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annotate OrthancServer/DicomInstanceToStore.cpp @ 3844:c9c34bb50f0a

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 16 Apr 2020 17:27:18 +0200
parents be7df7fe3d80
children 281045a1e6db
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "DicomInstanceToStore.h"
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36
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37 #include "../Core/DicomParsing/FromDcmtkBridge.h"
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38 #include "../Core/DicomParsing/ParsedDicomFile.h"
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39 #include "../Core/Logging.h"
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40 #include "../Core/OrthancException.h"
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41
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42 #include <dcmtk/dcmdata/dcfilefo.h>
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43 #include <dcmtk/dcmdata/dcdeftag.h>
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44
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45
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46 namespace Orthanc
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47 {
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48 // Anonymous namespace to avoid clashes between compilation modules
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49 namespace
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50 {
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51 template <typename T>
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52 class SmartContainer
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53 {
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54 private:
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55 T* content_;
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56 bool toDelete_;
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57 bool isReadOnly_;
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58
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59 void Deallocate()
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60 {
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61 if (content_ && toDelete_)
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62 {
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63 delete content_;
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64 toDelete_ = false;
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65 content_ = NULL;
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66 }
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67 }
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68
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69 public:
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70 SmartContainer() : content_(NULL), toDelete_(false), isReadOnly_(true)
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71 {
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72 }
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73
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74 ~SmartContainer()
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75 {
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76 Deallocate();
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77 }
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78
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79 void Allocate()
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80 {
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81 Deallocate();
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82 content_ = new T;
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83 toDelete_ = true;
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84 isReadOnly_ = false;
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85 }
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86
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87 void TakeOwnership(T* content)
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88 {
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89 if (content == NULL)
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90 {
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91 throw OrthancException(ErrorCode_ParameterOutOfRange);
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92 }
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93
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94 Deallocate();
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95 content_ = content;
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96 toDelete_ = true;
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97 isReadOnly_ = false;
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98 }
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99
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100 void SetReference(T& content) // Read and write assign, without transfering ownership
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101 {
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102 Deallocate();
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103 content_ = &content;
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104 toDelete_ = false;
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105 isReadOnly_ = false;
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106 }
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107
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108 void SetConstReference(const T& content) // Read-only assign, without transfering ownership
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109 {
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110 Deallocate();
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111 content_ = &const_cast<T&>(content);
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112 toDelete_ = false;
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113 isReadOnly_ = true;
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114 }
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115
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116 bool HasContent() const
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117 {
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118 return content_ != NULL;
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119 }
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120
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121 T& GetContent()
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122 {
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123 if (content_ == NULL)
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124 {
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125 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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126 }
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127
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128 if (isReadOnly_)
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129 {
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130 throw OrthancException(ErrorCode_ReadOnly);
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131 }
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132
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133 return *content_;
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134 }
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135
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136 const T& GetConstContent() const
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137 {
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138 if (content_ == NULL)
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139 {
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140 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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141 }
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142
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143 return *content_;
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144 }
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145 };
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146 }
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147
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148
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149 class DicomInstanceToStore::PImpl
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150 {
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151 public:
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152 DicomInstanceOrigin origin_;
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153 bool hasBuffer_;
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154 std::unique_ptr<std::string> ownBuffer_;
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155 const void* bufferData_;
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156 size_t bufferSize_;
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157 SmartContainer<ParsedDicomFile> parsed_;
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158 SmartContainer<DicomMap> summary_;
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159 SmartContainer<Json::Value> json_;
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160 MetadataMap metadata_;
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161
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162 PImpl() :
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163 hasBuffer_(false),
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164 bufferData_(NULL),
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165 bufferSize_(0)
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166 {
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167 }
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168
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169 private:
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170 std::unique_ptr<DicomInstanceHasher> hasher_;
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171
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172 void ComputeMissingInformation()
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173 {
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174 if (hasBuffer_ &&
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175 summary_.HasContent() &&
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176 json_.HasContent())
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177 {
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178 // Fine, everything is available
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179 return;
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180 }
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181
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182 if (!hasBuffer_)
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183 {
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184 if (!parsed_.HasContent())
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185 {
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186 if (!summary_.HasContent())
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187 {
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188 throw OrthancException(ErrorCode_NotImplemented);
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189 }
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190 else
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191 {
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192 parsed_.TakeOwnership(new ParsedDicomFile(summary_.GetConstContent(),
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193 GetDefaultDicomEncoding(),
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194 false /* be strict */));
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195 }
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196 }
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197
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198 // Serialize the parsed DICOM file
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199 ownBuffer_.reset(new std::string);
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200 if (!FromDcmtkBridge::SaveToMemoryBuffer(*ownBuffer_,
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201 *parsed_.GetContent().GetDcmtkObject().getDataset()))
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202 {
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203 throw OrthancException(ErrorCode_InternalError,
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204 "Unable to serialize a DICOM file to a memory buffer");
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205 }
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206
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207 hasBuffer_ = true;
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208 }
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209
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210 if (summary_.HasContent() &&
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211 json_.HasContent())
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212 {
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213 return;
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214 }
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215
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216 // At this point, we know that the DICOM file is available as a
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217 // memory buffer, but that its summary or its JSON version is
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218 // missing
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219
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220 assert(hasBuffer_);
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221 if (!parsed_.HasContent())
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222 {
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223 if (ownBuffer_.get() != NULL)
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224 {
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225 parsed_.TakeOwnership(new ParsedDicomFile(*ownBuffer_));
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226 }
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227 else
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228 {
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229 parsed_.TakeOwnership(new ParsedDicomFile(bufferData_, bufferSize_));
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230 }
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231 }
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232
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233 // At this point, we have parsed the DICOM file
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234
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235 if (!summary_.HasContent())
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236 {
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237 summary_.Allocate();
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238 FromDcmtkBridge::ExtractDicomSummary(summary_.GetContent(),
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239 *parsed_.GetContent().GetDcmtkObject().getDataset());
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240 }
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241
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242 if (!json_.HasContent())
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243 {
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244 json_.Allocate();
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245
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246 std::set<DicomTag> ignoreTagLength;
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247 FromDcmtkBridge::ExtractDicomAsJson(json_.GetContent(),
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248 *parsed_.GetContent().GetDcmtkObject().getDataset(),
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249 ignoreTagLength);
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250 }
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251 }
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252
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253
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254 public:
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255 void SetBuffer(const void* data,
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256 size_t size)
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257 {
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diff changeset
258 ownBuffer_.reset(NULL);
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259 bufferData_ = data;
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260 bufferSize_ = size;
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261 hasBuffer_ = true;
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262 }
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263
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264 const void* GetBufferData()
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265 {
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266 ComputeMissingInformation();
3841
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267
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268 if (!hasBuffer_)
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269 {
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270 throw OrthancException(ErrorCode_InternalError);
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271 }
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272
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273 if (ownBuffer_.get() != NULL)
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274 {
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275 if (ownBuffer_->empty())
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276 {
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277 return NULL;
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278 }
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279 else
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280 {
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281 return ownBuffer_->c_str();
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282 }
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283 }
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284 else
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285 {
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286 return bufferData_;
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287 }
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288 }
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289
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290
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291 size_t GetBufferSize()
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292 {
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293 ComputeMissingInformation();
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294
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295 if (!hasBuffer_)
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296 {
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297 throw OrthancException(ErrorCode_InternalError);
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298 }
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299
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300 if (ownBuffer_.get() != NULL)
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301 {
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302 return ownBuffer_->size();
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303 }
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304 else
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305 {
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306 return bufferSize_;
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307 }
2894
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308 }
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309
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310
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311 const DicomMap& GetSummary()
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312 {
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313 ComputeMissingInformation();
a27b0e9a3fd9 refactoring DicomInstanceToStore
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314
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diff changeset
315 if (!summary_.HasContent())
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diff changeset
316 {
a27b0e9a3fd9 refactoring DicomInstanceToStore
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317 throw OrthancException(ErrorCode_InternalError);
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diff changeset
318 }
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diff changeset
319
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320 return summary_.GetConstContent();
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diff changeset
321 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
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diff changeset
322
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diff changeset
323
a27b0e9a3fd9 refactoring DicomInstanceToStore
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diff changeset
324 const Json::Value& GetJson()
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325 {
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326 ComputeMissingInformation();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
327
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
328 if (!json_.HasContent())
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
329 {
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diff changeset
330 throw OrthancException(ErrorCode_InternalError);
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diff changeset
331 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
332
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
333 return json_.GetConstContent();
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
334 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
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diff changeset
335
a27b0e9a3fd9 refactoring DicomInstanceToStore
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parents: 2640
diff changeset
336
2898
e5e3253a1164 DicomInstanceToStore::GetHasher()
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diff changeset
337 DicomInstanceHasher& GetHasher()
e5e3253a1164 DicomInstanceToStore::GetHasher()
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parents: 2894
diff changeset
338 {
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
339 if (hasher_.get() == NULL)
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
340 {
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
341 hasher_.reset(new DicomInstanceHasher(GetSummary()));
e5e3253a1164 DicomInstanceToStore::GetHasher()
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parents: 2894
diff changeset
342 }
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
343
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
344 if (hasher_.get() == NULL)
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
345 {
e5e3253a1164 DicomInstanceToStore::GetHasher()
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parents: 2894
diff changeset
346 throw OrthancException(ErrorCode_InternalError);
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
347 }
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
348
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
349 return *hasher_;
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
350 }
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
351
e5e3253a1164 DicomInstanceToStore::GetHasher()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2894
diff changeset
352
2894
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diff changeset
353 bool LookupTransferSyntax(std::string& result)
a27b0e9a3fd9 refactoring DicomInstanceToStore
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parents: 2640
diff changeset
354 {
a27b0e9a3fd9 refactoring DicomInstanceToStore
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diff changeset
355 ComputeMissingInformation();
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
356
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
357 DicomMap header;
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
358 if (DicomMap::ParseDicomMetaInformation(header, GetBufferData(), GetBufferSize()))
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
359 {
a27b0e9a3fd9 refactoring DicomInstanceToStore
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parents: 2640
diff changeset
360 const DicomValue* value = header.TestAndGetValue(DICOM_TAG_TRANSFER_SYNTAX_UID);
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
361 if (value != NULL &&
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
362 !value->IsBinary() &&
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
363 !value->IsNull())
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
364 {
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
365 result = Toolbox::StripSpaces(value->GetContent());
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
366 return true;
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
367 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
368 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
369
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
370 return false;
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
371 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
372 };
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
373
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
374
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
375 DicomInstanceToStore::DicomInstanceToStore() :
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
376 pimpl_(new PImpl)
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
377 {
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
378 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
379
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
380
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
381 void DicomInstanceToStore::SetOrigin(const DicomInstanceOrigin& origin)
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
382 {
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
383 pimpl_->origin_ = origin;
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
384 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
385
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
386
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
387 const DicomInstanceOrigin& DicomInstanceToStore::GetOrigin() const
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
388 {
a27b0e9a3fd9 refactoring DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
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389 return pimpl_->origin_;
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390 }
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391
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392
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393 void DicomInstanceToStore::SetBuffer(const void* dicom,
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394 size_t size)
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395 {
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396 pimpl_->SetBuffer(dicom, size);
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397 }
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398
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399
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400 void DicomInstanceToStore::SetParsedDicomFile(ParsedDicomFile& parsed)
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401 {
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402 pimpl_->parsed_.SetReference(parsed);
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403 }
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404
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405
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406 void DicomInstanceToStore::SetSummary(const DicomMap& summary)
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407 {
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408 pimpl_->summary_.SetConstReference(summary);
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409 }
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410
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411
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412 void DicomInstanceToStore::SetJson(const Json::Value& json)
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413 {
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414 pimpl_->json_.SetConstReference(json);
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415 }
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416
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417
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418 const DicomInstanceToStore::MetadataMap& DicomInstanceToStore::GetMetadata() const
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419 {
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420 return pimpl_->metadata_;
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421 }
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422
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423
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424 DicomInstanceToStore::MetadataMap& DicomInstanceToStore::GetMetadata()
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425 {
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426 return pimpl_->metadata_;
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427 }
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428
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429
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430 void DicomInstanceToStore::AddMetadata(ResourceType level,
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431 MetadataType metadata,
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432 const std::string& value)
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433 {
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434 pimpl_->metadata_[std::make_pair(level, metadata)] = value;
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435 }
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436
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437
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438 const void* DicomInstanceToStore::GetBufferData()
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439 {
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440 return pimpl_->GetBufferData();
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441 }
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442
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443
1d35281d967c DicomInstanceToStore
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444 size_t DicomInstanceToStore::GetBufferSize()
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445 {
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446 return pimpl_->GetBufferSize();
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447 }
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448
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449
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450 const DicomMap& DicomInstanceToStore::GetSummary()
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451 {
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452 return pimpl_->GetSummary();
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453 }
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diff changeset
454
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diff changeset
455
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456 const Json::Value& DicomInstanceToStore::GetJson()
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457 {
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458 return pimpl_->GetJson();
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459 }
1572
904096e7367e More information about the origin request in OnStoredInstance() callbacks
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parents: 1486
diff changeset
460
904096e7367e More information about the origin request in OnStoredInstance() callbacks
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461
2189
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462 bool DicomInstanceToStore::LookupTransferSyntax(std::string& result)
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parents: 2131
diff changeset
463 {
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464 return pimpl_->LookupTransferSyntax(result);
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465 }
2898
e5e3253a1164 DicomInstanceToStore::GetHasher()
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466
e5e3253a1164 DicomInstanceToStore::GetHasher()
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diff changeset
467
e5e3253a1164 DicomInstanceToStore::GetHasher()
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diff changeset
468 DicomInstanceHasher& DicomInstanceToStore::GetHasher()
e5e3253a1164 DicomInstanceToStore::GetHasher()
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parents: 2894
diff changeset
469 {
e5e3253a1164 DicomInstanceToStore::GetHasher()
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diff changeset
470 return pimpl_->GetHasher();
e5e3253a1164 DicomInstanceToStore::GetHasher()
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diff changeset
471 }
1003
1d35281d967c DicomInstanceToStore
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472 }