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annotate OrthancServer/Plugins/Samples/ModalityWorklists/Plugin.cpp @ 5630:3b7fb32ecbb0 default tip

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fix OrthancPlugin.doxygen
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 17 May 2024 13:23:58 +0200
parents a7c88563c8cc
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2024 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #define MODALITY_WORKLISTS_NAME "worklists"
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24
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25 #include "../../../../OrthancFramework/Sources/Compatibility.h"
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26 #include "../Common/OrthancPluginCppWrapper.h"
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27
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28 #include <boost/filesystem.hpp>
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29 #include <json/value.h>
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30 #include <string.h>
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31 #include <iostream>
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32 #include <algorithm>
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33
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34 static std::string folder_;
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35 static bool filterIssuerAet_ = false;
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36 static unsigned int limitAnswers_ = 0;
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37
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38 /**
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39 * This is the main function for matching a DICOM worklist against a query.
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40 **/
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41 static bool MatchWorklist(OrthancPluginWorklistAnswers* answers,
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42 const OrthancPluginWorklistQuery* query,
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43 const OrthancPlugins::FindMatcher& matcher,
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44 const std::string& path)
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45 {
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46 OrthancPlugins::MemoryBuffer dicom;
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47 dicom.ReadFile(path);
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48
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49 if (matcher.IsMatch(dicom))
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50 {
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51 // This DICOM file matches the worklist query, add it to the answers
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52 OrthancPluginErrorCode code = OrthancPluginWorklistAddAnswer
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53 (OrthancPlugins::GetGlobalContext(), answers, query, dicom.GetData(), dicom.GetSize());
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54
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55 if (code != OrthancPluginErrorCode_Success)
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56 {
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57 ORTHANC_PLUGINS_LOG_ERROR("Error while adding an answer to a worklist request");
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58 ORTHANC_PLUGINS_THROW_PLUGIN_ERROR_CODE(code);
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59 }
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60
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61 return true;
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62 }
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63
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64 return false;
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65 }
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66
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67
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68 static OrthancPlugins::FindMatcher* CreateMatcher(const OrthancPluginWorklistQuery* query,
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69 const char* issuerAet)
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70 {
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71 // Extract the DICOM instance underlying the C-Find query
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72 OrthancPlugins::MemoryBuffer dicom;
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73 dicom.GetDicomQuery(query);
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74
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75 // Convert the DICOM as JSON, and dump it to the user in "--verbose" mode
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76 Json::Value json;
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77 dicom.DicomToJson(json, OrthancPluginDicomToJsonFormat_Short,
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78 static_cast<OrthancPluginDicomToJsonFlags>(0), 0);
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79
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80 ORTHANC_PLUGINS_LOG_INFO("Received worklist query from remote modality " +
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81 std::string(issuerAet) + ":\n" + json.toStyledString());
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82
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83 if (!filterIssuerAet_)
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84 {
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85 return new OrthancPlugins::FindMatcher(query);
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86 }
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87 else
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88 {
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89 // Alternative sample showing how to fine-tune an incoming C-Find
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90 // request, before matching it against the worklist database. The
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91 // code below will restrict the original DICOM request by
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92 // requesting the ScheduledStationAETitle to correspond to the AET
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93 // of the C-Find issuer. This code will make the integration test
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94 // "test_filter_issuer_aet" succeed (cf. the orthanc-tests repository).
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95
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96 static const char* SCHEDULED_PROCEDURE_STEP_SEQUENCE = "0040,0100";
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97 static const char* SCHEDULED_STATION_AETITLE = "0040,0001";
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98 static const char* PREGNANCY_STATUS = "0010,21c0";
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99
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100 if (!json.isMember(SCHEDULED_PROCEDURE_STEP_SEQUENCE))
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101 {
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102 // Create a ScheduledProcedureStepSequence sequence, with one empty element
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103 json[SCHEDULED_PROCEDURE_STEP_SEQUENCE] = Json::arrayValue;
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104 json[SCHEDULED_PROCEDURE_STEP_SEQUENCE].append(Json::objectValue);
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105 }
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106
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107 Json::Value& v = json[SCHEDULED_PROCEDURE_STEP_SEQUENCE];
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108
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109 if (v.type() != Json::arrayValue ||
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110 v.size() != 1 ||
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111 v[0].type() != Json::objectValue)
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112 {
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113 ORTHANC_PLUGINS_THROW_EXCEPTION(BadFileFormat);
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114 }
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115
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116 // Set the ScheduledStationAETitle if none was provided
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117 if (!v[0].isMember(SCHEDULED_STATION_AETITLE) ||
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118 v[0].type() != Json::stringValue ||
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119 v[0][SCHEDULED_STATION_AETITLE].asString().size() == 0 ||
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120 v[0][SCHEDULED_STATION_AETITLE].asString() == "*")
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121 {
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122 v[0][SCHEDULED_STATION_AETITLE] = issuerAet;
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123 }
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124
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125 if (json.isMember(PREGNANCY_STATUS) &&
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126 json[PREGNANCY_STATUS].asString().size() == 0)
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127 {
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128 json.removeMember(PREGNANCY_STATUS);
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129 }
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130
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131 // Encode the modified JSON as a DICOM instance, then convert it to a C-Find matcher
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132 OrthancPlugins::MemoryBuffer modified;
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133 modified.CreateDicom(json, OrthancPluginCreateDicomFlags_None);
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134
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135 return new OrthancPlugins::FindMatcher(modified);
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136 }
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137 }
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138
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139
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140
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141 OrthancPluginErrorCode Callback(OrthancPluginWorklistAnswers* answers,
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142 const OrthancPluginWorklistQuery* query,
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143 const char* issuerAet,
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144 const char* calledAet)
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145 {
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146 try
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147 {
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148 // Construct an object to match the worklists in the database against the C-Find query
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149 std::unique_ptr<OrthancPlugins::FindMatcher> matcher(CreateMatcher(query, issuerAet));
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150
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151 // Loop over the regular files in the database folder
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152 namespace fs = boost::filesystem;
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153
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154 fs::path source(folder_);
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155 fs::directory_iterator end;
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156
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157 try
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158 {
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159 unsigned int parsedFilesCount = 0;
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160 unsigned int matchedWorklistCount = 0;
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161
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162 for (fs::directory_iterator it(source); it != end; ++it)
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163 {
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164 fs::file_type type(it->status().type());
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165
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166 if (type == fs::regular_file ||
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167 type == fs::reparse_file) // cf. BitBucket issue #11
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168 {
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169 std::string extension = it->path().extension().string();
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170 std::transform(extension.begin(), extension.end(), extension.begin(), tolower); // Convert to lowercase
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171
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172 if (extension == ".wl")
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173 {
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174 parsedFilesCount++;
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175 // We found a worklist (i.e. a DICOM find with extension ".wl"), match it against the query
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176 if (MatchWorklist(answers, query, *matcher, it->path().string()))
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177 {
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178 if (limitAnswers_ != 0 &&
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179 matchedWorklistCount >= limitAnswers_)
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180 {
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181 // Too many answers are to be returned wrt. the
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182 // "LimitAnswers" configuration parameter. Mark the
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183 // C-FIND result as incomplete.
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184 OrthancPluginWorklistMarkIncomplete(OrthancPlugins::GetGlobalContext(), answers);
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185 return OrthancPluginErrorCode_Success;
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186 }
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187
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188 ORTHANC_PLUGINS_LOG_INFO("Worklist matched: " + it->path().string());
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189 matchedWorklistCount++;
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190 }
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191 }
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192 }
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193 }
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194
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195 ORTHANC_PLUGINS_LOG_INFO("Worklist C-Find: parsed " + boost::lexical_cast<std::string>(parsedFilesCount) +
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196 " files, found " + boost::lexical_cast<std::string>(matchedWorklistCount) + " match(es)");
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197 }
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198 catch (fs::filesystem_error&)
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199 {
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200 ORTHANC_PLUGINS_LOG_ERROR("Inexistent folder while scanning for worklists: " + source.string());
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201 return OrthancPluginErrorCode_DirectoryExpected;
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202 }
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203
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204 return OrthancPluginErrorCode_Success;
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205 }
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206 catch (OrthancPlugins::PluginException& e)
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207 {
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208 return e.GetErrorCode();
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209 }
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210 }
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211
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212
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213 extern "C"
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214 {
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215 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* c)
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216 {
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217 OrthancPlugins::SetGlobalContext(c, MODALITY_WORKLISTS_NAME);
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218
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219 /* Check the version of the Orthanc core */
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220 if (OrthancPluginCheckVersion(c) == 0)
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221 {
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222 OrthancPlugins::ReportMinimalOrthancVersion(ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
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223 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
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224 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
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225 return -1;
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226 }
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227
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228 ORTHANC_PLUGINS_LOG_WARNING("Sample worklist plugin is initializing");
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229 OrthancPluginSetDescription2(c, MODALITY_WORKLISTS_NAME, "Serve DICOM modality worklists from a folder with Orthanc.");
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230
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231 OrthancPlugins::OrthancConfiguration configuration;
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232
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233 OrthancPlugins::OrthancConfiguration worklists;
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234 configuration.GetSection(worklists, "Worklists");
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235
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236 bool enabled = worklists.GetBooleanValue("Enable", false);
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237 if (enabled)
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238 {
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239 if (worklists.LookupStringValue(folder_, "Database"))
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240 {
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241 ORTHANC_PLUGINS_LOG_WARNING("The database of worklists will be read from folder: " + folder_);
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242 OrthancPluginRegisterWorklistCallback(OrthancPlugins::GetGlobalContext(), Callback);
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243 }
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244 else
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245 {
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246 ORTHANC_PLUGINS_LOG_ERROR("The configuration option \"Worklists.Database\" must contain a path");
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247 return -1;
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248 }
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249
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250 filterIssuerAet_ = worklists.GetBooleanValue("FilterIssuerAet", false);
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251 limitAnswers_ = worklists.GetUnsignedIntegerValue("LimitAnswers", 0);
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252 }
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253 else
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254 {
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255 ORTHANC_PLUGINS_LOG_WARNING("Worklist server is disabled by the configuration file");
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256 }
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257
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258 return 0;
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259 }
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260
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261
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262 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
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263 {
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264 ORTHANC_PLUGINS_LOG_WARNING("Sample worklist plugin is finalizing");
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265 }
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266
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267
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268 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
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269 {
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270 return MODALITY_WORKLISTS_NAME;
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271 }
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272
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273
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274 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
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275 {
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276 return MODALITY_WORKLISTS_VERSION;
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277 }
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278 }