Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 2517:d3d306bc4b99
refactoring
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 29 Mar 2018 14:35:48 +0200 |
parents | 8cc3ca64a534 |
children | 63d2cc0fb40a |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
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37 #include "../../Core/Logging.h" |
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38 #include "../../Core/DicomParsing/FromDcmtkBridge.h" |
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39 #include "../ServerContext.h" |
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41 |
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42 #include <boost/lexical_cast.hpp> |
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43 #include <boost/algorithm/string/predicate.hpp> |
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44 |
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45 namespace Orthanc |
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46 { |
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47 // Modification of DICOM instances ------------------------------------------ |
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48 |
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49 enum TagOperation |
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50 { |
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51 TagOperation_Keep, |
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52 TagOperation_Remove |
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53 }; |
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54 |
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55 static bool IsDatabaseKey(const DicomTag& tag) |
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56 { |
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57 return (tag == DICOM_TAG_PATIENT_ID || |
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58 tag == DICOM_TAG_STUDY_INSTANCE_UID || |
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59 tag == DICOM_TAG_SERIES_INSTANCE_UID || |
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60 tag == DICOM_TAG_SOP_INSTANCE_UID); |
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61 } |
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62 |
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63 static void ParseListOfTags(DicomModification& target, |
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64 const Json::Value& query, |
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65 TagOperation operation, |
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66 bool force) |
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67 { |
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68 if (!query.isArray()) |
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69 { |
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70 throw OrthancException(ErrorCode_BadRequest); |
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71 } |
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72 |
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73 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
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74 { |
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75 std::string name = query[i].asString(); |
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76 |
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77 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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78 |
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79 if (!force && IsDatabaseKey(tag)) |
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80 { |
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81 LOG(ERROR) << "Marking tag \"" << name << "\" as to be " |
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82 << (operation == TagOperation_Keep ? "kept" : "removed") |
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83 << " requires the \"Force\" option to be set to true"; |
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84 throw OrthancException(ErrorCode_BadRequest); |
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85 } |
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86 |
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87 switch (operation) |
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88 { |
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89 case TagOperation_Keep: |
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90 target.Keep(tag); |
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91 VLOG(1) << "Keep: " << name << " " << tag << std::endl; |
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92 break; |
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93 |
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94 case TagOperation_Remove: |
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95 target.Remove(tag); |
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96 VLOG(1) << "Remove: " << name << " " << tag << std::endl; |
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97 break; |
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98 |
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99 default: |
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100 throw OrthancException(ErrorCode_InternalError); |
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101 } |
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102 } |
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103 } |
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104 |
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105 |
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106 static void ParseReplacements(DicomModification& target, |
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107 const Json::Value& replacements, |
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108 bool force) |
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109 { |
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110 if (!replacements.isObject()) |
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111 { |
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112 throw OrthancException(ErrorCode_BadRequest); |
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113 } |
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114 |
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115 Json::Value::Members members = replacements.getMemberNames(); |
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116 for (size_t i = 0; i < members.size(); i++) |
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117 { |
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118 const std::string& name = members[i]; |
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119 const Json::Value& value = replacements[name]; |
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120 |
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121 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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122 |
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123 if (!force && IsDatabaseKey(tag)) |
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124 { |
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125 LOG(ERROR) << "Marking tag \"" << name << "\" as to be replaced " |
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126 << "requires the \"Force\" option to be set to true"; |
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127 throw OrthancException(ErrorCode_BadRequest); |
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128 } |
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129 |
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130 target.Replace(tag, value, false); |
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131 |
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132 VLOG(1) << "Replace: " << name << " " << tag |
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133 << " == " << value.toStyledString() << std::endl; |
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134 } |
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135 } |
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136 |
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137 |
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138 static std::string GeneratePatientName(ServerContext& context) |
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139 { |
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140 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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141 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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142 } |
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143 |
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144 |
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145 static bool GetBooleanValue(const std::string& member, |
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146 const Json::Value& json, |
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147 bool defaultValue) |
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148 { |
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149 if (!json.isMember(member)) |
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150 { |
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151 return defaultValue; |
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152 } |
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153 else if (json[member].type() == Json::booleanValue) |
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154 { |
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155 return json[member].asBool(); |
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156 } |
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157 else |
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158 { |
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159 LOG(ERROR) << "Member \"" << member << "\" should be a Boolean value"; |
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160 throw OrthancException(ErrorCode_BadFileFormat); |
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161 } |
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162 } |
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163 |
1010 | 164 |
2517 | 165 void OrthancRestApi::ParseModifyRequest(DicomModification& target, |
1010 | 166 const Json::Value& request) |
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167 { |
2517 | 168 if (!request.isObject()) |
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169 { |
2517 | 170 throw OrthancException(ErrorCode_BadFileFormat); |
171 } | |
172 | |
173 bool force = GetBooleanValue("Force", request, false); | |
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174 |
2517 | 175 if (GetBooleanValue("RemovePrivateTags", request, false)) |
176 { | |
177 target.SetRemovePrivateTags(true); | |
178 } | |
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179 |
2517 | 180 if (request.isMember("Remove")) |
181 { | |
182 ParseListOfTags(target, request["Remove"], TagOperation_Remove, force); | |
183 } | |
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184 |
2517 | 185 if (request.isMember("Replace")) |
186 { | |
187 ParseReplacements(target, request["Replace"], force); | |
188 } | |
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189 |
2517 | 190 // The "Keep" operation only makes sense for the tags |
191 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid | |
192 // this feature as much as possible, as this breaks the DICOM | |
193 // model of the real world, except if you know exactly what | |
194 // you're doing! | |
195 if (request.isMember("Keep")) | |
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196 { |
2517 | 197 ParseListOfTags(target, request["Keep"], TagOperation_Keep, force); |
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198 } |
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199 } |
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200 |
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201 |
2517 | 202 static void ParseAnonymizationRequest(DicomModification& target, |
203 const Json::Value& request, | |
204 ServerContext& context) | |
1010 | 205 { |
2517 | 206 if (!request.isObject()) |
1010 | 207 { |
2517 | 208 throw OrthancException(ErrorCode_BadFileFormat); |
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209 } |
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210 |
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211 bool force = GetBooleanValue("Force", request, false); |
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212 |
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213 // As of Orthanc 1.3.0, the default anonymization is done |
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214 // according to PS 3.15-2017c Table E.1-1 (basic profile) |
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215 DicomVersion version = DicomVersion_2017c; |
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216 if (request.isMember("DicomVersion")) |
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217 { |
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218 if (request["DicomVersion"].type() != Json::stringValue) |
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219 { |
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220 throw OrthancException(ErrorCode_BadFileFormat); |
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221 } |
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222 else |
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223 { |
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224 version = StringToDicomVersion(request["DicomVersion"].asString()); |
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225 } |
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226 } |
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227 |
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228 target.SetupAnonymization(version); |
2517 | 229 |
230 std::string patientName = target.GetReplacementAsString(DICOM_TAG_PATIENT_NAME); | |
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231 |
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232 if (GetBooleanValue("KeepPrivateTags", request, false)) |
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233 { |
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234 target.SetRemovePrivateTags(false); |
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235 } |
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236 |
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237 if (request.isMember("Remove")) |
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238 { |
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239 ParseListOfTags(target, request["Remove"], TagOperation_Remove, force); |
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240 } |
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241 |
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242 if (request.isMember("Replace")) |
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243 { |
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244 ParseReplacements(target, request["Replace"], force); |
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245 } |
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246 |
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247 if (request.isMember("Keep")) |
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248 { |
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249 ParseListOfTags(target, request["Keep"], TagOperation_Keep, force); |
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250 } |
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251 |
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252 if (target.IsReplaced(DICOM_TAG_PATIENT_NAME) && |
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253 target.GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName) |
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254 { |
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255 // Overwrite the random Patient's Name by one that is more |
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256 // user-friendly (provided none was specified by the user) |
2517 | 257 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(context), true); |
258 } | |
259 } | |
260 | |
261 | |
262 static void ParseModifyRequest(DicomModification& target, | |
263 const RestApiPostCall& call) | |
264 { | |
265 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"}}' | |
266 | |
267 Json::Value request; | |
268 if (call.ParseJsonRequest(request)) | |
269 { | |
270 OrthancRestApi::ParseModifyRequest(target, request); | |
271 } | |
272 else | |
273 { | |
274 throw OrthancException(ErrorCode_BadFileFormat); | |
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275 } |
2517 | 276 } |
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277 |
2517 | 278 |
279 static void ParseAnonymizationRequest(DicomModification& target, | |
280 RestApiPostCall& call) | |
281 { | |
282 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm | |
283 | |
284 Json::Value request; | |
285 if (call.ParseJsonRequest(request) && | |
286 request.isObject()) | |
287 { | |
288 ParseAnonymizationRequest(target, request, OrthancRestApi::GetContext(call)); | |
289 } | |
290 else | |
291 { | |
292 throw OrthancException(ErrorCode_BadFileFormat); | |
293 } | |
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294 } |
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295 |
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296 |
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297 static void AnonymizeOrModifyInstance(DicomModification& modification, |
974 | 298 RestApiPostCall& call) |
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299 { |
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300 std::string id = call.GetUriComponent("id", ""); |
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301 |
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302 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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303 |
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304 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone()); |
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305 modification.Apply(*modified); |
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306 modified->Answer(call.GetOutput()); |
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307 } |
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308 |
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309 |
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310 static void AnonymizeOrModifyResource(DicomModification& modification, |
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311 MetadataType metadataType, |
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312 ChangeType changeType, |
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313 ResourceType resourceType, |
974 | 314 RestApiPostCall& call) |
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315 { |
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316 bool isFirst = true; |
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317 Json::Value result(Json::objectValue); |
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318 |
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319 ServerContext& context = OrthancRestApi::GetContext(call); |
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320 |
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321 typedef std::list<std::string> Instances; |
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322 Instances instances; |
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323 std::string id = call.GetUriComponent("id", ""); |
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324 context.GetIndex().GetChildInstances(instances, id); |
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325 |
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326 if (instances.empty()) |
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327 { |
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328 return; |
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329 } |
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330 |
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331 |
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332 /** |
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333 * Loop over all the instances of the resource. |
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334 **/ |
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335 |
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336 for (Instances::const_iterator it = instances.begin(); |
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337 it != instances.end(); ++it) |
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338 { |
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339 LOG(INFO) << "Modifying instance " << *it; |
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340 |
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341 std::auto_ptr<ServerContext::DicomCacheLocker> locker; |
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342 |
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343 try |
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344 { |
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345 locker.reset(new ServerContext::DicomCacheLocker(OrthancRestApi::GetContext(call), *it)); |
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346 } |
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347 catch (OrthancException&) |
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348 { |
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349 // This child instance has been removed in between |
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350 continue; |
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351 } |
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352 |
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353 |
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354 ParsedDicomFile& original = locker->GetDicom(); |
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355 DicomInstanceHasher originalHasher = original.GetHasher(); |
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356 |
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357 |
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358 /** |
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359 * Compute the resulting DICOM instance. |
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360 **/ |
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361 |
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362 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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363 modification.Apply(*modified); |
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364 |
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365 DicomInstanceToStore toStore; |
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366 toStore.SetRestOrigin(call); |
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367 toStore.SetParsedDicomFile(*modified); |
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368 |
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369 |
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370 /** |
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371 * Prepare the metadata information to associate with the |
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372 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom). |
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373 **/ |
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374 |
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375 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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376 |
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377 if (originalHasher.HashSeries() != modifiedHasher.HashSeries()) |
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378 { |
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379 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher.HashSeries()); |
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380 } |
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381 |
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382 if (originalHasher.HashStudy() != modifiedHasher.HashStudy()) |
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383 { |
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384 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher.HashStudy()); |
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385 } |
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386 |
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387 if (originalHasher.HashPatient() != modifiedHasher.HashPatient()) |
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388 { |
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389 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher.HashPatient()); |
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390 } |
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391 |
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392 assert(*it == originalHasher.HashInstance()); |
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393 toStore.AddMetadata(ResourceType_Instance, metadataType, *it); |
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394 |
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395 |
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396 /** |
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397 * Store the resulting DICOM instance into the Orthanc store. |
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398 **/ |
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399 |
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400 std::string modifiedInstance; |
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401 if (context.Store(modifiedInstance, toStore) != StoreStatus_Success) |
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402 { |
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403 LOG(ERROR) << "Error while storing a modified instance " << *it; |
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404 throw OrthancException(ErrorCode_CannotStoreInstance); |
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405 } |
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406 |
1002
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407 // Sanity checks in debug mode |
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408 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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409 |
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410 |
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411 /** |
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412 * Compute the JSON object that is returned by the REST call. |
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413 **/ |
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414 |
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415 if (isFirst) |
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416 { |
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417 std::string newId; |
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418 |
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419 switch (resourceType) |
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420 { |
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421 case ResourceType_Series: |
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422 newId = modifiedHasher.HashSeries(); |
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423 break; |
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424 |
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425 case ResourceType_Study: |
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426 newId = modifiedHasher.HashStudy(); |
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427 break; |
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428 |
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429 case ResourceType_Patient: |
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430 newId = modifiedHasher.HashPatient(); |
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431 break; |
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432 |
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433 default: |
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434 throw OrthancException(ErrorCode_InternalError); |
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435 } |
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436 |
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437 result["Type"] = EnumerationToString(resourceType); |
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438 result["ID"] = newId; |
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439 result["Path"] = GetBasePath(resourceType, newId); |
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440 result["PatientID"] = modifiedHasher.HashPatient(); |
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441 isFirst = false; |
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442 } |
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443 } |
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444 |
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445 call.GetOutput().AnswerJson(result); |
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446 } |
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447 |
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448 |
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449 |
974 | 450 static void ModifyInstance(RestApiPostCall& call) |
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451 { |
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452 DicomModification modification; |
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453 modification.SetAllowManualIdentifiers(true); |
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454 |
2517 | 455 ParseModifyRequest(modification, call); |
456 | |
457 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) | |
458 { | |
459 modification.SetLevel(ResourceType_Patient); | |
460 } | |
461 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) | |
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462 { |
2517 | 463 modification.SetLevel(ResourceType_Study); |
464 } | |
465 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) | |
466 { | |
467 modification.SetLevel(ResourceType_Series); | |
468 } | |
469 else | |
470 { | |
471 modification.SetLevel(ResourceType_Instance); | |
472 } | |
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473 |
2517 | 474 AnonymizeOrModifyInstance(modification, call); |
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475 } |
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476 |
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477 |
974 | 478 static void AnonymizeInstance(RestApiPostCall& call) |
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479 { |
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480 DicomModification modification; |
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481 modification.SetAllowManualIdentifiers(true); |
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482 |
2517 | 483 ParseAnonymizationRequest(modification, call); |
484 | |
485 AnonymizeOrModifyInstance(modification, call); | |
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486 } |
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487 |
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488 |
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489 template <enum ChangeType changeType, |
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490 enum ResourceType resourceType> |
974 | 491 static void ModifyResource(RestApiPostCall& call) |
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492 { |
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493 DicomModification modification; |
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494 |
2517 | 495 ParseModifyRequest(modification, call); |
496 | |
497 modification.SetLevel(resourceType); | |
498 AnonymizeOrModifyResource(modification, MetadataType_ModifiedFrom, | |
499 changeType, resourceType, call); | |
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500 } |
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501 |
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502 |
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503 template <enum ChangeType changeType, |
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504 enum ResourceType resourceType> |
974 | 505 static void AnonymizeResource(RestApiPostCall& call) |
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506 { |
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507 DicomModification modification; |
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508 |
2517 | 509 ParseAnonymizationRequest(modification, call); |
510 | |
511 AnonymizeOrModifyResource(modification, MetadataType_AnonymizedFrom, | |
512 changeType, resourceType, call); | |
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513 } |
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514 |
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515 |
1569 | 516 static void StoreCreatedInstance(std::string& id /* out */, |
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517 RestApiPostCall& call, |
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518 ParsedDicomFile& dicom) |
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519 { |
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520 DicomInstanceToStore toStore; |
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521 toStore.SetRestOrigin(call); |
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522 toStore.SetParsedDicomFile(dicom); |
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523 |
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524 ServerContext& context = OrthancRestApi::GetContext(call); |
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525 StoreStatus status = context.Store(id, toStore); |
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526 |
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527 if (status == StoreStatus_Failure) |
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528 { |
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529 throw OrthancException(ErrorCode_CannotStoreInstance); |
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530 } |
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531 } |
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532 |
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533 |
1569 | 534 static void CreateDicomV1(ParsedDicomFile& dicom, |
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535 RestApiPostCall& call, |
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536 const Json::Value& request) |
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537 { |
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538 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
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539 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
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540 |
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541 assert(request.isObject()); |
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542 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom"; |
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543 |
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544 Json::Value::Members members = request.getMemberNames(); |
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545 for (size_t i = 0; i < members.size(); i++) |
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546 { |
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547 const std::string& name = members[i]; |
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548 if (request[name].type() != Json::stringValue) |
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549 { |
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550 throw OrthancException(ErrorCode_CreateDicomNotString); |
1555
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Creation of DICOM files with encapsulated PDF
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551 } |
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Creation of DICOM files with encapsulated PDF
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552 |
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Creation of DICOM files with encapsulated PDF
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553 std::string value = request[name].asString(); |
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Creation of DICOM files with encapsulated PDF
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554 |
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Creation of DICOM files with encapsulated PDF
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555 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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556 if (tag == DICOM_TAG_PIXEL_DATA) |
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557 { |
1562 | 558 dicom.EmbedContent(value); |
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Creation of DICOM files with encapsulated PDF
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559 } |
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Creation of DICOM files with encapsulated PDF
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560 else |
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Creation of DICOM files with encapsulated PDF
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561 { |
1982
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Modification of instances can now replace PixelData
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562 // This is V1, don't try and decode data URI scheme |
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Modification of instances can now replace PixelData
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diff
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|
563 dicom.ReplacePlainString(tag, value); |
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564 } |
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565 } |
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566 } |
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567 |
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Creation of DICOM files with encapsulated PDF
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568 |
1569 | 569 static void InjectTags(ParsedDicomFile& dicom, |
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570 const Json::Value& tags, |
1689 | 571 bool decodeBinaryTags) |
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572 { |
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573 if (tags.type() != Json::objectValue) |
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574 { |
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575 throw OrthancException(ErrorCode_BadRequest); |
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576 } |
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577 |
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578 // Inject the user-specified tags |
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579 Json::Value::Members members = tags.getMemberNames(); |
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580 for (size_t i = 0; i < members.size(); i++) |
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581 { |
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582 const std::string& name = members[i]; |
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Support of binary tags encoded using data URI scheme
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583 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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584 |
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585 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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586 { |
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587 if (tag != DICOM_TAG_PATIENT_ID && |
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588 tag != DICOM_TAG_ACQUISITION_DATE && |
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589 tag != DICOM_TAG_ACQUISITION_TIME && |
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590 tag != DICOM_TAG_CONTENT_DATE && |
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591 tag != DICOM_TAG_CONTENT_TIME && |
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592 tag != DICOM_TAG_INSTANCE_CREATION_DATE && |
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|
593 tag != DICOM_TAG_INSTANCE_CREATION_TIME && |
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594 tag != DICOM_TAG_SERIES_DATE && |
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595 tag != DICOM_TAG_SERIES_TIME && |
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596 tag != DICOM_TAG_STUDY_DATE && |
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597 tag != DICOM_TAG_STUDY_TIME && |
1565
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598 dicom.HasTag(tag)) |
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599 { |
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600 throw OrthancException(ErrorCode_CreateDicomOverrideTag); |
1565
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601 } |
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|
602 |
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603 if (tag == DICOM_TAG_PIXEL_DATA) |
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604 { |
1582
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|
605 throw OrthancException(ErrorCode_CreateDicomUseContent); |
1565
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606 } |
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diff
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|
607 else |
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diff
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|
608 { |
1982
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Modification of instances can now replace PixelData
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1934
diff
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|
609 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent); |
1565
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diff
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|
610 } |
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parents:
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diff
changeset
|
611 } |
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parents:
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diff
changeset
|
612 } |
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parents:
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diff
changeset
|
613 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
614 |
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parents:
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diff
changeset
|
615 |
1564
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parents:
1562
diff
changeset
|
616 static void CreateSeries(RestApiPostCall& call, |
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creation of DICOM series
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diff
changeset
|
617 ParsedDicomFile& base /* in */, |
1641
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Support of binary tags encoded using data URI scheme
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parents:
1640
diff
changeset
|
618 const Json::Value& content, |
1689 | 619 bool decodeBinaryTags) |
1564
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diff
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|
620 { |
1b7def486e62
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parents:
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diff
changeset
|
621 assert(content.isArray()); |
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parents:
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diff
changeset
|
622 assert(content.size() > 0); |
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
623 ServerContext& context = OrthancRestApi::GetContext(call); |
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
624 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
625 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size())); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
626 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1"); |
1564
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
627 |
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
628 std::string someInstance; |
1b7def486e62
creation of DICOM series
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diff
changeset
|
629 |
1566 | 630 try |
1564
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
631 { |
1569 | 632 for (Json::ArrayIndex i = 0; i < content.size(); i++) |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
633 { |
1566 | 634 std::auto_ptr<ParsedDicomFile> dicom(base.Clone()); |
635 const Json::Value* payload = NULL; | |
636 | |
637 if (content[i].type() == Json::stringValue) | |
638 { | |
639 payload = &content[i]; | |
640 } | |
641 else if (content[i].type() == Json::objectValue) | |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
642 { |
1566 | 643 if (!content[i].isMember("Content")) |
644 { | |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
645 throw OrthancException(ErrorCode_CreateDicomNoPayload); |
1566 | 646 } |
647 | |
648 payload = &content[i]["Content"]; | |
649 | |
1569 | 650 if (content[i].isMember("Tags")) |
1570 | 651 { |
1689 | 652 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags); |
1570 | 653 } |
1565
4b23310eb7e8
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parents:
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diff
changeset
|
654 } |
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parents:
1564
diff
changeset
|
655 |
1566 | 656 if (payload == NULL || |
657 payload->type() != Json::stringValue) | |
658 { | |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
659 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1566 | 660 } |
1565
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
661 |
1566 | 662 dicom->EmbedContent(payload->asString()); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
663 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1)); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
664 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1)); |
1566 | 665 |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
666 StoreCreatedInstance(someInstance, call, *dicom); |
1565
4b23310eb7e8
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diff
changeset
|
667 } |
1566 | 668 } |
1616 | 669 catch (OrthancException&) |
1566 | 670 { |
1569 | 671 // Error: Remove the newly-created series |
672 | |
673 std::string series; | |
674 if (context.GetIndex().LookupParent(series, someInstance)) | |
1570 | 675 { |
1569 | 676 Json::Value dummy; |
677 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series); | |
1570 | 678 } |
1569 | 679 |
1616 | 680 throw; |
1564
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
681 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
682 |
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
683 std::string series; |
1b7def486e62
creation of DICOM series
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1562
diff
changeset
|
684 if (context.GetIndex().LookupParent(series, someInstance)) |
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
685 { |
1569 | 686 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success); |
1564
1b7def486e62
creation of DICOM series
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diff
changeset
|
687 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
688 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
689 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
690 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
691 static void CreateDicomV2(RestApiPostCall& call, |
1555
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
692 const Json::Value& request) |
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Creation of DICOM files with encapsulated PDF
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diff
changeset
|
693 { |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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694 assert(request.isObject()); |
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695 ServerContext& context = OrthancRestApi::GetContext(call); |
1555
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Creation of DICOM files with encapsulated PDF
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|
696 |
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Creation of DICOM files with encapsulated PDF
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697 if (!request.isMember("Tags") || |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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|
698 request["Tags"].type() != Json::objectValue) |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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|
699 { |
1569 | 700 throw OrthancException(ErrorCode_BadRequest); |
1555
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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701 } |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
702 |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1699
diff
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|
703 ParsedDicomFile dicom(true); |
1558
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fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
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1557
diff
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|
704 |
1557 | 705 { |
1565
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
706 Encoding encoding; |
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add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
707 |
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add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
708 if (request["Tags"].isMember("SpecificCharacterSet")) |
1558
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fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
709 { |
1565
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add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
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710 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString(); |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
711 if (!GetDicomEncoding(encoding, tmp)) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
712 { |
1582
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encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
713 LOG(ERROR) << "Unknown specific character set: " << std::string(tmp); |
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
714 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1565
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
715 } |
1558
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
716 } |
1565
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
717 else |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
718 { |
2381
b8969010b534
uncoupling DCMTK primitives from Orthanc::Configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2361
diff
changeset
|
719 encoding = GetDefaultDicomEncoding(); |
1565
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
720 } |
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add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
721 |
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add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
722 dicom.SetEncoding(encoding); |
1557 | 723 } |
724 | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
725 ResourceType parentType = ResourceType_Instance; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
726 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
727 if (request.isMember("Parent")) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
728 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
729 // Locate the parent tags |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
730 std::string parent = request["Parent"].asString(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
731 if (!context.GetIndex().LookupResourceType(parentType, parent)) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
732 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
733 throw OrthancException(ErrorCode_CreateDicomBadParent); |
1555
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
734 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
735 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
736 if (parentType == ResourceType_Instance) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
737 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
738 throw OrthancException(ErrorCode_CreateDicomParentIsInstance); |
1555
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
739 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
740 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
741 // Select one existing child instance of the parent resource, to |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
742 // retrieve all its tags |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
743 Json::Value siblingTags; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
744 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
745 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
746 // Retrieve all the instances of the parent resource |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
747 std::list<std::string> siblingInstances; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
748 context.GetIndex().GetChildInstances(siblingInstances, parent); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
749 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
750 if (siblingInstances.empty()) |
1569 | 751 { |
752 // Error: No instance (should never happen) | |
753 throw OrthancException(ErrorCode_InternalError); | |
1555
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
754 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
755 |
2124 | 756 context.ReadDicomAsJson(siblingTags, siblingInstances.front()); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
757 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
758 |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
759 |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
760 // Choose the same encoding as the parent resource |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
761 { |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
762 static const char* SPECIFIC_CHARACTER_SET = "0008,0005"; |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
763 |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
764 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET)) |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
765 { |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
766 Encoding encoding; |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
767 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") || |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
768 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue || |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
769 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString())) |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
770 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
771 throw OrthancException(ErrorCode_CreateDicomParentEncoding); |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
772 } |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
773 |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
774 dicom.SetEncoding(encoding); |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
775 } |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
776 } |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
777 |
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
778 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
779 // Retrieve the tags for all the parent modules |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
780 typedef std::set<DicomTag> ModuleTags; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
781 ModuleTags moduleTags; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
782 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
783 ResourceType type = parentType; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
784 for (;;) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
785 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
786 DicomTag::AddTagsForModule(moduleTags, GetModule(type)); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
787 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
788 if (type == ResourceType_Patient) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
789 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
790 break; // We're done |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
791 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
792 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
793 // Go up |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
794 std::string tmp; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
795 if (!context.GetIndex().LookupParent(tmp, parent)) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
796 { |
1569 | 797 throw OrthancException(ErrorCode_InternalError); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
798 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
799 |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
800 parent = tmp; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
801 type = GetParentResourceType(type); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
802 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
803 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
804 for (ModuleTags::const_iterator it = moduleTags.begin(); |
1616 | 805 it != moduleTags.end(); ++it) |
1555
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
806 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
807 std::string t = it->Format(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
808 if (siblingTags.isMember(t)) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
809 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
810 const Json::Value& tag = siblingTags[t]; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
811 if (tag["Type"] == "Null") |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
812 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
813 dicom.ReplacePlainString(*it, ""); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
814 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
815 else if (tag["Type"] == "String") |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
816 { |
1557 | 817 std::string value = tag["Value"].asString(); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
818 dicom.ReplacePlainString(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding())); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
819 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
820 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
821 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
822 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
823 |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
824 |
1689 | 825 bool decodeBinaryTags = true; |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
826 if (request.isMember("InterpretBinaryTags")) |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
827 { |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
828 const Json::Value& v = request["InterpretBinaryTags"]; |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
829 if (v.type() != Json::booleanValue) |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
830 { |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
831 throw OrthancException(ErrorCode_BadRequest); |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
832 } |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
833 |
1689 | 834 decodeBinaryTags = v.asBool(); |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
835 } |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
836 |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
837 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
838 // Inject time-related information |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
839 std::string date, time; |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
840 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
841 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
842 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
843 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
844 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
845 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
846 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
847 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
848 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
849 parentType == ResourceType_Study || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
850 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
851 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
852 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
853 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
854 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
855 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
856 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
857 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
858 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
859 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
860 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
861 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
862 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
863 |
1689 | 864 InjectTags(dicom, request["Tags"], decodeBinaryTags); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
865 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
866 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
867 // Inject the content (either an image, or a PDF file) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
868 if (request.isMember("Content")) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
869 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
870 const Json::Value& content = request["Content"]; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
871 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
872 if (content.type() == Json::stringValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
873 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
874 dicom.EmbedContent(request["Content"].asString()); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
875 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
876 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
877 else if (content.type() == Json::arrayValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
878 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
879 if (content.size() > 0) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
880 { |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
881 // Let's create a series instead of a single instance |
1689 | 882 CreateSeries(call, dicom, content, decodeBinaryTags); |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
883 return; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
884 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
885 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
886 else |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
887 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
888 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
889 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
890 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
891 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
892 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
893 StoreCreatedInstance(id, call, dicom); |
1569 | 894 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
895 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
896 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
897 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
898 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
899 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
900 static void CreateDicom(RestApiPostCall& call) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
901 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
902 Json::Value request; |
1569 | 903 if (!call.ParseJsonRequest(request) || |
904 !request.isObject()) | |
1570 | 905 { |
906 throw OrthancException(ErrorCode_BadRequest); | |
907 } | |
1569 | 908 |
909 if (request.isMember("Tags")) | |
1570 | 910 { |
911 CreateDicomV2(call, request); | |
912 } | |
1569 | 913 else |
1570 | 914 { |
915 // Compatibility with Orthanc <= 0.9.3 | |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1699
diff
changeset
|
916 ParsedDicomFile dicom(true); |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
917 CreateDicomV1(dicom, call, request); |
1569 | 918 |
1570 | 919 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
920 StoreCreatedInstance(id, call, dicom); |
1570 | 921 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
922 } | |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
923 } |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
924 |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
925 |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
926 void OrthancRestApi::RegisterAnonymizeModify() |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
927 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
928 Register("/instances/{id}/modify", ModifyInstance); |
787
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
929 Register("/series/{id}/modify", ModifyResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
ac18946afa74
refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
930 Register("/studies/{id}/modify", ModifyResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
931 Register("/patients/{id}/modify", ModifyResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
932 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
933 Register("/instances/{id}/anonymize", AnonymizeInstance); |
2250 | 934 Register("/series/{id}/anonymize", AnonymizeResource<ChangeType_AnonymizedSeries, ResourceType_Series>); |
935 Register("/studies/{id}/anonymize", AnonymizeResource<ChangeType_AnonymizedStudy, ResourceType_Study>); | |
936 Register("/patients/{id}/anonymize", AnonymizeResource<ChangeType_AnonymizedPatient, ResourceType_Patient>); | |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
937 |
1120
009dce4ea2f6
/tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1010
diff
changeset
|
938 Register("/tools/create-dicom", CreateDicom); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
939 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
940 } |