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annotate OrthancServer/Sources/ServerContext.cpp @ 5822:ca5622c27d6c attach-custom-data tip

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merged find-refactoring -> attach-custom-data
author Alain Mazy <am@orthanc.team>
date Tue, 01 Oct 2024 16:01:50 +0200
parents 023a99146dd0 272b0d0eef38
children
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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8 *
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9 * This program is free software: you can redistribute it and/or
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10 * modify it under the terms of the GNU General Public License as
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11 * published by the Free Software Foundation, either version 3 of the
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12 * License, or (at your option) any later version.
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13 *
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14 * This program is distributed in the hope that it will be useful, but
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15 * WITHOUT ANY WARRANTY; without even the implied warranty of
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16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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17 * General Public License for more details.
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18 *
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19 * You should have received a copy of the GNU General Public License
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20 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "PrecompiledHeadersServer.h"
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25 #include "ServerContext.h"
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26
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27 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h"
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28 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h"
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29 #include "../../OrthancFramework/Sources/DicomFormat/DicomStreamReader.h"
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30 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h"
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31 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h"
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32 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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33 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h"
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34 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h"
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35 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h"
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36 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h"
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37 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h"
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38 #include "../../OrthancFramework/Sources/Logging.h"
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39 #include "../../OrthancFramework/Sources/MallocMemoryBuffer.h"
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40 #include "../../OrthancFramework/Sources/MetricsRegistry.h"
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41 #include "../Plugins/Engine/OrthancPlugins.h"
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42
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43 #include "OrthancConfiguration.h"
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44 #include "OrthancRestApi/OrthancRestApi.h"
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45 #include "ResourceFinder.h"
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46 #include "Search/DatabaseLookup.h"
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47 #include "ServerJobs/OrthancJobUnserializer.h"
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48 #include "ServerToolbox.h"
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49 #include "StorageCommitmentReports.h"
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50
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51 #include <dcmtk/dcmdata/dcfilefo.h>
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52 #include <dcmtk/dcmnet/dimse.h>
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53
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54 #if HAVE_MALLOC_TRIM == 1
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55 # include <malloc.h>
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56 #endif
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57
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58 static size_t DICOM_CACHE_SIZE = 128 * 1024 * 1024; // 128 MB
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59
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60
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61 /**
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62 * IMPORTANT: We make the assumption that the same instance of
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63 * FileStorage can be accessed from multiple threads. This seems OK
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64 * since the filesystem implements the required locking mechanisms,
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65 * but maybe a read-writer lock on the "FileStorage" could be
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66 * useful. Conversely, "ServerIndex" already implements mutex-based
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67 * locking.
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68 **/
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69
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70 namespace Orthanc
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71 {
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72 static void ComputeStudyTags(ExpandedResource& resource,
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73 ServerContext& context,
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74 const std::string& studyPublicId,
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75 const std::set<DicomTag>& requestedTags);
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76
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77
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78 static bool IsUncompressedTransferSyntax(DicomTransferSyntax transferSyntax)
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79 {
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80 return (transferSyntax == DicomTransferSyntax_LittleEndianImplicit ||
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81 transferSyntax == DicomTransferSyntax_LittleEndianExplicit ||
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82 transferSyntax == DicomTransferSyntax_BigEndianExplicit);
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83 }
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84
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85
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86 static bool IsTranscodableTransferSyntax(DicomTransferSyntax transferSyntax)
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87 {
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88 return (
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89 // Do not try to transcode DICOM videos (new in Orthanc 1.8.2)
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90 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtMainLevel &&
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91 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtHighLevel &&
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92 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_1 &&
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93 transferSyntax != DicomTransferSyntax_MPEG4BDcompatibleHighProfileLevel4_1 &&
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94 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For2DVideo &&
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95 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For3DVideo &&
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96 transferSyntax != DicomTransferSyntax_MPEG4StereoHighProfileLevel4_2 &&
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97 transferSyntax != DicomTransferSyntax_HEVCMainProfileLevel5_1 &&
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98 transferSyntax != DicomTransferSyntax_HEVCMain10ProfileLevel5_1 &&
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99
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100 // Do not try to transcode special transfer syntaxes
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101 transferSyntax != DicomTransferSyntax_RFC2557MimeEncapsulation &&
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102 transferSyntax != DicomTransferSyntax_XML);
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103 }
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104
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106 ServerContext::StoreResult::StoreResult() :
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107 status_(StoreStatus_Failure),
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108 cstoreStatusCode_(0)
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109 {
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110 }
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111
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112
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113 #if HAVE_MALLOC_TRIM == 1
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114 void ServerContext::MemoryTrimmingThread(ServerContext* that,
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115 unsigned int intervalInSeconds)
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116 {
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117 Logging::SetCurrentThreadName("MEMORY-TRIM");
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118
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119 boost::posix_time::ptime lastExecution = boost::posix_time::second_clock::universal_time();
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120
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121 // This thread is started only if malloc_trim is defined
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122 while (!that->done_)
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123 {
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124 boost::posix_time::ptime now = boost::posix_time::second_clock::universal_time();
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125 boost::posix_time::time_duration elapsed = now - lastExecution;
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126
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127 if (elapsed.total_seconds() > intervalInSeconds)
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128 {
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129 // If possible, gives memory back to the system
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130 // (see OrthancServer/Resources/ImplementationNotes/memory_consumption.txt)
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131 {
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132 MetricsRegistry::Timer timer(that->GetMetricsRegistry(), "orthanc_memory_trimming_duration_ms");
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133 malloc_trim(128*1024);
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134 }
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diff changeset
135 lastExecution = boost::posix_time::second_clock::universal_time();
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136 }
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parents: 5337
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137
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138 boost::this_thread::sleep(boost::posix_time::milliseconds(100));
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139 }
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140 }
5182
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141 #endif
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142
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143
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144 void ServerContext::ChangeThread(ServerContext* that,
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145 unsigned int sleepDelay)
1436
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146 {
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147 Logging::SetCurrentThreadName("CHANGES");
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148
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149 while (!that->done_)
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150 {
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diff changeset
151 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay));
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152
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153 if (obj.get() != NULL)
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154 {
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155 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get());
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156
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diff changeset
157 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_);
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158 for (ServerListeners::iterator it = that->listeners_.begin();
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159 it != that->listeners_.end(); ++it)
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160 {
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161 try
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162 {
2134
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163 try
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164 {
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165 it->GetListener().SignalChange(change);
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166 }
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167 catch (std::bad_alloc&)
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168 {
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169 LOG(ERROR) << "Not enough memory while signaling a change";
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170 }
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171 catch (...)
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172 {
5410
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173 throw OrthancException(ErrorCode_InternalError, "Error while signaling a change");
2134
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174 }
1436
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175 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
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176 catch (OrthancException& e)
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177 {
0a3e3be59094 uncoupling of SignalChange for Lua scripts
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178 LOG(ERROR) << "Error in the " << it->GetDescription()
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179 << " callback while signaling a change: " << e.What()
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180 << " (code " << e.GetErrorCode() << ")";
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181 }
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182 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
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183 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
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184 }
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185 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
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186
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187
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188 void ServerContext::JobEventsThread(ServerContext* that,
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189 unsigned int sleepDelay)
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190 {
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191 Logging::SetCurrentThreadName("JOB-EVENTS");
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192
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193 while (!that->done_)
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194 {
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195 std::unique_ptr<IDynamicObject> obj(that->pendingJobEvents_.Dequeue(sleepDelay));
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196
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diff changeset
197 if (obj.get() != NULL)
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198 {
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
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199 const JobEvent& event = dynamic_cast<const JobEvent&>(*obj.get());
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200
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diff changeset
201 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_);
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202 for (ServerListeners::iterator it = that->listeners_.begin();
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diff changeset
203 it != that->listeners_.end(); ++it)
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204 {
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diff changeset
205 try
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diff changeset
206 {
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diff changeset
207 try
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208 {
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209 it->GetListener().SignalJobEvent(event);
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210 }
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diff changeset
211 catch (std::bad_alloc&)
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diff changeset
212 {
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213 LOG(ERROR) << "Not enough memory while signaling a job event";
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214 }
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diff changeset
215 catch (...)
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diff changeset
216 {
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217 throw OrthancException(ErrorCode_InternalError, "Error while signaling a job event");
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218 }
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219 }
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diff changeset
220 catch (OrthancException& e)
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diff changeset
221 {
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diff changeset
222 LOG(ERROR) << "Error in the " << it->GetDescription()
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223 << " callback while signaling a job event: " << e.What()
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diff changeset
224 << " (code " << e.GetErrorCode() << ")";
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225 }
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226 }
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227 }
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228 }
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229 }
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230
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231
2672
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diff changeset
232 void ServerContext::SaveJobsThread(ServerContext* that,
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233 unsigned int sleepDelay)
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234 {
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235 Logging::SetCurrentThreadName("SAVE-JOBS");
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diff changeset
236
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diff changeset
237 static const boost::posix_time::time_duration PERIODICITY =
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238 boost::posix_time::seconds(10);
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diff changeset
239
3efc44fac209 periodically saving jobs
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diff changeset
240 boost::posix_time::ptime next =
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diff changeset
241 boost::posix_time::microsec_clock::universal_time() + PERIODICITY;
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242
3efc44fac209 periodically saving jobs
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diff changeset
243 while (!that->done_)
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244 {
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245 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay));
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diff changeset
246
2673
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diff changeset
247 if (that->haveJobsChanged_ ||
8e0bc055d18c JobsRegistry::IObserver
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diff changeset
248 boost::posix_time::microsec_clock::universal_time() >= next)
2672
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diff changeset
249 {
2673
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diff changeset
250 that->haveJobsChanged_ = false;
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diff changeset
251 that->SaveJobsEngine();
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diff changeset
252 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY;
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253 }
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254 }
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255 }
2673
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diff changeset
256
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
257
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
258 void ServerContext::SignalJobSubmitted(const std::string& jobId)
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
259 {
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
260 haveJobsChanged_ = true;
5410
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents: 5346
diff changeset
261 pendingJobEvents_.Enqueue(new JobEvent(JobEventType_Submitted, jobId));
2673
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
262 }
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
263
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
264
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
265 void ServerContext::SignalJobSuccess(const std::string& jobId)
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
266 {
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
267 haveJobsChanged_ = true;
5410
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents: 5346
diff changeset
268 pendingJobEvents_.Enqueue(new JobEvent(JobEventType_Success, jobId));
2673
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
269 }
2672
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
270
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
271
2673
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
272 void ServerContext::SignalJobFailure(const std::string& jobId)
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
273 {
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
274 haveJobsChanged_ = true;
5410
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents: 5346
diff changeset
275 pendingJobEvents_.Enqueue(new JobEvent(JobEventType_Failure, jobId));
2673
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
276 }
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
277
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
278
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
279 void ServerContext::SetupJobsEngine(bool unitTesting,
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
280 bool loadJobsFromDatabase)
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
281 {
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
282 if (loadJobsFromDatabase)
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
283 {
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
284 std::string serialized;
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4519
diff changeset
285 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry, false /* not shared */))
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
286 {
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
287 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc";
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
288
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
289 try
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
290 {
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4203
diff changeset
291 OrthancJobUnserializer unserializer(*this);
2815
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
292 jobsEngine_.LoadRegistryFromString(unserializer, serialized);
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
293 }
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
294 catch (OrthancException& e)
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
295 {
2925
a80ba85d89e6 Orthanc starts even if jobs from a previous execution cannot be unserialized
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
296 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What();
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
297 }
5436
6f2b11bfee8d handle unknown exceptions in job registry unserialization
Alain Mazy <am@osimis.io>
parents: 5431
diff changeset
298 catch (const std::string& s)
6f2b11bfee8d handle unknown exceptions in job registry unserialization
Alain Mazy <am@osimis.io>
parents: 5431
diff changeset
299 {
6f2b11bfee8d handle unknown exceptions in job registry unserialization
Alain Mazy <am@osimis.io>
parents: 5431
diff changeset
300 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: \"" << s << "\"";
6f2b11bfee8d handle unknown exceptions in job registry unserialization
Alain Mazy <am@osimis.io>
parents: 5431
diff changeset
301 }
6f2b11bfee8d handle unknown exceptions in job registry unserialization
Alain Mazy <am@osimis.io>
parents: 5431
diff changeset
302 catch (...)
6f2b11bfee8d handle unknown exceptions in job registry unserialization
Alain Mazy <am@osimis.io>
parents: 5431
diff changeset
303 {
6f2b11bfee8d handle unknown exceptions in job registry unserialization
Alain Mazy <am@osimis.io>
parents: 5431
diff changeset
304 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway";
6f2b11bfee8d handle unknown exceptions in job registry unserialization
Alain Mazy <am@osimis.io>
parents: 5431
diff changeset
305 }
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
306 }
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
307 else
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
308 {
2671
06c0a6b8a871 new command-line argument: --no-jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
309 LOG(INFO) << "The last execution of Orthanc has archived no job";
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
310 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
311 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
312 else
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
313 {
2925
a80ba85d89e6 Orthanc starts even if jobs from a previous execution cannot be unserialized
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2898
diff changeset
314 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc";
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
315 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
316
4024
1d2b31fc782f new 'changes': JobSubmitted, JobSuccess, JobFailure
Alain Mazy <alain@mazy.be>
parents: 4022
diff changeset
317 jobsEngine_.GetRegistry().SetObserver(*this);
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
318 jobsEngine_.Start();
2815
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
319 isJobsEngineUnserialized_ = true;
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
320
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
321 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100));
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
322 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
323
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
324
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
325 void ServerContext::SaveJobsEngine()
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
326 {
3165
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
327 if (saveJobs_)
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
328 {
4268
0ae2ca210077 new macro TLOG() to replace VLOG() for trace logs with a category
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4265
diff changeset
329 LOG(TRACE) << "Serializing the content of the jobs engine";
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
330
3165
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
331 try
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
332 {
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
333 Json::Value value;
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
334 jobsEngine_.GetRegistry().Serialize(value);
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
335
4392
3af1d763763a confining Json::Reader and Json::*Writer into Toolbox
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4384
diff changeset
336 std::string serialized;
4394
f7104e9d044c functions to read/write JSON in OrthancPluginCppWrapper.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4392
diff changeset
337 Toolbox::WriteFastJson(serialized, value);
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
338
4607
f75c63aa9de0 differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4519
diff changeset
339 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, false /* not shared */, serialized);
3165
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
340 }
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
341 catch (OrthancException& e)
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
342 {
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
343 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What();
1fe524e211af New configuration option: "SaveJobs" to specify whether jobs are stored in the database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
344 }
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
345 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
346 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
347
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
348
5431
4be5f117aa0d metrics
Alain Mazy <am@osimis.io>
parents: 5427
diff changeset
349 void ServerContext::PublishCacheMetrics()
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
350 {
5431
4be5f117aa0d metrics
Alain Mazy <am@osimis.io>
parents: 5427
diff changeset
351 metricsRegistry_->SetFloatValue("orthanc_dicom_cache_size_mb",
5337
b376abae664a Metrics can be stored either as floating-point numbers, or as integers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5334
diff changeset
352 static_cast<float>(dicomCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024));
b376abae664a Metrics can be stored either as floating-point numbers, or as integers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5334
diff changeset
353 metricsRegistry_->SetIntegerValue("orthanc_dicom_cache_count", dicomCache_.GetNumberOfItems());
5431
4be5f117aa0d metrics
Alain Mazy <am@osimis.io>
parents: 5427
diff changeset
354
4be5f117aa0d metrics
Alain Mazy <am@osimis.io>
parents: 5427
diff changeset
355 metricsRegistry_->SetFloatValue("orthanc_storage_cache_size_mb",
4be5f117aa0d metrics
Alain Mazy <am@osimis.io>
parents: 5427
diff changeset
356 static_cast<float>(storageCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024));
4be5f117aa0d metrics
Alain Mazy <am@osimis.io>
parents: 5427
diff changeset
357 metricsRegistry_->SetIntegerValue("orthanc_storage_cache_count", storageCache_.GetNumberOfItems());
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
358 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
359
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
360
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
361 ServerContext::ServerContext(IDatabaseWrapper& database,
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2626
diff changeset
362 IStorageArea& area,
2950
dc18d5804746 support of JobsHistorySize set to zero
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
363 bool unitTesting,
5785
b4e7a85cde80 fix readonly init
Alain Mazy <am@orthanc.team>
parents: 5783
diff changeset
364 size_t maxCompletedJobs,
b4e7a85cde80 fix readonly init
Alain Mazy <am@orthanc.team>
parents: 5783
diff changeset
365 bool readOnly) :
b4e7a85cde80 fix readonly init
Alain Mazy <am@orthanc.team>
parents: 5783
diff changeset
366 index_(*this, database, (unitTesting ? 20 : 500), readOnly),
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
367 area_(area),
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 409
diff changeset
368 compressionEnabled_(false),
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
369 storeMD5_(true),
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
370 largeDicomThrottler_(1),
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
371 dicomCache_(DICOM_CACHE_SIZE),
2738
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
372 mainLua_(*this),
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
373 filterLua_(*this),
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
374 luaListener_(*this),
2950
dc18d5804746 support of JobsHistorySize set to zero
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
375 jobsEngine_(maxCompletedJobs),
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2135
diff changeset
376 #if ORTHANC_ENABLE_PLUGINS == 1
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
377 plugins_(NULL),
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
378 #endif
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
379 done_(false),
2673
8e0bc055d18c JobsRegistry::IObserver
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2672
diff changeset
380 haveJobsChanged_(false),
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
diff changeset
381 isJobsEngineUnserialized_(false),
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3346
diff changeset
382 metricsRegistry_(new MetricsRegistry),
3535
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
383 isHttpServerSecure_(true),
3813
aaaa442bfe39 moving SetOverwriteInstances from ServerIndex to ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3736
diff changeset
384 isExecuteLuaEnabled_(false),
5200
f8f1c4a9a216 New configuration option 'RestApiWriteToFileSystemEnabled'
Alain Mazy <am@osimis.io>
parents: 5185
diff changeset
385 isRestApiWriteToFileSystemEnabled_(false),
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
386 overwriteInstances_(false),
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
387 dcmtkTranscoder_(new DcmtkTranscoder),
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
388 isIngestTranscoding_(false),
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
389 ingestTranscodingOfUncompressed_(true),
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
390 ingestTranscodingOfCompressed_(true),
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
391 preferredTransferSyntax_(DicomTransferSyntax_LittleEndianExplicit),
5785
b4e7a85cde80 fix readonly init
Alain Mazy <am@orthanc.team>
parents: 5783
diff changeset
392 readOnly_(readOnly),
5111
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
393 deidentifyLogs_(false),
5785
b4e7a85cde80 fix readonly init
Alain Mazy <am@orthanc.team>
parents: 5783
diff changeset
394 serverStartTimeUtc_(boost::posix_time::second_clock::universal_time())
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 {
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
396 try
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
397 {
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
398 unsigned int lossyQuality;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
399
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
400 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
401 OrthancConfiguration::ReaderLock lock;
2965
9c0b0a6d8b54 MediaArchiveSize configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2956
diff changeset
402
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
403 queryRetrieveArchive_.reset(
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
404 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100)));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
405 mediaArchive_.reset(
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
406 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1)));
4143
1ec3e1e18f50 Add missing tag "Retrieve AE Title (0008,0054)" in C-FIND SCP responses
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4140
diff changeset
407 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET();
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
408 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2));
5817
272b0d0eef38 ReadOnly mode continued
Alain Mazy <am@orthanc.team>
parents: 5785
diff changeset
409
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
410 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true);
5817
272b0d0eef38 ReadOnly mode continued
Alain Mazy <am@orthanc.team>
parents: 5785
diff changeset
411 if (readOnly_ && saveJobs_)
272b0d0eef38 ReadOnly mode continued
Alain Mazy <am@orthanc.team>
parents: 5785
diff changeset
412 {
272b0d0eef38 ReadOnly mode continued
Alain Mazy <am@orthanc.team>
parents: 5785
diff changeset
413 LOG(WARNING) << "READ-ONLY SYSTEM: SaveJobs = true is incompatible with a ReadOnly system, ignoring this configuration";
272b0d0eef38 ReadOnly mode continued
Alain Mazy <am@orthanc.team>
parents: 5785
diff changeset
414 saveJobs_ = false;
272b0d0eef38 ReadOnly mode continued
Alain Mazy <am@orthanc.team>
parents: 5785
diff changeset
415 }
272b0d0eef38 ReadOnly mode continued
Alain Mazy <am@orthanc.team>
parents: 5785
diff changeset
416
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
417 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
418
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
419 // New configuration options in Orthanc 1.5.1
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
420 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always"));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
421 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
422 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
423
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
424 // New configuration option in Orthanc 1.6.0
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
425 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100)));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
426
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
427 // New options in Orthanc 1.7.0
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
428 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
429 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After"));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
430 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90);
3677
4182cde57afb refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
431
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
432 std::string s;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
433 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding"))
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
434 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
435 if (LookupTransferSyntax(ingestTransferSyntax_, s))
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
436 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
437 isIngestTranscoding_ = true;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
438 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to "
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
439 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_);
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
440
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
441 // New options in Orthanc 1.8.2
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
442 ingestTranscodingOfUncompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfUncompressed", true);
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
443 ingestTranscodingOfCompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfCompressed", true);
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
444
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
445 LOG(WARNING) << " Ingest transcoding will "
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
446 << (ingestTranscodingOfUncompressed_ ? "be applied" : "*not* be applied")
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
447 << " to uncompressed transfer syntaxes (Little Endian Implicit/Explicit, Big Endian Explicit)";
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
448
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
449 LOG(WARNING) << " Ingest transcoding will "
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
450 << (ingestTranscodingOfCompressed_ ? "be applied" : "*not* be applied")
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
451 << " to compressed transfer syntaxes";
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
452 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
453 else
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
454 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
455 throw OrthancException(ErrorCode_ParameterOutOfRange,
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
456 "Unknown transfer syntax for ingest transcoding: " + s);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
457 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
458 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
459 else
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
460 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
461 isIngestTranscoding_ = false;
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
462 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled";
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
463 }
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
464
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
465 // New options in Orthanc 1.8.2
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
466 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true))
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
467 {
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
468 deidentifyLogs_ = true;
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
469 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled";
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
470
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
471 DicomVersion version = StringToDicomVersion(
5334
5b2a5cc64cb1 upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5333
diff changeset
472 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2023b"));
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
473 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is "
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
474 << EnumerationToString(version);
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
475
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
476 logsDeidentifierRules_.SetupAnonymization(version);
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
477 }
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
478 else
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
479 {
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
480 deidentifyLogs_ = false;
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
481 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled";
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
482 }
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
483
4473
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
484 // New options in Orthanc 1.9.0
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
485 if (lock.GetConfiguration().LookupStringParameter(s, "DicomScuPreferredTransferSyntax") &&
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
486 !LookupTransferSyntax(preferredTransferSyntax_, s))
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
487 {
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
488 throw OrthancException(ErrorCode_ParameterOutOfRange,
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
489 "Unknown preferred transfer syntax: " + s);
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
490 }
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
491
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
492 CLOG(INFO, DICOM) << "Preferred transfer syntax for Orthanc C-STORE SCU: "
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
493 << GetTransferSyntaxUid(preferredTransferSyntax_);
4473
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
494
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
495 lock.GetConfiguration().GetAcceptedTransferSyntaxes(acceptedTransferSyntaxes_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
496
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
497 isUnknownSopClassAccepted_ = lock.GetConfiguration().GetBooleanParameter("UnknownSopClassAccepted", false);
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
498 }
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
499
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
500 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200);
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
501
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
502 listeners_.push_back(ServerListener(luaListener_, "Lua"));
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
503 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100));
5410
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents: 5346
diff changeset
504 jobEventsThread_ = boost::thread(JobEventsThread, this, (unitTesting ? 20 : 100));
5182
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5181
diff changeset
505
5159
f5907aecbaed conditional usage of malloc_trim
Alain Mazy <am@osimis.io>
parents: 5152
diff changeset
506 #if HAVE_MALLOC_TRIM == 1
5346
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load
Alain Mazy <am@osimis.io>
parents: 5337
diff changeset
507 LOG(INFO) << "Starting memory trimming thread at 30 seconds interval";
566e8d32bd3a Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load
Alain Mazy <am@osimis.io>
parents: 5337
diff changeset
508 memoryTrimmingThread_ = boost::thread(MemoryTrimmingThread, this, 30);
5159
f5907aecbaed conditional usage of malloc_trim
Alain Mazy <am@osimis.io>
parents: 5152
diff changeset
509 #else
5183
5ec3dcdf78b9 renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5182
diff changeset
510 LOG(INFO) << "Your platform does not support malloc_trim(), not starting the memory trimming thread";
5159
f5907aecbaed conditional usage of malloc_trim
Alain Mazy <am@osimis.io>
parents: 5152
diff changeset
511 #endif
5182
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5181
diff changeset
512
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
513 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality);
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
514 }
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
515 catch (OrthancException&)
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
516 {
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
517 Stop();
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
518 throw;
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
519 }
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520 }
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
522
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
523
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
524 ServerContext::~ServerContext()
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
525 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
526 if (!done_)
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
527 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
528 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!";
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
529 Stop();
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
530 }
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
531 }
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
532
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
533
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
534 void ServerContext::Stop()
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
535 {
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
536 if (!done_)
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
537 {
1459
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
538 {
3947
cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents: 3945
diff changeset
539 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_);
1459
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
540 listeners_.clear();
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
541 }
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
542
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
543 done_ = true;
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
544
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
545 if (changeThread_.joinable())
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
546 {
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
547 changeThread_.join();
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1436
diff changeset
548 }
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
549
5410
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents: 5346
diff changeset
550 if (jobEventsThread_.joinable())
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents: 5346
diff changeset
551 {
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents: 5346
diff changeset
552 jobEventsThread_.join();
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents: 5346
diff changeset
553 }
16cbfefa15e9 Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents: 5346
diff changeset
554
2672
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
555 if (saveJobsThread_.joinable())
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
556 {
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
557 saveJobsThread_.join();
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
558 }
3efc44fac209 periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2671
diff changeset
559
5183
5ec3dcdf78b9 renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5182
diff changeset
560 if (memoryTrimmingThread_.joinable())
5181
65b05b44ae4c properly finalizing the housekeeper thread that periodically calls malloc_trim()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5176
diff changeset
561 {
5183
5ec3dcdf78b9 renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5182
diff changeset
562 memoryTrimmingThread_.join();
5181
65b05b44ae4c properly finalizing the housekeeper thread that periodically calls malloc_trim()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5176
diff changeset
563 }
65b05b44ae4c properly finalizing the housekeeper thread that periodically calls malloc_trim()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5176
diff changeset
564
4024
1d2b31fc782f new 'changes': JobSubmitted, JobSuccess, JobFailure
Alain Mazy <alain@mazy.be>
parents: 4022
diff changeset
565 jobsEngine_.GetRegistry().ResetObserver();
2815
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
566
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
567 if (isJobsEngineUnserialized_)
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
568 {
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
569 // Avoid losing jobs if the JobsRegistry cannot be unserialized
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
570 SaveJobsEngine();
925d8dc03a23 unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2808
diff changeset
571 }
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
572
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
573 // Do not change the order below!
2570
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2507
diff changeset
574 jobsEngine_.Stop();
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
575 index_.Stop();
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
576 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
577 }
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
578
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
579
236
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
580 void ServerContext::SetCompressionEnabled(bool enabled)
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
581 {
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
582 if (enabled)
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
583 LOG(WARNING) << "Disk compression is enabled";
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
584 else
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
585 LOG(WARNING) << "Disk compression is disabled";
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
586
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
587 compressionEnabled_ = enabled;
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
588 }
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
589
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
590
1126
bf67431a7383 handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1124
diff changeset
591 void ServerContext::RemoveFile(const std::string& fileUuid,
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
592 FileContentType type,
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
593 const std::string& customData)
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
594 {
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
595 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
596 accessor.Remove(fileUuid, type, customData);
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
597 }
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
598
996
cf52f3bcb2b3 clarification of Lua classes wrt multithreading
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 995
diff changeset
599
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
600 ServerContext::StoreResult ServerContext::StoreAfterTranscoding(std::string& resultPublicId,
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
601 DicomInstanceToStore& dicom,
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
602 StoreInstanceMode mode,
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
603 bool isReconstruct)
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
604 {
3814
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
605 bool overwrite;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
606 switch (mode)
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
607 {
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
608 case StoreInstanceMode_Default:
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
609 overwrite = overwriteInstances_;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
610 break;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
611
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
612 case StoreInstanceMode_OverwriteDuplicate:
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
613 overwrite = true;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
614 break;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
615
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
616 case StoreInstanceMode_IgnoreDuplicate:
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
617 overwrite = false;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
618 break;
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
619
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
620 default:
023b2a9f3aa1 new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3813
diff changeset
621 throw OrthancException(ErrorCode_ParameterOutOfRange);
4499
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
622 }
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
623
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
624 bool hasPixelDataOffset;
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
625 uint64_t pixelDataOffset;
5316
03501a258d9e added instance metadata "PixelDataVR"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5296
diff changeset
626 ValueRepresentation pixelDataVR;
4499
6f99949b2878 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4473
diff changeset
627 hasPixelDataOffset = DicomStreamReader::LookupPixelDataOffset(
5316
03501a258d9e added instance metadata "PixelDataVR"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5296
diff changeset
628 pixelDataOffset, pixelDataVR, dicom.GetBufferData(), dicom.GetBufferSize());
4506
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
629
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
630 DicomTransferSyntax transferSyntax;
4506
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
631 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax);
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
632
4505
97d103b57cd1 removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4504
diff changeset
633 DicomMap summary;
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
634 dicom.GetSummary(summary); // -> from Orthanc 1.11.1, this includes the leaf nodes and sequences
5036
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4994
diff changeset
635
5176
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5160
diff changeset
636 std::set<DicomTag> allMainDicomTags;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5160
diff changeset
637 DicomMap::GetAllMainDicomTags(allMainDicomTags);
4505
97d103b57cd1 removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4504
diff changeset
638
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
639 try
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
640 {
3175
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
641 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms");
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
642 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
643
4507
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
644 DicomInstanceHasher hasher(summary);
b4c58795f3a8 widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4506
diff changeset
645 resultPublicId = hasher.HashInstance();
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
646
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
647 Json::Value dicomAsJson;
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
648 dicom.GetDicomAsJson(dicomAsJson, allMainDicomTags); // don't crop any main dicom tags
5036
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4994
diff changeset
649
1574
0c29ebe80ac9 give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1550
diff changeset
650 Json::Value simplifiedTags;
4504
7d1eabfac6e0 removed cached dicom-as-json from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4500
diff changeset
651 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicomAsJson, DicomToJsonFormat_Human);
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
652
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
653 // Test if the instance must be filtered out
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
654 StoreResult result;
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
655
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
656 if (!isReconstruct) // skip all filters if this is a reconstruction
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
657 {
3947
cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents: 3945
diff changeset
658 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_);
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
659
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
660 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it)
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
661 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
662 try
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
663 {
1574
0c29ebe80ac9 give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1550
diff changeset
664 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags))
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
665 {
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
666 result.SetStatus(StoreStatus_FilteredOut);
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
667 result.SetCStoreStatusCode(STATUS_Success); // to keep backward compatibility, we still return 'success'
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
668 break;
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
669 }
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
670
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
671 if (dicom.GetOrigin().GetRequestOrigin() == Orthanc::RequestOrigin_DicomProtocol)
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
672 {
4921
309fb4f02704 fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4919
diff changeset
673 uint16_t filterResult = STATUS_Success;
309fb4f02704 fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4919
diff changeset
674 if (!it->GetListener().FilterIncomingCStoreInstance(filterResult, dicom, simplifiedTags))
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
675 {
4921
309fb4f02704 fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4919
diff changeset
676 // The instance is to be discarded
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
677 result.SetStatus(StoreStatus_FilteredOut);
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
678 result.SetCStoreStatusCode(filterResult);
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
679 break;
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
680 }
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
681 }
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
682
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
683 }
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
684 catch (OrthancException& e)
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
685 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
686 LOG(ERROR) << "Error in the " << it->GetDescription()
2135
cadfe0a2a393 fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2134
diff changeset
687 << " callback while receiving an instance: " << e.What()
cadfe0a2a393 fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2134
diff changeset
688 << " (code " << e.GetErrorCode() << ")";
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
689 throw;
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1447
diff changeset
690 }
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
691 }
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
692 }
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
693
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
694 if (result.GetStatus() == StoreStatus_FilteredOut)
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
695 {
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
696 LOG(INFO) << "An incoming instance has been discarded by the filter";
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
697 return result;
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
698 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
699
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
700 // Remove the file from the DicomCache (useful if
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
701 // "OverwriteInstances" is set to "true")
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
702 dicomCache_.Invalidate(resultPublicId);
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2815
diff changeset
703
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
704 // TODO Should we use "gzip" instead?
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
705 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None);
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
706
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
707 std::string dicomCustomData;
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
708 std::string dicomUuid = Toolbox::GenerateUuid();
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
709
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
710 FileInfo dicomInfo = accessor.WriteInstance(dicomCustomData, dicom, dicom.GetBufferData(), dicom.GetBufferSize(),
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
711 FileContentType_Dicom, compression, storeMD5_, dicomUuid);
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
712
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
713 ServerIndex::Attachments attachments;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
714 attachments.push_back(dicomInfo);
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
715
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
716 FileInfo dicomUntilPixelData;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
717 if (hasPixelDataOffset &&
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
718 (!area_.HasReadRange() ||
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
719 compressionEnabled_))
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
720 {
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
721 std::string dicomHeaderCustomData;
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
722 std::string dicomHeaderUuid = Toolbox::GenerateUuid();
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
723
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
724 dicomUntilPixelData = accessor.WriteInstance(dicomHeaderCustomData, dicom, dicom.GetBufferData(), pixelDataOffset,
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
725 FileContentType_DicomUntilPixelData, compression, storeMD5_, dicomHeaderUuid);
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
726 attachments.push_back(dicomUntilPixelData);
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
727 }
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
728
1067
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
729 typedef std::map<MetadataType, std::string> InstanceMetadata;
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
730 InstanceMetadata instanceMetadata;
5464
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
731
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
732 try
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
733 {
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
734 result.SetStatus(index_.Store(
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
735 instanceMetadata, summary, attachments, dicom.GetMetadata(), dicom.GetOrigin(), overwrite,
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
736 hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset, pixelDataVR, isReconstruct));
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
737 }
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
738 catch (OrthancException& ex)
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
739 {
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
740 if (ex.GetErrorCode() == ErrorCode_DuplicateResource)
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
741 {
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
742 LOG(WARNING) << "Duplicate instance, deleting the attachments";
5529
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
743 }
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
744 else
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
745 {
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
746 LOG(ERROR) << "Unexpected error while storing an instance in DB, cancelling and deleting the attachments: " << ex.GetDetails();
5464
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
747 }
5514
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5497
diff changeset
748
5529
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
749 accessor.Remove(dicomInfo);
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
750
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
751 if (dicomUntilPixelData.IsValid())
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
752 {
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
753 accessor.Remove(dicomUntilPixelData);
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
754 }
acdb8d78bf99 Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents: 5514
diff changeset
755
5514
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5497
diff changeset
756 throw;
5464
38f1d06875ad delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents: 5450
diff changeset
757 }
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
758
1433
461e7554bff7 refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1427
diff changeset
759 // Only keep the metadata for the "instance" level
4506
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
760 dicom.ClearMetadata();
1067
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
761
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
762 for (InstanceMetadata::const_iterator it = instanceMetadata.begin();
1304
7b6925b0890d cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
763 it != instanceMetadata.end(); ++it)
1067
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
764 {
4506
ac69c9f76c71 refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4505
diff changeset
765 dicom.AddMetadata(ResourceType_Instance, it->first, it->second);
1067
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
766 }
ace99e272203 access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1066
diff changeset
767
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
768 if (result.GetStatus() != StoreStatus_Success)
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
769 {
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
770 accessor.Remove(dicomInfo);
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
771
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
772 if (dicomUntilPixelData.IsValid())
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
773 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
774 accessor.Remove(dicomUntilPixelData);
4500
3b4940bca158 added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4499
diff changeset
775 }
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
776 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
777
4994
2f30aa99c2db cppcheck
Alain Mazy <am@osimis.io>
parents: 4988
diff changeset
778 if (!isReconstruct)
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
779 {
4994
2f30aa99c2db cppcheck
Alain Mazy <am@osimis.io>
parents: 4988
diff changeset
780 // skip logs in case of reconstruction
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
781 switch (result.GetStatus())
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
782 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
783 case StoreStatus_Success:
5496
e4294feb0a3a logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents: 5485
diff changeset
784 LOG(INFO) << "New instance stored (" << resultPublicId << ")";
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
785 break;
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
786
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
787 case StoreStatus_AlreadyStored:
5496
e4294feb0a3a logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents: 5485
diff changeset
788 LOG(INFO) << "Instance already stored (" << resultPublicId << ")";
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
789 break;
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
790
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
791 case StoreStatus_Failure:
5496
e4294feb0a3a logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents: 5485
diff changeset
792 LOG(ERROR) << "Unknown store failure while storing instance " << resultPublicId;
5296
5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents: 5248
diff changeset
793 throw OrthancException(ErrorCode_InternalError, HttpStatus_500_InternalServerError);
5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents: 5248
diff changeset
794
5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents: 5248
diff changeset
795 case StoreStatus_StorageFull:
5496
e4294feb0a3a logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents: 5485
diff changeset
796 LOG(ERROR) << "Storage full while storing instance " << resultPublicId;
5296
5053a10da5a2 Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents: 5248
diff changeset
797 throw OrthancException(ErrorCode_FullStorage, HttpStatus_507_InsufficientStorage);
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
798
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
799 default:
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
800 // This should never happen
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
801 break;
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
802 }
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
803
4994
2f30aa99c2db cppcheck
Alain Mazy <am@osimis.io>
parents: 4988
diff changeset
804 // skip all signals if this is a reconstruction
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
805 if (result.GetStatus() == StoreStatus_Success ||
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
806 result.GetStatus() == StoreStatus_AlreadyStored)
1066
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
807 {
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
808 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_);
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
809
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
810 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it)
1066
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
811 {
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
812 try
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
813 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
814 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags);
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
815 }
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
816 catch (OrthancException& e)
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
817 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
818 LOG(ERROR) << "Error in the " << it->GetDescription()
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
819 << " callback while receiving an instance: " << e.What()
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
820 << " (code " << e.GetErrorCode() << ")";
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
821 }
1066
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
822 }
bb82e5e818e9 OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1065
diff changeset
823 }
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
824 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
825
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
826 return result;
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
827 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
828 catch (OrthancException& e)
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
829 {
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
830 if (e.GetErrorCode() == ErrorCode_InexistentTag)
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
831 {
4505
97d103b57cd1 removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4504
diff changeset
832 summary.LogMissingTagsForStore();
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
833 }
4505
97d103b57cd1 removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4504
diff changeset
834
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
835 throw;
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
836 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
837 }
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
838
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
839
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
840 ServerContext::StoreResult ServerContext::Store(std::string& resultPublicId,
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
841 DicomInstanceToStore& receivedDicom,
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
842 StoreInstanceMode mode)
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
843 {
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
844 DicomInstanceToStore* dicom = &receivedDicom;
4913
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
845
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
846 // WARNING: The scope of "modifiedBuffer" and "modifiedDicom" must
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
847 // be the same as that of "dicom"
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
848 MallocMemoryBuffer modifiedBuffer;
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
849 std::unique_ptr<DicomInstanceToStore> modifiedDicom;
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
850
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
851 #if ORTHANC_ENABLE_PLUGINS == 1
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
852 if (HasPlugins())
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
853 {
4913
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
854 // New in Orthanc 1.10.0
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
855
4919
676e03e69703 added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4913
diff changeset
856 OrthancPluginReceivedInstanceAction action = GetPlugins().ApplyReceivedInstanceCallbacks(
676e03e69703 added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4913
diff changeset
857 modifiedBuffer, receivedDicom.GetBufferData(), receivedDicom.GetBufferSize(), receivedDicom.GetOrigin().GetRequestOrigin());
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
858
4913
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
859 switch (action)
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
860 {
4919
676e03e69703 added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4913
diff changeset
861 case OrthancPluginReceivedInstanceAction_Discard:
4913
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
862 {
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
863 CLOG(INFO, PLUGINS) << "A plugin has discarded the instance in its ReceivedInstanceCallback";
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
864 StoreResult result;
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
865 result.SetStatus(StoreStatus_FilteredOut);
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
866 return result;
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
867 }
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
868
4919
676e03e69703 added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4913
diff changeset
869 case OrthancPluginReceivedInstanceAction_KeepAsIs:
676e03e69703 added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4913
diff changeset
870 // This path is also used when no ReceivedInstanceCallback is installed by the plugins
4913
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
871 break;
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
872
4919
676e03e69703 added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4913
diff changeset
873 case OrthancPluginReceivedInstanceAction_Modify:
4913
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
874 if (modifiedBuffer.GetSize() > 0 &&
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
875 modifiedBuffer.GetData() != NULL)
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
876 {
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
877 CLOG(INFO, PLUGINS) << "A plugin has modified the instance in its ReceivedInstanceCallback";
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
878 modifiedDicom.reset(DicomInstanceToStore::CreateFromBuffer(modifiedBuffer.GetData(), modifiedBuffer.GetSize()));
4919
676e03e69703 added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4913
diff changeset
879 modifiedDicom->SetOrigin(receivedDicom.GetOrigin());
4913
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
880 dicom = modifiedDicom.get();
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
881 }
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
882 else
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
883 {
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
884 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback plugin is not returning a modified buffer while it has modified the instance");
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
885 }
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
886 break;
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
887
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
888 default:
c1b19f95e166 fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4900
diff changeset
889 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback has returned an invalid value");
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
890 }
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
891 }
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
892 #endif
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
893
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
894 return TranscodeAndStore(resultPublicId, dicom, mode);
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
895 }
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
896
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
897 ServerContext::StoreResult ServerContext::TranscodeAndStore(std::string& resultPublicId,
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
898 DicomInstanceToStore* dicom,
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
899 StoreInstanceMode mode,
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
900 bool isReconstruct)
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
901 {
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
902
5148
2df546a76e17 If specifying 'Transcode' option to /modify or /anonymize, this value will take over the 'IngestTranscoding' global configuration
Alain Mazy <am@osimis.io>
parents: 5147
diff changeset
903 if (!isIngestTranscoding_ || dicom->SkipIngestTranscoding())
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
904 {
3941
771dbd9eb3bd class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3939
diff changeset
905 // No automated transcoding. This was the only path in Orthanc <= 1.6.1.
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
906 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct);
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
907 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
908 else
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
909 {
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
910 // Automated transcoding of incoming DICOM instance
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
911
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
912 bool transcode = false;
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
913
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
914 DicomTransferSyntax sourceSyntax;
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
915 if (!dicom->LookupTransferSyntax(sourceSyntax) ||
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
916 sourceSyntax == ingestTransferSyntax_)
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
917 {
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
918 // Don't transcode if the incoming DICOM is already in the proper transfer syntax
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
919 transcode = false;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
920 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
921 else if (!IsTranscodableTransferSyntax(sourceSyntax))
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
922 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
923 // Don't try to transcode video files, this is useless (new in
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
924 // Orthanc 1.8.2). This could be accepted in the future if
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
925 // video transcoding gets implemented.
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
926 transcode = false;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
927 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
928 else if (IsUncompressedTransferSyntax(sourceSyntax))
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
929 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
930 // This is an uncompressed transfer syntax (new in Orthanc 1.8.2)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
931 transcode = ingestTranscodingOfUncompressed_;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
932 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
933 else
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
934 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
935 // This is an compressed transfer syntax (new in Orthanc 1.8.2)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
936 transcode = ingestTranscodingOfCompressed_;
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
937 }
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
938
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
939 if (!transcode)
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
940 {
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
941 // No transcoding
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
942 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct);
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
943 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
944 else
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
945 {
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
946 // Trancoding
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
947 std::set<DicomTransferSyntax> syntaxes;
3939
c205f670098e new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
948 syntaxes.insert(ingestTransferSyntax_);
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
949
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
950 IDicomTranscoder::DicomImage source;
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
951 source.SetExternalBuffer(dicom->GetBufferData(), dicom->GetBufferSize());
4384
7e0d015ad109 new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4376
diff changeset
952
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
953 IDicomTranscoder::DicomImage transcoded;
3951
5fe8c6d3212e removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3947
diff changeset
954 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */))
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
955 {
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
956 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile());
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
957
4508
8f9090b137f1 Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4507
diff changeset
958 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*tmp));
4845
02d77189d8ba added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents: 4831
diff changeset
959 toStore->SetOrigin(dicom->GetOrigin());
5147
19ccae2e0371 Fix issue #212 (Anonymization process transcodes data and loses resource link)
Alain Mazy <am@osimis.io>
parents: 5111
diff changeset
960 toStore->CopyMetadata(dicom->GetMetadata());
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
961
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
962 StoreResult result = StoreAfterTranscoding(resultPublicId, *toStore, mode, isReconstruct);
3938
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3931
diff changeset
963 assert(resultPublicId == tmp->GetHasher().HashInstance());
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3931
diff changeset
964
4796
94616af363ec added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
965 return result;
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
966 }
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
967 else
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
968 {
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
969 // Cannot transcode => store the original file
4988
8fba26292a9f Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents: 4984
diff changeset
970 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct);
3945
0b3256c3ee14 simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3944
diff changeset
971 }
3912
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
972 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
973 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
974 }
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
975
7610af1532c3 prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3911
diff changeset
976
1146
200fcac0deb4 optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1145
diff changeset
977 void ServerContext::AnswerAttachment(RestApiOutput& output,
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
978 const std::string& resourceId,
1146
200fcac0deb4 optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1145
diff changeset
979 FileContentType content)
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
980 {
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 227
diff changeset
981 FileInfo attachment;
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
982 int64_t revision;
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
983 if (!index_.LookupAttachment(attachment, revision, resourceId, content))
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 227
diff changeset
984 {
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
985 throw OrthancException(ErrorCode_UnknownResource);
236
6d9be2b470b4 compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
986 }
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
987 else
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
988 {
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
989 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
990 accessor.AnswerFile(output, attachment, GetFileContentMime(content));
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
991 }
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
992 }
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
993
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
994
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
995 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId,
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
996 ResourceType resourceType,
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
997 FileContentType attachmentType,
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
998 CompressionType compression)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
999 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1000 LOG(INFO) << "Changing compression type for attachment "
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1001 << EnumerationToString(attachmentType)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1002 << " of resource " << resourceId << " to "
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1003 << compression;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1004
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1005 FileInfo attachment;
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1006 int64_t revision;
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1007 if (!index_.LookupAttachment(attachment, revision, resourceId, attachmentType))
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1008 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1009 throw OrthancException(ErrorCode_UnknownResource);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1010 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1011
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1012 if (attachment.GetCompressionType() == compression)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1013 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1014 // Nothing to do
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1015 return;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1016 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1017
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1018 std::string content;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1019
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1020 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1021 accessor.Read(content, attachment);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1022
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1023 std::string newUuid = Toolbox::GenerateUuid();
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1024 std::string newCustomData;
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1025 FileInfo modified;
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1026
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1027 // if (attachmentType == FileContentType_Dicom || attachmentType == FileContentType_DicomUntilPixelData)
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1028 // {
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1029 // // DicomInstanceToStore instance;
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1030 // // TODO_CUSTOM_DATA: get the Instance such that we can call accessor.GetCustomData ...
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1031 // // modified = accessor.WriteInstance(newCustomData, instance, content.empty() ? NULL : content.c_str(),
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1032 // // content.size(), attachmentType, compression, storeMD5_, newUuid);
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1033 // }
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1034 // else
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1035 {
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1036 ResourceType resourceType = ResourceType_Instance; //TODO_CUSTOM_DATA: get it from above in the stack
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1037 modified = accessor.WriteAttachment(newCustomData, resourceId, resourceType, content.empty() ? NULL : content.c_str(),
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1038 content.size(), attachmentType, compression, storeMD5_, newUuid);
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1039 }
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1040
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1041
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1042
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1043 try
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1044 {
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1045 int64_t newRevision; // ignored
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4629
diff changeset
1046 StoreStatus status = index_.AddAttachment(newRevision, modified, resourceId,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4629
diff changeset
1047 true, revision, modified.GetUncompressedMD5());
1700
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1048 if (status != StoreStatus_Success)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1049 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1050 accessor.Remove(modified);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1051 throw OrthancException(ErrorCode_Database);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1052 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1053 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1054 catch (OrthancException&)
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1055 {
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1056 accessor.Remove(modified);
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1057 throw;
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1058 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1059 }
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1060
f5ddbd9239dd New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1632
diff changeset
1061
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1062 static void InjectEmptyPixelData(Json::Value& dicomAsJson)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1063 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1064 // This is for backward compatibility with Orthanc <= 1.9.0
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1065 Json::Value pixelData = Json::objectValue;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1066 pixelData["Name"] = "PixelData";
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1067 pixelData["Type"] = "Null";
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1068 pixelData["Value"] = Json::nullValue;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1069
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1070 dicomAsJson["7fe0,0010"] = pixelData;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1071 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1072
5772
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1073
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1074 static bool LookupMetadata(std::string& value,
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1075 MetadataType key,
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1076 const std::map<MetadataType, std::string>& instanceMetadata)
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1077 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1078 std::map<MetadataType, std::string>::const_iterator found = instanceMetadata.find(key);
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1079
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1080 if (found == instanceMetadata.end())
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1081 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1082 return false;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1083 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1084 else
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1085 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1086 value = found->second;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1087 return true;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1088 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1089 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1090
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1091
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1092 static bool LookupAttachment(FileInfo& target,
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1093 FileContentType type,
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1094 const std::map<FileContentType, FileInfo>& attachments)
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1095 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1096 std::map<FileContentType, FileInfo>::const_iterator found = attachments.find(type);
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1097
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1098 if (found == attachments.end())
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1099 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1100 return false;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1101 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1102 else if (found->second.GetContentType() == type)
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1103 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1104 target = found->second;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1105 return true;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1106 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1107 else
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1108 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1109 throw OrthancException(ErrorCode_DatabasePlugin);
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1110 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1111 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1112
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1113
2124
2b1520efa282 cleaning up
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2122
diff changeset
1114 void ServerContext::ReadDicomAsJson(Json::Value& result,
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
1115 const std::string& instancePublicId,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
1116 const std::set<DicomTag>& ignoreTagLength)
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
1117 {
5772
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1118 // TODO-FIND: This is a compatibility method, should be removed
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1119
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1120 std::map<MetadataType, std::string> metadata;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1121 std::map<FileContentType, FileInfo> attachments;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1122
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1123 FileInfo attachment;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1124 int64_t revision; // Ignored
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1125
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1126 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom))
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1127 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1128 attachments[FileContentType_Dicom] = attachment;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1129 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1130
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1131 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData))
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1132 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1133 attachments[FileContentType_DicomUntilPixelData] = attachment;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1134 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1135
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1136 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomAsJson))
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1137 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1138 attachments[FileContentType_DicomAsJson] = attachment;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1139 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1140
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1141 std::string s;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1142 if (index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance,
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1143 MetadataType_Instance_PixelDataOffset))
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1144 {
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1145 metadata[MetadataType_Instance_PixelDataOffset] = s;
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1146 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1147
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1148 ReadDicomAsJson(result, instancePublicId, metadata, attachments, ignoreTagLength);
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1149 }
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1150
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1151
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1152 void ServerContext::ReadDicomAsJson(Json::Value& result,
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1153 const std::string& instancePublicId,
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1154 const std::map<MetadataType, std::string>& instanceMetadata,
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1155 const std::map<FileContentType, FileInfo>& instanceAttachments,
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1156 const std::set<DicomTag>& ignoreTagLength)
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1157 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1158 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1159 * CASE 1: The DICOM file, truncated at pixel data, is available
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1160 * as an attachment (it was created either because the storage
4666
Alain Mazy <am@osimis.io>
parents: 4640
diff changeset
1161 * area does not support range reads, or if "StorageCompression"
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1162 * is enabled). Simply return this attachment.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1163 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1164
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1165 FileInfo attachment;
5772
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1166
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1167 if (LookupAttachment(attachment, FileContentType_DicomUntilPixelData, instanceAttachments))
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
1168 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1169 std::string dicom;
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1170
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1171 {
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1172 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1173 accessor.Read(dicom, attachment);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1174 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1175
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1176 ParsedDicomFile parsed(dicom);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1177 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1178 InjectEmptyPixelData(result);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1179 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1180 else
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1181 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1182 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1183 * The truncated DICOM file is not stored as a standalone
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1184 * attachment. Lookup whether the pixel data offset has already
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1185 * been computed for this instance.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1186 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1187
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1188 bool hasPixelDataOffset;
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
1189 uint64_t pixelDataOffset = 0; // dummy initialization
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1190
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1191 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1192 std::string s;
5772
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1193 if (LookupMetadata(s, MetadataType_Instance_PixelDataOffset, instanceMetadata))
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1194 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1195 hasPixelDataOffset = false;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1196
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1197 if (!s.empty())
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1198 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1199 try
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1200 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1201 pixelDataOffset = boost::lexical_cast<uint64_t>(s);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1202 hasPixelDataOffset = true;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1203 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1204 catch (boost::bad_lexical_cast&)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1205 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1206 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1207 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1208
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1209 if (!hasPixelDataOffset)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1210 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1211 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1212 }
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1213 }
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1214 else
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1215 {
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1216 // This instance was created by a version of Orthanc <= 1.9.0
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1217 hasPixelDataOffset = false;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1218 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1219 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1220
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1221
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1222 if (hasPixelDataOffset &&
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1223 area_.HasReadRange() &&
5772
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1224 LookupAttachment(attachment, FileContentType_Dicom, instanceAttachments) &&
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1225 attachment.GetCompressionType() == CompressionType_None)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1226 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1227 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1228 * CASE 2: The pixel data offset is known, AND that a range read
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1229 * can be used to retrieve the truncated DICOM file. Note that
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1230 * this case cannot be used if "StorageCompression" option is
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1231 * "true".
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1232 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1233
4900
ea5f1c6ed07e fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1234 std::string dicom;
ea5f1c6ed07e fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1235
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
1236 {
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1237 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
5420
d37dff2c0028 Optimized the MemoryStringCache to prevent loading the same file multiple times if multiple users request the same file at the same time
Alain Mazy <am@osimis.io>
parents: 5410
diff changeset
1238 accessor.ReadStartRange(dicom, attachment, pixelDataOffset);
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1239 }
4900
ea5f1c6ed07e fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1240
ea5f1c6ed07e fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1241 assert(dicom.size() == pixelDataOffset);
ea5f1c6ed07e fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1242 ParsedDicomFile parsed(dicom);
ea5f1c6ed07e fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1243 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength);
ea5f1c6ed07e fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1244 InjectEmptyPixelData(result);
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1245 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1246 else if (ignoreTagLength.empty() &&
5772
093a8693ba16 replaced SetRetrieveOneInstanceIdentifier() by SetRetrieveOneInstanceMetadataAndAttachments()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5768
diff changeset
1247 LookupAttachment(attachment, FileContentType_DicomAsJson, instanceAttachments))
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1248 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1249 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1250 * CASE 3: This instance was created using Orthanc <=
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1251 * 1.9.0. Reuse the old "DICOM-as-JSON" attachment if available.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1252 * This is for backward compatibility: A call to
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1253 * "/tools/invalidate-tags" or to one flavors of
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1254 * "/.../.../reconstruct" will disable this case.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1255 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1256
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1257 std::string dicomAsJson;
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1258
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1259 {
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1260 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1261 accessor.Read(dicomAsJson, attachment);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1262 }
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1263
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1264 if (!Toolbox::ReadJson(result, dicomAsJson))
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1265 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1266 throw OrthancException(ErrorCode_CorruptedFile,
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1267 "Corrupted DICOM-as-JSON attachment of instance: " + instancePublicId);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1268 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1269 }
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1270 else
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1271 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1272 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1273 * CASE 4: Neither the truncated DICOM file is accessible, nor
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1274 * the DICOM-as-JSON summary. We have to retrieve the full DICOM
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1275 * file from the storage area.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1276 **/
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1277
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1278 std::string dicom;
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1279 ReadDicom(dicom, instancePublicId);
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1280
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1281 ParsedDicomFile parsed(dicom);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1282 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength);
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1283
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1284 if (!hasPixelDataOffset)
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1285 {
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1286 /**
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1287 * The pixel data offset was never computed for this
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1288 * instance, which indicates that it was created using
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1289 * Orthanc <= 1.9.0, or that calls to
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1290 * "LookupPixelDataOffset()" from earlier versions of
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1291 * Orthanc have failed. Try again this precomputation now
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1292 * for future calls.
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1293 **/
5316
03501a258d9e added instance metadata "PixelDataVR"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5296
diff changeset
1294 ValueRepresentation pixelDataVR;
03501a258d9e added instance metadata "PixelDataVR"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5296
diff changeset
1295 if (DicomStreamReader::LookupPixelDataOffset(pixelDataOffset, pixelDataVR, dicom) &&
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1296 pixelDataOffset < dicom.size())
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1297 {
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1298 index_.OverwriteMetadata(instancePublicId, MetadataType_Instance_PixelDataOffset,
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1299 boost::lexical_cast<std::string>(pixelDataOffset));
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1300
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1301 if (!area_.HasReadRange() ||
4519
a3c6678aa7b1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4514
diff changeset
1302 compressionEnabled_)
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1303 {
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1304 int64_t newRevision;
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1305 AddAttachment(newRevision, instancePublicId, ResourceType_Instance, FileContentType_DicomUntilPixelData,
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1306 dicom.empty() ? NULL: dicom.c_str(), pixelDataOffset,
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1307 false /* no old revision */, -1 /* dummy revision */, "" /* dummy MD5 */);
4514
5b929e6b3c36 removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4513
diff changeset
1308 }
4513
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1309 }
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1310 }
1f455b86b054 simplification in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4511
diff changeset
1311 }
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
1312 }
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
1313 }
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1314
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1315
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1316 void ServerContext::ReadDicomAsJson(Json::Value& result,
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1317 const std::string& instancePublicId)
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1318 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1319 std::set<DicomTag> ignoreTagLength;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1320 ReadDicomAsJson(result, instancePublicId, ignoreTagLength);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1321 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1322
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1323
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1324 void ServerContext::ReadDicom(std::string& dicom,
5427
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1325 std::string& attachmentId,
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1326 const std::string& instancePublicId)
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1327 {
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1328 int64_t revision;
5427
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1329 ReadAttachment(dicom, revision, attachmentId, instancePublicId, FileContentType_Dicom, true /* uncompress */);
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1330 }
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1331
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1332
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1333 void ServerContext::ReadDicom(std::string& dicom,
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1334 const std::string& instancePublicId)
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1335 {
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1336 std::string attachmentId;
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1337 ReadDicom(dicom, attachmentId, instancePublicId);
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1338 }
4792
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1339
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1340 void ServerContext::ReadDicomForHeader(std::string& dicom,
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1341 const std::string& instancePublicId)
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1342 {
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1343 if (!ReadDicomUntilPixelData(dicom, instancePublicId))
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1344 {
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1345 ReadDicom(dicom, instancePublicId);
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1346 }
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1347 }
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1348
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1349 bool ServerContext::ReadDicomUntilPixelData(std::string& dicom,
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1350 const std::string& instancePublicId)
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1351 {
5333
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1352 FileInfo attachment;
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1353 int64_t revision; // Ignored
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1354 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData))
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1355 {
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1356 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1357
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1358 accessor.Read(dicom, attachment);
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1359 assert(dicom.size() == attachment.GetUncompressedSize());
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1360
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1361 return true;
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1362 }
816968b5a031 speeded up ServerContext::ReadDicomUntilPixelData() if storage compression is on
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5330
diff changeset
1363
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1364 if (!area_.HasReadRange())
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1365 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1366 return false;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1367 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1368
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1369 if (!index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom))
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1370 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1371 throw OrthancException(ErrorCode_InternalError,
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1372 "Unable to read the DICOM file of instance " + instancePublicId);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1373 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1374
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1375 std::string s;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1376
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1377 if (attachment.GetCompressionType() == CompressionType_None &&
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1378 index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance,
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1379 MetadataType_Instance_PixelDataOffset) &&
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1380 !s.empty())
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1381 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1382 try
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1383 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1384 uint64_t pixelDataOffset = boost::lexical_cast<uint64_t>(s);
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1385
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1386 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
4792
434843934307 Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
parents: 4789
diff changeset
1387
5420
d37dff2c0028 Optimized the MemoryStringCache to prevent loading the same file multiple times if multiple users request the same file at the same time
Alain Mazy <am@osimis.io>
parents: 5410
diff changeset
1388 accessor.ReadStartRange(dicom, attachment, pixelDataOffset);
4900
ea5f1c6ed07e fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1389 assert(dicom.size() == pixelDataOffset);
ea5f1c6ed07e fix cache of storage area
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4892
diff changeset
1390
4511
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1391 return true; // Success
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1392 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1393 catch (boost::bad_lexical_cast&)
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1394 {
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1395 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1396 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1397 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1398
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1399 return false;
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1400 }
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1401
1ec156a0da38 ServerContext::ReadDicomUntilPixelData()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4509
diff changeset
1402
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2127
diff changeset
1403 void ServerContext::ReadAttachment(std::string& result,
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1404 int64_t& revision,
5427
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1405 std::string& attachmentId,
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2127
diff changeset
1406 const std::string& instancePublicId,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2127
diff changeset
1407 FileContentType content,
5048
22966345eaba skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents: 5044
diff changeset
1408 bool uncompressIfNeeded,
22966345eaba skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents: 5044
diff changeset
1409 bool skipCache)
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1410 {
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 227
diff changeset
1411 FileInfo attachment;
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1412 if (!index_.LookupAttachment(attachment, revision, instancePublicId, content))
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1413 {
2956
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
1414 throw OrthancException(ErrorCode_InternalError,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
1415 "Unable to read attachment " + EnumerationToString(content) +
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2950
diff changeset
1416 " of instance " + instancePublicId);
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1417 }
1550
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
1418
3175
574890d14c92 new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
1419 assert(attachment.GetContentType() == content);
5427
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1420 attachmentId = attachment.GetUuid();
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
1421
1550
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
1422 {
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1423 std::unique_ptr<StorageAccessor> accessor;
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1424
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1425 if (skipCache)
5048
22966345eaba skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents: 5044
diff changeset
1426 {
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1427 accessor.reset(new StorageAccessor(area_, GetMetricsRegistry()));
5048
22966345eaba skip StorageCache when verifying md5 or when re-compressing attachments
Alain Mazy <am@osimis.io>
parents: 5044
diff changeset
1428 }
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1429 else
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1430 {
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1431 accessor.reset(new StorageAccessor(area_, storageCache_, GetMetricsRegistry()));
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1432 }
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1433
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1434 if (uncompressIfNeeded)
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1435 {
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1436 accessor->Read(result, attachment);
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1437 }
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1438 else
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1439 {
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1440 // Do not uncompress the content of the storage area, return the
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1441 // raw data
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1442 accessor->ReadRaw(result, attachment);
4509
98b7b9d21d83 removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
1443 }
1550
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1549
diff changeset
1444 }
227
209ca3f6db62 dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1445 }
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1446
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1447
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1448 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& context,
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1449 const std::string& instancePublicId) :
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1450 context_(context),
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1451 instancePublicId_(instancePublicId)
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1452 {
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1453 accessor_.reset(new ParsedDicomCache::Accessor(context_.dicomCache_, instancePublicId));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1454
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1455 if (!accessor_->IsValid())
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1456 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1457 accessor_.reset(NULL);
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1458
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1459 // Throttle to avoid loading several large DICOM files simultaneously
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1460 largeDicomLocker_.reset(new Semaphore::Locker(context.largeDicomThrottler_));
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1461
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1462 context_.ReadDicom(buffer_, instancePublicId_);
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1463
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1464 // Release the throttle if loading "small" DICOM files (under
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1465 // 50MB, which is an arbitrary value)
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1466 if (buffer_.size() < 50 * 1024 * 1024)
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1467 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1468 largeDicomLocker_.reset(NULL);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1469 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1470
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1471 dicom_.reset(new ParsedDicomFile(buffer_));
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1472 dicomSize_ = buffer_.size();
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1473 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1474
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1475 assert(accessor_.get() != NULL ||
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1476 dicom_.get() != NULL);
778
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1477 }
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1478
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1479
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1480 ServerContext::DicomCacheLocker::~DicomCacheLocker()
aebf0071020e refactoring of the mutex for the dicom cache
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 774
diff changeset
1481 {
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1482 if (dicom_.get() != NULL)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1483 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1484 try
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1485 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1486 context_.dicomCache_.Acquire(instancePublicId_, dicom_.release(), dicomSize_);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1487 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1488 catch (OrthancException&)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1489 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1490 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1491 }
285
4031f73fe0e4 access to the raw dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1492 }
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1493
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 291
diff changeset
1494
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1495 ParsedDicomFile& ServerContext::DicomCacheLocker::GetDicom() const
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1496 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1497 if (dicom_.get() != NULL)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1498 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1499 return *dicom_;
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1500 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1501 else
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1502 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1503 assert(accessor_.get() != NULL);
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1504 return accessor_->GetDicom();
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1505 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1506 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1507
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1508 const std::string& ServerContext::DicomCacheLocker::GetBuffer()
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1509 {
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1510 if (buffer_.size() > 0)
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1511 {
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1512 return buffer_;
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1513 }
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1514 else
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1515 {
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1516 context_.ReadDicom(buffer_, instancePublicId_);
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1517 return buffer_;
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1518 }
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1519 }
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1520
695
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1521 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5)
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1522 {
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1523 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no");
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
1524 storeMD5_ = storeMD5;
695
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1525 }
c59bc408fb10 parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1526
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1527
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1528 bool ServerContext::AddAttachment(int64_t& newRevision,
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1529 const std::string& resourceId,
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1530 ResourceType resourceType,
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1531 FileContentType attachmentType,
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1532 const void* data,
4627
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1533 size_t size,
f7d5372b59b3 handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4623
diff changeset
1534 bool hasOldRevision,
4640
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4629
diff changeset
1535 int64_t oldRevision,
66109d24d26e "ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4629
diff changeset
1536 const std::string& oldMD5)
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1537 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1538 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1539
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
1540 // TODO Should we use "gzip" instead?
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
1541 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None);
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1542
5184
dd085f7e7e71 cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5183
diff changeset
1543 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry());
5807
8279eaab0d1d merged default -> attach-custom-data
Alain Mazy <am@orthanc.team>
parents: 5080 5767
diff changeset
1544
5080
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1545 std::string uuid = Toolbox::GenerateUuid();
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1546 std::string customData;
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1547
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1548 assert(attachmentType != FileContentType_Dicom && attachmentType != FileContentType_DicomUntilPixelData); // this method can not be used to store instances
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1549
d7274e43ea7c allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
1550 FileInfo attachment = accessor.WriteAttachment(customData, resourceId, resourceType, data, size, attachmentType, compression, storeMD5_, uuid);
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1551
4752
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1552 try
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1553 {
4752
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1554 StoreStatus status = index_.AddAttachment(
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1555 newRevision, attachment, resourceId, hasOldRevision, oldRevision, oldMD5);
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1556 if (status != StoreStatus_Success)
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1557 {
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1558 accessor.Remove(attachment);
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1559 return false;
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1560 }
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1561 else
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1562 {
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1563 return true;
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1564 }
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1565 }
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1566 catch (OrthancException&)
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1567 {
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1568 // Fixed in Orthanc 1.9.6
1549
e5e975e9b738 refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1548
diff changeset
1569 accessor.Remove(attachment);
4752
2f35e6b765e5 Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4694
diff changeset
1570 throw;
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1571 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
1572 }
1145
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1573
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1574
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1575 bool ServerContext::DeleteResource(Json::Value& remainingAncestor,
1145
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1576 const std::string& uuid,
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1577 ResourceType expectedType)
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1578 {
2507
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1579 if (expectedType == ResourceType_Instance)
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1580 {
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1581 // remove the file from the DicomCache
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1582 dicomCache_.Invalidate(uuid);
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1583 }
99116ed6f38c invalidate DicomCache when deleting instance
amazy
parents: 2447
diff changeset
1584
4694
da1edb7d6332 "/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4677
diff changeset
1585 return index_.DeleteResource(remainingAncestor, uuid, expectedType);
1145
0479d02c6778 Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1134
diff changeset
1586 }
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1165
diff changeset
1587
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1165
diff changeset
1588
1198
1169528a9a5f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1189
diff changeset
1589 void ServerContext::SignalChange(const ServerIndexChange& change)
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1165
diff changeset
1590 {
4457
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1591 if (change.GetResourceType() == ResourceType_Instance &&
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1592 change.GetChangeType() == ChangeType_Deleted)
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1593 {
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1594 dicomCache_.Invalidate(change.GetPublicId());
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1595 }
789676a8c96a Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4437
diff changeset
1596
1436
0a3e3be59094 uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1434
diff changeset
1597 pendingChanges_.Enqueue(change.Clone());
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1165
diff changeset
1598 }
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1599
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1600
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2135
diff changeset
1601 #if ORTHANC_ENABLE_PLUGINS == 1
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1602 void ServerContext::SetPlugins(OrthancPlugins& plugins)
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1603 {
3947
cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents: 3945
diff changeset
1604 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_);
1459
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
1605
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1606 plugins_ = &plugins;
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1607
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1608 // TODO REFACTOR THIS
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1609 listeners_.clear();
2738
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
1610 listeners_.push_back(ServerListener(luaListener_, "Lua"));
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1611 listeners_.push_back(ServerListener(plugins, "plugin"));
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1612 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1613
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1614
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1615 void ServerContext::ResetPlugins()
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1616 {
3947
cf6eb4fc6841 fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents: 3945
diff changeset
1617 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_);
1459
040d58493998 security
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1456
diff changeset
1618
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1619 plugins_ = NULL;
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1620
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1621 // TODO REFACTOR THIS
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1622 listeners_.clear();
2738
3a55b77339ff fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2716
diff changeset
1623 listeners_.push_back(ServerListener(luaListener_, "Lua"));
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1624 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1625
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1626
1434
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1433
diff changeset
1627 const OrthancPlugins& ServerContext::GetPlugins() const
1232
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1628 {
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1629 if (HasPlugins())
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1630 {
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1631 return *plugins_;
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1632 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1633 else
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1634 {
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1635 throw OrthancException(ErrorCode_InternalError);
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1636 }
f1c01451a8ee Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
1637 }
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1638
1741
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1639 OrthancPlugins& ServerContext::GetPlugins()
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1640 {
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1641 if (HasPlugins())
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1642 {
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1643 return *plugins_;
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1644 }
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1645 else
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1646 {
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1647 throw OrthancException(ErrorCode_InternalError);
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1648 }
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1649 }
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1701
diff changeset
1650
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1651 #endif
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1652
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1653
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1654 bool ServerContext::HasPlugins() const
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1655 {
2136
dd609a99d39a uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2135
diff changeset
1656 #if ORTHANC_ENABLE_PLUGINS == 1
1632
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1657 return (plugins_ != NULL);
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1658 #else
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1659 return false;
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1660 #endif
eb8fbcf008b5 fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
1661 }
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1662
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1663
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1664 void ServerContext::Apply(ILookupVisitor& visitor,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1665 const DatabaseLookup& lookup,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1666 ResourceType queryLevel,
5683
0c218d90096e moved handling of labels out of DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5669
diff changeset
1667 const std::set<std::string>& labels,
0c218d90096e moved handling of labels out of DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5669
diff changeset
1668 LabelsConstraint labelsConstraint,
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1669 size_t since,
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1670 size_t limit)
4196
37310bb1cd30 Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4143
diff changeset
1671 {
5688
d0a264b803f1 first implementation of database paging
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5686
diff changeset
1672 const uint64_t databaseLimit = GetDatabaseLimits(queryLevel);
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1673
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1674 std::vector<std::string> resources, instances;
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1675 const DicomTagConstraint* dicomModalitiesConstraint = NULL;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1676
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1677 bool hasModalitiesInStudyLookup = (queryLevel == ResourceType_Study &&
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1678 lookup.GetConstraint(dicomModalitiesConstraint, DICOM_TAG_MODALITIES_IN_STUDY) &&
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1679 ((dicomModalitiesConstraint->GetConstraintType() == ConstraintType_Equal && !dicomModalitiesConstraint->GetValue().empty()) ||
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1680 (dicomModalitiesConstraint->GetConstraintType() == ConstraintType_List && !dicomModalitiesConstraint->GetValues().empty())));
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1681
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1682 std::unique_ptr<DatabaseLookup> fastLookup(lookup.Clone());
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1683
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1684 if (hasModalitiesInStudyLookup)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1685 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1686 fastLookup->RemoveConstraint(DICOM_TAG_MODALITIES_IN_STUDY);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1687 }
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1688
5714
2b05428843d2 removed dangerous overload of ResourceFinder::Execute()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5690
diff changeset
1689 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1);
2b05428843d2 removed dangerous overload of ResourceFinder::Execute()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5690
diff changeset
1690 GetIndex().ApplyLookupResources(resources, &instances, *fastLookup, queryLevel, labels, labelsConstraint, lookupLimit);
3025
039a9d262d64 preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3021
diff changeset
1691
3033
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3031
diff changeset
1692 bool complete = (databaseLimit == 0 ||
3204
8792867b739a fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3175
diff changeset
1693 resources.size() <= databaseLimit);
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1694
3005
8265a6b56100 DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3003
diff changeset
1695 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size();
3003
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1696
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1697 /**
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1698 * "resources" contains the Orthanc ID of the resource at level
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1699 * "queryLevel", "instances" contains one the Orthanc ID of one
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1700 * sample instance from this resource.
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1701 **/
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1702 assert(resources.size() == instances.size());
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1703
3001
7695a9c81099 refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1704 size_t countResults = 0;
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1705 size_t skipped = 0;
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1706
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1707 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded();
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1708
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1709 for (size_t i = 0; i < instances.size(); i++)
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1710 {
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1711 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1712 // the disk if only "main DICOM tags" are to be returned
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1713
5058
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
1714 boost::shared_ptr<Json::Value> dicomAsJson;
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1715
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1716 bool hasOnlyMainDicomTags;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1717 DicomMap dicom;
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
1718 DicomMap allMainDicomTagsFromDB;
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1719
5058
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
1720 if (!IsStorageAccessAllowedForAnswers(findStorageAccessMode_)
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
1721 || fastLookup->HasOnlyMainDicomTags())
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1722 {
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1723 // Case (1): The main DICOM tags, as stored in the database,
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1724 // are sufficient to look for match
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1725
4944
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
1726 if (!GetIndex().GetAllMainDicomTags(allMainDicomTagsFromDB, instances[i]))
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1727 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1728 // The instance has been removed during the execution of the
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1729 // lookup, ignore it
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1730 continue;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1731 }
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1732
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1733 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1734 // level of interest for the query
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1735 switch (queryLevel)
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1736 {
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1737 // WARNING: Don't reorder cases below, and don't add "break"
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1738 case ResourceType_Instance:
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
1739 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Instance);
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1740
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1741 case ResourceType_Series:
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
1742 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Series);
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1743
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1744 case ResourceType_Study:
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
1745 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Study);
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1746
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1747 case ResourceType_Patient:
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
1748 dicom.MergeMainDicomTags(allMainDicomTagsFromDB, ResourceType_Patient);
3679
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1749 break;
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1750
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1751 default:
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1752 throw OrthancException(ErrorCode_InternalError);
6358923d3ced C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3677
diff changeset
1753 }
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1754
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1755 hasOnlyMainDicomTags = true;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1756 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1757 else
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1758 {
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1759 // Case (2): Need to read the "DICOM-as-JSON" attachment from
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1760 // the storage area
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1761 dicomAsJson.reset(new Json::Value);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1762 ReadDicomAsJson(*dicomAsJson, instances[i]);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1763
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1764 dicom.FromDicomAsJson(*dicomAsJson);
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1765
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1766 // This map contains the entire JSON, i.e. more than the main DICOM tags
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1767 hasOnlyMainDicomTags = false;
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1768 }
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1769
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1770 if (fastLookup->IsMatch(dicom))
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1771 {
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1772 bool isMatch = true;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1773
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1774 if (hasModalitiesInStudyLookup)
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
1775 {
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1776 std::set<DicomTag> requestedTags;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1777 requestedTags.insert(DICOM_TAG_MODALITIES_IN_STUDY);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1778 ExpandedResource resource;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1779 ComputeStudyTags(resource, *this, resources[i], requestedTags);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1780
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1781 std::vector<std::string> modalities;
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
1782 Toolbox::TokenizeString(modalities, resource.GetMainDicomTags().GetValue(DICOM_TAG_MODALITIES_IN_STUDY).GetContent(), '\\');
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1783 bool hasAtLeastOneModalityMatching = false;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1784 for (size_t m = 0; m < modalities.size(); m++)
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1785 {
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1786 hasAtLeastOneModalityMatching |= dicomModalitiesConstraint->IsMatch(modalities[m]);
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1787 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1788
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1789 isMatch = isMatch && hasAtLeastOneModalityMatching;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1790 // copy the value of ModalitiesInStudy such that it can be reused to build the answer
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
1791 allMainDicomTagsFromDB.SetValue(DICOM_TAG_MODALITIES_IN_STUDY, resource.GetMainDicomTags().GetValue(DICOM_TAG_MODALITIES_IN_STUDY));
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1792 }
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1793
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1794 if (isMatch)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1795 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1796 if (skipped < since)
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1797 {
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1798 skipped++;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1799 }
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1800 else if (limit != 0 &&
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1801 countResults >= limit)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1802 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1803 // Too many results, don't mark as complete
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1804 complete = false;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1805 break;
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1806 }
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1807 else
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1808 {
5058
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
1809 if (IsStorageAccessAllowedForAnswers(findStorageAccessMode_) &&
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1810 dicomAsJson.get() == NULL &&
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1811 isDicomAsJsonNeeded)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1812 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1813 dicomAsJson.reset(new Json::Value);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1814 ReadDicomAsJson(*dicomAsJson, instances[i]);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1815 }
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1816
4978
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1817 if (hasOnlyMainDicomTags)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1818 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1819 // This is Case (1): The variable "dicom" only contains the main DICOM tags
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1820 visitor.Visit(resources[i], instances[i], allMainDicomTagsFromDB, dicomAsJson.get());
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1821 }
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1822 else
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1823 {
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1824 // Remove the non-main DICOM tags from "dicom" if Case (2)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1825 // was used, for consistency with Case (1)
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1826
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1827 DicomMap mainDicomTags;
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1828 mainDicomTags.ExtractMainDicomTags(dicom);
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1829 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get());
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1830 }
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1831
2cfa50d8eb60 Speed-up handling of DicomModalitiesInStudy in C-Find and tools/find queries
Alain Mazy <am@osimis.io>
parents: 4977
diff changeset
1832 countResults ++;
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
1833 }
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1834 }
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1835 }
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1836 }
3001
7695a9c81099 refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2965
diff changeset
1837
3003
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1838 if (complete)
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1839 {
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1840 visitor.MarkAsComplete();
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1841 }
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1842
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
1843 LOG(INFO) << "Number of matching resources: " << countResults;
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1844 }
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1741
diff changeset
1845
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1846 bool ServerContext::LookupOrReconstructMetadata(std::string& target,
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1847 const std::string& publicId,
4460
6831de40acd9 New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4457
diff changeset
1848 ResourceType level,
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1849 MetadataType metadata)
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1850 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1851 // This is a backwards-compatibility function, that can
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1852 // reconstruct metadata that were not generated by an older
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1853 // release of Orthanc
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1854
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1855 if (metadata == MetadataType_Instance_SopClassUid ||
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1856 metadata == MetadataType_Instance_TransferSyntax)
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1857 {
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1858 int64_t revision; // Ignored
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1859 if (index_.LookupMetadata(target, revision, publicId, level, metadata))
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1860 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1861 return true;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1862 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1863 else
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1864 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1865 // These metadata are mandatory in DICOM instances, and were
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1866 // introduced in Orthanc 1.2.0. The fact that
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1867 // "LookupMetadata()" has failed indicates that this database
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1868 // comes from an older release of Orthanc.
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1869
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1870 DicomTag tag(0, 0);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1871
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1872 switch (metadata)
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1873 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1874 case MetadataType_Instance_SopClassUid:
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1875 tag = DICOM_TAG_SOP_CLASS_UID;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1876 break;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1877
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1878 case MetadataType_Instance_TransferSyntax:
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1879 tag = DICOM_TAG_TRANSFER_SYNTAX_UID;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1880 break;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1881
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1882 default:
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1883 throw OrthancException(ErrorCode_InternalError);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1884 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1885
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1886 Json::Value dicomAsJson;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1887 ReadDicomAsJson(dicomAsJson, publicId);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1888
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1889 DicomMap tags;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1890 tags.FromDicomAsJson(dicomAsJson);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1891
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1892 const DicomValue* value = tags.TestAndGetValue(tag);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1893
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1894 if (value != NULL &&
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1895 !value->IsNull() &&
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1896 !value->IsBinary())
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1897 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1898 target = value->GetContent();
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1899
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1900 // Store for reuse
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1901 index_.OverwriteMetadata(publicId, metadata, target);
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1902 return true;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1903 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1904 else
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1905 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1906 // Should never happen
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1907 return false;
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1908 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1909 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1910 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1911 else
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1912 {
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1913 // No backward
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1914 int64_t revision; // Ignored
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4607
diff changeset
1915 return index_.LookupMetadata(target, revision, publicId, level, metadata);
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1916 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1917 }
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1918
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3012
diff changeset
1919
2626
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1920 void ServerContext::AddChildInstances(SetOfInstancesJob& job,
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1921 const std::string& publicId)
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1922 {
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1923 std::list<std::string> instances;
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1924 GetIndex().GetChildInstances(instances, publicId);
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1925
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1926 job.Reserve(job.GetInstancesCount() + instances.size());
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1927
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1928 for (std::list<std::string>::const_iterator
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1929 it = instances.begin(); it != instances.end(); ++it)
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1930 {
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1931 job.AddInstance(*it);
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1932 }
e09021ddc00d cleanup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
1933 }
2940
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1934
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1935
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1936 void ServerContext::SignalUpdatedModalities()
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1937 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1938 #if ORTHANC_ENABLE_PLUGINS == 1
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1939 if (HasPlugins())
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1940 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1941 GetPlugins().SignalUpdatedModalities();
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1942 }
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1943 #endif
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1944 }
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1945
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1946
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1947 void ServerContext::SignalUpdatedPeers()
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1948 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1949 #if ORTHANC_ENABLE_PLUGINS == 1
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1950 if (HasPlugins())
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1951 {
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1952 GetPlugins().SignalUpdatedPeers();
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1953 }
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1954 #endif
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2925
diff changeset
1955 }
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1956
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1957
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1958 IStorageCommitmentFactory::ILookupHandler*
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1959 ServerContext::CreateStorageCommitment(const std::string& jobId,
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1960 const std::string& transactionUid,
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1961 const std::vector<std::string>& sopClassUids,
3662
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1962 const std::vector<std::string>& sopInstanceUids,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1963 const std::string& remoteAet,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1964 const std::string& calledAet)
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1965 {
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1966 #if ORTHANC_ENABLE_PLUGINS == 1
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1967 if (HasPlugins())
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1968 {
3662
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1969 return GetPlugins().CreateStorageCommitment(
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
1970 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet);
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1971 }
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1972 #endif
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1973
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1974 return NULL;
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
1975 }
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1976
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
1977
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1978
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1979
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1980
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1981 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId,
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1982 unsigned int frameIndex)
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
1983 {
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1984 ServerContext::DicomCacheLocker locker(*this, publicId);
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1985 std::unique_ptr<ImageAccessor> decoded(DecodeDicomFrame(locker.GetDicom(), locker.GetBuffer().c_str(), locker.GetBuffer().size(), frameIndex));
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1986
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1987 if (decoded.get() == NULL)
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1988 {
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1989 OrthancConfiguration::ReaderLock configLock;
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1990 if (configLock.GetConfiguration().IsWarningEnabled(Warnings_003_DecoderFailure))
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1991 {
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1992 LOG(WARNING) << "W003: Unable to decode frame " << frameIndex << " from instance " << publicId;
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1993 }
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1994 return NULL;
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1995 }
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1996
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1997 return decoded.release();
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1998 }
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
1999
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2000
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2001 ImageAccessor* ServerContext::DecodeDicomFrame(const ParsedDicomFile& parsedDicom,
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2002 const void* buffer, // actually the buffer that is the source of the ParsedDicomFile
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2003 size_t size,
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2004 unsigned int frameIndex)
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2005 {
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2006 std::unique_ptr<ImageAccessor> decoded;
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2007
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
2008 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before)
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
2009 {
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2010 // Use Orthanc's built-in decoder
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2011
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2012 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2013 {
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2014 decoded.reset(parsedDicom.DecodeFrame(frameIndex));
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2015 if (decoded.get() != NULL)
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2016 {
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2017 return decoded.release();
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2018 }
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2019 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2020 catch (OrthancException& e)
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2021 { // ignore, we'll try other alternatives
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
2022 }
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
2023 }
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2024
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2025 #if ORTHANC_ENABLE_PLUGINS == 1
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2026 if (HasPlugins() &&
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2027 GetPlugins().HasCustomImageDecoder())
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2028 {
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2029 try
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2030 {
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2031 decoded.reset(GetPlugins().Decode(buffer, size, frameIndex));
4265
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2032 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2033 catch (OrthancException& e)
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2034 {
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2035 }
f9eaf14d3d19 Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4218
diff changeset
2036
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2037 if (decoded.get() != NULL)
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2038 {
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2039 return decoded.release();
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2040 }
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
2041 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2042 {
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2043 LOG(INFO) << "The installed image decoding plugins cannot handle an image, "
3930
b99acc213937 transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3928
diff changeset
2044 << "fallback to the built-in DCMTK decoder";
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2045 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2046 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2047 #endif
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2048
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
2049 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2050 {
5742
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2051 try
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2052 {
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2053 decoded.reset(parsedDicom.DecodeFrame(frameIndex));
5742
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2054 if (decoded.get() != NULL)
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2055 {
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2056 return decoded.release();
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2057 }
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2058 }
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2059 catch (OrthancException& e)
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2060 {
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2061 LOG(INFO) << e.GetDetails();
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2062 }
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2063 }
5742
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2064
5767
b4fbd9d2c907 fix compilation if plugins are disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5743
diff changeset
2065 #if ORTHANC_ENABLE_PLUGINS == 1
5742
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2066 if (HasPlugins() && GetPlugins().HasCustomTranscoder())
3931
e6606d3ec892 new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3930
diff changeset
2067 {
5742
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2068 LOG(INFO) << "The plugins and built-in image decoders failed to decode a frame, "
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2069 << "trying to transcode the file to LittleEndianExplicit using the plugins.";
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2070 DicomImage explicitTemporaryImage;
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2071 DicomImage source;
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2072 std::set<DicomTransferSyntax> allowedSyntaxes;
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2073
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2074 source.SetExternalBuffer(buffer, size);
5742
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2075 allowedSyntaxes.insert(DicomTransferSyntax_LittleEndianExplicit);
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2076
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2077 if (Transcode(explicitTemporaryImage, source, allowedSyntaxes, true))
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2078 {
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2079 std::unique_ptr<ParsedDicomFile> file(explicitTemporaryImage.ReleaseAsParsedDicomFile());
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2080 return file->DecodeFrame(frameIndex);
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2081 }
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2082 }
5767
b4fbd9d2c907 fix compilation if plugins are disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5743
diff changeset
2083 #endif
5742
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2084
078b724dcbf8 if frame decoding fails, transcode to LittleEndianExplicit using plugins and decode with built-in decoder
Alain Mazy <am@orthanc.team>
parents: 5683
diff changeset
2085 return NULL;
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2086 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2087
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2088
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2089 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom,
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2090 unsigned int frameIndex)
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2091 {
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2092 return DecodeDicomFrame(dicom.GetParsedDicomFile(),
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2093 dicom.GetBufferData(),
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2094 dicom.GetBufferSize(),
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2095 frameIndex);
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2096
3928
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2097 }
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2098
4cdc875510d1 ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3913
diff changeset
2099
3980
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
2100 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom,
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
2101 size_t size,
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
2102 unsigned int frameIndex)
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
2103 {
5743
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2104 std::unique_ptr<ParsedDicomFile> instance(new ParsedDicomFile(dicom, size));
8bb3f2fca242 refactored ServerContext::DecodeDicomFrame to have a single implementation
Alain Mazy <am@orthanc.team>
parents: 5742
diff changeset
2105 return DecodeDicomFrame(*instance, dicom, size, frameIndex);
3980
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
2106 }
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
2107
e42f5445d20d Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3951
diff changeset
2108
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2109 void ServerContext::StoreWithTranscoding(std::string& sopClassUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2110 std::string& sopInstanceUid,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2111 DicomStoreUserConnection& connection,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2112 const std::string& dicom,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2113 bool hasMoveOriginator,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2114 const std::string& moveOriginatorAet,
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2115 uint16_t moveOriginatorId)
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2116 {
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2117 const void* data = dicom.empty() ? NULL : dicom.c_str();
5438
7a20ee948676 Added a new 'Telemis' manufacturer for DicomModalities
Alain Mazy <am@osimis.io>
parents: 5436
diff changeset
2118 const RemoteModalityParameters& modality = connection.GetParameters().GetRemoteModality();
7a20ee948676 Added a new 'Telemis' manufacturer for DicomModalities
Alain Mazy <am@osimis.io>
parents: 5436
diff changeset
2119
3911
0ef7f4528be2 renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3910
diff changeset
2120 if (!transcodeDicomProtocol_ ||
5438
7a20ee948676 Added a new 'Telemis' manufacturer for DicomModalities
Alain Mazy <am@osimis.io>
parents: 5436
diff changeset
2121 !modality.IsTranscodingAllowed())
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2122 {
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2123 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(),
5442
ac68a4383e51 improved C-Store negotiation and logging
Alain Mazy <am@osimis.io>
parents: 5438
diff changeset
2124 hasMoveOriginator, moveOriginatorAet, moveOriginatorId);
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2125 }
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2126 else
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2127 {
4465
fe774d8e904b New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
2128 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), preferredTransferSyntax_,
5442
ac68a4383e51 improved C-Store negotiation and logging
Alain Mazy <am@osimis.io>
parents: 5438
diff changeset
2129 hasMoveOriginator, moveOriginatorAet, moveOriginatorId);
3894
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2130 }
8f7ad4989fec transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3839
diff changeset
2131 }
3930
b99acc213937 transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3928
diff changeset
2132
b99acc213937 transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3928
diff changeset
2133
5426
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2134 bool ServerContext::TranscodeWithCache(std::string& target,
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2135 const std::string& source,
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2136 const std::string& sourceInstanceId,
5427
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
2137 const std::string& attachmentId,
5426
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2138 DicomTransferSyntax targetSyntax)
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2139 {
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2140 StorageCache::Accessor cacheAccessor(storageCache_);
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2141
5427
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
2142 if (!cacheAccessor.FetchTranscodedInstance(target, attachmentId, targetSyntax))
5426
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2143 {
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2144 IDicomTranscoder::DicomImage sourceDicom;
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2145 sourceDicom.SetExternalBuffer(source);
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2146
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2147 IDicomTranscoder::DicomImage targetDicom;
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2148 std::set<DicomTransferSyntax> syntaxes;
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2149 syntaxes.insert(targetSyntax);
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2150
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2151 if (Transcode(targetDicom, sourceDicom, syntaxes, true))
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2152 {
5427
111e21b4f8bc fix transcoded instance caching
Alain Mazy <am@osimis.io>
parents: 5426
diff changeset
2153 cacheAccessor.AddTranscodedInstance(attachmentId, targetSyntax, reinterpret_cast<const char*>(targetDicom.GetBufferData()), targetDicom.GetBufferSize());
5426
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2154 target = std::string(reinterpret_cast<const char*>(targetDicom.GetBufferData()), targetDicom.GetBufferSize());
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2155 return true;
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2156 }
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2157
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2158 return false;
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2159 }
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2160
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2161 return true;
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2162 }
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2163
c65e036d649b StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents: 5420
diff changeset
2164
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2165 bool ServerContext::Transcode(DicomImage& target,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2166 DicomImage& source /* in, "GetParsed()" possibly modified */,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2167 const std::set<DicomTransferSyntax>& allowedSyntaxes,
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2168 bool allowNewSopInstanceUid)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2169 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2170 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2171 {
3951
5fe8c6d3212e removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3947
diff changeset
2172 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid))
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2173 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2174 return true;
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2175 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2176 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2177
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2178 #if ORTHANC_ENABLE_PLUGINS == 1
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2179 if (HasPlugins() &&
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2180 GetPlugins().HasCustomTranscoder())
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2181 {
3951
5fe8c6d3212e removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3947
diff changeset
2182 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid))
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2183 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2184 return true;
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2185 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2186 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2187 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2188 LOG(INFO) << "The installed transcoding plugins cannot handle an image, "
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2189 << "fallback to the built-in DCMTK transcoder";
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2190 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2191 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2192 #endif
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2193
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2194 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After)
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2195 {
3951
5fe8c6d3212e removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3947
diff changeset
2196 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid);
3944
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2197 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2198 else
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2199 {
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2200 return false;
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2201 }
aae045f802f4 preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3941
diff changeset
2202 }
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2203
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
2204 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2205 {
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2206 static const std::string redactedContent = "*** POTENTIAL PHI ***";
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
2207 static const std::string emptyContent = "";
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2208
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2209 const DicomTag& tag = element.GetTag();
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
2210 if (element.GetValue().IsSequence())
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
2211 {
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
2212 return emptyContent;
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
2213 }
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
2214
4789
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4752
diff changeset
2215 if (deidentifyLogs_ &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4752
diff changeset
2216 !element.GetValue().GetContent().empty() &&
51ec061516c9 Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4752
diff changeset
2217 logsDeidentifierRules_.IsAlteredTag(tag))
4375
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2218 {
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2219 return redactedContent;
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2220 }
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2221 else
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2222 {
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2223 return element.GetValue().GetContent();
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2224 }
208029732d51 New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents: 4274
diff changeset
2225 }
4473
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2226
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2227
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2228 void ServerContext::GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes)
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2229 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2230 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2231 syntaxes = acceptedTransferSyntaxes_;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2232 }
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2233
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2234
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2235 void ServerContext::SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes)
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2236 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2237 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2238 acceptedTransferSyntaxes_ = syntaxes;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2239 }
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2240
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2241
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2242 bool ServerContext::IsUnknownSopClassAccepted()
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2243 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2244 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2245 return isUnknownSopClassAccepted_;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2246 }
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2247
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2248
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2249 void ServerContext::SetUnknownSopClassAccepted(bool accepted)
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2250 {
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2251 boost::mutex::scoped_lock lock(dynamicOptionsMutex_);
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2252 isUnknownSopClassAccepted_ = accepted;
68f52897c119 new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4465
diff changeset
2253 }
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2254
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2255
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2256 static void SerializeExpandedResource(Json::Value& target,
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2257 const ExpandedResource& resource,
4936
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4935
diff changeset
2258 DicomToJsonFormat format,
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2259 const std::set<DicomTag>& requestedTags,
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2260 ExpandResourceFlags expandFlags)
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2261 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2262 target = Json::objectValue;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2263
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2264 target["Type"] = GetResourceTypeText(resource.GetLevel(), false, true);
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2265 target["ID"] = resource.GetPublicId();
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2266
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2267 if (!resource.parentId_.empty())
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2268 {
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2269 switch (resource.GetLevel())
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2270 {
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2271 case ResourceType_Patient:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2272 break;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2273
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2274 case ResourceType_Study:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2275 target["ParentPatient"] = resource.parentId_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2276 break;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2277
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2278 case ResourceType_Series:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2279 target["ParentStudy"] = resource.parentId_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2280 break;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2281
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2282 case ResourceType_Instance:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2283 target["ParentSeries"] = resource.parentId_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2284 break;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2285
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2286 default:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2287 throw OrthancException(ErrorCode_InternalError);
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2288 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2289 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2290
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2291 if ((expandFlags & ExpandResourceFlags_IncludeChildren) != 0)
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2292 {
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2293 switch (resource.GetLevel())
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2294 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2295 case ResourceType_Patient:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2296 case ResourceType_Study:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2297 case ResourceType_Series:
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2298 {
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2299 Json::Value c = Json::arrayValue;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2300
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2301 for (std::list<std::string>::const_iterator
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2302 it = resource.childrenIds_.begin(); it != resource.childrenIds_.end(); ++it)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2303 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2304 c.append(*it);
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2305 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2306
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2307 if (resource.GetLevel() == ResourceType_Patient)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2308 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2309 target["Studies"] = c;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2310 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2311 else if (resource.GetLevel() == ResourceType_Study)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2312 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2313 target["Series"] = c;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2314 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2315 else
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2316 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2317 target["Instances"] = c;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2318 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2319 break;
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2320 }
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2321
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2322 case ResourceType_Instance:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2323 break;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2324
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2325 default:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2326 throw OrthancException(ErrorCode_InternalError);
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2327 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2328 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2329
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2330 if ((expandFlags & ExpandResourceFlags_IncludeMetadata) != 0)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2331 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2332 switch (resource.GetLevel())
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2333 {
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2334 case ResourceType_Patient:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2335 case ResourceType_Study:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2336 break;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2337
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2338 case ResourceType_Series:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2339 if (resource.expectedNumberOfInstances_ < 0)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2340 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2341 target["ExpectedNumberOfInstances"] = Json::nullValue;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2342 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2343 else
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2344 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2345 target["ExpectedNumberOfInstances"] = resource.expectedNumberOfInstances_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2346 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2347 target["Status"] = resource.status_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2348 break;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2349
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2350 case ResourceType_Instance:
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2351 {
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2352 target["FileSize"] = static_cast<unsigned int>(resource.fileSize_);
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2353 target["FileUuid"] = resource.fileUuid_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2354
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2355 if (resource.indexInSeries_ < 0)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2356 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2357 target["IndexInSeries"] = Json::nullValue;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2358 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2359 else
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2360 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2361 target["IndexInSeries"] = resource.indexInSeries_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2362 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2363
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2364 break;
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2365 }
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2366
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2367 default:
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2368 throw OrthancException(ErrorCode_InternalError);
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2369 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2370
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2371 if (!resource.anonymizedFrom_.empty())
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2372 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2373 target["AnonymizedFrom"] = resource.anonymizedFrom_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2374 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2375
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2376 if (!resource.modifiedFrom_.empty())
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2377 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2378 target["ModifiedFrom"] = resource.modifiedFrom_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2379 }
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2380 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2381
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2382 if (resource.GetLevel() == ResourceType_Patient ||
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2383 resource.GetLevel() == ResourceType_Study ||
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2384 resource.GetLevel() == ResourceType_Series)
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2385 {
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2386 if ((expandFlags & ExpandResourceFlags_IncludeIsStable) != 0)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2387 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2388 target["IsStable"] = resource.isStable_;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2389 }
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2390
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2391 if (!resource.lastUpdate_.empty())
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2392 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2393 target["LastUpdate"] = resource.lastUpdate_;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2394 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2395 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2396
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2397 if ((expandFlags & ExpandResourceFlags_IncludeMainDicomTags) != 0)
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2398 {
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2399 // serialize tags
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2400
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2401 static const char* const MAIN_DICOM_TAGS = "MainDicomTags";
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2402 static const char* const PATIENT_MAIN_DICOM_TAGS = "PatientMainDicomTags";
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2403
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2404 DicomMap mainDicomTags;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2405 resource.GetMainDicomTags().ExtractResourceInformation(mainDicomTags, resource.GetLevel());
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2406
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2407 target[MAIN_DICOM_TAGS] = Json::objectValue;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2408 FromDcmtkBridge::ToJson(target[MAIN_DICOM_TAGS], mainDicomTags, format);
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2409
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2410 if (resource.GetLevel() == ResourceType_Study)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2411 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2412 DicomMap patientMainDicomTags;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2413 resource.GetMainDicomTags().ExtractPatientInformation(patientMainDicomTags);
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2414
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2415 target[PATIENT_MAIN_DICOM_TAGS] = Json::objectValue;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2416 FromDcmtkBridge::ToJson(target[PATIENT_MAIN_DICOM_TAGS], patientMainDicomTags, format);
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2417 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2418
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2419 if (requestedTags.size() > 0)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2420 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2421 static const char* const REQUESTED_TAGS = "RequestedTags";
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2422
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2423 DicomMap tags;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2424 resource.GetMainDicomTags().ExtractTags(tags, requestedTags);
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2425
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2426 target[REQUESTED_TAGS] = Json::objectValue;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2427 FromDcmtkBridge::ToJson(target[REQUESTED_TAGS], tags, format);
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2428
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2429 }
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2430 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2431
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2432 if ((expandFlags & ExpandResourceFlags_IncludeLabels) != 0)
5221
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2433 {
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2434 Json::Value labels = Json::arrayValue;
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2435
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2436 for (std::set<std::string>::const_iterator it = resource.labels_.begin(); it != resource.labels_.end(); ++it)
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2437 {
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2438 labels.append(*it);
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2439 }
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2440
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2441 target["Labels"] = labels;
d0f7c742d397 started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5220
diff changeset
2442 }
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2443
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2444 // new in Orthanc 1.12.4
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2445 if ((expandFlags & ExpandResourceFlags_IncludeAllMetadata) != 0)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2446 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2447 Json::Value metadata = Json::objectValue;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2448
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2449 for (std::map<MetadataType, std::string>::const_iterator it = resource.metadata_.begin(); it != resource.metadata_.end(); ++it)
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2450 {
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2451 metadata[EnumerationToString(it->first)] = it->second;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2452 }
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2453
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2454 target["Metadata"] = metadata;
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2455 }
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2456 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2457
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2458
4944
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2459 static void ComputeInstanceTags(ExpandedResource& resource,
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2460 ServerContext& context,
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2461 const std::string& instancePublicId,
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2462 const std::set<DicomTag>& requestedTags)
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2463 {
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2464 if (requestedTags.count(DICOM_TAG_INSTANCE_AVAILABILITY) > 0)
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2465 {
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2466 resource.GetMainDicomTags().SetValue(DICOM_TAG_INSTANCE_AVAILABILITY, "ONLINE", false);
4944
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2467 resource.missingRequestedTags_.erase(DICOM_TAG_INSTANCE_AVAILABILITY);
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2468 }
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2469 }
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2470
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2471
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2472 static void ComputeSeriesTags(ExpandedResource& resource,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2473 ServerContext& context,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2474 const std::string& seriesPublicId,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2475 const std::set<DicomTag>& requestedTags)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2476 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2477 if (requestedTags.count(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES) > 0)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2478 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2479 ServerIndex& index = context.GetIndex();
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2480 std::list<std::string> instances;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2481
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2482 index.GetChildren(instances, seriesPublicId);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2483
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2484 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2485 boost::lexical_cast<std::string>(instances.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2486 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2487 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2488 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2489
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2490 static void ComputeStudyTags(ExpandedResource& resource,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2491 ServerContext& context,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2492 const std::string& studyPublicId,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2493 const std::set<DicomTag>& requestedTags)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2494 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2495 ServerIndex& index = context.GetIndex();
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2496 std::list<std::string> series;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2497 std::list<std::string> instances;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2498
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2499 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2500 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2501 bool hasModalitiesInStudy = requestedTags.count(DICOM_TAG_MODALITIES_IN_STUDY) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2502 bool hasSopClassesInStudy = requestedTags.count(DICOM_TAG_SOP_CLASSES_IN_STUDY) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2503
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2504 index.GetChildren(series, studyPublicId);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2505
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2506 if (hasModalitiesInStudy)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2507 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2508 std::set<std::string> values;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2509
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2510 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2511 it = series.begin(); it != series.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2512 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2513 DicomMap tags;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2514 index.GetMainDicomTags(tags, *it, ResourceType_Series, ResourceType_Series);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2515
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2516 const DicomValue* value = tags.TestAndGetValue(DICOM_TAG_MODALITY);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2517
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2518 if (value != NULL &&
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2519 !value->IsNull() &&
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2520 !value->IsBinary())
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2521 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2522 values.insert(value->GetContent());
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2523 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2524 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2525
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2526 std::string modalities;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2527 Toolbox::JoinStrings(modalities, values, "\\");
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2528
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2529 resource.GetMainDicomTags().SetValue(DICOM_TAG_MODALITIES_IN_STUDY, modalities, false);
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2530 resource.missingRequestedTags_.erase(DICOM_TAG_MODALITIES_IN_STUDY);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2531 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2532
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2533 if (hasNbRelatedSeries)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2534 {
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2535 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2536 boost::lexical_cast<std::string>(series.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2537 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2538 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2539
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2540 if (hasNbRelatedInstances || hasSopClassesInStudy)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2541 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2542 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2543 it = series.begin(); it != series.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2544 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2545 std::list<std::string> seriesInstancesIds;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2546 index.GetChildren(seriesInstancesIds, *it);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2547
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2548 instances.splice(instances.end(), seriesInstancesIds);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2549 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2550
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2551 if (hasNbRelatedInstances)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2552 {
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2553 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2554 boost::lexical_cast<std::string>(instances.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2555 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2556 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2557
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2558 if (hasSopClassesInStudy)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2559 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2560 std::set<std::string> values;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2561
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2562 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2563 it = instances.begin(); it != instances.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2564 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2565 std::string value;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2566
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2567 if (context.LookupOrReconstructMetadata(value, *it, ResourceType_Instance, MetadataType_Instance_SopClassUid))
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2568 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2569 values.insert(value);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2570 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2571 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2572
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2573 if (values.size() > 0)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2574 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2575 std::string sopClassUids;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2576 Toolbox::JoinStrings(sopClassUids, values, "\\");
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2577 resource.GetMainDicomTags().SetValue(DICOM_TAG_SOP_CLASSES_IN_STUDY, sopClassUids, false);
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2578 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2579
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2580 resource.missingRequestedTags_.erase(DICOM_TAG_SOP_CLASSES_IN_STUDY);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2581 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2582 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2583 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2584
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2585 static void ComputePatientTags(ExpandedResource& resource,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2586 ServerContext& context,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2587 const std::string& patientPublicId,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2588 const std::set<DicomTag>& requestedTags)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2589 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2590 ServerIndex& index = context.GetIndex();
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2591
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2592 std::list<std::string> studies;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2593 std::list<std::string> series;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2594 std::list<std::string> instances;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2595
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2596 bool hasNbRelatedStudies = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2597 bool hasNbRelatedSeries = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2598 bool hasNbRelatedInstances = requestedTags.count(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES) > 0;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2599
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2600 index.GetChildren(studies, patientPublicId);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2601
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2602 if (hasNbRelatedStudies)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2603 {
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2604 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2605 boost::lexical_cast<std::string>(studies.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2606 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2607 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2608
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2609 if (hasNbRelatedSeries || hasNbRelatedInstances)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2610 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2611 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2612 it = studies.begin(); it != studies.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2613 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2614 std::list<std::string> thisSeriesIds;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2615 index.GetChildren(thisSeriesIds, *it);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2616 series.splice(series.end(), thisSeriesIds);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2617 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2618
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2619 if (hasNbRelatedSeries)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2620 {
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2621 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2622 boost::lexical_cast<std::string>(series.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2623 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2624 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2625 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2626
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2627 if (hasNbRelatedInstances)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2628 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2629 for (std::list<std::string>::const_iterator
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2630 it = series.begin(); it != series.end(); ++it)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2631 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2632 std::list<std::string> thisInstancesIds;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2633 index.GetChildren(thisInstancesIds, *it);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2634 instances.splice(instances.end(), thisInstancesIds);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2635 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2636
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2637 resource.GetMainDicomTags().SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2638 boost::lexical_cast<std::string>(instances.size()), false);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2639 resource.missingRequestedTags_.erase(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2640 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2641 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2642
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2643
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2644 static void ComputeTags(ExpandedResource& resource,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2645 ServerContext& context,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2646 const std::string& resourceId,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2647 ResourceType level,
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2648 const std::set<DicomTag>& requestedTags)
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2649 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2650 if (level == ResourceType_Patient
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2651 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Patient))
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2652 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2653 ComputePatientTags(resource, context, resourceId, requestedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2654 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2655
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2656 if (level == ResourceType_Study
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2657 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Study))
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2658 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2659 ComputeStudyTags(resource, context, resourceId, requestedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2660 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2661
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2662 if (level == ResourceType_Series
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2663 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Series))
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2664 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2665 ComputeSeriesTags(resource, context, resourceId, requestedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2666 }
4944
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2667
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2668 if (level == ResourceType_Instance
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2669 && DicomMap::HasComputedTags(resource.missingRequestedTags_, ResourceType_Instance))
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2670 {
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2671 ComputeInstanceTags(resource, context, resourceId, requestedTags);
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2672 }
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2673 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2674
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2675 bool ServerContext::ExpandResource(Json::Value& target,
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2676 const std::string& publicId,
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2677 ResourceType level,
4936
8422e4f99a18 Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
Alain Mazy <am@osimis.io>
parents: 4935
diff changeset
2678 DicomToJsonFormat format,
5058
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
2679 const std::set<DicomTag>& requestedTags,
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
2680 bool allowStorageAccess)
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2681 {
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2682 std::string unusedInstanceId;
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2683 Json::Value* unusedDicomAsJson = NULL;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2684 DicomMap unusedMainDicomTags;
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2685
5058
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
2686 return ExpandResource(target, publicId, unusedMainDicomTags, unusedInstanceId, unusedDicomAsJson, level, format, requestedTags, allowStorageAccess);
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2687 }
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2688
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2689 bool ServerContext::ExpandResource(Json::Value& target,
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2690 const std::string& publicId,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2691 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available)
4939
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2692 const std::string& instanceId, // optional: the id of an instance for the resource (if already available)
5060
e69a3ff39bc5 fix reuse of DicomAsJson between lookup and answers
Alain Mazy <am@osimis.io>
parents: 5058
diff changeset
2693 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available)
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2694 ResourceType level,
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2695 DicomToJsonFormat format,
5058
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
2696 const std::set<DicomTag>& requestedTags,
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
2697 bool allowStorageAccess)
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2698 {
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2699 ExpandedResource resource;
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2700
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2701 if (ExpandResource(resource, publicId, mainDicomTags, instanceId, dicomAsJson, level, requestedTags, ExpandResourceFlags_DefaultExtract, allowStorageAccess))
4939
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2702 {
5568
b0b5546f1b9f find refactor: re-use existing code. /studies?expand is almost fully implemented with new code
Alain Mazy <am@orthanc.team>
parents: 5529
diff changeset
2703 SerializeExpandedResource(target, resource, format, requestedTags, ExpandResourceFlags_DefaultOutput);
4939
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2704 return true;
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2705 }
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2706
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2707 return false;
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2708 }
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2709
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2710 bool ServerContext::ExpandResource(ExpandedResource& resource,
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2711 const std::string& publicId,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2712 const DicomMap& mainDicomTags, // optional: the main dicom tags for the resource (if already available)
4939
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2713 const std::string& instanceId, // optional: the id of an instance for the resource (if already available)
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2714 const Json::Value* dicomAsJson, // optional: the dicom-as-json for the resource (if already available)
4939
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2715 ResourceType level,
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2716 const std::set<DicomTag>& requestedTags,
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2717 ExpandResourceFlags expandFlags,
5058
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 5048
diff changeset
2718 bool allowStorageAccess)
4939
e8a2e145c80e cleanup
Alain Mazy <am@osimis.io>
parents: 4937
diff changeset
2719 {
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2720 // first try to get the tags from what is already available
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2721
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2722 if ((expandFlags & ExpandResourceFlags_IncludeMainDicomTags) &&
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2723 mainDicomTags.GetSize() > 0 &&
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2724 dicomAsJson != NULL)
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2725 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2726
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2727 resource.GetMainDicomTags().Merge(mainDicomTags);
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2728
4984
c8cdf5163cd2 cppcheck
Alain Mazy <am@osimis.io>
parents: 4981
diff changeset
2729 if (dicomAsJson->isObject())
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2730 {
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2731 resource.GetMainDicomTags().FromDicomAsJson(*dicomAsJson);
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2732 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2733
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2734 std::set<DicomTag> retrievedTags;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2735 std::set<DicomTag> missingTags;
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2736 resource.GetMainDicomTags().GetTags(retrievedTags);
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2737
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2738 Toolbox::GetMissingsFromSet(missingTags, requestedTags, retrievedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2739
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2740 // if all possible tags have been read, no need to get them from DB anymore
5669
f690568f0325 Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
parents: 5640
diff changeset
2741 if (missingTags.size() > 0 && DicomMap::HasOnlyComputedTags(missingTags))
f690568f0325 Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
parents: 5640
diff changeset
2742 {
f690568f0325 Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
parents: 5640
diff changeset
2743 resource.missingRequestedTags_ = missingTags;
f690568f0325 Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
parents: 5640
diff changeset
2744 ComputeTags(resource, *this, publicId, level, requestedTags);
f690568f0325 Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
parents: 5640
diff changeset
2745 return true;
f690568f0325 Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
parents: 5640
diff changeset
2746 }
f690568f0325 Fix C-Find queries not returning computed tags in very specific use-cases
Alain Mazy <am@orthanc.team>
parents: 5640
diff changeset
2747 else if (missingTags.size() == 0)
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2748 {
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2749 expandFlags = static_cast<ExpandResourceFlags>(expandFlags & ~ExpandResourceFlags_IncludeMainDicomTags);
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2750 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2751
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2752 if (missingTags.size() == 0 && expandFlags == ExpandResourceFlags_None) // we have already retrieved anything we need
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2753 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2754 return true;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2755 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2756 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2757
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2758 if (expandFlags != ExpandResourceFlags_None &&
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2759 GetIndex().ExpandResource(resource, publicId, level, requestedTags,
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2760 static_cast<ExpandResourceFlags>(expandFlags | ExpandResourceFlags_IncludeMetadata))) // we always need the metadata to get the mainDicomTagsSignature
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2761 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2762 // check the main dicom tags list has not changed since the resource was stored
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2763 if (resource.mainDicomTagsSignature_ != DicomMap::GetMainDicomTagsSignature(resource.GetLevel()))
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2764 {
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2765 OrthancConfiguration::ReaderLock lock;
4944
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2766 if (lock.GetConfiguration().IsWarningEnabled(Warnings_002_InconsistentDicomTagsInDb))
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2767 {
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2768 LOG(WARNING) << "W002: " << Orthanc::GetResourceTypeText(resource.GetLevel(), false , false)
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2769 << " has been stored with another version of Main Dicom Tags list, you should POST to /"
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2770 << Orthanc::GetResourceTypeText(resource.GetLevel(), true, false)
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2771 << "/" << resource.GetPublicId()
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2772 << "/reconstruct to update the list of tags saved in DB. Some MainDicomTags might be missing from this answer.";
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2773 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2774 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2775
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2776 // possibly merge missing requested tags from dicom-as-json
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2777 if (allowStorageAccess &&
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2778 !resource.missingRequestedTags_.empty() &&
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2779 !DicomMap::HasOnlyComputedTags(resource.missingRequestedTags_))
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2780 {
4941
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2781 OrthancConfiguration::ReaderLock lock;
4944
f377d5643538 new Warnings configuration + InstanceAvailability tag
Alain Mazy <am@osimis.io>
parents: 4941
diff changeset
2782 if (lock.GetConfiguration().IsWarningEnabled(Warnings_001_TagsBeingReadFromStorage))
4941
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2783 {
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2784 std::set<DicomTag> missingTags;
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2785 Toolbox::AppendSets(missingTags, resource.missingRequestedTags_);
4981
d0c34145320c cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4978
diff changeset
2786 for (std::set<DicomTag>::const_iterator it = resource.missingRequestedTags_.begin(); it != resource.missingRequestedTags_.end(); ++it)
4941
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2787 {
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2788 if (DicomMap::IsComputedTag(*it))
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2789 {
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2790 missingTags.erase(*it);
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2791 }
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2792 }
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2793
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2794 std::string missings;
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2795 FromDcmtkBridge::FormatListOfTags(missings, missingTags);
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2796
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2797 LOG(WARNING) << "W001: Accessing Dicom tags from storage when accessing "
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2798 << Orthanc::GetResourceTypeText(resource.GetLevel(), false, false)
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2799 << " : " << missings;
4941
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2800 }
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2801
96a3e81eba90 performance warning
Alain Mazy <am@osimis.io>
parents: 4940
diff changeset
2802
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2803 std::string instanceId_ = instanceId;
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2804 DicomMap tagsFromJson;
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2805
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2806 if (dicomAsJson == NULL)
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2807 {
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2808 if (instanceId_.empty())
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2809 {
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2810 if (level == ResourceType_Instance)
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2811 {
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2812 instanceId_ = publicId;
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2813 }
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2814 else
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2815 {
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2816 std::list<std::string> instancesIds;
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2817 GetIndex().GetChildInstances(instancesIds, publicId);
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2818 if (instancesIds.size() < 1)
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2819 {
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2820 throw OrthancException(ErrorCode_InternalError, "ExpandResource: no instances found");
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2821 }
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2822 instanceId_ = instancesIds.front();
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2823 }
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2824 }
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2825
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2826 Json::Value tmpDicomAsJson;
5036
877bc3b96476 Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents: 4994
diff changeset
2827 ReadDicomAsJson(tmpDicomAsJson, instanceId_, resource.missingRequestedTags_ /* ignoreTagLength */); // read all tags from DICOM and avoid cropping requested tags
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
2828 tagsFromJson.FromDicomAsJson(tmpDicomAsJson, false /* append */, true /* parseSequences*/);
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2829 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2830 else
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2831 {
5044
6fed78e13233 Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents: 5043
diff changeset
2832 tagsFromJson.FromDicomAsJson(*dicomAsJson, false /* append */, true /* parseSequences*/);
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2833 }
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2834
5222
3a61fd50f804 starting refactoring ExpandedResource
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5221
diff changeset
2835 resource.GetMainDicomTags().Merge(tagsFromJson);
4937
3f9b9865c8cc include requested tags from storage if needed
Alain Mazy <am@osimis.io>
parents: 4936
diff changeset
2836 }
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2837
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2838 // compute the requested tags
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2839 ComputeTags(resource, *this, publicId, level, requestedTags);
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2840 }
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2841 else
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2842 {
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2843 return false;
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2844 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2845
4940
304514ce84ee tools/find + C-Find + list-resources now all using the same code (ExpandResource) to build 'computed tags'
Alain Mazy <am@osimis.io>
parents: 4939
diff changeset
2846 return true;
4935
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2847 }
acd3f72e2a21 split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
parents: 4921
diff changeset
2848
5111
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
2849 int64_t ServerContext::GetServerUpTime() const
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
2850 {
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
2851 boost::posix_time::ptime nowUtc = boost::posix_time::second_clock::universal_time();
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
2852 boost::posix_time::time_duration elapsed = nowUtc - serverStartTimeUtc_;
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
2853
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
2854 return elapsed.total_seconds();
7547c7dfd017 /tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents: 5060
diff changeset
2855 }
224
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2856 }