Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 3020:d207f6ac1f86 db-changes
tracking disk size by the database engine to ensure consistency across transactions
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sat, 15 Dec 2018 10:57:18 +0100 |
parents | 8336204d95dc |
children | 039a9d262d64 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
2122 | 53 #include "Search/LookupResource.h" |
0 | 54 |
55 #include <boost/lexical_cast.hpp> | |
56 #include <stdio.h> | |
57 | |
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58 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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59 |
62 | 60 namespace Orthanc |
0 | 61 { |
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62 class ServerIndex::Listener : public IDatabaseListener |
0 | 63 { |
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64 private: |
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65 struct FileToRemove |
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66 { |
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67 private: |
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68 std::string uuid_; |
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69 FileContentType type_; |
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70 |
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71 public: |
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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73 type_(info.GetContentType()) |
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74 { |
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75 } |
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76 |
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77 const std::string& GetUuid() const |
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78 { |
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79 return uuid_; |
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80 } |
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81 |
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82 FileContentType GetContentType() const |
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83 { |
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84 return type_; |
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85 } |
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86 }; |
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87 |
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88 ServerContext& context_; |
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89 bool hasRemainingLevel_; |
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90 ResourceType remainingType_; |
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91 std::string remainingPublicId_; |
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92 std::list<FileToRemove> pendingFilesToRemove_; |
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93 std::list<ServerIndexChange> pendingChanges_; |
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94 uint64_t sizeOfFilesToRemove_; |
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95 bool insideTransaction_; |
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96 |
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97 void Reset() |
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98 { |
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99 sizeOfFilesToRemove_ = 0; |
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100 hasRemainingLevel_ = false; |
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101 pendingFilesToRemove_.clear(); |
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102 pendingChanges_.clear(); |
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103 } |
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104 |
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105 public: |
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106 Listener(ServerContext& context) : context_(context), |
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107 insideTransaction_(false) |
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108 { |
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109 Reset(); |
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110 assert(ResourceType_Patient < ResourceType_Study && |
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111 ResourceType_Study < ResourceType_Series && |
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112 ResourceType_Series < ResourceType_Instance); |
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113 } |
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114 |
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115 void StartTransaction() |
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116 { |
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117 Reset(); |
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118 insideTransaction_ = true; |
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119 } |
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120 |
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121 void EndTransaction() |
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122 { |
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123 insideTransaction_ = false; |
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124 } |
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125 |
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126 uint64_t GetSizeOfFilesToRemove() |
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127 { |
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128 return sizeOfFilesToRemove_; |
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129 } |
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130 |
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131 void CommitFilesToRemove() |
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132 { |
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133 for (std::list<FileToRemove>::const_iterator |
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134 it = pendingFilesToRemove_.begin(); |
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135 it != pendingFilesToRemove_.end(); ++it) |
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136 { |
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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138 } |
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139 } |
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141 void CommitChanges() |
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142 { |
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143 for (std::list<ServerIndexChange>::const_iterator |
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144 it = pendingChanges_.begin(); |
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145 it != pendingChanges_.end(); ++it) |
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146 { |
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147 context_.SignalChange(*it); |
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148 } |
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149 } |
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150 |
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151 virtual void SignalRemainingAncestor(ResourceType parentType, |
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152 const std::string& publicId) |
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153 { |
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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155 |
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156 if (hasRemainingLevel_) |
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157 { |
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158 if (parentType < remainingType_) |
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159 { |
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160 remainingType_ = parentType; |
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161 remainingPublicId_ = publicId; |
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162 } |
1158 | 163 } |
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164 else |
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165 { |
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166 hasRemainingLevel_ = true; |
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167 remainingType_ = parentType; |
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168 remainingPublicId_ = publicId; |
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169 } |
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170 } |
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171 |
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172 virtual void SignalFileDeleted(const FileInfo& info) |
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173 { |
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174 assert(Toolbox::IsUuid(info.GetUuid())); |
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175 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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176 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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177 } |
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178 |
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179 virtual void SignalChange(const ServerIndexChange& change) |
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180 { |
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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182 << EnumerationToString(change.GetResourceType()) << ": " |
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183 << EnumerationToString(change.GetChangeType()); |
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184 |
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185 if (insideTransaction_) |
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186 { |
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187 pendingChanges_.push_back(change); |
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188 } |
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189 else |
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190 { |
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191 context_.SignalChange(change); |
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192 } |
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193 } |
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194 |
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195 bool HasRemainingLevel() const |
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196 { |
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197 return hasRemainingLevel_; |
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198 } |
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199 |
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200 ResourceType GetRemainingType() const |
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201 { |
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202 assert(HasRemainingLevel()); |
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203 return remainingType_; |
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204 } |
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205 |
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206 const std::string& GetRemainingPublicId() const |
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207 { |
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208 assert(HasRemainingLevel()); |
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209 return remainingPublicId_; |
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210 } |
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211 }; |
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213 | |
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214 class ServerIndex::Transaction |
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215 { |
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216 private: |
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217 ServerIndex& index_; |
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218 std::auto_ptr<IDatabaseWrapper::ITransaction> transaction_; |
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219 bool isCommitted_; |
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220 |
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221 public: |
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222 Transaction(ServerIndex& index) : |
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223 index_(index), |
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224 isCommitted_(false) |
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225 { |
1247 | 226 transaction_.reset(index_.db_.StartTransaction()); |
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227 transaction_->Begin(); |
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228 |
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229 index_.listener_->StartTransaction(); |
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230 } |
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231 |
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232 ~Transaction() |
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233 { |
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234 index_.listener_->EndTransaction(); |
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235 |
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236 if (!isCommitted_) |
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237 { |
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238 transaction_->Rollback(); |
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239 } |
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240 } |
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241 |
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242 void Commit(uint64_t sizeOfAddedFiles) |
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243 { |
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244 if (!isCommitted_) |
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245 { |
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246 int64_t delta = (static_cast<int64_t>(sizeOfAddedFiles) - |
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247 static_cast<int64_t>(index_.listener_->GetSizeOfFilesToRemove())); |
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248 |
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249 transaction_->Commit(delta); |
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250 |
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251 // We can remove the files once the SQLite transaction has |
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252 // been successfully committed. Some files might have to be |
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253 // deleted because of recycling. |
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254 index_.listener_->CommitFilesToRemove(); |
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255 |
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256 // Send all the pending changes to the Orthanc plugins |
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257 index_.listener_->CommitChanges(); |
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258 |
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259 isCommitted_ = true; |
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260 } |
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261 } |
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262 }; |
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263 |
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264 |
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265 class ServerIndex::UnstableResourcePayload |
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266 { |
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267 private: |
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268 ResourceType type_; |
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269 std::string publicId_; |
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270 boost::posix_time::ptime time_; |
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271 |
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272 public: |
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273 UnstableResourcePayload() : type_(ResourceType_Instance) |
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274 { |
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275 } |
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276 |
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277 UnstableResourcePayload(Orthanc::ResourceType type, |
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278 const std::string& publicId) : |
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279 type_(type), |
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280 publicId_(publicId) |
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281 { |
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282 time_ = boost::posix_time::second_clock::local_time(); |
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283 } |
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284 |
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285 unsigned int GetAge() const |
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286 { |
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287 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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288 } |
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289 |
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290 ResourceType GetResourceType() const |
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291 { |
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292 return type_; |
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293 } |
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294 |
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295 const std::string& GetPublicId() const |
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296 { |
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297 return publicId_; |
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298 } |
511
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299 }; |
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300 |
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301 |
212 | 302 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 303 const std::string& uuid, |
202 | 304 ResourceType expectedType) |
0 | 305 { |
206
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306 boost::mutex::scoped_lock lock(mutex_); |
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307 |
278
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308 Transaction t(*this); |
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309 |
202 | 310 int64_t id; |
311 ResourceType type; | |
1294 | 312 if (!db_.LookupResource(id, type, uuid) || |
202 | 313 expectedType != type) |
0 | 314 { |
315 return false; | |
316 } | |
202 | 317 |
1247 | 318 db_.DeleteResource(id); |
0 | 319 |
202 | 320 if (listener_->HasRemainingLevel()) |
0 | 321 { |
202 | 322 ResourceType type = listener_->GetRemainingType(); |
323 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 324 |
325 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 326 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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327 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 328 target["RemainingAncestor"]["ID"] = uuid; |
329 } | |
330 else | |
331 { | |
332 target["RemainingAncestor"] = Json::nullValue; | |
333 } | |
334 | |
278
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335 t.Commit(0); |
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336 |
0 | 337 return true; |
338 } | |
339 | |
340 | |
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341 void ServerIndex::FlushThread(ServerIndex* that, |
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342 unsigned int threadSleep) |
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343 { |
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344 // By default, wait for 10 seconds before flushing |
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345 unsigned int sleep = 10; |
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346 |
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347 try |
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348 { |
744 | 349 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 350 std::string sleepString; |
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351 |
1247 | 352 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 353 Toolbox::IsInteger(sleepString)) |
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354 { |
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355 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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356 } |
511
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357 } |
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358 catch (boost::bad_lexical_cast&) |
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359 { |
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360 } |
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361 |
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362 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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363 |
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364 unsigned int count = 0; |
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365 |
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366 while (!that->done_) |
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367 { |
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368 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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369 count++; |
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370 if (count < sleep) |
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371 { |
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372 continue; |
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373 } |
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374 |
2217 | 375 Logging::Flush(); |
376 | |
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377 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 378 that->db_.FlushToDisk(); |
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379 count = 0; |
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380 } |
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381 |
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382 LOG(INFO) << "Stopping the database flushing thread"; |
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383 } |
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384 |
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385 |
1247 | 386 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 387 int64_t series, |
388 const DicomMap& dicomSummary) | |
389 { | |
390 try | |
391 { | |
656 | 392 const DicomValue* value; |
393 const DicomValue* value2; | |
394 | |
433 | 395 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
396 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
397 { | |
398 // Patch for series with temporal positions thanks to Will Ryder | |
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399 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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400 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 401 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
402 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
403 } | |
404 | |
405 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
406 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
407 { | |
408 // Support of Cardio-PET images | |
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409 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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410 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 411 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
412 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
413 } | |
414 | |
415 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
416 { | |
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417 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 418 } |
419 } | |
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420 catch (OrthancException&) |
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421 { |
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422 } |
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423 catch (boost::bad_lexical_cast&) |
433 | 424 { |
425 } | |
426 } | |
427 | |
428 | |
1237 | 429 |
430 | |
1238 | 431 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 432 int64_t id, |
433 MetadataType type) | |
434 { | |
1238 | 435 std::string s; |
1247 | 436 if (!db_.LookupMetadata(s, id, type)) |
1237 | 437 { |
438 return false; | |
439 } | |
440 | |
441 try | |
442 { | |
1238 | 443 result = boost::lexical_cast<int64_t>(s); |
1237 | 444 return true; |
445 } | |
446 catch (boost::bad_lexical_cast&) | |
447 { | |
448 return false; | |
449 } | |
450 } | |
451 | |
452 | |
1297 | 453 void ServerIndex::LogChange(int64_t internalId, |
454 ChangeType changeType, | |
455 ResourceType resourceType, | |
456 const std::string& publicId) | |
457 { | |
458 ServerIndexChange change(changeType, resourceType, publicId); | |
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459 |
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460 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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461 { |
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462 db_.LogChange(internalId, change); |
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463 } |
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464 |
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465 assert(listener_.get() != NULL); |
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466 listener_->SignalChange(change); |
1297 | 467 } |
468 | |
1237 | 469 |
470 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
471 { | |
472 std::string oldValue; | |
473 | |
1247 | 474 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 475 { |
476 uint64_t oldNumber; | |
477 | |
478 try | |
479 { | |
480 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 481 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 482 return oldNumber + 1; |
483 } | |
484 catch (boost::bad_lexical_cast&) | |
485 { | |
486 throw OrthancException(ErrorCode_InternalError); | |
487 } | |
488 } | |
489 else | |
490 { | |
491 // Initialize the sequence at "1" | |
1247 | 492 db_.SetGlobalProperty(property, "1"); |
1237 | 493 return 1; |
494 } | |
495 } | |
496 | |
497 | |
498 | |
1299 | 499 int64_t ServerIndex::CreateResource(const std::string& publicId, |
500 ResourceType type) | |
501 { | |
502 int64_t id = db_.CreateResource(publicId, type); | |
503 | |
504 ChangeType changeType; | |
505 switch (type) | |
506 { | |
507 case ResourceType_Patient: | |
508 changeType = ChangeType_NewPatient; | |
509 break; | |
510 | |
511 case ResourceType_Study: | |
512 changeType = ChangeType_NewStudy; | |
513 break; | |
514 | |
515 case ResourceType_Series: | |
516 changeType = ChangeType_NewSeries; | |
517 break; | |
518 | |
519 case ResourceType_Instance: | |
520 changeType = ChangeType_NewInstance; | |
521 break; | |
522 | |
523 default: | |
524 throw OrthancException(ErrorCode_InternalError); | |
525 } | |
526 | |
527 ServerIndexChange change(changeType, type, publicId); | |
528 db_.LogChange(id, change); | |
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529 |
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530 assert(listener_.get() != NULL); |
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531 listener_->SignalChange(change); |
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532 |
1299 | 533 return id; |
534 } | |
535 | |
1286 | 536 |
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537 ServerIndex::ServerIndex(ServerContext& context, |
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538 IDatabaseWrapper& db, |
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539 unsigned int threadSleep) : |
511
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540 done_(false), |
1247 | 541 db_(db), |
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542 maximumStorageSize_(0), |
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543 maximumPatients_(0), |
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544 overwrite_(false) |
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545 { |
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546 listener_.reset(new Listener(context)); |
1247 | 547 db_.SetListener(*listener_); |
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548 |
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549 // Initial recycling if the parameters have changed since the last |
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550 // execution of Orthanc |
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551 StandaloneRecycling(); |
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552 |
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553 if (db.HasFlushToDisk()) |
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554 { |
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555 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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556 } |
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557 |
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558 unstableResourcesMonitorThread_ = boost::thread |
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559 (UnstableResourcesMonitorThread, this, threadSleep); |
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560 } |
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561 |
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562 |
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563 |
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564 ServerIndex::~ServerIndex() |
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565 { |
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566 if (!done_) |
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567 { |
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568 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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569 Stop(); |
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570 } |
0 | 571 } |
572 | |
573 | |
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574 |
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575 void ServerIndex::Stop() |
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576 { |
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577 if (!done_) |
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578 { |
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579 done_ = true; |
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580 |
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581 if (db_.HasFlushToDisk() && |
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582 flushThread_.joinable()) |
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583 { |
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584 flushThread_.join(); |
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585 } |
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586 |
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587 if (unstableResourcesMonitorThread_.joinable()) |
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588 { |
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589 unstableResourcesMonitorThread_.join(); |
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590 } |
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591 } |
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592 } |
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593 |
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594 |
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595 |
2188 | 596 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
597 int64_t instance, | |
598 MetadataType metadata, | |
599 const std::string& value) | |
600 { | |
601 db_.SetMetadata(instance, metadata, value); | |
602 instanceMetadata[metadata] = value; | |
603 } | |
604 | |
605 | |
606 | |
1006
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607 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 608 DicomInstanceToStore& instanceToStore, |
609 const Attachments& attachments) | |
0 | 610 { |
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611 boost::mutex::scoped_lock lock(mutex_); |
0 | 612 |
1822 | 613 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
614 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
615 | |
1006
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616 instanceMetadata.clear(); |
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617 |
0 | 618 try |
619 { | |
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620 Transaction t(*this); |
0 | 621 |
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622 // Check whether this instance is already stored |
0 | 623 { |
432 | 624 ResourceType type; |
625 int64_t tmp; | |
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626 if (db_.LookupResource(tmp, type, instanceToStore.GetHasher().HashInstance())) |
432 | 627 { |
628 assert(type == ResourceType_Instance); | |
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629 |
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630 if (overwrite_) |
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631 { |
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632 // Overwrite the old instance |
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633 LOG(INFO) << "Overwriting instance: " << instanceToStore.GetHasher().HashInstance(); |
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634 db_.DeleteResource(tmp); |
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635 } |
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636 else |
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637 { |
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638 // Do nothing if the instance already exists |
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639 db_.GetAllMetadata(instanceMetadata, tmp); |
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640 return StoreStatus_AlreadyStored; |
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641 } |
432 | 642 } |
0 | 643 } |
644 | |
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645 // Ensure there is enough room in the storage for the new instance |
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646 uint64_t instanceSize = 0; |
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647 for (Attachments::const_iterator it = attachments.begin(); |
656 | 648 it != attachments.end(); ++it) |
268
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649 { |
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650 instanceSize += it->GetCompressedSize(); |
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651 } |
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652 |
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653 Recycle(instanceSize, instanceToStore.GetHasher().HashPatient()); |
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654 |
202 | 655 // Create the instance |
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656 int64_t instance = CreateResource(instanceToStore.GetHasher().HashInstance(), ResourceType_Instance); |
2120 | 657 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 658 |
432 | 659 // Detect up to which level the patient/study/series/instance |
660 // hierarchy must be created | |
661 int64_t patient = -1, study = -1, series = -1; | |
662 bool isNewPatient = false; | |
663 bool isNewStudy = false; | |
664 bool isNewSeries = false; | |
665 | |
0 | 666 { |
432 | 667 ResourceType dummy; |
668 | |
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669 if (db_.LookupResource(series, dummy, instanceToStore.GetHasher().HashSeries())) |
432 | 670 { |
671 assert(dummy == ResourceType_Series); | |
672 // The patient, the study and the series already exist | |
673 | |
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674 bool ok = (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()) && |
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675 db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())); |
432 | 676 assert(ok); |
677 } | |
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678 else if (db_.LookupResource(study, dummy, instanceToStore.GetHasher().HashStudy())) |
432 | 679 { |
680 assert(dummy == ResourceType_Study); | |
681 | |
682 // New series: The patient and the study already exist | |
683 isNewSeries = true; | |
684 | |
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685 bool ok = db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient()); |
432 | 686 assert(ok); |
687 } | |
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688 else if (db_.LookupResource(patient, dummy, instanceToStore.GetHasher().HashPatient())) |
432 | 689 { |
690 assert(dummy == ResourceType_Patient); | |
691 | |
692 // New study and series: The patient already exist | |
693 isNewStudy = true; | |
694 isNewSeries = true; | |
695 } | |
696 else | |
697 { | |
698 // New patient, study and series: Nothing exists | |
699 isNewPatient = true; | |
700 isNewStudy = true; | |
701 isNewSeries = true; | |
702 } | |
703 } | |
704 | |
705 // Create the series if needed | |
706 if (isNewSeries) | |
707 { | |
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708 series = CreateResource(instanceToStore.GetHasher().HashSeries(), ResourceType_Series); |
2120 | 709 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 710 } |
202 | 711 |
432 | 712 // Create the study if needed |
713 if (isNewStudy) | |
714 { | |
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715 study = CreateResource(instanceToStore.GetHasher().HashStudy(), ResourceType_Study); |
2120 | 716 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 717 } |
718 | |
719 // Create the patient if needed | |
720 if (isNewPatient) | |
721 { | |
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|
722 patient = CreateResource(instanceToStore.GetHasher().HashPatient(), ResourceType_Patient); |
2120 | 723 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 724 } |
202 | 725 |
432 | 726 // Create the parent-to-child links |
1247 | 727 db_.AttachChild(series, instance); |
432 | 728 |
729 if (isNewSeries) | |
730 { | |
1247 | 731 db_.AttachChild(study, series); |
0 | 732 } |
432 | 733 |
734 if (isNewStudy) | |
0 | 735 { |
1247 | 736 db_.AttachChild(patient, study); |
0 | 737 } |
738 | |
432 | 739 // Sanity checks |
740 assert(patient != -1); | |
741 assert(study != -1); | |
742 assert(series != -1); | |
743 assert(instance != -1); | |
744 | |
202 | 745 // Attach the files to the newly created instance |
232
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diff
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|
746 for (Attachments::const_iterator it = attachments.begin(); |
656 | 747 it != attachments.end(); ++it) |
232
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diff
changeset
|
748 { |
1247 | 749 db_.AddAttachment(instance, *it); |
232
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parents:
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|
750 } |
202 | 751 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
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831
diff
changeset
|
752 // Attach the user-specified metadata |
1006
649d47854314
proper handling of metadata in Store
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parents:
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diff
changeset
|
753 for (MetadataMap::const_iterator |
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proper handling of metadata in Store
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parents:
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diff
changeset
|
754 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
755 { |
1006
649d47854314
proper handling of metadata in Store
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parents:
1004
diff
changeset
|
756 switch (it->first.first) |
1002
b067017a8a5b
anonymization refactoring
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diff
changeset
|
757 { |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
758 case ResourceType_Patient: |
1247 | 759 db_.SetMetadata(patient, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
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parents:
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diff
changeset
|
760 break; |
1002
b067017a8a5b
anonymization refactoring
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parents:
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diff
changeset
|
761 |
1006
649d47854314
proper handling of metadata in Store
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diff
changeset
|
762 case ResourceType_Study: |
1247 | 763 db_.SetMetadata(study, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
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parents:
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diff
changeset
|
764 break; |
1002
b067017a8a5b
anonymization refactoring
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parents:
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diff
changeset
|
765 |
1006
649d47854314
proper handling of metadata in Store
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diff
changeset
|
766 case ResourceType_Series: |
1247 | 767 db_.SetMetadata(series, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
768 break; |
1002
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anonymization refactoring
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diff
changeset
|
769 |
1006
649d47854314
proper handling of metadata in Store
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1004
diff
changeset
|
770 case ResourceType_Instance: |
2188 | 771 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
772 break; |
1002
b067017a8a5b
anonymization refactoring
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diff
changeset
|
773 |
1006
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
774 default: |
649d47854314
proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1004
diff
changeset
|
775 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
776 } |
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parents:
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diff
changeset
|
777 } |
b067017a8a5b
anonymization refactoring
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parents:
831
diff
changeset
|
778 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
779 // Attach the auto-computed metadata for the patient/study/series levels |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
780 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
1247 | 781 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
782 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
783 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
784 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
785 // Attach the auto-computed metadata for the instance level, |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
786 // reflecting these additions into the input metadata map |
2188 | 787 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
2640
c691fcf66071
ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
788 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, |
2664
a21b244efb37
serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2640
diff
changeset
|
789 instanceToStore.GetOrigin().GetRemoteAetC()); |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
790 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
2640
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ResourceModificationJob
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parents:
2573
diff
changeset
|
791 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
2726
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
792 |
1823
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parents:
1822
diff
changeset
|
793 { |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
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diff
changeset
|
794 std::string s; |
2726
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
795 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
2188
diff
changeset
|
796 if (instanceToStore.LookupTransferSyntax(s)) |
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
797 { |
2726
46061a91c88a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
798 // New in Orthanc 1.2.0 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2188
diff
changeset
|
799 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
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diff
changeset
|
800 } |
2726
46061a91c88a
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diff
changeset
|
801 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
802 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
803 { |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
804 // New in Orthanc 1.4.0 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
805 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteIp, s); |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
806 } |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
807 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2717
diff
changeset
|
808 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
809 { |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
810 // New in Orthanc 1.4.0 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
811 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_CalledAet, s); |
46061a91c88a
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diff
changeset
|
812 } |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
813 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2717
diff
changeset
|
814 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
815 { |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
816 // New in Orthanc 1.4.0 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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2717
diff
changeset
|
817 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_HttpUsername, s); |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
818 } |
1823
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"Origin" metadata for the instances
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diff
changeset
|
819 } |
0ef4e6e66b56
"Origin" metadata for the instances
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parents:
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diff
changeset
|
820 |
202 | 821 const DicomValue* value; |
2208
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
822 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
823 !value->IsNull() && |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
824 !value->IsBinary()) |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
825 { |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
826 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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changeset
|
827 } |
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
828 |
202 | 829 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
830 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 831 { |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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diff
changeset
|
832 if (!value->IsNull() && |
ec66a16aa398
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parents:
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diff
changeset
|
833 !value->IsBinary()) |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
834 { |
2188 | 835 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
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diff
changeset
|
836 } |
0 | 837 } |
838 | |
1004
a226e0959d8b
DicomInstanceToStore
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parents:
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diff
changeset
|
839 // Check whether the series of this new instance is now completed |
202 | 840 if (isNewSeries) |
841 { | |
1247 | 842 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 843 } |
844 | |
205
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diff
changeset
|
845 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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diff
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|
846 if (seriesStatus == SeriesStatus_Complete) |
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logging of completed series
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diff
changeset
|
847 { |
2898
e5e3253a1164
DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
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2826
diff
changeset
|
848 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
205
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logging of completed series
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diff
changeset
|
849 } |
6ab754744446
logging of completed series
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diff
changeset
|
850 |
511
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
851 // Mark the parent resources of this instance as unstable |
2898
e5e3253a1164
DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2826
diff
changeset
|
852 MarkAsUnstable(series, ResourceType_Series, instanceToStore.GetHasher().HashSeries()); |
e5e3253a1164
DicomInstanceToStore::GetHasher()
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parents:
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diff
changeset
|
853 MarkAsUnstable(study, ResourceType_Study, instanceToStore.GetHasher().HashStudy()); |
e5e3253a1164
DicomInstanceToStore::GetHasher()
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parents:
2826
diff
changeset
|
854 MarkAsUnstable(patient, ResourceType_Patient, instanceToStore.GetHasher().HashPatient()); |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
855 |
278
771f12042be9
more efficient determination of storage size for recycling
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parents:
273
diff
changeset
|
856 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
857 |
0 | 858 return StoreStatus_Success; |
859 } | |
62 | 860 catch (OrthancException& e) |
0 | 861 { |
1247 | 862 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 863 } |
864 | |
865 return StoreStatus_Failure; | |
866 } | |
867 | |
868 | |
238 | 869 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 870 { |
206
4453a010d0db
flush to disk thread
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parents:
205
diff
changeset
|
871 boost::mutex::scoped_lock lock(mutex_); |
238 | 872 target = Json::objectValue; |
0 | 873 |
3020
d207f6ac1f86
tracking disk size by the database engine to ensure consistency across transactions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3019
diff
changeset
|
874 uint64_t cs = db_.GetTotalCompressedSize(); |
1247 | 875 uint64_t us = db_.GetTotalUncompressedSize(); |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
876 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 877 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
61ce8147f30d
custom database back-end
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parents:
1306
diff
changeset
|
878 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
61ce8147f30d
custom database back-end
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diff
changeset
|
879 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 880 |
1247 | 881 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
882 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
883 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
884 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 885 } |
886 | |
187
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887 |
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888 |
585 | 889 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 890 { |
891 // Get the expected number of instances in this series (from the metadata) | |
1238 | 892 int64_t expected; |
893 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 894 { |
895 return SeriesStatus_Unknown; | |
896 } | |
897 | |
898 // Loop over the instances of this series | |
899 std::list<int64_t> children; | |
1247 | 900 db_.GetChildrenInternalId(children, id); |
199 | 901 |
1238 | 902 std::set<int64_t> instances; |
199 | 903 for (std::list<int64_t>::const_iterator |
656 | 904 it = children.begin(); it != children.end(); ++it) |
199 | 905 { |
906 // Get the index of this instance in the series | |
1238 | 907 int64_t index; |
908 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 909 { |
910 return SeriesStatus_Unknown; | |
911 } | |
912 | |
656 | 913 if (!(index > 0 && index <= expected)) |
199 | 914 { |
915 // Out-of-range instance index | |
916 return SeriesStatus_Inconsistent; | |
917 } | |
918 | |
919 if (instances.find(index) != instances.end()) | |
920 { | |
921 // Twice the same instance index | |
922 return SeriesStatus_Inconsistent; | |
923 } | |
924 | |
925 instances.insert(index); | |
926 } | |
927 | |
1238 | 928 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 929 { |
930 return SeriesStatus_Complete; | |
931 } | |
932 else | |
933 { | |
934 return SeriesStatus_Missing; | |
935 } | |
936 } | |
937 | |
938 | |
202 | 939 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
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940 int64_t resourceId, |
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941 ResourceType resourceType) |
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942 { |
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943 DicomMap tags; |
1247 | 944 db_.GetMainDicomTags(tags, resourceId); |
1676
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945 |
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946 if (resourceType == ResourceType_Study) |
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947 { |
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948 DicomMap t1, t2; |
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949 tags.ExtractStudyInformation(t1); |
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950 tags.ExtractPatientInformation(t2); |
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951 |
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952 target["MainDicomTags"] = Json::objectValue; |
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953 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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954 |
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955 target["PatientMainDicomTags"] = Json::objectValue; |
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956 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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957 } |
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958 else |
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959 { |
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960 target["MainDicomTags"] = Json::objectValue; |
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961 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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962 } |
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963 } |
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964 |
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965 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 966 const std::string& publicId, |
967 ResourceType expectedType) | |
198
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968 { |
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969 result = Json::objectValue; |
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970 |
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971 boost::mutex::scoped_lock lock(mutex_); |
199 | 972 |
198
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973 // Lookup for the requested resource |
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974 int64_t id; |
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975 ResourceType type; |
1294 | 976 if (!db_.LookupResource(id, type, publicId) || |
199 | 977 type != expectedType) |
198
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978 { |
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979 return false; |
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980 } |
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981 |
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982 // Find the parent resource (if it exists) |
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983 if (type != ResourceType_Patient) |
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984 { |
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985 int64_t parentId; |
1247 | 986 if (!db_.LookupParent(parentId, id)) |
198
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987 { |
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988 throw OrthancException(ErrorCode_InternalError); |
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989 } |
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990 |
1247 | 991 std::string parent = db_.GetPublicId(parentId); |
198
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992 |
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993 switch (type) |
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994 { |
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995 case ResourceType_Study: |
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996 result["ParentPatient"] = parent; |
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997 break; |
198
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998 |
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999 case ResourceType_Series: |
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1000 result["ParentStudy"] = parent; |
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1001 break; |
198
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1002 |
269
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1003 case ResourceType_Instance: |
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1004 result["ParentSeries"] = parent; |
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1005 break; |
198
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1006 |
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1007 default: |
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1008 throw OrthancException(ErrorCode_InternalError); |
198
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1009 } |
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1010 } |
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1011 |
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1012 // List the children resources |
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1013 std::list<std::string> children; |
1247 | 1014 db_.GetChildrenPublicId(children, id); |
198
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1015 |
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1016 if (type != ResourceType_Instance) |
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1017 { |
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1018 Json::Value c = Json::arrayValue; |
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1019 |
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1020 for (std::list<std::string>::const_iterator |
656 | 1021 it = children.begin(); it != children.end(); ++it) |
198
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1022 { |
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1023 c.append(*it); |
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1024 } |
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1025 |
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1026 switch (type) |
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1027 { |
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1028 case ResourceType_Patient: |
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1029 result["Studies"] = c; |
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1030 break; |
198
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1031 |
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1032 case ResourceType_Study: |
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1033 result["Series"] = c; |
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1034 break; |
198
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1035 |
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1036 case ResourceType_Series: |
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1037 result["Instances"] = c; |
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1038 break; |
198
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1039 |
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1040 default: |
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1041 throw OrthancException(ErrorCode_InternalError); |
198
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1042 } |
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1043 } |
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1044 |
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1045 // Set the resource type |
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1046 switch (type) |
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1047 { |
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1048 case ResourceType_Patient: |
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1049 result["Type"] = "Patient"; |
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1050 break; |
198
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1051 |
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1052 case ResourceType_Study: |
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|
1053 result["Type"] = "Study"; |
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diff
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|
1054 break; |
199 | 1055 |
269
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diff
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|
1056 case ResourceType_Series: |
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diff
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|
1057 { |
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diff
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1058 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
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433
diff
changeset
|
1059 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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diff
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|
1060 |
1238 | 1061 int64_t i; |
1237 | 1062 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1063 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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1064 else |
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diff
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|
1065 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
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diff
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|
1066 |
269
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diff
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|
1067 break; |
200
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diff
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|
1068 } |
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diff
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|
1069 |
269
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|
1070 case ResourceType_Instance: |
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|
1071 { |
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|
1072 result["Type"] = "Instance"; |
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|
1073 |
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diff
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|
1074 FileInfo attachment; |
1247 | 1075 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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|
1076 { |
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|
1077 throw OrthancException(ErrorCode_InternalError); |
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diff
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|
1078 } |
200
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diff
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|
1079 |
269
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|
1080 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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diff
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|
1081 result["FileUuid"] = attachment.GetUuid(); |
200
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199
diff
changeset
|
1082 |
1238 | 1083 int64_t i; |
1237 | 1084 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1085 result["IndexInSeries"] = static_cast<int>(i); |
269
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diff
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|
1086 else |
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diff
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|
1087 result["IndexInSeries"] = Json::nullValue; |
198
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diff
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|
1088 |
269
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diff
changeset
|
1089 break; |
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diff
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|
1090 } |
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diff
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|
1091 |
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diff
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|
1092 default: |
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diff
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|
1093 throw OrthancException(ErrorCode_InternalError); |
198
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|
1094 } |
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diff
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|
1095 |
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diff
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|
1096 // Record the remaining information |
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197
diff
changeset
|
1097 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1098 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
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|
1099 |
315 | 1100 std::string tmp; |
1101 | |
1247 | 1102 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1103 { |
315 | 1104 result["AnonymizedFrom"] = tmp; |
1236 | 1105 } |
315 | 1106 |
1247 | 1107 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1108 { |
315 | 1109 result["ModifiedFrom"] = tmp; |
1236 | 1110 } |
315 | 1111 |
511
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440
diff
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|
1112 if (type == ResourceType_Patient || |
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440
diff
changeset
|
1113 type == ResourceType_Study || |
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diff
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|
1114 type == ResourceType_Series) |
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diff
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|
1115 { |
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monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
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440
diff
changeset
|
1116 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1117 |
1247 | 1118 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1119 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
changeset
|
1120 result["LastUpdate"] = tmp; |
1236 | 1121 } |
511
3b735fdf320b
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diff
changeset
|
1122 } |
3b735fdf320b
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diff
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|
1123 |
198
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|
1124 return true; |
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1125 } |
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1126 |
0 | 1127 |
232
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231
diff
changeset
|
1128 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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diff
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|
1129 const std::string& instanceUuid, |
233 | 1130 FileContentType contentType) |
0 | 1131 { |
206
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flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
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205
diff
changeset
|
1132 boost::mutex::scoped_lock lock(mutex_); |
0 | 1133 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
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192
diff
changeset
|
1134 int64_t id; |
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192
diff
changeset
|
1135 ResourceType type; |
1294 | 1136 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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diff
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|
1137 { |
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
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1102
diff
changeset
|
1138 throw OrthancException(ErrorCode_UnknownResource); |
192
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191
diff
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|
1139 } |
193
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1140 |
1247 | 1141 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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diff
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|
1142 { |
233 | 1143 assert(attachment.GetContentType() == contentType); |
232
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diff
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|
1144 return true; |
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231
diff
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|
1145 } |
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diff
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|
1146 else |
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231
diff
changeset
|
1147 { |
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diff
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|
1148 return false; |
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diff
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|
1149 } |
192
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|
1150 } |
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diff
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|
1151 |
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|
1152 |
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191
diff
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|
1153 |
1354 | 1154 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1155 ResourceType resourceType) |
0 | 1156 { |
1357 | 1157 boost::mutex::scoped_lock lock(mutex_); |
1158 db_.GetAllPublicIds(target, resourceType); | |
0 | 1159 } |
1160 | |
1161 | |
1509
0586ed8897f1
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diff
changeset
|
1162 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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changeset
|
1163 ResourceType resourceType, |
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diff
changeset
|
1164 size_t since, |
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|
1165 size_t limit) |
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|
1166 { |
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|
1167 if (limit == 0) |
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1168 { |
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|
1169 target.clear(); |
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|
1170 return; |
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|
1171 } |
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changeset
|
1172 |
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diff
changeset
|
1173 boost::mutex::scoped_lock lock(mutex_); |
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|
1174 db_.GetAllPublicIds(target, resourceType, since, limit); |
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|
1175 } |
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1176 |
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|
1177 |
1244 | 1178 template <typename T> |
1179 static void FormatLog(Json::Value& target, | |
1180 const std::list<T>& log, | |
1181 const std::string& name, | |
1182 bool done, | |
1183 int64_t since) | |
1240 | 1184 { |
1185 Json::Value items = Json::arrayValue; | |
1244 | 1186 for (typename std::list<T>::const_iterator |
1304 | 1187 it = log.begin(); it != log.end(); ++it) |
1240 | 1188 { |
1189 Json::Value item; | |
1190 it->Format(item); | |
1191 items.append(item); | |
1192 } | |
1193 | |
1194 target = Json::objectValue; | |
1244 | 1195 target[name] = items; |
1240 | 1196 target["Done"] = done; |
1197 | |
1305 | 1198 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1199 target["Last"] = static_cast<int>(last); |
1200 } | |
1201 | |
1202 | |
1247 | 1203 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1204 int64_t since, |
0 | 1205 unsigned int maxResults) |
1206 { | |
1240 | 1207 std::list<ServerIndexChange> changes; |
1208 bool done; | |
1209 | |
1210 { | |
1211 boost::mutex::scoped_lock lock(mutex_); | |
2717
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changeset
|
1212 |
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|
1213 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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|
1214 // "GetLastChange()" involves calls to "GetPublicId()" |
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changeset
|
1215 Transaction transaction(*this); |
1247 | 1216 db_.GetChanges(changes, done, since, maxResults); |
2717
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|
1217 transaction.Commit(0); |
1240 | 1218 } |
1219 | |
1244 | 1220 FormatLog(target, changes, "Changes", done, since); |
237
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diff
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|
1221 } |
0 | 1222 |
1240 | 1223 |
1247 | 1224 void ServerIndex::GetLastChange(Json::Value& target) |
237
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diff
changeset
|
1225 { |
1240 | 1226 std::list<ServerIndexChange> changes; |
1227 | |
1228 { | |
1229 boost::mutex::scoped_lock lock(mutex_); | |
2717
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|
1230 |
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1231 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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|
1232 // "GetLastChange()" involves calls to "GetPublicId()" |
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changeset
|
1233 Transaction transaction(*this); |
1247 | 1234 db_.GetLastChange(changes); |
2717
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changeset
|
1235 transaction.Commit(0); |
1240 | 1236 } |
1237 | |
1244 | 1238 FormatLog(target, changes, "Changes", true, 0); |
0 | 1239 } |
231 | 1240 |
1240 | 1241 |
231 | 1242 void ServerIndex::LogExportedResource(const std::string& publicId, |
1243 const std::string& remoteModality) | |
1244 { | |
1245 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1306
diff
changeset
|
1246 Transaction transaction(*this); |
231 | 1247 |
1248 int64_t id; | |
1249 ResourceType type; | |
1294 | 1250 if (!db_.LookupResource(id, type, publicId)) |
231 | 1251 { |
2573
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1252 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1253 } |
1254 | |
1255 std::string patientId; | |
1256 std::string studyInstanceUid; | |
1257 std::string seriesInstanceUid; | |
1258 std::string sopInstanceUid; | |
1259 | |
1260 int64_t currentId = id; | |
1261 ResourceType currentType = type; | |
1262 | |
1263 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1264 bool done = false; | |
1265 while (!done) | |
1266 { | |
1267 DicomMap map; | |
1247 | 1268 db_.GetMainDicomTags(map, currentId); |
231 | 1269 |
1270 switch (currentType) | |
1271 { | |
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1272 case ResourceType_Patient: |
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1273 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1274 { |
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1275 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1276 } |
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1277 done = true; |
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1278 break; |
231 | 1279 |
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1280 case ResourceType_Study: |
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1281 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1282 { |
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1283 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1284 } |
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1285 currentType = ResourceType_Patient; |
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1286 break; |
231 | 1287 |
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1288 case ResourceType_Series: |
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1289 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1290 { |
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1291 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1292 } |
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1293 currentType = ResourceType_Study; |
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1294 break; |
231 | 1295 |
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1296 case ResourceType_Instance: |
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1297 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1298 { |
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1299 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1300 } |
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1301 currentType = ResourceType_Series; |
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1302 break; |
231 | 1303 |
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1304 default: |
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1305 throw OrthancException(ErrorCode_InternalError); |
231 | 1306 } |
1307 | |
1308 // If we have not reached the Patient level, find the parent of | |
1309 // the current resource | |
1310 if (!done) | |
1311 { | |
1247 | 1312 bool ok = db_.LookupParent(currentId, currentId); |
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1313 assert(ok); |
231 | 1314 } |
1315 } | |
1316 | |
1246 | 1317 ExportedResource resource(-1, |
1318 type, | |
1319 publicId, | |
1320 remoteModality, | |
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|
1321 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1322 patientId, |
1323 studyInstanceUid, | |
1324 seriesInstanceUid, | |
1325 sopInstanceUid); | |
1310
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1326 |
1247 | 1327 db_.LogExportedResource(resource); |
1310
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|
1328 transaction.Commit(0); |
231 | 1329 } |
1330 | |
1331 | |
1247 | 1332 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1333 int64_t since, |
1334 unsigned int maxResults) | |
1335 { | |
1244 | 1336 std::list<ExportedResource> exported; |
1337 bool done; | |
1338 | |
1339 { | |
1340 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1341 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1342 } |
1343 | |
1344 FormatLog(target, exported, "Exports", done, since); | |
231 | 1345 } |
237
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1346 |
1244 | 1347 |
1247 | 1348 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1349 { |
1244 | 1350 std::list<ExportedResource> exported; |
1351 | |
1352 { | |
1353 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1354 db_.GetLastExportedResource(exported); |
1244 | 1355 } |
1356 | |
1357 FormatLog(target, exported, "Exports", true, 0); | |
237
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1358 } |
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1359 |
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1360 |
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1361 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1362 { |
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1363 if (maximumStorageSize_ != 0) |
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1364 { |
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diff
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|
1365 assert(maximumStorageSize_ >= instanceSize); |
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1366 |
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1367 if (db_.IsDiskSizeAbove(maximumStorageSize_ - instanceSize)) |
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1368 { |
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1369 return true; |
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1370 } |
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1371 } |
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1372 |
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1373 if (maximumPatients_ != 0) |
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1374 { |
1247 | 1375 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1376 if (patientCount > maximumPatients_) |
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1377 { |
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1378 return true; |
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1379 } |
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1380 } |
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1381 |
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1382 return false; |
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1383 } |
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1384 |
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1385 |
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1386 void ServerIndex::Recycle(uint64_t instanceSize, |
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1387 const std::string& newPatientId) |
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1388 { |
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1389 if (!IsRecyclingNeeded(instanceSize)) |
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1390 { |
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1391 return; |
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1392 } |
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1393 |
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1394 // Check whether other DICOM instances from this patient are |
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1395 // already stored |
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1396 int64_t patientToAvoid; |
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1397 ResourceType type; |
1294 | 1398 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1399 |
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1400 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1401 { |
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1402 throw OrthancException(ErrorCode_InternalError); |
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1403 } |
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1404 |
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1405 // Iteratively select patient to remove until there is enough |
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1406 // space in the DICOM store |
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1407 int64_t patientToRecycle; |
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1408 while (true) |
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1409 { |
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1410 // If other instances of this patient are already in the store, |
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1411 // we must avoid to recycle them |
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1412 bool ok = hasPatientToAvoid ? |
1247 | 1413 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1414 db_.SelectPatientToRecycle(patientToRecycle); | |
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1415 |
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1416 if (!ok) |
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1417 { |
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1418 throw OrthancException(ErrorCode_FullStorage); |
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1419 } |
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1420 |
1331
77e129ba64e4
Prevent freeze on C-FIND if no DICOM tag is to be returned
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|
1421 VLOG(1) << "Recycling one patient"; |
1247 | 1422 db_.DeleteResource(patientToRecycle); |
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1423 |
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1424 if (!IsRecyclingNeeded(instanceSize)) |
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1425 { |
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1426 // OK, we're done |
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1427 break; |
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1428 } |
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1429 } |
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1430 } |
269
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1431 |
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1432 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1433 { |
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1434 boost::mutex::scoped_lock lock(mutex_); |
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1435 maximumPatients_ = count; |
270
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1436 |
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1437 if (count == 0) |
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|
1438 { |
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1439 LOG(WARNING) << "No limit on the number of stored patients"; |
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1440 } |
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1441 else |
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1442 { |
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1443 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1444 } |
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1445 |
269
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1446 StandaloneRecycling(); |
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1447 } |
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1448 |
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1449 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1450 { |
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1451 boost::mutex::scoped_lock lock(mutex_); |
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|
1452 maximumStorageSize_ = size; |
270
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1453 |
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1454 if (size == 0) |
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|
1455 { |
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1456 LOG(WARNING) << "No limit on the size of the storage area"; |
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|
1457 } |
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|
1458 else |
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diff
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|
1459 { |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
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438
diff
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|
1460 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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|
1461 } |
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|
1462 |
269
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|
1463 StandaloneRecycling(); |
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1464 } |
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1465 |
2825
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diff
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|
1466 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
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|
1467 { |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
changeset
|
1468 boost::mutex::scoped_lock lock(mutex_); |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
changeset
|
1469 overwrite_ = overwrite; |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
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|
1470 } |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
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2726
diff
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|
1471 |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
1472 |
272
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|
1473 void ServerIndex::StandaloneRecycling() |
269
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|
1474 { |
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1475 // WARNING: No mutex here, do not include this as a public method |
278
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|
1476 Transaction t(*this); |
269
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|
1477 Recycle(0, ""); |
278
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|
1478 t.Commit(0); |
269
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1479 } |
272
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|
1480 |
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diff
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|
1481 |
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|
1482 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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|
1483 { |
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|
1484 boost::mutex::scoped_lock lock(mutex_); |
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|
1485 |
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1486 // Lookup for the requested resource |
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|
1487 int64_t id; |
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|
1488 ResourceType type; |
1294 | 1489 if (!db_.LookupResource(id, type, publicId) || |
272
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|
1490 type != ResourceType_Patient) |
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diff
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|
1491 { |
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|
1492 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
1493 } |
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1494 |
1247 | 1495 return db_.IsProtectedPatient(id); |
272
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|
1496 } |
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diff
changeset
|
1497 |
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diff
changeset
|
1498 |
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diff
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|
1499 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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|
1500 bool isProtected) |
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|
1501 { |
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|
1502 boost::mutex::scoped_lock lock(mutex_); |
1310
61ce8147f30d
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diff
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|
1503 Transaction transaction(*this); |
272
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1504 |
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1505 // Lookup for the requested resource |
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|
1506 int64_t id; |
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diff
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|
1507 ResourceType type; |
1294 | 1508 if (!db_.LookupResource(id, type, publicId) || |
272
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|
1509 type != ResourceType_Patient) |
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diff
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|
1510 { |
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|
1511 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1512 } |
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|
1513 |
1247 | 1514 db_.SetProtectedPatient(id, isProtected); |
1310
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|
1515 transaction.Commit(0); |
272
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|
1516 |
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|
1517 if (isProtected) |
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1518 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1519 else |
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1520 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1521 } |
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1522 |
304 | 1523 |
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|
1524 void ServerIndex::GetChildren(std::list<std::string>& result, |
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changeset
|
1525 const std::string& publicId) |
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|
1526 { |
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|
1527 result.clear(); |
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|
1528 |
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changeset
|
1529 boost::mutex::scoped_lock lock(mutex_); |
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|
1530 |
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changeset
|
1531 ResourceType type; |
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changeset
|
1532 int64_t resource; |
1294 | 1533 if (!db_.LookupResource(resource, type, publicId)) |
714
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|
1534 { |
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|
1535 throw OrthancException(ErrorCode_UnknownResource); |
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|
1536 } |
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changeset
|
1537 |
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changeset
|
1538 if (type == ResourceType_Instance) |
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|
1539 { |
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changeset
|
1540 // An instance cannot have a child |
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changeset
|
1541 throw OrthancException(ErrorCode_BadParameterType); |
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|
1542 } |
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changeset
|
1543 |
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changeset
|
1544 std::list<int64_t> tmp; |
1247 | 1545 db_.GetChildrenInternalId(tmp, resource); |
714
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|
1546 |
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|
1547 for (std::list<int64_t>::const_iterator |
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changeset
|
1548 it = tmp.begin(); it != tmp.end(); ++it) |
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changeset
|
1549 { |
1247 | 1550 result.push_back(db_.GetPublicId(*it)); |
714
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|
1551 } |
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|
1552 } |
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diff
changeset
|
1553 |
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|
1554 |
304 | 1555 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1556 const std::string& publicId) | |
1557 { | |
1558 result.clear(); | |
1559 | |
1560 boost::mutex::scoped_lock lock(mutex_); | |
1561 | |
1562 ResourceType type; | |
1563 int64_t top; | |
1294 | 1564 if (!db_.LookupResource(top, type, publicId)) |
304 | 1565 { |
1566 throw OrthancException(ErrorCode_UnknownResource); | |
1567 } | |
1568 | |
1569 if (type == ResourceType_Instance) | |
1570 { | |
1571 // The resource is already an instance: Do not go down the hierarchy | |
1572 result.push_back(publicId); | |
1573 return; | |
1574 } | |
1575 | |
1576 std::stack<int64_t> toExplore; | |
1577 toExplore.push(top); | |
1578 | |
1579 std::list<int64_t> tmp; | |
1580 | |
1581 while (!toExplore.empty()) | |
1582 { | |
1583 // Get the internal ID of the current resource | |
1584 int64_t resource = toExplore.top(); | |
1585 toExplore.pop(); | |
1586 | |
1247 | 1587 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1588 { |
1247 | 1589 result.push_back(db_.GetPublicId(resource)); |
304 | 1590 } |
1591 else | |
1592 { | |
1593 // Tag all the children of this resource as to be explored | |
1247 | 1594 db_.GetChildrenInternalId(tmp, resource); |
304 | 1595 for (std::list<int64_t>::const_iterator |
656 | 1596 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1597 { |
1598 toExplore.push(*it); | |
1599 } | |
1600 } | |
1601 } | |
1602 } | |
1603 | |
306
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1604 |
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1605 void ServerIndex::SetMetadata(const std::string& publicId, |
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1606 MetadataType type, |
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1607 const std::string& value) |
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1608 { |
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1609 boost::mutex::scoped_lock lock(mutex_); |
1773
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1610 Transaction t(*this); |
306
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1611 |
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1612 ResourceType rtype; |
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1613 int64_t id; |
1294 | 1614 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1615 { |
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1616 throw OrthancException(ErrorCode_UnknownResource); |
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1617 } |
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1618 |
1247 | 1619 db_.SetMetadata(id, type, value); |
1773
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1620 |
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1621 if (IsUserMetadata(type)) |
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1622 { |
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1623 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1624 } |
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1625 |
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1626 t.Commit(0); |
306
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1627 } |
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1628 |
438 | 1629 |
1630 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1631 MetadataType type) | |
1632 { | |
1633 boost::mutex::scoped_lock lock(mutex_); | |
1773
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1634 Transaction t(*this); |
438 | 1635 |
1636 ResourceType rtype; | |
1637 int64_t id; | |
1294 | 1638 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1639 { |
1640 throw OrthancException(ErrorCode_UnknownResource); | |
1641 } | |
1642 | |
1247 | 1643 db_.DeleteMetadata(id, type); |
1773
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1644 |
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1645 if (IsUserMetadata(type)) |
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1646 { |
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1647 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1648 } |
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1649 |
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1650 t.Commit(0); |
438 | 1651 } |
1652 | |
1653 | |
306
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1654 bool ServerIndex::LookupMetadata(std::string& target, |
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1655 const std::string& publicId, |
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1656 MetadataType type) |
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1657 { |
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1658 boost::mutex::scoped_lock lock(mutex_); |
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1659 |
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1660 ResourceType rtype; |
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1661 int64_t id; |
1294 | 1662 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1663 { |
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1664 throw OrthancException(ErrorCode_UnknownResource); |
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1665 } |
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1666 |
1247 | 1667 return db_.LookupMetadata(target, id, type); |
306
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1668 } |
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1669 |
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1670 |
739 | 1671 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1672 const std::string& publicId) |
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1673 { |
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1674 boost::mutex::scoped_lock lock(mutex_); |
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1675 |
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|
1676 ResourceType rtype; |
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|
1677 int64_t id; |
1294 | 1678 if (!db_.LookupResource(id, rtype, publicId)) |
436
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|
1679 { |
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|
1680 throw OrthancException(ErrorCode_UnknownResource); |
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|
1681 } |
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|
1682 |
1247 | 1683 db_.ListAvailableMetadata(target, id); |
436
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|
1684 } |
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|
1685 |
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|
1686 |
697
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|
1687 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1688 const std::string& publicId, |
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|
1689 ResourceType expectedType) |
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diff
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|
1690 { |
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diff
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|
1691 boost::mutex::scoped_lock lock(mutex_); |
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|
1692 |
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diff
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|
1693 ResourceType type; |
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diff
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|
1694 int64_t id; |
1294 | 1695 if (!db_.LookupResource(id, type, publicId) || |
697
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|
1696 expectedType != type) |
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|
1697 { |
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|
1698 throw OrthancException(ErrorCode_UnknownResource); |
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|
1699 } |
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|
1700 |
1247 | 1701 db_.ListAvailableAttachments(target, id); |
697
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|
1702 } |
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1703 |
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1704 |
306
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1705 bool ServerIndex::LookupParent(std::string& target, |
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1706 const std::string& publicId) |
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1707 { |
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1708 boost::mutex::scoped_lock lock(mutex_); |
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1709 |
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1710 ResourceType type; |
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1711 int64_t id; |
1294 | 1712 if (!db_.LookupResource(id, type, publicId)) |
306
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1713 { |
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1714 throw OrthancException(ErrorCode_UnknownResource); |
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1715 } |
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1716 |
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1717 int64_t parentId; |
1247 | 1718 if (db_.LookupParent(parentId, id)) |
306
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1719 { |
1247 | 1720 target = db_.GetPublicId(parentId); |
306
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1721 return true; |
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1722 } |
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1723 else |
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1724 { |
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1725 return false; |
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1726 } |
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1727 } |
310 | 1728 |
1729 | |
1730 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1731 { | |
1732 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1733 Transaction transaction(*this); |
311 | 1734 |
1237 | 1735 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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1736 transaction.Commit(0); |
311 | 1737 |
1738 return seq; | |
310 | 1739 } |
315 | 1740 |
1741 | |
1742 | |
1743 void ServerIndex::LogChange(ChangeType changeType, | |
1744 const std::string& publicId) | |
1745 { | |
1746 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1747 Transaction transaction(*this); |
315 | 1748 |
1749 int64_t id; | |
1750 ResourceType type; | |
1294 | 1751 if (!db_.LookupResource(id, type, publicId)) |
315 | 1752 { |
1753 throw OrthancException(ErrorCode_UnknownResource); | |
1754 } | |
1755 | |
1237 | 1756 LogChange(id, changeType, type, publicId); |
1310
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|
1757 transaction.Commit(0); |
315 | 1758 } |
413
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|
1759 |
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changeset
|
1760 |
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|
1761 void ServerIndex::DeleteChanges() |
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1762 { |
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|
1763 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1764 db_.ClearChanges(); |
413
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diff
changeset
|
1765 } |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1766 |
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diff
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|
1767 void ServerIndex::DeleteExportedResources() |
47d63c941902
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diff
changeset
|
1768 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1769 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1770 db_.ClearExportedResources(); |
413
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clearing /exports and /changes
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diff
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|
1771 } |
440
23e5b35e3c5c
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diff
changeset
|
1772 |
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diff
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|
1773 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1774 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& diskSize, |
646 | 1775 /* out */ uint64_t& uncompressedSize, |
1776 /* out */ unsigned int& countStudies, | |
1777 /* out */ unsigned int& countSeries, | |
1778 /* out */ unsigned int& countInstances, | |
2987
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1779 /* out */ uint64_t& dicomDiskSize, |
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New "DicomDiskSize" and "DicomUncompressedSize" fields in statistics about resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1780 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1781 /* in */ int64_t id, |
1782 /* in */ ResourceType type) | |
440
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diff
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|
1783 { |
646 | 1784 std::stack<int64_t> toExplore; |
1785 toExplore.push(id); | |
440
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diff
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|
1786 |
646 | 1787 countInstances = 0; |
1788 countSeries = 0; | |
1789 countStudies = 0; | |
2987
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1790 diskSize = 0; |
646 | 1791 uncompressedSize = 0; |
2987
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1792 dicomDiskSize = 0; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1793 dicomUncompressedSize = 0; |
440
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1794 |
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diff
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|
1795 while (!toExplore.empty()) |
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diff
changeset
|
1796 { |
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diff
changeset
|
1797 // Get the internal ID of the current resource |
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diff
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|
1798 int64_t resource = toExplore.top(); |
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diff
changeset
|
1799 toExplore.pop(); |
23e5b35e3c5c
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diff
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|
1800 |
1247 | 1801 ResourceType thisType = db_.GetResourceType(resource); |
440
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diff
changeset
|
1802 |
702
7592a48e97e4
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diff
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|
1803 std::list<FileContentType> f; |
1247 | 1804 db_.ListAvailableAttachments(f, resource); |
702
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|
1805 |
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|
1806 for (std::list<FileContentType>::const_iterator |
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|
1807 it = f.begin(); it != f.end(); ++it) |
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diff
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|
1808 { |
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diff
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|
1809 FileInfo attachment; |
1247 | 1810 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1811 { |
2987
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diff
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|
1812 if (attachment.GetContentType() == FileContentType_Dicom) |
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1813 { |
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diff
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|
1814 dicomDiskSize += attachment.GetCompressedSize(); |
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1815 dicomUncompressedSize += attachment.GetUncompressedSize(); |
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diff
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|
1816 } |
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1817 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1818 diskSize += attachment.GetCompressedSize(); |
702
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diff
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|
1819 uncompressedSize += attachment.GetUncompressedSize(); |
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diff
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|
1820 } |
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|
1821 } |
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diff
changeset
|
1822 |
440
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diff
changeset
|
1823 if (thisType == ResourceType_Instance) |
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diff
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|
1824 { |
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diff
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|
1825 countInstances++; |
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diff
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|
1826 } |
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diff
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|
1827 else |
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diff
changeset
|
1828 { |
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diff
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|
1829 switch (thisType) |
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diff
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|
1830 { |
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diff
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|
1831 case ResourceType_Study: |
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diff
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1832 countStudies++; |
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diff
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|
1833 break; |
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diff
changeset
|
1834 |
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diff
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|
1835 case ResourceType_Series: |
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diff
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1836 countSeries++; |
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diff
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|
1837 break; |
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diff
changeset
|
1838 |
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diff
changeset
|
1839 default: |
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diff
changeset
|
1840 break; |
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diff
changeset
|
1841 } |
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diff
changeset
|
1842 |
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diff
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1843 // Tag all the children of this resource as to be explored |
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diff
changeset
|
1844 std::list<int64_t> tmp; |
1247 | 1845 db_.GetChildrenInternalId(tmp, resource); |
440
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diff
changeset
|
1846 for (std::list<int64_t>::const_iterator |
656 | 1847 it = tmp.begin(); it != tmp.end(); ++it) |
440
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diff
changeset
|
1848 { |
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diff
changeset
|
1849 toExplore.push(*it); |
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diff
changeset
|
1850 } |
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diff
changeset
|
1851 } |
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diff
changeset
|
1852 } |
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diff
changeset
|
1853 |
646 | 1854 if (countStudies == 0) |
1855 { | |
1856 countStudies = 1; | |
1857 } | |
1858 | |
1859 if (countSeries == 0) | |
1860 { | |
1861 countSeries = 1; | |
1862 } | |
1863 } | |
1864 | |
1865 | |
1866 | |
1867 void ServerIndex::GetStatistics(Json::Value& target, | |
1868 const std::string& publicId) | |
1869 { | |
1870 boost::mutex::scoped_lock lock(mutex_); | |
1871 | |
1872 ResourceType type; | |
1873 int64_t top; | |
1294 | 1874 if (!db_.LookupResource(top, type, publicId)) |
646 | 1875 { |
1876 throw OrthancException(ErrorCode_UnknownResource); | |
1877 } | |
1878 | |
1879 uint64_t uncompressedSize; | |
2987
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1880 uint64_t diskSize; |
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|
1881 uint64_t dicomUncompressedSize; |
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changeset
|
1882 uint64_t dicomDiskSize; |
646 | 1883 unsigned int countStudies; |
1884 unsigned int countSeries; | |
1885 unsigned int countInstances; | |
2987
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changeset
|
1886 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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changeset
|
1887 countSeries, countInstances, dicomDiskSize, dicomUncompressedSize, top, type); |
646 | 1888 |
440
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diff
changeset
|
1889 target = Json::objectValue; |
2987
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changeset
|
1890 target["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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changeset
|
1891 target["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
440
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diff
changeset
|
1892 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
61ce8147f30d
custom database back-end
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1306
diff
changeset
|
1893 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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diff
changeset
|
1894 |
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|
1895 target["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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changeset
|
1896 target["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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changeset
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1897 target["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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changeset
|
1898 target["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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changeset
|
1899 |
440
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diff
changeset
|
1900 switch (type) |
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diff
changeset
|
1901 { |
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diff
changeset
|
1902 // Do NOT add "break" below this point! |
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diff
changeset
|
1903 case ResourceType_Patient: |
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diff
changeset
|
1904 target["CountStudies"] = countStudies; |
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diff
changeset
|
1905 |
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diff
changeset
|
1906 case ResourceType_Study: |
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diff
changeset
|
1907 target["CountSeries"] = countSeries; |
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diff
changeset
|
1908 |
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diff
changeset
|
1909 case ResourceType_Series: |
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1910 target["CountInstances"] = countInstances; |
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1911 |
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1912 case ResourceType_Instance: |
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1913 default: |
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1914 break; |
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1915 } |
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1916 } |
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1917 |
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1918 |
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1919 void ServerIndex::GetStatistics(/* out */ uint64_t& diskSize, |
646 | 1920 /* out */ uint64_t& uncompressedSize, |
1921 /* out */ unsigned int& countStudies, | |
1922 /* out */ unsigned int& countSeries, | |
1923 /* out */ unsigned int& countInstances, | |
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1924 /* out */ uint64_t& dicomDiskSize, |
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1925 /* out */ uint64_t& dicomUncompressedSize, |
646 | 1926 const std::string& publicId) |
1927 { | |
1928 boost::mutex::scoped_lock lock(mutex_); | |
1929 | |
1930 ResourceType type; | |
1931 int64_t top; | |
1294 | 1932 if (!db_.LookupResource(top, type, publicId)) |
646 | 1933 { |
1934 throw OrthancException(ErrorCode_UnknownResource); | |
1935 } | |
1936 | |
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1937 GetStatisticsInternal(diskSize, uncompressedSize, countStudies, |
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1938 countSeries, countInstances, dicomDiskSize, |
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1939 dicomUncompressedSize, top, type); |
646 | 1940 } |
1941 | |
1942 | |
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1943 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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1944 unsigned int threadSleep) |
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1945 { |
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1946 int stableAge; |
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1947 |
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1948 { |
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1949 OrthancConfiguration::ReaderLock lock; |
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1950 stableAge = lock.GetConfiguration().GetUnsignedIntegerParameter("StableAge", 60); |
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1951 } |
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1952 |
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1953 if (stableAge <= 0) |
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1954 { |
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1955 stableAge = 60; |
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1956 } |
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1957 |
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1958 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1959 |
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1960 while (!that->done_) |
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1961 { |
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1962 // Check for stable resources each few seconds |
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1963 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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1964 |
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1965 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1966 |
511
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1967 while (!that->unstableResources_.IsEmpty() && |
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1968 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1969 { |
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1970 // This DICOM resource has not received any new instance for |
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1971 // some time. It can be considered as stable. |
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1972 |
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1973 UnstableResourcePayload payload; |
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1974 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1975 |
513 | 1976 // Ensure that the resource is still existing before logging the change |
1247 | 1977 if (that->db_.IsExistingResource(id)) |
511
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1978 { |
1177
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1979 switch (payload.GetResourceType()) |
513 | 1980 { |
1177
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1981 case ResourceType_Patient: |
1237 | 1982 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1983 break; |
511
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1984 |
1177
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1985 case ResourceType_Study: |
1237 | 1986 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1987 break; |
511
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1988 |
1177
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1989 case ResourceType_Series: |
1237 | 1990 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1991 break; |
1992 | |
1993 default: | |
1994 throw OrthancException(ErrorCode_InternalError); | |
1995 } | |
1996 | |
1997 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1998 } |
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1999 } |
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2000 } |
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2001 |
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2002 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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2003 } |
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2004 |
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2005 |
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2006 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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2007 Orthanc::ResourceType type, |
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2008 const std::string& publicId) |
511
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2009 { |
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2010 // WARNING: Before calling this method, "mutex_" must be locked. |
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2011 |
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2012 assert(type == Orthanc::ResourceType_Patient || |
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2013 type == Orthanc::ResourceType_Study || |
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2014 type == Orthanc::ResourceType_Series); |
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2015 |
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2016 UnstableResourcePayload payload(type, publicId); |
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2017 unstableResources_.AddOrMakeMostRecent(id, payload); |
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2018 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
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2019 |
1237 | 2020 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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2021 } |
521 | 2022 |
2023 | |
2024 | |
1728
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2025 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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2026 ResourceType level, |
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2027 const DicomTag& tag, |
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2028 const std::string& value) |
615 | 2029 { |
1727 | 2030 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2031 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2032 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2033 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2034 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2035 |
615 | 2036 result.clear(); |
2037 | |
2038 boost::mutex::scoped_lock lock(mutex_); | |
2039 | |
1746 | 2040 LookupIdentifierQuery query(level); |
2041 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
2042 query.Apply(result, db_); | |
615 | 2043 } |
2044 | |
2045 | |
699
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2046 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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2047 const std::string& publicId) |
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2048 { |
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2049 boost::mutex::scoped_lock lock(mutex_); |
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2050 |
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2051 Transaction t(*this); |
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2052 |
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2053 ResourceType resourceType; |
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2054 int64_t resourceId; |
1294 | 2055 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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2056 { |
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2057 return StoreStatus_Failure; // Inexistent resource |
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2058 } |
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2059 |
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2060 // Remove possible previous attachment |
1247 | 2061 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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2062 |
704
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2063 // Locate the patient of the target resource |
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2064 int64_t patientId = resourceId; |
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2065 for (;;) |
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2066 { |
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2067 int64_t parent; |
1247 | 2068 if (db_.LookupParent(parent, patientId)) |
704
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2069 { |
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parents:
702
diff
changeset
|
2070 // We have not reached the patient level yet |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2071 patientId = parent; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2072 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2073 else |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2074 { |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2075 // We have reached the patient level |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2076 break; |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2077 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2078 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2079 |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2080 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2081 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2082 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2083 |
1247 | 2084 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2085 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2086 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2087 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2088 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2089 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2090 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2091 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2092 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2093 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2094 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2095 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2096 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2097 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2098 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2099 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2100 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2101 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2102 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2103 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2104 int64_t id; |
1294 | 2105 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2106 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2107 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2108 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2109 |
1247 | 2110 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2111 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2112 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2113 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2114 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2115 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2116 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2117 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2118 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2119 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2120 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2121 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2122 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2123 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2124 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2125 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2126 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2127 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2128 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2129 int64_t id; |
1294 | 2130 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2131 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2132 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2133 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2134 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2135 std::list<MetadataType> metadata; |
1247 | 2136 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2137 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2138 for (std::list<MetadataType>::const_iterator |
1304 | 2139 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2140 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2141 std::string key = EnumerationToString(*it); |
1238 | 2142 |
2143 std::string value; | |
1247 | 2144 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2145 { |
2146 value.clear(); | |
2147 } | |
2148 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2149 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2150 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2151 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2152 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2153 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2154 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2155 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2156 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2157 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2158 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2159 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2160 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2161 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2162 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2163 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2164 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2165 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2166 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2167 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2168 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2169 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2170 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2171 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2172 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2173 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2174 { |
1239 | 2175 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2176 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2177 if (LookupGlobalProperty(value, property)) |
1239 | 2178 { |
2179 return value; | |
2180 } | |
2181 else | |
2182 { | |
2183 return defaultValue; | |
2184 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2185 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2186 |
1352 | 2187 |
2188 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2189 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2190 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2191 ResourceType levelOfInterest) |
1352 | 2192 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2193 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2194 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2195 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2196 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2197 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2198 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2199 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2200 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2201 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2202 |
1352 | 2203 result.Clear(); |
2204 | |
2205 boost::mutex::scoped_lock lock(mutex_); | |
2206 | |
2207 // Lookup for the requested resource | |
2208 int64_t id; | |
2209 ResourceType type; | |
2210 if (!db_.LookupResource(id, type, publicId) || | |
2211 type != expectedType) | |
2212 { | |
2213 return false; | |
2214 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2215 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2216 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2217 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2218 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2219 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2220 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2221 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2222 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2223 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2224 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2225 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2226 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2227 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2228 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2229 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2230 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2231 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2232 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2233 } |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2234 } |
1352 | 2235 else |
2236 { | |
2237 db_.GetMainDicomTags(result, id); | |
2238 return true; | |
2239 } | |
2240 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2241 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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1509
diff
changeset
|
2242 |
3006
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2243 bool ServerIndex::GetAllMainDicomTags(DicomMap& result, |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2244 const std::string& instancePublicId) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2245 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2246 result.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2247 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2248 boost::mutex::scoped_lock lock(mutex_); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2249 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2250 // Lookup for the requested resource |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2251 int64_t instance; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2252 ResourceType type; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2253 if (!db_.LookupResource(instance, type, instancePublicId) || |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2254 type != ResourceType_Instance) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2255 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2256 return false; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2257 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2258 else |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2259 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2260 DicomMap tmp; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2261 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2262 db_.GetMainDicomTags(tmp, instance); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2263 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2264 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2265 int64_t series; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2266 if (!db_.LookupParent(series, instance)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2267 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2987
diff
changeset
|
2268 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2269 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2270 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2271 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2272 db_.GetMainDicomTags(tmp, series); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2273 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2274 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2275 int64_t study; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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parents:
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diff
changeset
|
2276 if (!db_.LookupParent(study, series)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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parents:
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diff
changeset
|
2277 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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2987
diff
changeset
|
2278 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2279 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2280 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2281 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2282 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2283 result.Merge(tmp); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2284 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2285 #ifndef NDEBUG |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2286 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2287 // Sanity test to check that all the main DICOM tags from the |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2288 // patient level are copied at the study level |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2289 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2290 int64_t patient; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2291 if (!db_.LookupParent(patient, study)) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2292 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2293 throw OrthancException(ErrorCode_InternalError); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2294 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2295 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2296 tmp.Clear(); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2297 db_.GetMainDicomTags(tmp, study); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2298 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2299 std::set<DicomTag> patientTags; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2300 tmp.GetTags(patientTags); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2301 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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2987
diff
changeset
|
2302 for (std::set<DicomTag>::const_iterator |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2303 it = patientTags.begin(); it != patientTags.end(); ++it) |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2304 { |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2305 assert(result.HasTag(*it)); |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
|
2306 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
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2307 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
|
2308 #endif |
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DicomMap::ExtractMainDicomTags()
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changeset
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2309 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
|
2310 return true; |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
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2311 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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changeset
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2312 } |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
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2313 |
0e1755e5efd0
DicomMap::ExtractMainDicomTags()
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diff
changeset
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2314 |
1555
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Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2315 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2316 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2317 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2318 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2319 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2320 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2321 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
2322 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
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2323 |
1668
de1413733c97
reconstructing main dicom tags
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diff
changeset
|
2324 |
de1413733c97
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diff
changeset
|
2325 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
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diff
changeset
|
2326 { |
de1413733c97
reconstructing main dicom tags
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diff
changeset
|
2327 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
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diff
changeset
|
2328 return db_.GetDatabaseVersion(); |
de1413733c97
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diff
changeset
|
2329 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
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1747
diff
changeset
|
2330 |
55d52567bebb
LookupResource implemented
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diff
changeset
|
2331 |
1753 | 2332 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2333 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
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1754
diff
changeset
|
2334 const ::Orthanc::LookupResource& lookup) |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
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1747
diff
changeset
|
2335 { |
1753 | 2336 boost::mutex::scoped_lock lock(mutex_); |
2337 | |
2338 std::list<int64_t> tmp; | |
2339 lookup.FindCandidates(tmp, db_); | |
2340 | |
2341 resources.resize(tmp.size()); | |
2342 instances.resize(tmp.size()); | |
2343 | |
2344 size_t pos = 0; | |
2345 for (std::list<int64_t>::const_iterator | |
2346 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2347 { | |
1754 | 2348 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2349 | |
1753 | 2350 int64_t instance; |
2120 | 2351 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2352 { |
2353 throw OrthancException(ErrorCode_InternalError); | |
2354 } | |
2355 | |
2356 resources[pos] = db_.GetPublicId(*it); | |
2357 instances[pos] = db_.GetPublicId(instance); | |
2358 } | |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
changeset
|
2359 } |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2360 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2361 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2362 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2363 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2364 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2365 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2366 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2367 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2368 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2369 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2370 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2371 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2372 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2373 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2374 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2375 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2376 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2377 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2378 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2379 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2380 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2381 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2382 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2383 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2384 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2385 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2386 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2387 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2388 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2389 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2390 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2391 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2392 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2393 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2394 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2395 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2396 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2397 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2398 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2399 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2400 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2401 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2402 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2403 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2404 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2405 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2406 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2407 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2408 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2409 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2410 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2411 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2412 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2413 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2414 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2415 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2416 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2417 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2418 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2419 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2420 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2421 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2422 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2423 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2424 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2425 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2426 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2427 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2428 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2429 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2430 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2431 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2432 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2433 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2434 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2435 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2436 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2437 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2438 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2439 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2440 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2441 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2442 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2443 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2444 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2445 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2446 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2447 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2448 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2449 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2450 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2451 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2452 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2453 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2454 } |
0 | 2455 } |