961 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 1962 |
615 | 1963 result.clear(); |
1964 | |
1965 boost::mutex::scoped_lock lock(mutex_); | |
1966 | |
1746 | 1967 LookupIdentifierQuery query(level); |
1968 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
1969 query.Apply(result, db_); | |
615 | 1970 } |
1971 | |
1972 | |
699
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1973 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1974 const std::string& publicId) |
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1975 { |
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1976 boost::mutex::scoped_lock lock(mutex_); |
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1977 |
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1978 Transaction t(*this); |
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1979 |
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1980 ResourceType resourceType; |
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1981 int64_t resourceId; |
1294 | 1982 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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1983 { |
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1984 return StoreStatus_Failure; // Inexistent resource |
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1985 } |
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1986 |
704
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1987 // Remove possible previous attachment |
1247 | 1988 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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1989 |
704
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1990 // Locate the patient of the target resource |
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1991 int64_t patientId = resourceId; |
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1992 for (;;) |
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1993 { |
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1994 int64_t parent; |
1247 | 1995 if (db_.LookupParent(parent, patientId)) |
704
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1996 { |
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1997 // We have not reached the patient level yet |
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1998 patientId = parent; |
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|
1999 } |
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2000 else |
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2001 { |
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|
2002 // We have reached the patient level |
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|
2003 break; |
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|
2004 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2005 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2006 |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2007 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2008 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2009 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2010 |
1247 | 2011 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2012 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2013 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2014 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2015 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2016 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2017 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2018 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2019 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2020 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2021 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2022 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2023 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2024 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2025 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2026 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2027 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2028 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2029 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2030 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2031 int64_t id; |
1294 | 2032 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2033 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2034 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2035 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2036 |
1247 | 2037 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2038 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2039 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2040 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2041 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2042 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2043 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2044 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2045 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2046 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2047 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2048 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2049 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2050 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2051 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2052 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2053 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2054 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2055 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2056 int64_t id; |
1294 | 2057 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2058 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2059 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2060 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2061 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2062 std::list<MetadataType> metadata; |
1247 | 2063 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2064 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2065 for (std::list<MetadataType>::const_iterator |
1304 | 2066 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2067 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2068 std::string key = EnumerationToString(*it); |
1238 | 2069 |
2070 std::string value; | |
1247 | 2071 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2072 { |
2073 value.clear(); | |
2074 } | |
2075 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2076 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2077 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2078 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2079 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2080 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2081 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2082 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2083 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2084 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2085 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2086 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2087 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2088 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2089 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2090 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2091 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2092 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2093 { |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2094 boost::mutex::scoped_lock lock(mutex_); |
1239 | 2095 |
2096 std::string value; | |
1247 | 2097 if (db_.LookupGlobalProperty(value, property)) |
1239 | 2098 { |
2099 return value; | |
2100 } | |
2101 else | |
2102 { | |
2103 return defaultValue; | |
2104 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2105 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2106 |
1352 | 2107 |
2108 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2109 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2110 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2111 ResourceType levelOfInterest) |
1352 | 2112 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2113 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2114 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2115 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2116 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2117 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2118 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2119 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2120 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2121 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2122 |
1352 | 2123 result.Clear(); |
2124 | |
2125 boost::mutex::scoped_lock lock(mutex_); | |
2126 | |
2127 // Lookup for the requested resource | |
2128 int64_t id; | |
2129 ResourceType type; | |
2130 if (!db_.LookupResource(id, type, publicId) || | |
2131 type != expectedType) | |
2132 { | |
2133 return false; | |
2134 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2135 |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
1676
diff
changeset
|
2136 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2137 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2138 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
1676
diff
changeset
|
2139 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2140 |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2141 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
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diff
changeset
|
2142 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2143 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2144 tmp.ExtractPatientInformation(result); |
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diff
changeset
|
2145 return true; |
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adaptation of search with patient tags at study level
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diff
changeset
|
2146 |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2147 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2148 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
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diff
changeset
|
2149 return true; |
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adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2150 |
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adaptation of search with patient tags at study level
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diff
changeset
|
2151 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2152 throw OrthancException(ErrorCode_InternalError); |
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parents:
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diff
changeset
|
2153 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2154 } |
1352 | 2155 else |
2156 { | |
2157 db_.GetMainDicomTags(result, id); | |
2158 return true; | |
2159 } | |
2160 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2161 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2162 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2163 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2164 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2165 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2166 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2167 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2168 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2169 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2170 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
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|
2171 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2172 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
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|
2173 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
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|
2174 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2175 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2176 return db_.GetDatabaseVersion(); |
de1413733c97
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
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|
2177 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
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|
2178 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2179 |
1753 | 2180 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2181 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1754
diff
changeset
|
2182 const ::Orthanc::LookupResource& lookup) |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
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|
2183 { |
1753 | 2184 boost::mutex::scoped_lock lock(mutex_); |
2185 | |
2186 std::list<int64_t> tmp; | |
2187 lookup.FindCandidates(tmp, db_); | |
2188 | |
2189 resources.resize(tmp.size()); | |
2190 instances.resize(tmp.size()); | |
2191 | |
2192 size_t pos = 0; | |
2193 for (std::list<int64_t>::const_iterator | |
2194 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2195 { | |
1754 | 2196 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2197 | |
1753 | 2198 int64_t instance; |
2120 | 2199 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2200 { |
2201 throw OrthancException(ErrorCode_InternalError); | |
2202 } | |
2203 | |
2204 resources[pos] = db_.GetPublicId(*it); | |
2205 instances[pos] = db_.GetPublicId(instance); | |
2206 } | |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2207 } |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2208 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2209 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2210 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2211 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2212 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2213 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2214 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2215 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2216 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2217 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2218 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2219 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2220 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2221 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2222 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2223 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2224 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2225 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2226 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2227 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2228 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2229 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2230 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2231 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2232 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2233 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2234 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2235 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2236 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2237 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2238 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2239 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2240 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2241 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2242 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2243 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2244 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2245 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2246 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2247 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2248 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2249 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2250 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2251 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2252 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2253 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2254 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2255 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2256 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2257 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2258 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2259 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2260 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2261 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2262 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2263 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2264 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2265 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2266 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2267 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2268 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2269 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2270 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2271 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2272 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2273 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2274 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2275 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2276 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2277 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2278 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2279 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2280 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2281 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2282 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2283 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2284 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2285 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2286 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2287 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2288 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
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changeset
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2289 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
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2290 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
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2291 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2292 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
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2293 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
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2294 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2295 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
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2296 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2297 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
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2298 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2299 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
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2300 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2301 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2302 } |
0 | 2303 } |