Mercurial > hg > orthanc

annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 2142:5a8840920121

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reorganization
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 09 Nov 2016 16:26:40 +0100
parents aa4b8895cd23
children 3b40ca7470cc
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "../PrecompiledHeadersServer.h"
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34 #include "OrthancRestApi.h"
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35
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36 #include "../../Core/Logging.h"
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37 #include "../FromDcmtkBridge.h"
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38 #include "../ServerContext.h"
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39 #include "../OrthancInitialization.h"
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40
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41 #include <boost/lexical_cast.hpp>
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42 #include <boost/algorithm/string/predicate.hpp>
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43
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44 namespace Orthanc
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45 {
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46 // Modification of DICOM instances ------------------------------------------
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47
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48 enum TagOperation
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49 {
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50 TagOperation_Keep,
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51 TagOperation_Remove
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52 };
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53
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54 static void ParseListOfTags(DicomModification& target,
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55 const Json::Value& query,
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56 TagOperation operation)
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57 {
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58 if (!query.isArray())
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59 {
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60 throw OrthancException(ErrorCode_BadRequest);
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61 }
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62
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63 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++)
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64 {
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65 std::string name = query[i].asString();
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66
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67 DicomTag tag = FromDcmtkBridge::ParseTag(name);
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68
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69 switch (operation)
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70 {
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71 case TagOperation_Keep:
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72 target.Keep(tag);
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73 VLOG(1) << "Keep: " << name << " " << tag << std::endl;
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74 break;
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75
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76 case TagOperation_Remove:
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77 target.Remove(tag);
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78 VLOG(1) << "Remove: " << name << " " << tag << std::endl;
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79 break;
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80
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81 default:
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82 throw OrthancException(ErrorCode_InternalError);
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83 }
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84 }
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85 }
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86
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87
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88 static void ParseReplacements(DicomModification& target,
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89 const Json::Value& replacements)
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90 {
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91 if (!replacements.isObject())
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92 {
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93 throw OrthancException(ErrorCode_BadRequest);
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94 }
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95
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96 Json::Value::Members members = replacements.getMemberNames();
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97 for (size_t i = 0; i < members.size(); i++)
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98 {
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99 const std::string& name = members[i];
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100 const Json::Value& value = replacements[name];
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101
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102 DicomTag tag = FromDcmtkBridge::ParseTag(name);
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103 target.Replace(tag, value);
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104
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105 VLOG(1) << "Replace: " << name << " " << tag
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106 << " == " << value.toStyledString() << std::endl;
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107 }
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108 }
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109
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110
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111 static std::string GeneratePatientName(ServerContext& context)
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112 {
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113 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence);
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114 return "Anonymized" + boost::lexical_cast<std::string>(seq);
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115 }
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116
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117
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118
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119 bool OrthancRestApi::ParseModifyRequest(DicomModification& target,
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120 const Json::Value& request)
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121 {
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122 if (request.isObject())
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123 {
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124 if (request.isMember("RemovePrivateTags"))
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125 {
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126 target.SetRemovePrivateTags(true);
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127 }
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128
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129 if (request.isMember("Remove"))
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130 {
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131 ParseListOfTags(target, request["Remove"], TagOperation_Remove);
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132 }
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133
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134 if (request.isMember("Replace"))
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135 {
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136 ParseReplacements(target, request["Replace"]);
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137 }
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138
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139 return true;
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140 }
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141 else
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142 {
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143 return false;
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144 }
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145 }
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146
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147
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148 static bool ParseModifyRequest(DicomModification& target,
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149 const RestApiPostCall& call)
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150 {
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151 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"}}'
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152
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153 Json::Value request;
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154 if (call.ParseJsonRequest(request))
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155 {
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156 return OrthancRestApi::ParseModifyRequest(target, request);
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157 }
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158 else
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159 {
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160 return false;
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161 }
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162 }
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163
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164
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165 static bool ParseAnonymizationRequest(DicomModification& target,
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166 RestApiPostCall& call)
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167 {
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168 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null,"Remove":["Modality"]}' > Anonymized.dcm
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169
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170 target.SetupAnonymization();
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171 std::string patientName = target.GetReplacementAsString(DICOM_TAG_PATIENT_NAME);
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172
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173 Json::Value request;
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174 if (call.ParseJsonRequest(request) && request.isObject())
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175 {
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176 if (request.isMember("KeepPrivateTags"))
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177 {
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178 target.SetRemovePrivateTags(false);
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179 }
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180
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181 if (request.isMember("Remove"))
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182 {
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183 ParseListOfTags(target, request["Remove"], TagOperation_Remove);
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184 }
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185
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186 if (request.isMember("Replace"))
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187 {
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188 ParseReplacements(target, request["Replace"]);
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189 }
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190
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191 if (request.isMember("Keep"))
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192 {
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193 ParseListOfTags(target, request["Keep"], TagOperation_Keep);
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194 }
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195
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196 if (target.IsReplaced(DICOM_TAG_PATIENT_NAME) &&
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197 target.GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName)
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198 {
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199 // Overwrite the random Patient's Name by one that is more
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200 // user-friendly (provided none was specified by the user)
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201 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true);
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202 }
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203
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204 return true;
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205 }
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206 else
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207 {
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208 return false;
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209 }
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210 }
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211
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212
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213 static void AnonymizeOrModifyInstance(DicomModification& modification,
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214 RestApiPostCall& call)
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215 {
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216 std::string id = call.GetUriComponent("id", "");
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217
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218 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id);
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219
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220 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone());
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diff changeset
221 modification.Apply(*modified);
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222 modified->Answer(call.GetOutput());
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223 }
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224
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225
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diff changeset
226 static void AnonymizeOrModifyResource(DicomModification& modification,
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227 MetadataType metadataType,
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228 ChangeType changeType,
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229 ResourceType resourceType,
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230 RestApiPostCall& call)
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231 {
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232 bool isFirst = true;
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233 Json::Value result(Json::objectValue);
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234
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235 ServerContext& context = OrthancRestApi::GetContext(call);
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236
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237 typedef std::list<std::string> Instances;
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238 Instances instances;
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239 std::string id = call.GetUriComponent("id", "");
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diff changeset
240 context.GetIndex().GetChildInstances(instances, id);
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241
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diff changeset
242 if (instances.empty())
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diff changeset
243 {
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diff changeset
244 return;
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diff changeset
245 }
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diff changeset
246
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diff changeset
247
751
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248 /**
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249 * Loop over all the instances of the resource.
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250 **/
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251
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252 for (Instances::const_iterator it = instances.begin();
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diff changeset
253 it != instances.end(); ++it)
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254 {
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diff changeset
255 LOG(INFO) << "Modifying instance " << *it;
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diff changeset
256
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diff changeset
257 std::auto_ptr<ServerContext::DicomCacheLocker> locker;
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diff changeset
258
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diff changeset
259 try
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diff changeset
260 {
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diff changeset
261 locker.reset(new ServerContext::DicomCacheLocker(OrthancRestApi::GetContext(call), *it));
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diff changeset
262 }
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diff changeset
263 catch (OrthancException&)
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diff changeset
264 {
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diff changeset
265 // This child instance has been removed in between
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diff changeset
266 continue;
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diff changeset
267 }
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diff changeset
268
1129
8dabdc0d3007 fix possible deadlock
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diff changeset
269
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diff changeset
270 ParsedDicomFile& original = locker->GetDicom();
751
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271 DicomInstanceHasher originalHasher = original.GetHasher();
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272
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273
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diff changeset
274 /**
1002
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275 * Compute the resulting DICOM instance.
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276 **/
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277
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278 std::auto_ptr<ParsedDicomFile> modified(original.Clone());
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279 modification.Apply(*modified);
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280
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281 DicomInstanceToStore toStore;
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282 toStore.SetRestOrigin(call);
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283 toStore.SetParsedDicomFile(*modified);
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284
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285
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286 /**
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287 * Prepare the metadata information to associate with the
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288 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom).
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289 **/
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290
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291 DicomInstanceHasher modifiedHasher = modified->GetHasher();
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292
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293 if (originalHasher.HashSeries() != modifiedHasher.HashSeries())
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294 {
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295 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher.HashSeries());
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296 }
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297
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298 if (originalHasher.HashStudy() != modifiedHasher.HashStudy())
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299 {
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300 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher.HashStudy());
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301 }
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302
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303 if (originalHasher.HashPatient() != modifiedHasher.HashPatient())
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304 {
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305 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher.HashPatient());
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306 }
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307
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308 assert(*it == originalHasher.HashInstance());
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309 toStore.AddMetadata(ResourceType_Instance, metadataType, *it);
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310
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311
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312 /**
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313 * Store the resulting DICOM instance into the Orthanc store.
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314 **/
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315
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316 std::string modifiedInstance;
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317 if (context.Store(modifiedInstance, toStore) != StoreStatus_Success)
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318 {
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319 LOG(ERROR) << "Error while storing a modified instance " << *it;
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320 throw OrthancException(ErrorCode_CannotStoreInstance);
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321 }
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322
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323 // Sanity checks in debug mode
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324 assert(modifiedInstance == modifiedHasher.HashInstance());
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325
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326
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327 /**
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328 * Compute the JSON object that is returned by the REST call.
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329 **/
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330
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331 if (isFirst)
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332 {
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333 std::string newId;
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334
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335 switch (resourceType)
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336 {
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337 case ResourceType_Series:
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338 newId = modifiedHasher.HashSeries();
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339 break;
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340
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341 case ResourceType_Study:
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342 newId = modifiedHasher.HashStudy();
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343 break;
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344
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345 case ResourceType_Patient:
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346 newId = modifiedHasher.HashPatient();
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347 break;
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348
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349 default:
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350 throw OrthancException(ErrorCode_InternalError);
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351 }
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352
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353 result["Type"] = EnumerationToString(resourceType);
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354 result["ID"] = newId;
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355 result["Path"] = GetBasePath(resourceType, newId);
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356 result["PatientID"] = modifiedHasher.HashPatient();
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357 isFirst = false;
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358 }
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359 }
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360
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361 call.GetOutput().AnswerJson(result);
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362 }
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363
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364
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diff changeset
365
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366 static void ModifyInstance(RestApiPostCall& call)
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367 {
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368 DicomModification modification;
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369 modification.SetAllowManualIdentifiers(true);
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370
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371 if (ParseModifyRequest(modification, call))
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372 {
796
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diff changeset
373 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID))
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374 {
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375 modification.SetLevel(ResourceType_Patient);
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376 }
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377 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID))
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378 {
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379 modification.SetLevel(ResourceType_Study);
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380 }
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381 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID))
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382 {
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383 modification.SetLevel(ResourceType_Series);
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384 }
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385 else
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386 {
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387 modification.SetLevel(ResourceType_Instance);
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388 }
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389
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390 AnonymizeOrModifyInstance(modification, call);
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391 }
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392 }
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393
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diff changeset
394
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diff changeset
395 static void AnonymizeInstance(RestApiPostCall& call)
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396 {
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diff changeset
397 DicomModification modification;
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diff changeset
398 modification.SetAllowManualIdentifiers(true);
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399
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diff changeset
400 if (ParseAnonymizationRequest(modification, call))
751
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diff changeset
401 {
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diff changeset
402 AnonymizeOrModifyInstance(modification, call);
751
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403 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
404 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
405
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
406
787
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diff changeset
407 template <enum ChangeType changeType,
ac18946afa74 refactoring of anonymization/modification
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diff changeset
408 enum ResourceType resourceType>
974
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diff changeset
409 static void ModifyResource(RestApiPostCall& call)
751
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diff changeset
410 {
787
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diff changeset
411 DicomModification modification;
751
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parents:
diff changeset
412
787
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diff changeset
413 if (ParseModifyRequest(modification, call))
751
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diff changeset
414 {
796
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diff changeset
415 modification.SetLevel(resourceType);
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
416 AnonymizeOrModifyResource(modification, MetadataType_ModifiedFrom,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
417 changeType, resourceType, call);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
422 template <enum ChangeType changeType,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
423 enum ResourceType resourceType>
974
83622b0f544c refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
424 static void AnonymizeResource(RestApiPostCall& call)
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
425 {
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
426 DicomModification modification;
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
427
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
428 if (ParseAnonymizationRequest(modification, call))
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429 {
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
430 AnonymizeOrModifyResource(modification, MetadataType_AnonymizedFrom,
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
431 changeType, resourceType, call);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
432 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
433 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
434
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
435
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
436 static void StoreCreatedInstance(std::string& id /* out */,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
437 RestApiPostCall& call,
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
438 ParsedDicomFile& dicom)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
439 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
440 DicomInstanceToStore toStore;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
441 toStore.SetRestOrigin(call);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
442 toStore.SetParsedDicomFile(dicom);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
443
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
444 ServerContext& context = OrthancRestApi::GetContext(call);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
445 StoreStatus status = context.Store(id, toStore);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
446
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
447 if (status == StoreStatus_Failure)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
448 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
449 throw OrthancException(ErrorCode_CannotStoreInstance);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
450 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
451 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
452
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
453
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
454 static void CreateDicomV1(ParsedDicomFile& dicom,
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
455 RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
456 const Json::Value& request)
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
457 {
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
458 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}'
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 796
diff changeset
459 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}'
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
460
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
461 assert(request.isObject());
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
462 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom";
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
463
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
464 Json::Value::Members members = request.getMemberNames();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
465 for (size_t i = 0; i < members.size(); i++)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
466 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
467 const std::string& name = members[i];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
468 if (request[name].type() != Json::stringValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
469 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
470 throw OrthancException(ErrorCode_CreateDicomNotString);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
471 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
472
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
473 std::string value = request[name].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
474
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
475 DicomTag tag = FromDcmtkBridge::ParseTag(name);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
476 if (tag == DICOM_TAG_PIXEL_DATA)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
477 {
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1558
diff changeset
478 dicom.EmbedContent(value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
479 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
480 else
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
481 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
482 // This is V1, don't try and decode data URI scheme
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
483 dicom.ReplacePlainString(tag, value);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
484 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
485 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
486 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
487
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
488
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
489 static void InjectTags(ParsedDicomFile& dicom,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
490 const Json::Value& tags,
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
491 bool decodeBinaryTags)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
492 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
493 if (tags.type() != Json::objectValue)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
494 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
495 throw OrthancException(ErrorCode_BadRequest);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
496 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
497
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
498 // Inject the user-specified tags
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
499 Json::Value::Members members = tags.getMemberNames();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
500 for (size_t i = 0; i < members.size(); i++)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
501 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
502 const std::string& name = members[i];
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
503 DicomTag tag = FromDcmtkBridge::ParseTag(name);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
504
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
505 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
506 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
507 if (tag != DICOM_TAG_PATIENT_ID &&
1640
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
508 tag != DICOM_TAG_ACQUISITION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
509 tag != DICOM_TAG_ACQUISITION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
510 tag != DICOM_TAG_CONTENT_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
511 tag != DICOM_TAG_CONTENT_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
512 tag != DICOM_TAG_INSTANCE_CREATION_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
513 tag != DICOM_TAG_INSTANCE_CREATION_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
514 tag != DICOM_TAG_SERIES_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
515 tag != DICOM_TAG_SERIES_TIME &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
516 tag != DICOM_TAG_STUDY_DATE &&
48224db51ee7 allow override date/time when creating DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1616
diff changeset
517 tag != DICOM_TAG_STUDY_TIME &&
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
518 dicom.HasTag(tag))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
519 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
520 throw OrthancException(ErrorCode_CreateDicomOverrideTag);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
521 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
522
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
523 if (tag == DICOM_TAG_PIXEL_DATA)
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
524 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
525 throw OrthancException(ErrorCode_CreateDicomUseContent);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
526 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
527 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
528 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
529 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
530 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
531 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
532 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
533 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
534
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
535
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
536 static void CreateSeries(RestApiPostCall& call,
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
537 ParsedDicomFile& base /* in */,
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
538 const Json::Value& content,
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
539 bool decodeBinaryTags)
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
540 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
541 assert(content.isArray());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
542 assert(content.size() > 0);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
543 ServerContext& context = OrthancRestApi::GetContext(call);
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
544
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
545 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size()));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
546 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1");
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
547
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
548 std::string someInstance;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
549
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
550 try
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
551 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
552 for (Json::ArrayIndex i = 0; i < content.size(); i++)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
553 {
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
554 std::auto_ptr<ParsedDicomFile> dicom(base.Clone());
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
555 const Json::Value* payload = NULL;
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
556
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
557 if (content[i].type() == Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
558 {
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
559 payload = &content[i];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
560 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
561 else if (content[i].type() == Json::objectValue)
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
562 {
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
563 if (!content[i].isMember("Content"))
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
564 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
565 throw OrthancException(ErrorCode_CreateDicomNoPayload);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
566 }
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
567
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
568 payload = &content[i]["Content"];
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
569
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
570 if (content[i].isMember("Tags"))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
571 {
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
572 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
573 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
574 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
575
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
576 if (payload == NULL ||
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
577 payload->type() != Json::stringValue)
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
578 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
579 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
580 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
581
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
582 dicom->EmbedContent(payload->asString());
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
583 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1));
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
584 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1));
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
585
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
586 StoreCreatedInstance(someInstance, call, *dicom);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
587 }
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
588 }
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
589 catch (OrthancException&)
1566
3be6eb3757c8 error handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1565
diff changeset
590 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
591 // Error: Remove the newly-created series
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
592
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
593 std::string series;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
594 if (context.GetIndex().LookupParent(series, someInstance))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
595 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
596 Json::Value dummy;
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
597 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
598 }
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
599
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
600 throw;
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
601 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
602
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
603 std::string series;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
604 if (context.GetIndex().LookupParent(series, someInstance))
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
605 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
606 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
607 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
608 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
609
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
610
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
611 static void CreateDicomV2(RestApiPostCall& call,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
612 const Json::Value& request)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
613 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
614 assert(request.isObject());
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
615 ServerContext& context = OrthancRestApi::GetContext(call);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
616
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
617 if (!request.isMember("Tags") ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
618 request["Tags"].type() != Json::objectValue)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
619 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
620 throw OrthancException(ErrorCode_BadRequest);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
621 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
622
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
623 ParsedDicomFile dicom(true);
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
624
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
625 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
626 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
627
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
628 if (request["Tags"].isMember("SpecificCharacterSet"))
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
629 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
630 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString();
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
631 if (!GetDicomEncoding(encoding, tmp))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
632 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
633 LOG(ERROR) << "Unknown specific character set: " << std::string(tmp);
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
634 throw OrthancException(ErrorCode_ParameterOutOfRange);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
635 }
1558
124de28b32ed fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1557
diff changeset
636 }
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
637 else
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
638 {
1934
72a2fd7fed8b FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
639 encoding = Configuration::GetDefaultEncoding();
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
640 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
641
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
642 dicom.SetEncoding(encoding);
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
643 }
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
644
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
645 ResourceType parentType = ResourceType_Instance;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
646
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
647 if (request.isMember("Parent"))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
648 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
649 // Locate the parent tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
650 std::string parent = request["Parent"].asString();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
651 if (!context.GetIndex().LookupResourceType(parentType, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
652 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
653 throw OrthancException(ErrorCode_CreateDicomBadParent);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
654 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
655
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
656 if (parentType == ResourceType_Instance)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
657 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
658 throw OrthancException(ErrorCode_CreateDicomParentIsInstance);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
659 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
660
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
661 // Select one existing child instance of the parent resource, to
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
662 // retrieve all its tags
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
663 Json::Value siblingTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
664
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
665 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
666 // Retrieve all the instances of the parent resource
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
667 std::list<std::string> siblingInstances;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
668 context.GetIndex().GetChildInstances(siblingInstances, parent);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
669
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
670 if (siblingInstances.empty())
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
671 {
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
672 // Error: No instance (should never happen)
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
673 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
674 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
675
2124
2b1520efa282 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
676 context.ReadDicomAsJson(siblingTags, siblingInstances.front());
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
677 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
678
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
679
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
680 // Choose the same encoding as the parent resource
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
681 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
682 static const char* SPECIFIC_CHARACTER_SET = "0008,0005";
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
683
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
684 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
685 {
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
686 Encoding encoding;
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
687 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") ||
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
688 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue ||
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
689 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString()))
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
690 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
691 throw OrthancException(ErrorCode_CreateDicomParentEncoding);
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
692 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
693
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
694 dicom.SetEncoding(encoding);
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
695 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
696 }
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
697
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
698
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
699 // Retrieve the tags for all the parent modules
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
700 typedef std::set<DicomTag> ModuleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
701 ModuleTags moduleTags;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
702
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
703 ResourceType type = parentType;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
704 for (;;)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
705 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
706 DicomTag::AddTagsForModule(moduleTags, GetModule(type));
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
707
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
708 if (type == ResourceType_Patient)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
709 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
710 break; // We're done
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
711 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
712
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
713 // Go up
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
714 std::string tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
715 if (!context.GetIndex().LookupParent(tmp, parent))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
716 {
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
717 throw OrthancException(ErrorCode_InternalError);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
718 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
719
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
720 parent = tmp;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
721 type = GetParentResourceType(type);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
722 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
723
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
724 for (ModuleTags::const_iterator it = moduleTags.begin();
1616
644c32c07306 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
725 it != moduleTags.end(); ++it)
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
726 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
727 std::string t = it->Format();
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
728 if (siblingTags.isMember(t))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
729 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
730 const Json::Value& tag = siblingTags[t];
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
731 if (tag["Type"] == "Null")
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
732 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
733 dicom.ReplacePlainString(*it, "");
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
734 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
735 else if (tag["Type"] == "String")
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
736 {
1557
ad1e127b4ed5 fix in encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
737 std::string value = tag["Value"].asString();
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
738 dicom.ReplacePlainString(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding()));
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
739 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
740 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
741 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
742 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
743
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
744
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
745 bool decodeBinaryTags = true;
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
746 if (request.isMember("InterpretBinaryTags"))
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
747 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
748 const Json::Value& v = request["InterpretBinaryTags"];
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
749 if (v.type() != Json::booleanValue)
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
750 {
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
751 throw OrthancException(ErrorCode_BadRequest);
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
752 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
753
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
754 decodeBinaryTags = v.asBool();
1641
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
755 }
4e56b5a206b7 Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1640
diff changeset
756
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
757
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
758 // Inject time-related information
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
759 std::string date, time;
2140
aa4b8895cd23 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2124
diff changeset
760 SystemToolbox::GetNowDicom(date, time);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
761 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
762 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
763 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
764 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
765 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
766 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
767
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
768 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
769 parentType == ResourceType_Study ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
770 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
771 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
772 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
773 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
774 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
775
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
776 if (parentType == ResourceType_Patient ||
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
777 parentType == ResourceType_Instance /* no parent */)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
778 {
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
779 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1934
diff changeset
780 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
781 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
782
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
783
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
784 InjectTags(dicom, request["Tags"], decodeBinaryTags);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
785
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
786
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
787 // Inject the content (either an image, or a PDF file)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
788 if (request.isMember("Content"))
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
789 {
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
790 const Json::Value& content = request["Content"];
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
791
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
792 if (content.type() == Json::stringValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
793 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
794 dicom.EmbedContent(request["Content"].asString());
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
795
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
796 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
797 else if (content.type() == Json::arrayValue)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
798 {
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
799 if (content.size() > 0)
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
800 {
1565
4b23310eb7e8 add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1564
diff changeset
801 // Let's create a series instead of a single instance
1689
26083d84d237 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1652
diff changeset
802 CreateSeries(call, dicom, content, decodeBinaryTags);
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
803 return;
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
804 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
805 }
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
806 else
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
807 {
1582
bd1889029cbb encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1572
diff changeset
808 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
809 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
810 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
811
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
diff changeset
812 std::string id;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
813 StoreCreatedInstance(id, call, dicom);
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27774f6f84e4 improved error handling in http answers
jodogne
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814 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
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815
1564
1b7def486e62 creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1562
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816 return;
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d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
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817 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
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818
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
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819
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
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820 static void CreateDicom(RestApiPostCall& call)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
821 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
822 Json::Value request;
1569
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
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823 if (!call.ParseJsonRequest(request) ||
27774f6f84e4 improved error handling in http answers
jodogne
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diff changeset
824 !request.isObject())
1570
2bd2c280f9b5 fix indentation
jodogne
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825 {
2bd2c280f9b5 fix indentation
jodogne
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826 throw OrthancException(ErrorCode_BadRequest);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
827 }
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jodogne
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828
27774f6f84e4 improved error handling in http answers
jodogne
parents: 1566
diff changeset
829 if (request.isMember("Tags"))
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
830 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
831 CreateDicomV2(call, request);
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jodogne
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832 }
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833 else
1570
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jodogne
parents: 1569
diff changeset
834 {
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
835 // Compatibility with Orthanc <= 0.9.3
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1699
diff changeset
836 ParsedDicomFile dicom(true);
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
837 CreateDicomV1(dicom, call, request);
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jodogne
parents: 1566
diff changeset
838
1570
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jodogne
parents: 1569
diff changeset
839 std::string id;
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1570
diff changeset
840 StoreCreatedInstance(id, call, dicom);
1570
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
841 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success);
2bd2c280f9b5 fix indentation
jodogne
parents: 1569
diff changeset
842 }
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
843 }
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
844
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
845
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
846 void OrthancRestApi::RegisterAnonymizeModify()
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
847 {
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
848 Register("/instances/{id}/modify", ModifyInstance);
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
849 Register("/series/{id}/modify", ModifyResource<ChangeType_ModifiedSeries, ResourceType_Series>);
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
850 Register("/studies/{id}/modify", ModifyResource<ChangeType_ModifiedStudy, ResourceType_Study>);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
851 Register("/patients/{id}/modify", ModifyResource<ChangeType_ModifiedPatient, ResourceType_Patient>);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
852
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
853 Register("/instances/{id}/anonymize", AnonymizeInstance);
787
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
854 Register("/series/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedSeries, ResourceType_Series>);
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
855 Register("/studies/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedStudy, ResourceType_Study>);
ac18946afa74 refactoring of anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
856 Register("/patients/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedPatient, ResourceType_Patient>);
796
e7b1ca0f1e04 creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
857
1120
009dce4ea2f6 /tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1010
diff changeset
858 Register("/tools/create-dicom", CreateDicom);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
859 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
860 }