Mercurial > hg > orthanc

annotate OrthancServer/Sources/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 5087:df4a90a65af9

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DicomModification::SetAllowManualIdentifiers() has been removed since it was always true -> code cleanup
author Alain Mazy <am@osimis.io>
date Mon, 26 Sep 2022 18:56:40 +0200
parents 6eff25f70121
children 8638522eeda1
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "../PrecompiledHeadersServer.h"
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24 #include "OrthancRestApi.h"
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25
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26 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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27 #include "../../../OrthancFramework/Sources/Logging.h"
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28 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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29 #include "../OrthancConfiguration.h"
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30 #include "../ServerContext.h"
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31 #include "../ServerJobs/MergeStudyJob.h"
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32 #include "../ServerJobs/ResourceModificationJob.h"
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33 #include "../ServerJobs/SplitStudyJob.h"
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34
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35 #include <boost/lexical_cast.hpp>
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36 #include <boost/algorithm/string/predicate.hpp>
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37
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38 #define INFO_SUBSEQUENCES \
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39 "Starting with Orthanc 1.9.4, paths to subsequences can be provided using the "\
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40 "same syntax as the `dcmodify` command-line tool (wildcards are supported as well)."
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43 static const char* const CONTENT = "Content";
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44 static const char* const FORCE = "Force";
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45 static const char* const INSTANCES = "Instances";
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46 static const char* const INTERPRET_BINARY_TAGS = "InterpretBinaryTags";
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47 static const char* const KEEP = "Keep";
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48 static const char* const KEEP_PRIVATE_TAGS = "KeepPrivateTags";
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49 static const char* const KEEP_SOURCE = "KeepSource";
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50 static const char* const LEVEL = "Level";
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51 static const char* const PARENT = "Parent";
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52 static const char* const PRIVATE_CREATOR = "PrivateCreator";
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53 static const char* const REMOVE = "Remove";
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54 static const char* const REPLACE = "Replace";
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55 static const char* const RESOURCES = "Resources";
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56 static const char* const SERIES = "Series";
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57 static const char* const TAGS = "Tags";
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58 static const char* const TRANSCODE = "Transcode";
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60
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61 namespace Orthanc
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62 {
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63 // Modification of DICOM instances ------------------------------------------
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64
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65
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66 static std::string GeneratePatientName(ServerContext& context)
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67 {
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68 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true /* shared */);
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69 return "Anonymized" + boost::lexical_cast<std::string>(seq);
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70 }
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71
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72
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73 static void DocumentKeepSource(RestApiPostCall& call)
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74 {
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75 call.GetDocumentation()
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76 .SetRequestField(KEEP_SOURCE, RestApiCallDocumentation::Type_Boolean,
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77 "If set to `false`, instructs Orthanc to the remove original resources. "
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78 "By default, the original resources are kept in Orthanc.", false);
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79 }
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81
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82 static void DocumentModifyOptions(RestApiPostCall& call)
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83 {
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84 // Check out "DicomModification::ParseModifyRequest()"
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85 call.GetDocumentation()
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86 .SetRequestField(TRANSCODE, RestApiCallDocumentation::Type_String,
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87 "Transcode the DICOM instances to the provided DICOM transfer syntax: "
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88 "https://book.orthanc-server.com/faq/transcoding.html", false)
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89 .SetRequestField(FORCE, RestApiCallDocumentation::Type_Boolean,
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90 "Allow the modification of tags related to DICOM identifiers, at the risk of "
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91 "breaking the DICOM model of the real world", false)
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92 .SetRequestField("RemovePrivateTags", RestApiCallDocumentation::Type_Boolean,
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93 "Remove the private tags from the DICOM instances (defaults to `false`)", false)
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94 .SetRequestField(REPLACE, RestApiCallDocumentation::Type_JsonObject,
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95 "Associative array to change the value of some DICOM tags in the DICOM instances. " INFO_SUBSEQUENCES, false)
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96 .SetRequestField(REMOVE, RestApiCallDocumentation::Type_JsonListOfStrings,
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97 "List of tags that must be removed from the DICOM instances. " INFO_SUBSEQUENCES, false)
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98 .SetRequestField(KEEP, RestApiCallDocumentation::Type_JsonListOfStrings,
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99 "Keep the original value of the specified tags, to be chosen among the `StudyInstanceUID`, "
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100 "`SeriesInstanceUID` and `SOPInstanceUID` tags. Avoid this feature as much as possible, "
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101 "as this breaks the DICOM model of the real world.", false)
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102 .SetRequestField(PRIVATE_CREATOR, RestApiCallDocumentation::Type_String,
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103 "The private creator to be used for private tags in `Replace`", false);
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104
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105 // This was existing, but undocumented in Orthanc <= 1.9.6
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106 DocumentKeepSource(call);
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107 }
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108
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109
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110 static void DocumentAnonymizationOptions(RestApiPostCall& call)
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111 {
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112 // Check out "DicomModification::ParseAnonymizationRequest()"
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113 call.GetDocumentation()
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114 .SetRequestField(FORCE, RestApiCallDocumentation::Type_Boolean,
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115 "Allow the modification of tags related to DICOM identifiers, at the risk of "
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116 "breaking the DICOM model of the real world", false)
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117 .SetRequestField("DicomVersion", RestApiCallDocumentation::Type_String,
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118 "Version of the DICOM standard to be used for anonymization. Check out "
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119 "configuration option `DeidentifyLogsDicomVersion` for possible values.", false)
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120 .SetRequestField(KEEP_PRIVATE_TAGS, RestApiCallDocumentation::Type_Boolean,
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121 "Keep the private tags from the DICOM instances (defaults to `false`)", false)
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122 .SetRequestField(REPLACE, RestApiCallDocumentation::Type_JsonObject,
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123 "Associative array to change the value of some DICOM tags in the DICOM instances. " INFO_SUBSEQUENCES, false)
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124 .SetRequestField(REMOVE, RestApiCallDocumentation::Type_JsonListOfStrings,
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125 "List of additional tags to be removed from the DICOM instances. " INFO_SUBSEQUENCES, false)
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126 .SetRequestField(KEEP, RestApiCallDocumentation::Type_JsonListOfStrings,
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127 "List of DICOM tags whose value must not be destroyed by the anonymization. " INFO_SUBSEQUENCES, false)
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128 .SetRequestField(PRIVATE_CREATOR, RestApiCallDocumentation::Type_String,
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129 "The private creator to be used for private tags in `Replace`", false);
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130
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131 // This was existing, but undocumented in Orthanc <= 1.9.6
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132 DocumentKeepSource(call);
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133 }
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134
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135
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136 static void ParseModifyRequest(Json::Value& request,
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137 DicomModification& target,
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138 const RestApiPostCall& call)
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139 {
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140 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"},"Priority":9}'
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141
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142 {
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143 OrthancConfiguration::ReaderLock lock;
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144 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator());
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145 }
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146
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147 if (call.ParseJsonRequest(request))
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148 {
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149 target.ParseModifyRequest(request);
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150 }
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151 else
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152 {
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153 throw OrthancException(ErrorCode_BadFileFormat);
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154 }
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155 }
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156
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157
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158 static void ParseAnonymizationRequest(Json::Value& request,
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159 DicomModification& target,
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160 RestApiPostCall& call)
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161 {
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162 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm
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163
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164 {
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165 OrthancConfiguration::ReaderLock lock;
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166 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator());
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167 }
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168
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169 if (call.ParseJsonRequest(request) &&
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170 request.isObject())
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171 {
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172 bool patientNameOverridden;
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173 target.ParseAnonymizationRequest(patientNameOverridden, request);
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174
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175 if (!patientNameOverridden)
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176 {
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177 // Override the random Patient's Name by one that is more
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178 // user-friendly (provided none was specified by the user)
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179 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true);
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180 }
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181 }
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182 else
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183 {
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184 throw OrthancException(ErrorCode_BadFileFormat);
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185 }
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186 }
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187
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188
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189 static void AnonymizeOrModifyInstance(DicomModification& modification,
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190 RestApiPostCall& call,
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191 bool transcode,
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192 DicomTransferSyntax targetSyntax)
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193 {
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194 ServerContext& context = OrthancRestApi::GetContext(call);
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195 std::string id = call.GetUriComponent("id", "");
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196
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197 std::unique_ptr<ParsedDicomFile> modified;
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198
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199 {
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200 ServerContext::DicomCacheLocker locker(context, id);
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201 modified.reset(locker.GetDicom().Clone(true));
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202 }
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203
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204 modification.Apply(*modified);
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205
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206 if (transcode)
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207 {
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208 IDicomTranscoder::DicomImage source;
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209 source.AcquireParsed(*modified); // "modified" is invalid below this point
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210
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211 IDicomTranscoder::DicomImage transcoded;
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212
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213 std::set<DicomTransferSyntax> s;
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214 s.insert(targetSyntax);
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215
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216 if (context.Transcode(transcoded, source, s, true))
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217 {
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218 call.GetOutput().AnswerBuffer(transcoded.GetBufferData(),
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219 transcoded.GetBufferSize(), MimeType_Dicom);
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220 }
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221 else
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222 {
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223 throw OrthancException(ErrorCode_InternalError,
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224 "Cannot transcode to transfer syntax: " +
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225 std::string(GetTransferSyntaxUid(targetSyntax)));
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226 }
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227 }
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228 else
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229 {
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230 modified->Answer(call.GetOutput());
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231 }
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232 }
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233
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234
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235 static ResourceType DetectModifyLevel(const DicomModification& modification)
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236 {
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237 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID))
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238 {
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239 return ResourceType_Patient;
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240 }
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241 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
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242 {
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243 return ResourceType_Study;
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244 }
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245 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
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246 {
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247 return ResourceType_Series;
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248 }
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249 else
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250 {
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251 return ResourceType_Instance;
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252 }
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253 }
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254
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255
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256 static void ModifyInstance(RestApiPostCall& call)
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257 {
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258 if (call.IsDocumentation())
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259 {
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260 DocumentModifyOptions(call);
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261 call.GetDocumentation()
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262 .SetTag("Instances")
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263 .SetSummary("Modify instance")
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264 .SetDescription("Download a modified version of the DICOM instance whose Orthanc identifier is provided in the URL: "
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265 "https://book.orthanc-server.com/users/anonymization.html#modification-of-a-single-instance")
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266 .SetUriArgument("id", "Orthanc identifier of the instance of interest")
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267 .AddAnswerType(MimeType_Dicom, "The modified DICOM instance");
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268 return;
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269 }
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270
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271 DicomModification modification;
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272
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273 Json::Value request;
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274 ParseModifyRequest(request, modification, call);
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275
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276 modification.SetLevel(DetectModifyLevel(modification));
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277
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278 if (request.isMember(TRANSCODE))
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279 {
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280 std::string s = SerializationToolbox::ReadString(request, TRANSCODE);
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281
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282 DicomTransferSyntax syntax;
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283 if (LookupTransferSyntax(syntax, s))
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284 {
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285 AnonymizeOrModifyInstance(modification, call, true, syntax);
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286 }
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287 else
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288 {
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289 throw OrthancException(ErrorCode_ParameterOutOfRange, "Unknown transfer syntax: " + s);
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290 }
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291 }
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292 else
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293 {
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294 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */,
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295 DicomTransferSyntax_LittleEndianImplicit /* unused */);
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296 }
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297 }
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298
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299
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300 static void AnonymizeInstance(RestApiPostCall& call)
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301 {
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302 if (call.IsDocumentation())
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303 {
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304 DocumentAnonymizationOptions(call);
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305 call.GetDocumentation()
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306 .SetTag("Instances")
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307 .SetSummary("Anonymize instance")
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308 .SetDescription("Download an anonymized version of the DICOM instance whose Orthanc identifier is provided in the URL: "
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309 "https://book.orthanc-server.com/users/anonymization.html#anonymization-of-a-single-instance")
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310 .SetUriArgument("id", "Orthanc identifier of the instance of interest")
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311 .AddAnswerType(MimeType_Dicom, "The anonymized DICOM instance");
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312 return;
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313 }
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314
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315 DicomModification modification;
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316
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317 Json::Value request;
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318 ParseAnonymizationRequest(request, modification, call);
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319
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320 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */,
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321 DicomTransferSyntax_LittleEndianImplicit /* unused */);
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322 }
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323
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324
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325 static void SetKeepSource(CleaningInstancesJob& job,
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326 const Json::Value& body)
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327 {
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328 if (body.isMember(KEEP_SOURCE))
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329 {
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330 job.SetKeepSource(SerializationToolbox::ReadBoolean(body, KEEP_SOURCE));
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331 }
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332 }
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333
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334
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335 static void SubmitModificationJob(std::unique_ptr<DicomModification>& modification,
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336 bool isAnonymization,
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337 RestApiPostCall& call,
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338 const Json::Value& body,
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339 ResourceType outputLevel /* unused for multiple resources */,
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340 bool isSingleResource,
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341 const std::set<std::string>& resources)
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342 {
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343 ServerContext& context = OrthancRestApi::GetContext(call);
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344
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345 std::unique_ptr<ResourceModificationJob> job(new ResourceModificationJob(context));
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346
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347 if (isSingleResource) // This notably configures the output format
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348 {
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349 job->SetSingleResourceModification(modification.release(), outputLevel, isAnonymization);
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350 }
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351 else
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352 {
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353 job->SetMultipleResourcesModification(modification.release(), isAnonymization);
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354 }
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355
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356 job->SetOrigin(call);
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357 SetKeepSource(*job, body);
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358
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359 if (body.isMember(TRANSCODE))
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360 {
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361 job->SetTranscode(SerializationToolbox::ReadString(body, TRANSCODE));
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362 }
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363
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364 for (std::set<std::string>::const_iterator
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365 it = resources.begin(); it != resources.end(); ++it)
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366 {
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367 context.AddChildInstances(*job, *it);
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368 }
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369
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370 job->AddTrailingStep();
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371
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372 OrthancRestApi::GetApi(call).SubmitCommandsJob
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373 (call, job.release(), true /* synchronous by default */, body);
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374 }
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375
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376
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377 static void SubmitModificationJob(std::unique_ptr<DicomModification>& modification,
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378 bool isAnonymization,
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379 RestApiPostCall& call,
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380 const Json::Value& body,
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381 ResourceType outputLevel)
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382 {
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383 // This was the only flavor in Orthanc <= 1.9.3
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384 std::set<std::string> resources;
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385 resources.insert(call.GetUriComponent("id", ""));
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386
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387 SubmitModificationJob(modification, isAnonymization, call, body, outputLevel,
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388 true /* single resource */, resources);
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389 }
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390
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391
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392 static void SubmitBulkJob(std::unique_ptr<DicomModification>& modification,
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393 bool isAnonymization,
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394 RestApiPostCall& call,
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395 const Json::Value& body)
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396 {
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397 std::set<std::string> resources;
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398 SerializationToolbox::ReadSetOfStrings(resources, body, RESOURCES);
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399
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400 SubmitModificationJob(modification, isAnonymization,
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401 call, body, ResourceType_Instance /* arbitrary value, unused */,
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402 false /* multiple resources */, resources);
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403 }
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404
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405
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406 template <enum ResourceType resourceType>
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407 static void ModifyResource(RestApiPostCall& call)
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408 {
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409 if (call.IsDocumentation())
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410 {
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411 OrthancRestApi::DocumentSubmitCommandsJob(call);
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412 DocumentModifyOptions(call);
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413 const std::string r = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */);
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414 call.GetDocumentation()
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415 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */))
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416 .SetSummary("Modify " + r)
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417 .SetDescription("Start a job that will modify all the DICOM instances within the " + r +
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418 " whose identifier is provided in the URL. The modified DICOM instances will be "
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419 "stored into a brand new " + r + ", whose Orthanc identifiers will be returned by the job. "
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420 "https://book.orthanc-server.com/users/anonymization.html#modification-of-studies-or-series")
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421 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest");
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422 return;
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423 }
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424
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425 std::unique_ptr<DicomModification> modification(new DicomModification);
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426
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427 Json::Value body;
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428 ParseModifyRequest(body, *modification, call);
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429
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430 modification->SetLevel(resourceType);
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431
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432 SubmitModificationJob(modification, false /* not an anonymization */,
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433 call, body, resourceType);
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434 }
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435
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436
4693
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diff changeset
437 // New in Orthanc 1.9.4
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438 static void BulkModify(RestApiPostCall& call)
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439 {
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440 if (call.IsDocumentation())
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441 {
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442 OrthancRestApi::DocumentSubmitCommandsJob(call);
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443 DocumentModifyOptions(call);
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444 call.GetDocumentation()
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445 .SetTag("System")
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446 .SetSummary("Modify a set of resources")
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447 .SetRequestField(RESOURCES, RestApiCallDocumentation::Type_JsonListOfStrings,
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448 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true)
4766
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449 .SetRequestField(LEVEL, RestApiCallDocumentation::Type_String,
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450 "Level of the modification (`Patient`, `Study`, `Series` or `Instance`). If absent, "
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451 "the level defaults to `Instance`, but is set to `Patient` if `PatientID` is modified, "
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452 "to `Study` if `StudyInstanceUID` is modified, or to `Series` if `SeriesInstancesUID` "
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453 "is modified. (new in Orthanc 1.9.7)", false)
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454 .SetDescription("Start a job that will modify all the DICOM patients, studies, series or instances "
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diff changeset
455 "whose identifiers are provided in the `Resources` field.")
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456 .AddAnswerType(MimeType_Json, "The list of all the resources that have been altered by this modification");
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457 return;
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458 }
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diff changeset
459
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diff changeset
460 std::unique_ptr<DicomModification> modification(new DicomModification);
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461
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462 Json::Value body;
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463 ParseModifyRequest(body, *modification, call);
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464
4766
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465 if (body.isMember(LEVEL))
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466 {
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467 // This case was introduced in Orthanc 1.9.7
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468 modification->SetLevel(StringToResourceType(body[LEVEL].asCString()));
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469 }
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470 else
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471 {
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diff changeset
472 modification->SetLevel(DetectModifyLevel(*modification));
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473 }
4693
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474
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475 SubmitBulkJob(modification, false /* not an anonymization */, call, body);
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476 }
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diff changeset
477
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diff changeset
478
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diff changeset
479 template <enum ResourceType resourceType>
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diff changeset
480 static void AnonymizeResource(RestApiPostCall& call)
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diff changeset
481 {
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482 if (call.IsDocumentation())
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483 {
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diff changeset
484 OrthancRestApi::DocumentSubmitCommandsJob(call);
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485 DocumentAnonymizationOptions(call);
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486 const std::string r = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */);
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487 call.GetDocumentation()
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488 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */))
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489 .SetSummary("Anonymize " + r)
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490 .SetDescription("Start a job that will anonymize all the DICOM instances within the " + r +
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diff changeset
491 " whose identifier is provided in the URL. The modified DICOM instances will be "
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diff changeset
492 "stored into a brand new " + r + ", whose Orthanc identifiers will be returned by the job. "
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parents: 4422
diff changeset
493 "https://book.orthanc-server.com/users/anonymization.html#anonymization-of-patients-studies-or-series")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
494 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest");
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
495 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
496 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
497
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
498 std::unique_ptr<DicomModification> modification(new DicomModification);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
500 Json::Value body;
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
501 ParseAnonymizationRequest(body, *modification, call);
2640
c691fcf66071 ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2639
diff changeset
502
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
503 SubmitModificationJob(modification, true /* anonymization */,
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2867
diff changeset
504 call, body, resourceType);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
508 // New in Orthanc 1.9.4
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
509 static void BulkAnonymize(RestApiPostCall& call)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
510 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
511 if (call.IsDocumentation())
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
512 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
513 OrthancRestApi::DocumentSubmitCommandsJob(call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
514 DocumentAnonymizationOptions(call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
515 call.GetDocumentation()
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
516 .SetTag("System")
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4693
diff changeset
517 .SetSummary("Anonymize a set of resources")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
518 .SetRequestField(RESOURCES, RestApiCallDocumentation::Type_JsonListOfStrings,
4699
facea16b055b added the "Level" argument to "/tools/bulk-content"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
519 "List of the Orthanc identifiers of the patients/studies/series/instances of interest.", true)
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
520 .SetDescription("Start a job that will anonymize all the DICOM patients, studies, series or instances "
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
521 "whose identifiers are provided in the `Resources` field.")
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
522 .AddAnswerType(MimeType_Json, "The list of all the resources that have been created by this anonymization");
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
523 return;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
524 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
525
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
526 std::unique_ptr<DicomModification> modification(new DicomModification);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
527
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
528 Json::Value body;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
529 ParseAnonymizationRequest(body, *modification, call);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
530
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
531 SubmitBulkJob(modification, true /* anonymization */, call, body);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
532 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
533
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
534
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
535 static void StoreCreatedInstance(std::string& id /* out */,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
536 RestApiPostCall& call,
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
537 ParsedDicomFile& dicom,
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
538 bool sendAnswer)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
539 {
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4479
diff changeset
540 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom));
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4479
diff changeset
541 toStore->SetOrigin(DicomInstanceOrigin::FromRest(call));
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
542
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
543 ServerContext& context = OrthancRestApi::GetContext(call);
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4766
diff changeset
544 ServerContext::StoreResult result = context.Store(id, *toStore, StoreInstanceMode_Default);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
545
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4766
diff changeset
546 if (result.GetStatus() == StoreStatus_Failure)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
547 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
548 throw OrthancException(ErrorCode_CannotStoreInstance);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
549 }
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
550
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
551 if (sendAnswer)
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
552 {
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4766
diff changeset
553 OrthancRestApi::GetApi(call).AnswerStoredInstance(call, *toStore, result.GetStatus(), id);
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
554 }
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
555 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
556
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
557
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
558 static void CreateDicomV1(ParsedDicomFile& dicom,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
559 RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
560 const Json::Value& request)
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
561 {
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
562 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}'
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 796
diff changeset
563 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}'
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
564
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
565 assert(request.isObject());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
566 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
567
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
568 Json::Value::Members members = request.getMemberNames();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
569 for (size_t i = 0; i < members.size(); i++)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
570 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
571 const std::string& name = members[i];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
572 if (request[name].type() != Json::stringValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
573 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
574 throw OrthancException(ErrorCode_CreateDicomNotString);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
575 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
576
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
577 std::string value = request[name].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
578
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
579 DicomTag tag = FromDcmtkBridge::ParseTag(name);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
580 if (tag == DICOM_TAG_PIXEL_DATA)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
581 {
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
582 dicom.EmbedContent(value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
583 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
584 else
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
585 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
586 // This is V1, don't try and decode data URI scheme
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
587 dicom.ReplacePlainString(tag, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
588 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
589 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
590 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
591
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
592
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
593 static void InjectTags(ParsedDicomFile& dicom,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
594 const Json::Value& tags,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
595 bool decodeBinaryTags,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
596 const std::string& privateCreator,
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
597 bool force)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
598 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
599 if (tags.type() != Json::objectValue)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
600 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
601 throw OrthancException(ErrorCode_BadRequest, "Tags field is not an array");
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
602 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
603
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
604 // Inject the user-specified tags
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
605 Json::Value::Members members = tags.getMemberNames();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
606 for (size_t i = 0; i < members.size(); i++)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
607 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
608 const std::string& name = members[i];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
609 DicomTag tag = FromDcmtkBridge::ParseTag(name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
610
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
611 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
612 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
613 if (!force &&
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
614 tag != DICOM_TAG_PATIENT_ID &&
1640
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
615 tag != DICOM_TAG_ACQUISITION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
616 tag != DICOM_TAG_ACQUISITION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
617 tag != DICOM_TAG_CONTENT_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
618 tag != DICOM_TAG_CONTENT_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
619 tag != DICOM_TAG_INSTANCE_CREATION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
620 tag != DICOM_TAG_INSTANCE_CREATION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
621 tag != DICOM_TAG_SERIES_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
622 tag != DICOM_TAG_SERIES_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
623 tag != DICOM_TAG_STUDY_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
624 tag != DICOM_TAG_STUDY_TIME &&
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
625 dicom.HasTag(tag))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
626 {
2952
4ceb9bf7b00c added details string in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2936
diff changeset
627 throw OrthancException(ErrorCode_CreateDicomOverrideTag, name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
628 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
629
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
630 if (tag == DICOM_TAG_PIXEL_DATA)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
631 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
632 throw OrthancException(ErrorCode_CreateDicomUseContent);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
633 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
634 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
635 {
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
636 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent, privateCreator);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
637 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
638 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
639 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
640 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
641
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
642
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
643 static void CreateSeries(RestApiPostCall& call,
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
644 ParsedDicomFile& base /* in */,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
645 const Json::Value& content,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
646 bool decodeBinaryTags,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
647 const std::string& privateCreator,
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
648 bool force)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
649 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
650 assert(content.isArray());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
651 assert(content.size() > 0);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
652 ServerContext& context = OrthancRestApi::GetContext(call);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
653
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
654 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
655 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1");
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
656
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
657 std::string someInstance;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
658
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
659 try
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
660 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
661 for (Json::ArrayIndex i = 0; i < content.size(); i++)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
662 {
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
663 std::unique_ptr<ParsedDicomFile> dicom(base.Clone(false));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
664 const Json::Value* payload = NULL;
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
665
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
666 if (content[i].type() == Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
667 {
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
668 payload = &content[i];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
669 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
670 else if (content[i].type() == Json::objectValue)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
671 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
672 if (!content[i].isMember(CONTENT))
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
673 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
674 throw OrthancException(ErrorCode_CreateDicomNoPayload);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
675 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
676
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
677 payload = &content[i][CONTENT];
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
678
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
679 if (content[i].isMember(TAGS))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
680 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
681 InjectTags(*dicom, content[i][TAGS], decodeBinaryTags, privateCreator, force);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
682 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
683 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
684
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
685 if (payload == NULL ||
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
686 payload->type() != Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
687 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
688 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
689 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
690
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
691 dicom->EmbedContent(payload->asString());
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
692 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
693 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
694
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
695 StoreCreatedInstance(someInstance, call, *dicom, false);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
696 }
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
697 }
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
698 catch (OrthancException&)
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
699 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
700 // Error: Remove the newly-created series
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
701
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
702 std::string series;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
703 if (context.GetIndex().LookupParent(series, someInstance))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
704 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
705 Json::Value dummy;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
706 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
707 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
708
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
709 throw;
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
710 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
711
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
712 std::string series;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
713 if (context.GetIndex().LookupParent(series, someInstance))
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
714 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
715 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
716 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
717 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
718
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
719
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
720 static void CreateDicomV2(RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
721 const Json::Value& request)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
722 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
723 static const char* const SPECIFIC_CHARACTER_SET_2 = "SpecificCharacterSet";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
724 static const char* const TYPE = "Type";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
725 static const char* const VALUE = "Value";
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
726
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
727 assert(request.isObject());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
728 ServerContext& context = OrthancRestApi::GetContext(call);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
729
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
730 if (!request.isMember(TAGS) ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
731 request[TAGS].type() != Json::objectValue)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
732 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
733 throw OrthancException(ErrorCode_BadRequest);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
734 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
735
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
736 ParsedDicomFile dicom(true);
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
737
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
738 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
739 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
740
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
741 if (request[TAGS].isMember(SPECIFIC_CHARACTER_SET_2))
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
742 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
743 const char* tmp = request[TAGS][SPECIFIC_CHARACTER_SET_2].asCString();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
744 if (!GetDicomEncoding(encoding, tmp))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
745 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
746 throw OrthancException(ErrorCode_ParameterOutOfRange,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2952
diff changeset
747 "Unknown specific character set: " + std::string(tmp));
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
748 }
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
749 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
750 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
751 {
2381
b8969010b534 uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2361
diff changeset
752 encoding = GetDefaultDicomEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
753 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
754
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
755 dicom.SetEncoding(encoding);
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
756 }
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
757
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
758 ResourceType parentType = ResourceType_Instance;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
759
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
760 if (request.isMember(PARENT))
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
761 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
762 // Locate the parent tags
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
763 std::string parent = request[PARENT].asString();
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
764 if (!context.GetIndex().LookupResourceType(parentType, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
765 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
766 throw OrthancException(ErrorCode_CreateDicomBadParent);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
767 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
768
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
769 if (parentType == ResourceType_Instance)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
770 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
771 throw OrthancException(ErrorCode_CreateDicomParentIsInstance);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
772 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
773
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
774 // Select one existing child instance of the parent resource, to
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
775 // retrieve all its tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
776 Json::Value siblingTags;
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
777 std::string siblingInstanceId;
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
778
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
779 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
780 // Retrieve all the instances of the parent resource
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
781 std::list<std::string> siblingInstances;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
782 context.GetIndex().GetChildInstances(siblingInstances, parent);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
783
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
784 if (siblingInstances.empty())
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
785 {
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
786 // Error: No instance (should never happen)
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
787 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
788 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
789
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
790 siblingInstanceId = siblingInstances.front();
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
791 context.ReadDicomAsJson(siblingTags, siblingInstanceId);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
792 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
793
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
794
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
795 // Choose the same encoding as the parent resource
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
796 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
797 static const char* const SPECIFIC_CHARACTER_SET = "0008,0005";
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
798
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
799 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
800 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
801 Encoding encoding;
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
802
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
803 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember(VALUE) ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
804 siblingTags[SPECIFIC_CHARACTER_SET][VALUE].type() != Json::stringValue ||
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
805 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET][VALUE].asCString()))
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
806 {
3009
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
807 LOG(WARNING) << "Instance with an incorrect Specific Character Set, "
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
808 << "using the default Orthanc encoding: " << siblingInstanceId;
750de70b3603 make "/tools/create-dicom" more tolerant to invalid specific character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2955
diff changeset
809 encoding = GetDefaultDicomEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
810 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
811
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
812 dicom.SetEncoding(encoding);
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
813 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
814 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
815
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
816
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
817 // Retrieve the tags for all the parent modules
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
818 typedef std::set<DicomTag> ModuleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
819 ModuleTags moduleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
820
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
821 ResourceType type = parentType;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
822 for (;;)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
823 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
824 DicomTag::AddTagsForModule(moduleTags, GetModule(type));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
825
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
826 if (type == ResourceType_Patient)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
827 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
828 break; // We're done
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
829 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
830
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
831 // Go up
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
832 std::string tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
833 if (!context.GetIndex().LookupParent(tmp, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
834 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
835 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
836 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
837
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
838 parent = tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
839 type = GetParentResourceType(type);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
840 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
841
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
842 for (ModuleTags::const_iterator it = moduleTags.begin();
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
843 it != moduleTags.end(); ++it)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
844 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
845 std::string t = it->Format();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
846 if (siblingTags.isMember(t))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
847 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
848 const Json::Value& tag = siblingTags[t];
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
849 if (tag[TYPE] == "Null")
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
850 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
851 dicom.ReplacePlainString(*it, "");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
852 }
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
853 else if (tag[TYPE] == "String")
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
854 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
855 std::string value = tag[VALUE].asString(); // This is an UTF-8 value (as it comes from JSON)
3441
6cc72ebfd6ef Fix issue #141 (/tools/create-dicom removes non-ASCII characters from study description)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
856 dicom.ReplacePlainString(*it, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
857 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
858 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
859 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
860 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
861
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
862
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
863 bool decodeBinaryTags = true;
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
864 if (request.isMember(INTERPRET_BINARY_TAGS))
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
865 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
866 const Json::Value& v = request[INTERPRET_BINARY_TAGS];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
867 if (v.type() != Json::booleanValue)
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
868 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
869 throw OrthancException(ErrorCode_BadRequest);
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
870 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
871
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
872 decodeBinaryTags = v.asBool();
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
873 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
874
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
875
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
876 // New argument in Orthanc 1.6.0
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
877 std::string privateCreator;
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
878 if (request.isMember(PRIVATE_CREATOR))
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
879 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
880 const Json::Value& v = request[PRIVATE_CREATOR];
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
881 if (v.type() != Json::stringValue)
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
882 {
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
883 throw OrthancException(ErrorCode_BadRequest);
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
884 }
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
885
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
886 privateCreator = v.asString();
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
887 }
3709
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
888 else
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
889 {
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
890 OrthancConfiguration::ReaderLock lock;
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
891 privateCreator = lock.GetConfiguration().GetDefaultPrivateCreator();
1f4910999fe7 Fix issue #168 (Plugins can't read private tags from the configuration file)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3691
diff changeset
892 }
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
893
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
894
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
895 // New in Orthanc 1.9.0
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
896 bool force = false;
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
897 if (request.isMember(FORCE))
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
898 {
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
899 const Json::Value& v = request[FORCE];
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
900 if (v.type() != Json::booleanValue)
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
901 {
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
902 throw OrthancException(ErrorCode_BadRequest);
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
903 }
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
904
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
905 force = v.asBool();
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
906 }
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
907
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
908
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
909 // Inject time-related information
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
910 std::string date, time;
2475
8cc3ca64a534 Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
911 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
912 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
913 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
914 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
915 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
916 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
917 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
918
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
919 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
920 parentType == ResourceType_Study ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
921 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
922 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
923 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
924 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
925 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
926
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
927 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
928 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
929 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
930 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
931 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
932 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
933
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
934
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
935 InjectTags(dicom, request[TAGS], decodeBinaryTags, privateCreator, force);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
936
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
937
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
938 // Inject the content (either an image, or a PDF file)
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
939 if (request.isMember(CONTENT))
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
940 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
941 const Json::Value& content = request[CONTENT];
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
942
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
943 if (content.type() == Json::stringValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
944 {
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
945 dicom.EmbedContent(request[CONTENT].asString());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
946
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
947 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
948 else if (content.type() == Json::arrayValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
949 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
950 if (content.size() > 0)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
951 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
952 // Let's create a series instead of a single instance
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
953 CreateSeries(call, dicom, content, decodeBinaryTags, privateCreator, force);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
954 return;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
955 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
956 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
957 else
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
958 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
959 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
960 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
961 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
962
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
963 std::string id;
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
964 StoreCreatedInstance(id, call, dicom, true);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
965 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
966
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
967
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
968 static void CreateDicom(RestApiPostCall& call)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
969 {
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
970 if (call.IsDocumentation())
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
971 {
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
972 call.GetDocumentation()
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
973 .SetTag("System")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
974 .SetSummary("Create one DICOM instance")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
975 .SetDescription("Create one DICOM instance, and store it into Orthanc")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
976 .SetRequestField(TAGS, RestApiCallDocumentation::Type_JsonObject,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
977 "Associative array containing the tags of the new instance to be created", true)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
978 .SetRequestField(CONTENT, RestApiCallDocumentation::Type_String,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
979 "This field can be used to embed an image (pixel data) or a PDF inside the created DICOM instance. "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
980 "The PNG image, the JPEG image or the PDF file must be provided using their "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
981 "[data URI scheme encoding](https://en.wikipedia.org/wiki/Data_URI_scheme). "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
982 "This field can possibly contain a JSON array, in which case a DICOM series is created "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
983 "containing one DICOM instance for each item in the `Content` field.", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
984 .SetRequestField(PARENT, RestApiCallDocumentation::Type_String,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
985 "If present, the newly created instance will be attached to the parent DICOM resource "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
986 "whose Orthanc identifier is contained in this field. The DICOM tags of the parent "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
987 "modules in the DICOM hierarchy will be automatically copied to the newly created instance.", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
988 .SetRequestField(INTERPRET_BINARY_TAGS, RestApiCallDocumentation::Type_Boolean,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
989 "If some value in the `Tags` associative array is formatted according to some "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
990 "[data URI scheme encoding](https://en.wikipedia.org/wiki/Data_URI_scheme), "
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
991 "whether this value is decoded to a binary value or kept as such (`true` by default)", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
992 .SetRequestField(PRIVATE_CREATOR, RestApiCallDocumentation::Type_String,
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
993 "The private creator to be used for private tags in `Tags`", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
994 .SetRequestField(FORCE, RestApiCallDocumentation::Type_Boolean,
4479
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
995 "Avoid the consistency checks for the DICOM tags that enforce the DICOM model of the real-world. "
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
996 "You can notably use this flag if you need to manually set the tags `StudyInstanceUID`, "
1619cffd1948 "/tools/create-dicom": New flag "Force" to bypass consistency checks for the DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
997 "`SeriesInstanceUID`, or `SOPInstanceUID`. Be careful with this feature.", false)
4422
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
998 .SetAnswerField("ID", RestApiCallDocumentation::Type_String, "Orthanc identifier of the newly created instance")
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
999 .SetAnswerField("Path", RestApiCallDocumentation::Type_String, "Path to access the instance in the REST API");
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1000 return;
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1001 }
48303e493135 cont openapi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
1002
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1003 Json::Value request;
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1004 if (!call.ParseJsonRequest(request) ||
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1005 !request.isObject())
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1006 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1007 throw OrthancException(ErrorCode_BadRequest);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1008 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1009
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1010 if (request.isMember(TAGS))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1011 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1012 CreateDicomV2(call, request);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1013 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1014 else
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1015 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1016 // Compatibility with Orthanc <= 0.9.3
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
1017 ParsedDicomFile dicom(true);
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
1018 CreateDicomV1(dicom, call, request);
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
1019
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1020 std::string id;
2899
5dd649de253d POST-ing a DICOM file to "/instances" also answers the patient/study/series ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2869
diff changeset
1021 StoreCreatedInstance(id, call, dicom, true);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
1022 }
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1023 }
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1024
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1025
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1026 static void SplitStudy(RestApiPostCall& call)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1027 {
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1028 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1029 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1030 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1031 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1032 .SetTag("Studies")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1033 .SetSummary("Split study")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1034 .SetDescription("Start a new job so as to split the DICOM study whose Orthanc identifier is provided in the URL, "
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1035 "by taking some of its children series or instances out of it and putting them into a brand new study "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1036 "(this new study is created by setting the `StudyInstanceUID` tag to a random identifier): "
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1037 "https://book.orthanc-server.com/users/anonymization.html#splitting")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1038 .SetUriArgument("id", "Orthanc identifier of the study of interest")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1039 .SetRequestField(SERIES, RestApiCallDocumentation::Type_JsonListOfStrings,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1040 "The list of series to be separated from the parent study. "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1041 "These series must all be children of the same source study, that is specified in the URI.", false)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1042 .SetRequestField(REPLACE, RestApiCallDocumentation::Type_JsonObject,
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1043 "Associative array to change the value of some DICOM tags in the new study. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1044 "These tags must be part of the \"Patient Module Attributes\" or the \"General Study "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1045 "Module Attributes\", as specified by the DICOM 2011 standard in Tables C.7-1 and C.7-3.", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1046 .SetRequestField(REMOVE, RestApiCallDocumentation::Type_JsonListOfStrings,
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1047 "List of tags that must be removed in the new study (from the same modules as in the `Replace` option)", false)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1048 .SetRequestField(KEEP_SOURCE, RestApiCallDocumentation::Type_Boolean,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1049 "If set to `true`, instructs Orthanc to keep a copy of the original series/instances in the source study. "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1050 "By default, the original series/instances are deleted from Orthanc.", false)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1051 .SetRequestField(INSTANCES, RestApiCallDocumentation::Type_JsonListOfStrings,
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1052 "The list of instances to be separated from the parent study. "
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1053 "These instances must all be children of the same source study, that is specified in the URI.", false);
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1054 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1055 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1056
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1057 ServerContext& context = OrthancRestApi::GetContext(call);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1058
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1059 Json::Value request;
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1060 if (!call.ParseJsonRequest(request))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1061 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1062 // Bad JSON request
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1063 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1064 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1065
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1066 const std::string study = call.GetUriComponent("id", "");
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1067
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
1068 std::unique_ptr<SplitStudyJob> job(new SplitStudyJob(context, study));
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1069 job->SetOrigin(call);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1070
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1071 bool ok = false;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1072 if (request.isMember(SERIES))
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1073 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1074 std::vector<std::string> series;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1075 SerializationToolbox::ReadArrayOfStrings(series, request, SERIES);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1076
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1077 for (size_t i = 0; i < series.size(); i++)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1078 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1079 job->AddSourceSeries(series[i]);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1080 ok = true;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1081 }
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1082 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1083
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1084 if (request.isMember(INSTANCES))
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1085 {
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1086 std::vector<std::string> instances;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1087 SerializationToolbox::ReadArrayOfStrings(instances, request, INSTANCES);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1088
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1089 for (size_t i = 0; i < instances.size(); i++)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1090 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1091 job->AddSourceInstance(instances[i]);
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1092 ok = true;
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1093 }
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1094 }
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1095
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1096 if (!ok)
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1097 {
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1098 throw OrthancException(ErrorCode_BadRequest, "Both the \"Series\" and the \"Instances\" fields are missing");
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1099 }
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1100
2860
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1101 job->AddTrailingStep();
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1102
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1103 SetKeepSource(*job, request);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1104
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1105 if (request.isMember(REMOVE))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1106 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1107 if (request[REMOVE].type() != Json::arrayValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1108 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1109 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1110 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1111
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1112 for (Json::Value::ArrayIndex i = 0; i < request[REMOVE].size(); i++)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1113 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1114 if (request[REMOVE][i].type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1115 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1116 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1117 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1118 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1119 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1120 job->Remove(FromDcmtkBridge::ParseTag(request[REMOVE][i].asCString()));
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1121 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1122 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1123 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1124
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1125 if (request.isMember(REPLACE))
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1126 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1127 if (request[REPLACE].type() != Json::objectValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1128 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1129 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1130 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1131
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1132 Json::Value::Members tags = request[REPLACE].getMemberNames();
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1133
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1134 for (size_t i = 0; i < tags.size(); i++)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1135 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1136 const Json::Value& value = request[REPLACE][tags[i]];
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1137
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1138 if (value.type() != Json::stringValue)
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1139 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1140 throw OrthancException(ErrorCode_BadFileFormat);
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1141 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1142 else
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1143 {
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1144 job->Replace(FromDcmtkBridge::ParseTag(tags[i]), value.asString());
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1145 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1146 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1147 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1148
2869
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1149 OrthancRestApi::GetApi(call).SubmitCommandsJob
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1150 (call, job.release(), true /* synchronous by default */, request);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1151 }
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1152
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1153
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1154 static void MergeStudy(RestApiPostCall& call)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1155 {
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1156 if (call.IsDocumentation())
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1157 {
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1158 OrthancRestApi::DocumentSubmitCommandsJob(call);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1159 call.GetDocumentation()
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1160 .SetTag("Studies")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1161 .SetSummary("Merge study")
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4712
diff changeset
1162 .SetDescription("Start a new job so as to move some DICOM resources into the DICOM study whose Orthanc identifier "
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1163 "is provided in the URL: https://book.orthanc-server.com/users/anonymization.html#merging")
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1164 .SetUriArgument("id", "Orthanc identifier of the study of interest")
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1165 .SetRequestField(RESOURCES, RestApiCallDocumentation::Type_JsonListOfStrings,
4715
fb98db281d1d "/studies/{id}/merge" accepts instances inside its "Resources" parameter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4712
diff changeset
1166 "The list of DICOM resources (studies, series, and/or instances) to be merged "
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1167 "into the study of interest (mandatory option)", true)
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1168 .SetRequestField(KEEP_SOURCE, RestApiCallDocumentation::Type_Boolean,
4424
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1169 "If set to `true`, instructs Orthanc to keep a copy of the original resources in their source study. "
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1170 "By default, the original resources are deleted from Orthanc.", false);
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1171 return;
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1172 }
83371ccdfe80 openapi documentation is now completed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4422
diff changeset
1173
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1174 ServerContext& context = OrthancRestApi::GetContext(call);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1175
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1176 Json::Value request;
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1177 if (!call.ParseJsonRequest(request))
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1178 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1179 // Bad JSON request
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1180 throw OrthancException(ErrorCode_BadFileFormat);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1181 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1182
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1183 const std::string study = call.GetUriComponent("id", "");
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1184
3712
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3709
diff changeset
1185 std::unique_ptr<MergeStudyJob> job(new MergeStudyJob(context, study));
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1186 job->SetOrigin(call);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1187
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1188 std::vector<std::string> resources;
4712
bad8935cd5f2 "/studies/{id}/split" accepts "Instances" parameter to split instances instead of series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4699
diff changeset
1189 SerializationToolbox::ReadArrayOfStrings(resources, request, RESOURCES);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1190
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1191 for (size_t i = 0; i < resources.size(); i++)
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1192 {
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1193 job->AddSource(resources[i]);
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1194 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1195
2860
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1196 job->AddTrailingStep();
8b00e4cb4a6b SetOfCommandsJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2853
diff changeset
1197
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
1198 SetKeepSource(*job, request);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1199
2869
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1200 OrthancRestApi::GetApi(call).SubmitCommandsJob
2bd87764709c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
1201 (call, job.release(), true /* synchronous by default */, request);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1202 }
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1203
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1204
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1205 void OrthancRestApi::RegisterAnonymizeModify()
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1206 {
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1207 Register("/instances/{id}/modify", ModifyInstance);
2639
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1208 Register("/series/{id}/modify", ModifyResource<ResourceType_Series>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1209 Register("/studies/{id}/modify", ModifyResource<ResourceType_Study>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1210 Register("/patients/{id}/modify", ModifyResource<ResourceType_Patient>);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1211 Register("/tools/bulk-modify", BulkModify);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1212
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1213 Register("/instances/{id}/anonymize", AnonymizeInstance);
2639
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1214 Register("/series/{id}/anonymize", AnonymizeResource<ResourceType_Series>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1215 Register("/studies/{id}/anonymize", AnonymizeResource<ResourceType_Study>);
75a404e40323 simplification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
1216 Register("/patients/{id}/anonymize", AnonymizeResource<ResourceType_Patient>);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4687
diff changeset
1217 Register("/tools/bulk-anonymize", BulkAnonymize);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
1218
1120
009dce4ea2f6 /tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1010
diff changeset
1219 Register("/tools/create-dicom", CreateDicom);
2844
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1220
99863d6245b2 New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
1221 Register("/studies/{id}/split", SplitStudy);
2853
52b017d22a4f New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2844
diff changeset
1222 Register("/studies/{id}/merge", MergeStudy);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1223 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1224 }