Mercurial > hg > orthanc
annotate OrthancServer/ParsedDicomFile.cpp @ 2314:c54c9523adf8 issue-46-anonymization
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 12 Jul 2017 22:09:27 +0200 |
parents | b7fba68747f6 |
children | 96b3ec054b69 |
rev | line source |
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790 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017 Osimis, Belgium |
790 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
34 | |
35 /*========================================================================= | |
36 | |
37 This file is based on portions of the following project: | |
38 | |
39 Program: GDCM (Grassroots DICOM). A DICOM library | |
40 Module: http://gdcm.sourceforge.net/Copyright.html | |
41 | |
42 Copyright (c) 2006-2011 Mathieu Malaterre | |
43 Copyright (c) 1993-2005 CREATIS | |
44 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image) | |
45 All rights reserved. | |
46 | |
47 Redistribution and use in source and binary forms, with or without | |
48 modification, are permitted provided that the following conditions are met: | |
49 | |
50 * Redistributions of source code must retain the above copyright notice, | |
51 this list of conditions and the following disclaimer. | |
52 | |
53 * Redistributions in binary form must reproduce the above copyright notice, | |
54 this list of conditions and the following disclaimer in the documentation | |
55 and/or other materials provided with the distribution. | |
56 | |
57 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any | |
58 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to | |
59 endorse or promote products derived from this software without specific | |
60 prior written permission. | |
61 | |
62 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' | |
63 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE | |
64 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE | |
65 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR | |
66 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL | |
67 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR | |
68 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER | |
69 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, | |
70 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE | |
71 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | |
72 | |
73 =========================================================================*/ | |
74 | |
75 | |
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76 #include "PrecompiledHeadersServer.h" |
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77 |
790 | 78 #ifndef NOMINMAX |
79 #define NOMINMAX | |
80 #endif | |
81 | |
82 #include "ParsedDicomFile.h" | |
83 | |
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84 #include "OrthancInitialization.h" |
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85 #include "ServerToolbox.h" |
790 | 86 #include "FromDcmtkBridge.h" |
87 #include "ToDcmtkBridge.h" | |
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88 #include "Internals/DicomFrameIndex.h" |
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89 #include "../Core/Images/JpegReader.h" |
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90 #include "../Core/Images/PngReader.h" |
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91 #include "../Core/Logging.h" |
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92 #include "../Core/OrthancException.h" |
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93 #include "../Core/Toolbox.h" |
790 | 94 |
95 #include <list> | |
96 #include <limits> | |
97 | |
98 #include <boost/lexical_cast.hpp> | |
99 | |
100 #include <dcmtk/dcmdata/dcchrstr.h> | |
101 #include <dcmtk/dcmdata/dcdicent.h> | |
102 #include <dcmtk/dcmdata/dcdict.h> | |
103 #include <dcmtk/dcmdata/dcfilefo.h> | |
104 #include <dcmtk/dcmdata/dcuid.h> | |
105 #include <dcmtk/dcmdata/dcmetinf.h> | |
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106 #include <dcmtk/dcmdata/dcdeftag.h> |
790 | 107 |
108 #include <dcmtk/dcmdata/dcvrae.h> | |
109 #include <dcmtk/dcmdata/dcvras.h> | |
110 #include <dcmtk/dcmdata/dcvrcs.h> | |
111 #include <dcmtk/dcmdata/dcvrda.h> | |
112 #include <dcmtk/dcmdata/dcvrds.h> | |
113 #include <dcmtk/dcmdata/dcvrdt.h> | |
114 #include <dcmtk/dcmdata/dcvrfd.h> | |
115 #include <dcmtk/dcmdata/dcvrfl.h> | |
116 #include <dcmtk/dcmdata/dcvris.h> | |
117 #include <dcmtk/dcmdata/dcvrlo.h> | |
118 #include <dcmtk/dcmdata/dcvrlt.h> | |
119 #include <dcmtk/dcmdata/dcvrpn.h> | |
120 #include <dcmtk/dcmdata/dcvrsh.h> | |
121 #include <dcmtk/dcmdata/dcvrsl.h> | |
122 #include <dcmtk/dcmdata/dcvrss.h> | |
123 #include <dcmtk/dcmdata/dcvrst.h> | |
124 #include <dcmtk/dcmdata/dcvrtm.h> | |
125 #include <dcmtk/dcmdata/dcvrui.h> | |
126 #include <dcmtk/dcmdata/dcvrul.h> | |
127 #include <dcmtk/dcmdata/dcvrus.h> | |
128 #include <dcmtk/dcmdata/dcvrut.h> | |
129 #include <dcmtk/dcmdata/dcpixel.h> | |
130 #include <dcmtk/dcmdata/dcpixseq.h> | |
131 #include <dcmtk/dcmdata/dcpxitem.h> | |
132 | |
133 | |
134 #include <boost/math/special_functions/round.hpp> | |
135 #include <dcmtk/dcmdata/dcostrmb.h> | |
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136 #include <boost/algorithm/string/predicate.hpp> |
790 | 137 |
138 | |
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139 #if DCMTK_VERSION_NUMBER <= 360 |
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140 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax |
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141 #endif |
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142 |
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143 |
790 | 144 static const char* CONTENT_TYPE_OCTET_STREAM = "application/octet-stream"; |
145 | |
146 | |
147 | |
148 namespace Orthanc | |
149 { | |
794 | 150 struct ParsedDicomFile::PImpl |
151 { | |
152 std::auto_ptr<DcmFileFormat> file_; | |
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153 std::auto_ptr<DicomFrameIndex> frameIndex_; |
794 | 154 }; |
155 | |
156 | |
790 | 157 static void SendPathValueForDictionary(RestApiOutput& output, |
158 DcmItem& dicom) | |
159 { | |
160 Json::Value v = Json::arrayValue; | |
161 | |
162 for (unsigned long i = 0; i < dicom.card(); i++) | |
163 { | |
164 DcmElement* element = dicom.getElement(i); | |
165 if (element) | |
166 { | |
167 char buf[16]; | |
168 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag()); | |
169 v.append(buf); | |
170 } | |
171 } | |
172 | |
173 output.AnswerJson(v); | |
174 } | |
175 | |
176 static inline uint16_t GetCharValue(char c) | |
177 { | |
178 if (c >= '0' && c <= '9') | |
179 return c - '0'; | |
180 else if (c >= 'a' && c <= 'f') | |
181 return c - 'a' + 10; | |
182 else if (c >= 'A' && c <= 'F') | |
183 return c - 'A' + 10; | |
184 else | |
185 return 0; | |
186 } | |
187 | |
188 static inline uint16_t GetTagValue(const char* c) | |
189 { | |
190 return ((GetCharValue(c[0]) << 12) + | |
191 (GetCharValue(c[1]) << 8) + | |
192 (GetCharValue(c[2]) << 4) + | |
193 GetCharValue(c[3])); | |
194 } | |
195 | |
196 static void ParseTagAndGroup(DcmTagKey& key, | |
197 const std::string& tag) | |
198 { | |
199 DicomTag t = FromDcmtkBridge::ParseTag(tag); | |
200 key = DcmTagKey(t.GetGroup(), t.GetElement()); | |
201 } | |
202 | |
203 | |
204 static void SendSequence(RestApiOutput& output, | |
205 DcmSequenceOfItems& sequence) | |
206 { | |
207 // This element is a sequence | |
208 Json::Value v = Json::arrayValue; | |
209 | |
210 for (unsigned long i = 0; i < sequence.card(); i++) | |
211 { | |
212 v.append(boost::lexical_cast<std::string>(i)); | |
213 } | |
214 | |
215 output.AnswerJson(v); | |
216 } | |
217 | |
218 | |
219 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData, | |
220 E_TransferSyntax transferSyntax) | |
221 { | |
222 DcmPixelSequence* pixelSequence = NULL; | |
223 if (pixelData.getEncapsulatedRepresentation | |
224 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
225 { | |
226 return pixelSequence->card(); | |
227 } | |
228 else | |
229 { | |
230 return 1; | |
231 } | |
232 } | |
233 | |
234 | |
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235 namespace |
790 | 236 { |
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237 class DicomFieldStream : public IHttpStreamAnswer |
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238 { |
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239 private: |
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240 DcmElement& element_; |
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241 uint32_t length_; |
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242 uint32_t offset_; |
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243 std::string chunk_; |
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244 size_t chunkSize_; |
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245 |
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246 public: |
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247 DicomFieldStream(DcmElement& element, |
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248 E_TransferSyntax transferSyntax) : |
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249 element_(element), |
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250 length_(element.getLength(transferSyntax)), |
1616 | 251 offset_(0), |
252 chunkSize_(0) | |
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253 { |
1521 | 254 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB |
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255 chunk_.resize(CHUNK_SIZE); |
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256 } |
790 | 257 |
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258 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/, |
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259 bool /*deflateAllowed*/) |
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260 { |
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261 // No support for compression |
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262 return HttpCompression_None; |
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263 } |
790 | 264 |
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265 virtual bool HasContentFilename(std::string& filename) |
790 | 266 { |
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267 return false; |
790 | 268 } |
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269 |
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270 virtual std::string GetContentType() |
790 | 271 { |
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272 return ""; |
790 | 273 } |
274 | |
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275 virtual uint64_t GetContentLength() |
790 | 276 { |
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277 return length_; |
790 | 278 } |
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279 |
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280 virtual bool ReadNextChunk() |
790 | 281 { |
1520 | 282 assert(offset_ <= length_); |
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283 |
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284 if (offset_ == length_) |
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285 { |
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286 return false; |
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287 } |
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288 else |
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289 { |
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290 if (length_ - offset_ < chunk_.size()) |
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291 { |
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292 chunkSize_ = length_ - offset_; |
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293 } |
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294 else |
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295 { |
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296 chunkSize_ = chunk_.size(); |
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297 } |
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298 |
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299 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_); |
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300 |
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301 offset_ += chunkSize_; |
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302 |
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303 if (!cond.good()) |
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304 { |
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305 LOG(ERROR) << "Error while sending a DICOM field: " << cond.text(); |
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306 throw OrthancException(ErrorCode_InternalError); |
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307 } |
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308 |
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309 return true; |
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310 } |
790 | 311 } |
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312 |
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313 virtual const char *GetChunkContent() |
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314 { |
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315 return chunk_.c_str(); |
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316 } |
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317 |
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318 virtual size_t GetChunkSize() |
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319 { |
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320 return chunkSize_; |
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321 } |
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322 }; |
790 | 323 } |
324 | |
325 | |
326 static bool AnswerPixelData(RestApiOutput& output, | |
327 DcmItem& dicom, | |
328 E_TransferSyntax transferSyntax, | |
329 const std::string* blockUri) | |
330 { | |
331 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(), | |
332 DICOM_TAG_PIXEL_DATA.GetElement()); | |
333 | |
334 DcmElement *element = NULL; | |
335 if (!dicom.findAndGetElement(k, element).good() || | |
336 element == NULL) | |
337 { | |
338 return false; | |
339 } | |
340 | |
341 try | |
342 { | |
343 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); | |
344 if (blockUri == NULL) | |
345 { | |
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346 // The user asks how many blocks are present in this pixel data |
790 | 347 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax); |
348 | |
349 Json::Value result(Json::arrayValue); | |
350 for (unsigned int i = 0; i < blocks; i++) | |
351 { | |
352 result.append(boost::lexical_cast<std::string>(i)); | |
353 } | |
354 | |
355 output.AnswerJson(result); | |
356 return true; | |
357 } | |
358 | |
359 | |
360 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri); | |
361 | |
362 if (block < GetPixelDataBlockCount(pixelData, transferSyntax)) | |
363 { | |
364 DcmPixelSequence* pixelSequence = NULL; | |
365 if (pixelData.getEncapsulatedRepresentation | |
366 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
367 { | |
368 // This is the case for JPEG transfer syntaxes | |
369 if (block < pixelSequence->card()) | |
370 { | |
371 DcmPixelItem* pixelItem = NULL; | |
372 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem) | |
373 { | |
374 if (pixelItem->getLength() == 0) | |
375 { | |
376 output.AnswerBuffer(NULL, 0, CONTENT_TYPE_OCTET_STREAM); | |
377 return true; | |
378 } | |
379 | |
380 Uint8* buffer = NULL; | |
381 if (pixelItem->getUint8Array(buffer).good() && buffer) | |
382 { | |
383 output.AnswerBuffer(buffer, pixelItem->getLength(), CONTENT_TYPE_OCTET_STREAM); | |
384 return true; | |
385 } | |
386 } | |
387 } | |
388 } | |
389 else | |
390 { | |
391 // This is the case for raw, uncompressed image buffers | |
392 assert(*blockUri == "0"); | |
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393 DicomFieldStream stream(*element, transferSyntax); |
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394 output.AnswerStream(stream); |
790 | 395 } |
396 } | |
397 } | |
398 catch (boost::bad_lexical_cast&) | |
399 { | |
400 // The URI entered by the user is not a number | |
401 } | |
402 catch (std::bad_cast&) | |
403 { | |
404 // This should never happen | |
405 } | |
406 | |
407 return false; | |
408 } | |
409 | |
410 | |
411 | |
412 static void SendPathValueForLeaf(RestApiOutput& output, | |
413 const std::string& tag, | |
414 DcmItem& dicom, | |
415 E_TransferSyntax transferSyntax) | |
416 { | |
417 DcmTagKey k; | |
418 ParseTagAndGroup(k, tag); | |
419 | |
420 DcmSequenceOfItems* sequence = NULL; | |
421 if (dicom.findAndGetSequence(k, sequence).good() && | |
422 sequence != NULL && | |
423 sequence->getVR() == EVR_SQ) | |
424 { | |
425 SendSequence(output, *sequence); | |
426 return; | |
427 } | |
428 | |
429 DcmElement* element = NULL; | |
430 if (dicom.findAndGetElement(k, element).good() && | |
431 element != NULL && | |
432 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags | |
433 element->getVR() != EVR_SQ) | |
434 { | |
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435 DicomFieldStream stream(*element, transferSyntax); |
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436 output.AnswerStream(stream); |
790 | 437 } |
438 } | |
439 | |
440 void ParsedDicomFile::SendPathValue(RestApiOutput& output, | |
441 const UriComponents& uri) | |
442 { | |
794 | 443 DcmItem* dicom = pimpl_->file_->getDataset(); |
444 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer(); | |
790 | 445 |
446 // Special case: Accessing the pixel data | |
447 if (uri.size() == 1 || | |
448 uri.size() == 2) | |
449 { | |
450 DcmTagKey tag; | |
451 ParseTagAndGroup(tag, uri[0]); | |
452 | |
453 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() && | |
454 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement()) | |
455 { | |
456 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]); | |
457 return; | |
458 } | |
459 } | |
460 | |
461 // Go down in the tag hierarchy according to the URI | |
462 for (size_t pos = 0; pos < uri.size() / 2; pos++) | |
463 { | |
464 size_t index; | |
465 try | |
466 { | |
467 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]); | |
468 } | |
469 catch (boost::bad_lexical_cast&) | |
470 { | |
471 return; | |
472 } | |
473 | |
474 DcmTagKey k; | |
475 DcmItem *child = NULL; | |
476 ParseTagAndGroup(k, uri[2 * pos]); | |
477 if (!dicom->findAndGetSequenceItem(k, child, index).good() || | |
478 child == NULL) | |
479 { | |
480 return; | |
481 } | |
482 | |
483 dicom = child; | |
484 } | |
485 | |
486 // We have reached the end of the URI | |
487 if (uri.size() % 2 == 0) | |
488 { | |
489 SendPathValueForDictionary(output, *dicom); | |
490 } | |
491 else | |
492 { | |
493 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax); | |
494 } | |
495 } | |
496 | |
497 | |
498 void ParsedDicomFile::Remove(const DicomTag& tag) | |
499 { | |
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500 InvalidateCache(); |
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501 |
790 | 502 DcmTagKey key(tag.GetGroup(), tag.GetElement()); |
794 | 503 DcmElement* element = pimpl_->file_->getDataset()->remove(key); |
790 | 504 if (element != NULL) |
505 { | |
506 delete element; | |
507 } | |
508 } | |
509 | |
510 | |
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511 void ParsedDicomFile::Clear(const DicomTag& tag, |
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512 bool onlyIfExists) |
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513 { |
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514 InvalidateCache(); |
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515 |
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516 DcmItem* dicom = pimpl_->file_->getDataset(); |
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517 DcmTagKey key(tag.GetGroup(), tag.GetElement()); |
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518 |
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519 if (onlyIfExists && |
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520 !dicom->tagExists(key)) |
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521 { |
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522 // The tag is non-existing, do not clear it |
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523 } |
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524 else |
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525 { |
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526 if (!dicom->insertEmptyElement(key, OFTrue /* replace old value */).good()) |
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527 { |
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528 throw OrthancException(ErrorCode_InternalError); |
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529 } |
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530 } |
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531 } |
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532 |
790 | 533 |
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534 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep) |
790 | 535 { |
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536 InvalidateCache(); |
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537 |
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538 DcmDataset& dataset = *pimpl_->file_->getDataset(); |
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539 |
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540 // Loop over the dataset to detect its private tags |
790 | 541 typedef std::list<DcmElement*> Tags; |
542 Tags privateTags; | |
543 | |
544 for (unsigned long i = 0; i < dataset.card(); i++) | |
545 { | |
546 DcmElement* element = dataset.getElement(i); | |
547 DcmTag tag(element->getTag()); | |
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548 |
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549 // Is this a private tag? |
1694 | 550 if (tag.isPrivate()) |
790 | 551 { |
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552 bool remove = true; |
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553 |
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554 // Check whether this private tag is to be kept |
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555 if (toKeep != NULL) |
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556 { |
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557 DicomTag tmp = FromDcmtkBridge::Convert(tag); |
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558 if (toKeep->find(tmp) != toKeep->end()) |
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559 { |
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560 remove = false; // Keep it |
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561 } |
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562 } |
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563 |
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564 if (remove) |
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565 { |
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566 privateTags.push_back(element); |
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567 } |
790 | 568 } |
569 } | |
570 | |
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571 // Loop over the detected private tags to remove them |
790 | 572 for (Tags::iterator it = privateTags.begin(); |
573 it != privateTags.end(); ++it) | |
574 { | |
575 DcmElement* tmp = dataset.remove(*it); | |
576 if (tmp != NULL) | |
577 { | |
578 delete tmp; | |
579 } | |
580 } | |
581 } | |
582 | |
583 | |
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584 static void InsertInternal(DcmDataset& dicom, |
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585 DcmElement* element) |
790 | 586 { |
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587 OFCondition cond = dicom.insert(element, false, false); |
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588 if (!cond.good()) |
790 | 589 { |
590 // This field already exists | |
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591 delete element; |
790 | 592 throw OrthancException(ErrorCode_InternalError); |
593 } | |
594 } | |
595 | |
596 | |
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597 void ParsedDicomFile::Insert(const DicomTag& tag, |
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598 const Json::Value& value, |
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599 bool decodeDataUriScheme) |
790 | 600 { |
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601 if (pimpl_->file_->getDataset()->tagExists(ToDcmtkBridge::Convert(tag))) |
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602 { |
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603 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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604 } |
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605 |
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606 if (decodeDataUriScheme && |
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607 value.type() == Json::stringValue && |
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608 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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609 tag == DICOM_TAG_PIXEL_DATA)) |
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610 { |
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611 if (EmbedContentInternal(value.asString())) |
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612 { |
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613 return; |
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614 } |
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615 } |
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616 |
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617 InvalidateCache(); |
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618 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding())); |
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619 InsertInternal(*pimpl_->file_->getDataset(), element.release()); |
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620 } |
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621 |
790 | 622 |
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623 static bool CanReplaceProceed(DcmDataset& dicom, |
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624 const DcmTagKey& tag, |
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625 DicomReplaceMode mode) |
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626 { |
1979 | 627 if (dicom.findAndDeleteElement(tag).good()) |
790 | 628 { |
1979 | 629 // This tag was existing, it has been deleted |
630 return true; | |
631 } | |
632 else | |
633 { | |
634 // This tag was absent, act wrt. the specified "mode" | |
790 | 635 switch (mode) |
636 { | |
637 case DicomReplaceMode_InsertIfAbsent: | |
1979 | 638 return true; |
790 | 639 |
640 case DicomReplaceMode_ThrowIfAbsent: | |
641 throw OrthancException(ErrorCode_InexistentItem); | |
642 | |
643 case DicomReplaceMode_IgnoreIfAbsent: | |
1979 | 644 return false; |
645 | |
646 default: | |
647 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
790 | 648 } |
649 } | |
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650 } |
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651 |
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652 |
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653 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag, |
1695 | 654 const std::string& utf8Value, |
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655 bool decodeDataUriScheme) |
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656 { |
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657 if (tag != DICOM_TAG_SOP_CLASS_UID && |
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658 tag != DICOM_TAG_SOP_INSTANCE_UID) |
790 | 659 { |
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660 return; |
790 | 661 } |
662 | |
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663 std::string binary; |
1695 | 664 const std::string* decoded = &utf8Value; |
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665 |
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666 if (decodeDataUriScheme && |
1695 | 667 boost::starts_with(utf8Value, "data:application/octet-stream;base64,")) |
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668 { |
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669 std::string mime; |
1981
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return code in Toolbox::DecodeDataUriScheme
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670 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
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return code in Toolbox::DecodeDataUriScheme
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671 { |
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return code in Toolbox::DecodeDataUriScheme
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672 throw OrthancException(ErrorCode_BadFileFormat); |
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673 } |
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|
674 |
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675 decoded = &binary; |
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676 } |
1695 | 677 else |
678 { | |
679 Encoding encoding = GetEncoding(); | |
680 if (GetEncoding() != Encoding_Utf8) | |
681 { | |
682 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding); | |
683 decoded = &binary; | |
684 } | |
685 } | |
790 | 686 |
687 /** | |
688 * dcmodify will automatically correct 'Media Storage SOP Class | |
689 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if | |
690 * you make changes to the related tags in the dataset ('SOP Class | |
691 * UID' and 'SOP Instance UID') via insert or modify mode | |
692 * options. You can disable this behaviour by using the -nmu | |
693 * option. | |
694 **/ | |
695 | |
696 if (tag == DICOM_TAG_SOP_CLASS_UID) | |
697 { | |
1982
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698 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded); |
790 | 699 } |
700 | |
701 if (tag == DICOM_TAG_SOP_INSTANCE_UID) | |
702 { | |
1982
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Modification of instances can now replace PixelData
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1981
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|
703 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded); |
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|
704 } |
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|
705 } |
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|
706 |
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|
707 |
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|
708 void ParsedDicomFile::Replace(const DicomTag& tag, |
1695 | 709 const std::string& utf8Value, |
1982
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1981
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|
710 bool decodeDataUriScheme, |
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|
711 DicomReplaceMode mode) |
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|
712 { |
1924
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
713 InvalidateCache(); |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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|
714 |
1982
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Modification of instances can now replace PixelData
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parents:
1981
diff
changeset
|
715 DcmDataset& dicom = *pimpl_->file_->getDataset(); |
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Modification of instances can now replace PixelData
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1981
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|
716 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
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1981
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717 { |
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changeset
|
718 // Either the tag was previously existing (and now removed), or |
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Modification of instances can now replace PixelData
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1981
diff
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|
719 // the replace mode was set to "InsertIfAbsent" |
1979 | 720 |
1982
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Modification of instances can now replace PixelData
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|
721 if (decodeDataUriScheme && |
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722 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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723 tag == DICOM_TAG_PIXEL_DATA)) |
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724 { |
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725 if (EmbedContentInternal(utf8Value)) |
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|
726 { |
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|
727 return; |
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|
728 } |
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Modification of instances can now replace PixelData
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|
729 } |
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Modification of instances can now replace PixelData
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1981
diff
changeset
|
730 |
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Modification of instances can now replace PixelData
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changeset
|
731 std::auto_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag)); |
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|
732 FromDcmtkBridge::FillElementWithString(*element, tag, utf8Value, decodeDataUriScheme, GetEncoding()); |
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733 |
1979 | 734 InsertInternal(dicom, element.release()); |
735 UpdateStorageUid(tag, utf8Value, false); | |
736 } | |
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|
737 } |
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738 |
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|
739 |
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740 void ParsedDicomFile::Replace(const DicomTag& tag, |
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741 const Json::Value& value, |
1818
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742 bool decodeDataUriScheme, |
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|
743 DicomReplaceMode mode) |
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|
744 { |
1924
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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|
745 InvalidateCache(); |
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|
746 |
1982
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Modification of instances can now replace PixelData
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1981
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747 DcmDataset& dicom = *pimpl_->file_->getDataset(); |
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Modification of instances can now replace PixelData
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748 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
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Modification of instances can now replace PixelData
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749 { |
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|
750 // Either the tag was previously existing (and now removed), or |
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Modification of instances can now replace PixelData
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|
751 // the replace mode was set to "InsertIfAbsent" |
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752 |
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Modification of instances can now replace PixelData
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|
753 if (decodeDataUriScheme && |
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Modification of instances can now replace PixelData
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754 value.type() == Json::stringValue && |
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|
755 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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Modification of instances can now replace PixelData
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1981
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|
756 tag == DICOM_TAG_PIXEL_DATA)) |
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Modification of instances can now replace PixelData
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diff
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757 { |
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Modification of instances can now replace PixelData
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changeset
|
758 if (EmbedContentInternal(value.asString())) |
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|
759 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
760 return; |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
761 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
762 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
763 |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
764 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding())); |
1979 | 765 |
766 if (tag == DICOM_TAG_SOP_CLASS_UID || | |
767 tag == DICOM_TAG_SOP_INSTANCE_UID) | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
768 { |
1979 | 769 if (value.type() != Json::stringValue) |
770 { | |
771 throw OrthancException(ErrorCode_BadParameterType); | |
772 } | |
773 | |
774 UpdateStorageUid(tag, value.asString(), decodeDataUriScheme); | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
775 } |
790 | 776 } |
777 } | |
778 | |
779 | |
780 void ParsedDicomFile::Answer(RestApiOutput& output) | |
781 { | |
782 std::string serialized; | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
783 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *pimpl_->file_->getDataset())) |
790 | 784 { |
785 output.AnswerBuffer(serialized, CONTENT_TYPE_OCTET_STREAM); | |
786 } | |
787 } | |
788 | |
789 | |
790 | |
791 bool ParsedDicomFile::GetTagValue(std::string& value, | |
792 const DicomTag& tag) | |
793 { | |
794 DcmTagKey k(tag.GetGroup(), tag.GetElement()); | |
794 | 795 DcmDataset& dataset = *pimpl_->file_->getDataset(); |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
796 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
797 if (tag.IsPrivate() || |
1655
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1641
diff
changeset
|
798 FromDcmtkBridge::IsUnknownTag(tag) || |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
799 tag == DICOM_TAG_PIXEL_DATA || |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
800 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
790 | 801 { |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
802 const Uint8* data = NULL; // This is freed in the destructor of the dataset |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
803 long unsigned int count = 0; |
790 | 804 |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
805 if (dataset.findAndGetUint8Array(k, data, &count).good()) |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
806 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
807 if (count > 0) |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
808 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
809 assert(data != NULL); |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
810 value.assign(reinterpret_cast<const char*>(data), count); |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
811 } |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
812 else |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
813 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
814 value.clear(); |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
815 } |
790 | 816 |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
817 return true; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
818 } |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
819 else |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
820 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
821 return false; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
822 } |
790 | 823 } |
824 else | |
825 { | |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
826 DcmElement* element = NULL; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
827 if (!dataset.findAndGetElement(k, element).good() || |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
828 element == NULL) |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
829 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
830 return false; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
831 } |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
832 |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
833 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
1929
cda5b0ab4ce5
ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1928
diff
changeset
|
834 (*element, DicomToJsonFlags_Default, |
cda5b0ab4ce5
ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1928
diff
changeset
|
835 ORTHANC_MAXIMUM_TAG_LENGTH, GetEncoding())); |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
836 |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
837 if (v.get() == NULL || |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
838 v->IsNull()) |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
839 { |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
840 value = ""; |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
841 } |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
842 else |
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
843 { |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
844 // TODO v->IsBinary() |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
845 value = v->GetContent(); |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
846 } |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
847 |
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
848 return true; |
790 | 849 } |
850 } | |
851 | |
852 | |
853 DicomInstanceHasher ParsedDicomFile::GetHasher() | |
854 { | |
855 std::string patientId, studyUid, seriesUid, instanceUid; | |
856 | |
857 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID) || | |
858 !GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) || | |
859 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) || | |
860 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID)) | |
861 { | |
862 throw OrthancException(ErrorCode_BadFileFormat); | |
863 } | |
864 | |
865 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid); | |
866 } | |
867 | |
868 | |
869 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer) | |
870 { | |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
871 FromDcmtkBridge::SaveToMemoryBuffer(buffer, *pimpl_->file_->getDataset()); |
790 | 872 } |
873 | |
874 | |
875 void ParsedDicomFile::SaveToFile(const std::string& path) | |
876 { | |
877 // TODO Avoid using a temporary memory buffer, write directly on disk | |
878 std::string content; | |
879 SaveToMemoryBuffer(content); | |
2140 | 880 SystemToolbox::WriteFile(content, path); |
790 | 881 } |
882 | |
883 | |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
884 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl) |
790 | 885 { |
794 | 886 pimpl_->file_.reset(new DcmFileFormat); |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
887 |
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
888 if (createIdentifiers) |
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
889 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
890 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient)); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
891 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study)); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
892 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series)); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
893 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
894 } |
790 | 895 } |
896 | |
791 | 897 |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
898 void ParsedDicomFile::CreateFromDicomMap(const DicomMap& source, |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
899 Encoding defaultEncoding) |
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
900 { |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
901 pimpl_->file_.reset(new DcmFileFormat); |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
902 |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
903 const DicomValue* tmp = source.TestAndGetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
904 if (tmp != NULL) |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
905 { |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
906 Encoding encoding; |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
907 if (tmp->IsNull() || |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
908 tmp->IsBinary() || |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
909 !GetDicomEncoding(encoding, tmp->GetContent().c_str())) |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
910 { |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
911 throw OrthancException(ErrorCode_ParameterOutOfRange); |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
912 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
913 else |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
914 { |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
915 SetEncoding(encoding); |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
916 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
917 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
918 else |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
919 { |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
920 SetEncoding(defaultEncoding); |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
921 } |
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
922 |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
923 for (DicomMap::Map::const_iterator |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
924 it = source.map_.begin(); it != source.map_.end(); ++it) |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
925 { |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
926 if (it->first != DICOM_TAG_SPECIFIC_CHARACTER_SET && |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
927 !it->second->IsNull()) |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
928 { |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
929 ReplacePlainString(it->first, it->second->GetContent()); |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
930 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
931 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
932 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
933 |
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
934 |
2202
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
935 ParsedDicomFile::ParsedDicomFile(const DicomMap& map, |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
936 Encoding defaultEncoding) : |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
937 pimpl_(new PImpl) |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
938 { |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
939 CreateFromDicomMap(map, defaultEncoding); |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
940 } |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
941 |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
942 |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
943 ParsedDicomFile::ParsedDicomFile(const DicomMap& map) : |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
944 pimpl_(new PImpl) |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
945 { |
9b373b7d6713
Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2142
diff
changeset
|
946 CreateFromDicomMap(map, Configuration::GetDefaultEncoding()); |
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
947 } |
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
948 |
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
949 |
1800
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
950 ParsedDicomFile::ParsedDicomFile(const void* content, |
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
951 size_t size) : pimpl_(new PImpl) |
791 | 952 { |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
953 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size)); |
791 | 954 } |
955 | |
794 | 956 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl) |
791 | 957 { |
958 if (content.size() == 0) | |
959 { | |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
960 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0)); |
791 | 961 } |
962 else | |
963 { | |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
964 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size())); |
791 | 965 } |
966 } | |
792 | 967 |
968 | |
794 | 969 ParsedDicomFile::ParsedDicomFile(ParsedDicomFile& other) : |
970 pimpl_(new PImpl) | |
792 | 971 { |
794 | 972 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.pimpl_->file_->clone())); |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
973 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
974 // Create a new instance-level identifier |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
975 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
792 | 976 } |
977 | |
978 | |
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
979 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl) |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
980 { |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
981 pimpl_->file_.reset(new DcmFileFormat(&dicom)); |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
982 } |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
983 |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
984 |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
985 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl) |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
986 { |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
987 pimpl_->file_.reset(new DcmFileFormat(dicom)); |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
988 } |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
989 |
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
990 |
792 | 991 ParsedDicomFile::~ParsedDicomFile() |
992 { | |
794 | 993 delete pimpl_; |
792 | 994 } |
995 | |
793 | 996 |
1824
b530c3dfe2a6
refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
997 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const |
793 | 998 { |
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
999 return *pimpl_->file_.get(); |
793 | 1000 } |
1001 | |
1002 | |
1003 ParsedDicomFile* ParsedDicomFile::Clone() | |
1004 { | |
794 | 1005 return new ParsedDicomFile(*this); |
793 | 1006 } |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1007 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1008 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1009 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme) |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1010 { |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1616
diff
changeset
|
1011 std::string mime, content; |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1012 if (!Toolbox::DecodeDataUriScheme(mime, content, dataUriScheme)) |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1013 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1014 return false; |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1015 } |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
1016 |
1562 | 1017 Toolbox::ToLowerCase(mime); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1018 |
1781
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1019 if (mime == "image/png" || |
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1020 mime == "image/jpeg") |
1562 | 1021 { |
1022 EmbedImage(mime, content); | |
1023 } | |
1024 else if (mime == "application/pdf") | |
1025 { | |
1026 EmbedPdf(content); | |
1027 } | |
1028 else | |
1029 { | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
1030 LOG(ERROR) << "Unsupported MIME type for the content of a new DICOM file: " << mime; |
1562 | 1031 throw OrthancException(ErrorCode_NotImplemented); |
1032 } | |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1033 |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1034 return true; |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1035 } |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1036 |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1037 |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1038 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1039 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1040 if (!EmbedContentInternal(dataUriScheme)) |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1041 { |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1042 throw OrthancException(ErrorCode_BadFileFormat); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1043 } |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1044 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1045 |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1046 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1047 void ParsedDicomFile::EmbedImage(const std::string& mime, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1048 const std::string& content) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1049 { |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1050 if (mime == "image/png") |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1051 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1052 PngReader reader; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1053 reader.ReadFromMemory(content); |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1054 EmbedImage(reader); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1055 } |
1781
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1056 else if (mime == "image/jpeg") |
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1057 { |
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1058 JpegReader reader; |
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1059 reader.ReadFromMemory(content); |
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1060 EmbedImage(reader); |
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
1061 } |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1062 else |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1063 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1064 throw OrthancException(ErrorCode_NotImplemented); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1065 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1066 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1067 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1068 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1069 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1070 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1071 if (accessor.GetFormat() != PixelFormat_Grayscale8 && |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1072 accessor.GetFormat() != PixelFormat_Grayscale16 && |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1073 accessor.GetFormat() != PixelFormat_SignedGrayscale16 && |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1074 accessor.GetFormat() != PixelFormat_RGB24 && |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1075 accessor.GetFormat() != PixelFormat_RGBA32) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1076 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1077 throw OrthancException(ErrorCode_NotImplemented); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1078 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1079 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1080 InvalidateCache(); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1081 |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1082 if (accessor.GetFormat() == PixelFormat_RGBA32) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1083 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1084 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM"; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1085 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1086 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1087 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1088 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1089 Remove(DICOM_TAG_PIXEL_DATA); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1090 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth())); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1091 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight())); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1092 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1093 ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1"); |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1094 |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1095 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16) |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1096 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1097 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1"); |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1098 } |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1099 else |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1100 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1101 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1102 } |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1103 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1104 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1105 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1106 |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1107 unsigned int bytesPerPixel = 0; |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1108 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1109 switch (accessor.GetFormat()) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1110 { |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1111 case PixelFormat_Grayscale8: |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1112 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1113 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1114 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1115 bytesPerPixel = 1; |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1116 break; |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1117 |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1118 case PixelFormat_RGB24: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1119 case PixelFormat_RGBA32: |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1120 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1121 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1122 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1123 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1124 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1125 bytesPerPixel = 3; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1126 break; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1127 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1128 case PixelFormat_Grayscale16: |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1129 case PixelFormat_SignedGrayscale16: |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1130 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1131 ReplacePlainString(DICOM_TAG_BITS_STORED, "16"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1132 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15"); |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1133 bytesPerPixel = 2; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1134 break; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1135 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1136 default: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1137 throw OrthancException(ErrorCode_NotImplemented); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1138 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1139 |
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1140 assert(bytesPerPixel != 0); |
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1141 |
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1142 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(), |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1143 DICOM_TAG_PIXEL_DATA.GetElement()); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1144 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1145 std::auto_ptr<DcmPixelData> pixels(new DcmPixelData(key)); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1146 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1147 unsigned int pitch = accessor.GetWidth() * bytesPerPixel; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1148 Uint8* target = NULL; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1149 pixels->createUint8Array(accessor.GetHeight() * pitch, target); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1150 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1151 for (unsigned int y = 0; y < accessor.GetHeight(); y++) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1152 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1153 switch (accessor.GetFormat()) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1154 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1155 case PixelFormat_RGB24: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1156 case PixelFormat_Grayscale8: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1157 case PixelFormat_Grayscale16: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1158 case PixelFormat_SignedGrayscale16: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1159 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1160 memcpy(target, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1161 target += pitch; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1162 break; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1163 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1164 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1165 case PixelFormat_RGBA32: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1166 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1167 // The alpha channel is not supported by the DICOM standard |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1168 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1169 for (unsigned int x = 0; x < accessor.GetWidth(); x++, target += 3, source += 4) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1170 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1171 target[0] = source[0]; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1172 target[1] = source[1]; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1173 target[2] = source[2]; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1174 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1175 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1176 break; |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1177 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1178 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1179 default: |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1180 throw OrthancException(ErrorCode_NotImplemented); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1181 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1182 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1183 |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1184 if (!pimpl_->file_->getDataset()->insert(pixels.release(), false, false).good()) |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1185 { |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1186 throw OrthancException(ErrorCode_InternalError); |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1187 } |
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1188 } |
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1189 |
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1190 |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1191 Encoding ParsedDicomFile::GetEncoding() const |
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1192 { |
1928
84c7eaeb5244
Configuration::GetDefaultEncoding
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1193 return FromDcmtkBridge::DetectEncoding(*pimpl_->file_->getDataset(), |
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Configuration::GetDefaultEncoding
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|
1194 Configuration::GetDefaultEncoding()); |
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1195 } |
1090
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1196 |
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1197 |
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|
1198 void ParsedDicomFile::SetEncoding(Encoding encoding) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1199 { |
1558
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fix encodings of newly created dicom files
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|
1200 if (encoding == Encoding_Windows1251) |
1090
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1201 { |
1558
124de28b32ed
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diff
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|
1202 // This Cyrillic codepage is not officially supported by the |
124de28b32ed
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1203 // DICOM standard. Do not set the SpecificCharacterSet tag. |
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1204 return; |
1090
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diff
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|
1205 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1206 |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
1207 std::string s = GetDicomSpecificCharacterSet(encoding); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1208 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s); |
1090
e494ceb8d763
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1209 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1018
diff
changeset
|
1210 |
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1211 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1212 DicomToJsonFormat format, |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1213 DicomToJsonFlags flags, |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1214 unsigned int maxStringLength) |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1215 { |
2126 | 1216 FromDcmtkBridge::ExtractDicomAsJson(target, *pimpl_->file_->getDataset(), |
2131 | 1217 format, flags, maxStringLength, Configuration::GetDefaultEncoding()); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1218 } |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1219 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1220 |
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1221 void ParsedDicomFile::DatasetToJson(Json::Value& target) |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1222 { |
2131 | 1223 Configuration::ExtractDicomAsJson(target, *pimpl_->file_->getDataset()); |
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1224 } |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1225 |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1226 |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1227 void ParsedDicomFile::HeaderToJson(Json::Value& target, |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1228 DicomToJsonFormat format) |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1229 { |
2126 | 1230 FromDcmtkBridge::ExtractHeaderAsJson(target, *pimpl_->file_->getMetaInfo(), format, DicomToJsonFlags_None, 0); |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1231 } |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1232 |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1233 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1234 bool ParsedDicomFile::HasTag(const DicomTag& tag) const |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1235 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1236 DcmTag key(tag.GetGroup(), tag.GetElement()); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1237 return pimpl_->file_->getDataset()->tagExists(key); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1238 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1239 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1240 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1241 void ParsedDicomFile::EmbedPdf(const std::string& pdf) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1242 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1243 if (pdf.size() < 5 || // (*) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1244 strncmp("%PDF-", pdf.c_str(), 5) != 0) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1245 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1246 LOG(ERROR) << "Not a PDF file"; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1247 throw OrthancException(ErrorCode_BadFileFormat); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1248 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1249 |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1250 InvalidateCache(); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1251 |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1252 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1253 ReplacePlainString(FromDcmtkBridge::Convert(DCM_Modality), "OT"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1254 ReplacePlainString(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1255 ReplacePlainString(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), "application/pdf"); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1256 //ReplacePlainString(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1"); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1257 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1258 std::auto_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument)); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1259 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1260 size_t s = pdf.size(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1261 if (s & 1) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1262 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1263 // The size of the buffer must be even |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1264 s += 1; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1265 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1266 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1267 Uint8* bytes = NULL; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1268 OFCondition result = element->createUint8Array(s, bytes); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1269 if (!result.good() || bytes == NULL) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1270 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1271 throw OrthancException(ErrorCode_NotEnoughMemory); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1272 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1273 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1274 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) ) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1275 bytes[s - 1] = 0; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1276 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1277 memcpy(bytes, pdf.c_str(), pdf.size()); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1278 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1279 DcmPolymorphOBOW* obj = element.release(); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1280 result = pimpl_->file_->getDataset()->insert(obj); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1281 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1282 if (!result.good()) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1283 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1284 delete obj; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1285 throw OrthancException(ErrorCode_NotEnoughMemory); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1286 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1287 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1288 |
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1289 |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1290 bool ParsedDicomFile::ExtractPdf(std::string& pdf) |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1291 { |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1292 std::string sop, mime; |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1293 |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1294 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) || |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1295 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) || |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1296 sop != UID_EncapsulatedPDFStorage || |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1297 mime != "application/pdf") |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1298 { |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1299 return false; |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1300 } |
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1301 |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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|
1302 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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1303 { |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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1304 return false; |
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1305 } |
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1306 |
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|
1307 // Strip the possible pad byte at the end of file, because the |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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1308 // encapsulated documents must always have an even length. The PDF |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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|
1309 // format expects files to end with %%EOF followed by CR/LF. If |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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1310 // the last character of the file is not a CR or LF, we assume it |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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|
1311 // is a pad byte and remove it. |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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1312 if (pdf.size() > 0) |
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1313 { |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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|
1314 char last = *pdf.rbegin(); |
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|
1315 |
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Preview of PDF files encapsulated in DICOM from Orthanc Explorer
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|
1316 if (last != 10 && last != 13) |
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|
1317 { |
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|
1318 pdf.resize(pdf.size() - 1); |
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1319 } |
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1320 } |
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1321 |
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|
1322 return true; |
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1323 } |
1662
09be34b2f30e
ParsedDicomFile::Convert()
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1324 |
09be34b2f30e
ParsedDicomFile::Convert()
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1325 |
1818
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ParsedDicomFile::CreateFromJson
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1326 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json, |
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ParsedDicomFile::CreateFromJson
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1327 DicomFromJsonFlags flags) |
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ParsedDicomFile::CreateFromJson
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1328 { |
2028 | 1329 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false; |
1330 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false; | |
1818
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ParsedDicomFile::CreateFromJson
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1331 |
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ParsedDicomFile::CreateFromJson
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1332 std::auto_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers)); |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1333 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, Configuration::GetDefaultEncoding())); |
1818
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ParsedDicomFile::CreateFromJson
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1334 |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
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|
1335 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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1336 |
1818
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ParsedDicomFile::CreateFromJson
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|
1337 for (size_t i = 0; i < tags.size(); i++) |
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ParsedDicomFile::CreateFromJson
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1338 { |
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ParsedDicomFile::CreateFromJson
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|
1339 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
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ParsedDicomFile::CreateFromJson
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1340 const Json::Value& value = json[tags[i]]; |
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ParsedDicomFile::CreateFromJson
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1341 |
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ParsedDicomFile::CreateFromJson
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|
1342 if (tag == DICOM_TAG_PIXEL_DATA || |
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ParsedDicomFile::CreateFromJson
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|
1343 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
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ParsedDicomFile::CreateFromJson
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1344 { |
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ParsedDicomFile::CreateFromJson
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|
1345 if (value.type() != Json::stringValue) |
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ParsedDicomFile::CreateFromJson
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|
1346 { |
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ParsedDicomFile::CreateFromJson
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|
1347 throw OrthancException(ErrorCode_BadRequest); |
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ParsedDicomFile::CreateFromJson
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|
1348 } |
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ParsedDicomFile::CreateFromJson
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1349 else |
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ParsedDicomFile::CreateFromJson
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1350 { |
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ParsedDicomFile::CreateFromJson
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1351 result->EmbedContent(value.asString()); |
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ParsedDicomFile::CreateFromJson
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1352 } |
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ParsedDicomFile::CreateFromJson
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1353 } |
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ParsedDicomFile::CreateFromJson
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1354 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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ParsedDicomFile::CreateFromJson
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1355 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
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1981
diff
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|
1356 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent); |
1818
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ParsedDicomFile::CreateFromJson
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1357 } |
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ParsedDicomFile::CreateFromJson
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|
1358 } |
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ParsedDicomFile::CreateFromJson
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|
1359 |
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ParsedDicomFile::CreateFromJson
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1360 return result.release(); |
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ParsedDicomFile::CreateFromJson
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|
1361 } |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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1362 |
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1363 |
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|
1364 void ParsedDicomFile::GetRawFrame(std::string& target, |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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|
1365 std::string& mime, |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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1913
diff
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|
1366 unsigned int frameId) |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1367 { |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1368 if (pimpl_->frameIndex_.get() == NULL) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1369 { |
1956 | 1370 pimpl_->frameIndex_.reset(new DicomFrameIndex(*pimpl_->file_)); |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1371 } |
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diff
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|
1372 |
6c73df12ca51
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diff
changeset
|
1373 pimpl_->frameIndex_->GetRawFrame(target, frameId); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1374 |
6c73df12ca51
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diff
changeset
|
1375 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer(); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1376 switch (transferSyntax) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1377 { |
1946
40b7a0176305
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1945
diff
changeset
|
1378 case EXS_JPEGProcess1: |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1379 mime = "image/jpeg"; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1380 break; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1381 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1382 case EXS_JPEG2000LosslessOnly: |
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diff
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|
1383 case EXS_JPEG2000: |
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diff
changeset
|
1384 mime = "image/jp2"; |
2016 | 1385 break; |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1386 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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parents:
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diff
changeset
|
1387 default: |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1388 mime = "application/octet-stream"; |
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diff
changeset
|
1389 break; |
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1390 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1391 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1392 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1393 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1394 void ParsedDicomFile::InvalidateCache() |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1395 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1396 pimpl_->frameIndex_.reset(NULL); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
changeset
|
1397 } |
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1398 |
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1399 |
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1400 unsigned int ParsedDicomFile::GetFramesCount() const |
533ff46e944b
return a single raw frame from DICOM videos
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parents:
1946
diff
changeset
|
1401 { |
1956 | 1402 return DicomFrameIndex::GetFramesCount(*pimpl_->file_); |
1950
533ff46e944b
return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1946
diff
changeset
|
1403 } |
2207
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2202
diff
changeset
|
1404 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2202
diff
changeset
|
1405 |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2202
diff
changeset
|
1406 void ParsedDicomFile::ChangeEncoding(Encoding target) |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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2202
diff
changeset
|
1407 { |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
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parents:
2202
diff
changeset
|
1408 Encoding source = GetEncoding(); |
6dc3bdb4088b
Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2202
diff
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|
1409 |
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1410 if (source != target) // Avoid unnecessary conversion |
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1411 { |
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1412 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(target)); |
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1413 FromDcmtkBridge::ChangeStringEncoding(*pimpl_->file_->getDataset(), source, target); |
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1414 } |
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1415 } |
2209
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1416 |
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1417 |
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1418 void ParsedDicomFile::ExtractDicomSummary(DicomMap& target) const |
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1419 { |
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1420 Configuration::ExtractDicomSummary(target, *pimpl_->file_->getDataset()); |
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1421 } |
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1422 |
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1423 |
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1424 void ParsedDicomFile::ExtractDicomAsJson(Json::Value& target) const |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1425 { |
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1426 Configuration::ExtractDicomAsJson(target, *pimpl_->file_->getDataset()); |
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1427 } |
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1428 |
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1429 |
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1430 bool ParsedDicomFile::LookupTransferSyntax(std::string& result) |
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1431 { |
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1432 return FromDcmtkBridge::LookupTransferSyntax(result, *pimpl_->file_); |
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1433 } |
2281
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1434 |
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1435 |
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1436 bool ParsedDicomFile::LookupPhotometricInterpretation(PhotometricInterpretation& result) const |
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1437 { |
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1438 DcmTagKey k(DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetGroup(), |
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1439 DICOM_TAG_PHOTOMETRIC_INTERPRETATION.GetElement()); |
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1440 |
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1441 DcmDataset& dataset = *pimpl_->file_->getDataset(); |
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1442 |
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1443 const char *c = NULL; |
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1444 if (dataset.findAndGetString(k, c).good() && |
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1445 c != NULL) |
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1446 { |
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1447 result = StringToPhotometricInterpretation(c); |
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1448 return true; |
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1449 } |
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1450 else |
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1451 { |
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1452 return false; |
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1453 } |
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1454 } |
790 | 1455 } |