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annotate Plugins/Samples/ModalityWorklists/Plugin.cpp @ 2216:9a8fab016145

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sample worklist plugin fine-tuning the C-Find query
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 12 Dec 2016 11:01:09 +0100
parents 028214a95194
children 8f5b60647654 a78d15509a1c
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * This program is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty of
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13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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14 * General Public License for more details.
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15 *
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16 * You should have received a copy of the GNU General Public License
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17 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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18 **/
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19
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20
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21 #include "../Common/OrthancPluginCppWrapper.h"
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22
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23 #include <boost/filesystem.hpp>
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24 #include <json/value.h>
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25 #include <json/reader.h>
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26 #include <string.h>
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27 #include <iostream>
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28 #include <algorithm>
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29
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30 static OrthancPluginContext* context_ = NULL;
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31 static std::string folder_;
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32
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33
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34 /**
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35 * This is the main function for matching a DICOM worklist against a query.
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36 **/
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37 static void MatchWorklist(OrthancPluginWorklistAnswers* answers,
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38 const OrthancPluginWorklistQuery* query,
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39 const OrthancPlugins::FindMatcher& matcher,
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40 const std::string& path)
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41 {
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42 OrthancPlugins::MemoryBuffer dicom(context_);
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43 dicom.ReadFile(path);
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44
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45 if (matcher.IsMatch(dicom))
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46 {
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47 // This DICOM file matches the worklist query, add it to the answers
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48 OrthancPluginErrorCode code = OrthancPluginWorklistAddAnswer
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49 (context_, answers, query, dicom.GetData(), dicom.GetSize());
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50
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51 if (code != OrthancPluginErrorCode_Success)
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52 {
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53 OrthancPlugins::LogError(context_, "Error while adding an answer to a worklist request");
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54 ORTHANC_PLUGINS_THROW_EXCEPTION(code);
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55 }
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56 }
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57 }
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59
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60 static OrthancPlugins::FindMatcher* CreateMatcher(const OrthancPluginWorklistQuery* query,
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61 const char* remoteAet)
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62 {
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63 // Extract the DICOM instance underlying the C-Find query
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64 OrthancPlugins::MemoryBuffer dicom(context_);
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65 dicom.GetDicomQuery(query);
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66
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67 // Convert the DICOM as JSON, and dump it to the user in "--verbose" mode
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68 Json::Value json;
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69 dicom.DicomToJson(json, OrthancPluginDicomToJsonFormat_Short,
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70 static_cast<OrthancPluginDicomToJsonFlags>(0), 0);
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71
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72 OrthancPlugins::LogInfo(context_, "Received worklist query from remote modality " +
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73 std::string(remoteAet) + ":\n" + json.toStyledString());
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74
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75 #if 1
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76 return new OrthancPlugins::FindMatcher(context_, query);
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77
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78 #else
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79 // Alternative sample showing how to fine-tune an incoming C-Find
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80 // request, before matching it against the worklist database. The
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81 // code below will restrict the original DICOM request by requesting
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82 // the ScheduledStationAETitle to correspond to the AET of the
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83 // issuer. This code will make the integration test "test_other_aet"
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84 // succeed (cf. the orthanc-tests repository).
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85
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86 static const char* SCHEDULED_PROCEDURE_STEP_SEQUENCE = "0040,0100";
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87 static const char* SCHEDULED_STATION_AETITLE = "0040,0001";
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88
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89 if (!json.isMember(SCHEDULED_PROCEDURE_STEP_SEQUENCE))
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90 {
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91 // Create a ScheduledProcedureStepSequence sequence, with one empty element
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92 json[SCHEDULED_PROCEDURE_STEP_SEQUENCE] = Json::arrayValue;
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93 json[SCHEDULED_PROCEDURE_STEP_SEQUENCE].append(Json::objectValue);
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94 }
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95
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96 Json::Value& v = json[SCHEDULED_PROCEDURE_STEP_SEQUENCE];
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97
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98 if (v.type() != Json::arrayValue ||
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99 v.size() != 1 ||
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100 v[0].type() != Json::objectValue)
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101 {
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102 ORTHANC_PLUGINS_THROW_EXCEPTION(OrthancPluginErrorCode_BadFileFormat);
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103 }
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104
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105 // Set the ScheduledStationAETitle if none was provided
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106 if (!v[0].isMember(SCHEDULED_STATION_AETITLE) ||
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107 v[0].type() != Json::stringValue ||
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108 v[0][SCHEDULED_STATION_AETITLE].asString().size() == 0 ||
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109 v[0][SCHEDULED_STATION_AETITLE].asString() == "*")
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110 {
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111 v[0][SCHEDULED_STATION_AETITLE] = remoteAet;
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112 }
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113
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114 if (json.isMember("0010,21c0") &&
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115 json["0010,21c0"].asString().size() == 0)
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116 {
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117 json.removeMember("0010,21c0");
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118 }
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119
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120 // Encode the modified JSON as a DICOM instance, then convert it to a C-Find matcher
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121 OrthancPlugins::MemoryBuffer modified(context_);
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122 modified.CreateDicom(json, OrthancPluginCreateDicomFlags_None);
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123 return new OrthancPlugins::FindMatcher(context_, modified);
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124 #endif
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125 }
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126
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127
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128
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129 OrthancPluginErrorCode Callback(OrthancPluginWorklistAnswers* answers,
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130 const OrthancPluginWorklistQuery* query,
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131 const char* remoteAet,
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132 const char* calledAet)
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133 {
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134 try
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135 {
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136 // Construct an object to match the worklists in the database against the C-Find query
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137 std::auto_ptr<OrthancPlugins::FindMatcher> matcher(CreateMatcher(query, remoteAet));
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138
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139 // Loop over the regular files in the database folder
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140 namespace fs = boost::filesystem;
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141
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142 fs::path source(folder_);
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143 fs::directory_iterator end;
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144
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145 try
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146 {
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147 for (fs::directory_iterator it(source); it != end; ++it)
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148 {
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149 fs::file_type type(it->status().type());
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150
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151 if (type == fs::regular_file ||
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152 type == fs::reparse_file) // cf. BitBucket issue #11
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153 {
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154 std::string extension = fs::extension(it->path());
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155 std::transform(extension.begin(), extension.end(), extension.begin(), tolower); // Convert to lowercase
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156
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157 if (extension == ".wl")
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158 {
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159 // We found a worklist (i.e. a DICOM find with extension ".wl"), match it against the query
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160 MatchWorklist(answers, query, *matcher, it->path().string());
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161 }
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162 }
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163 }
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164 }
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165 catch (fs::filesystem_error&)
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166 {
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167 OrthancPlugins::LogError(context_, "Inexistent folder while scanning for worklists: " + source.string());
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168 return OrthancPluginErrorCode_DirectoryExpected;
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169 }
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170
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171 // Uncomment the following line if too many answers are to be returned
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172 // OrthancPluginMarkWorklistAnswersIncomplete(context_, answers);
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173
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174 return OrthancPluginErrorCode_Success;
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175 }
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176 catch (OrthancPlugins::PluginException& e)
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177 {
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178 return e.GetErrorCode();
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179 }
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180 }
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181
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182
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183 extern "C"
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184 {
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185 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* c)
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186 {
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187 context_ = c;
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188
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189 /* Check the version of the Orthanc core */
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190 if (OrthancPluginCheckVersion(c) == 0)
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191 {
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192 char info[1024];
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193 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
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194 context_->orthancVersion,
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195 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
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196 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
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197 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
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198 OrthancPluginLogError(context_, info);
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199 return -1;
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200 }
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201
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diff changeset
202 OrthancPlugins::LogWarning(context_, "Sample worklist plugin is initializing");
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203 OrthancPluginSetDescription(context_, "Serve DICOM modality worklists from a folder with Orthanc.");
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204
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205 OrthancPlugins::OrthancConfiguration configuration(context_);
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206
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207 OrthancPlugins::OrthancConfiguration worklists;
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208 configuration.GetSection(worklists, "Worklists");
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209
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diff changeset
210 bool enabled = worklists.GetBooleanValue("Enable", false);
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211 if (enabled)
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212 {
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213 if (worklists.LookupStringValue(folder_, "Database"))
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214 {
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215 OrthancPlugins::LogWarning(context_, "The database of worklists will be read from folder: " + folder_);
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diff changeset
216 OrthancPluginRegisterWorklistCallback(context_, Callback);
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217 }
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218 else
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219 {
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220 OrthancPlugins::LogError(context_, "The configuration option \"Worklists.Database\" must contain a path");
395522e46b2b refactoring of the worklist sample using OrthancPluginCppWrapper
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221 return -1;
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222 }
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223 }
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224 else
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225 {
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226 OrthancPlugins::LogWarning(context_, "Worklists server is disabled by the configuration file");
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227 }
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228
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229 return 0;
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230 }
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231
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232
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233 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
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234 {
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235 OrthancPluginLogWarning(context_, "Sample worklist plugin is finalizing");
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236 }
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237
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238
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239 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
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240 {
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241 return "worklists";
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242 }
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243
138664eb59de sample worklist plugin
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244
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245 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
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246 {
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247 return MODALITY_WORKLISTS_VERSION;
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248 }
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249 }