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annotate OrthancServer/DicomInstanceToStore.cpp @ 2314:c54c9523adf8 issue-46-anonymization

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 12 Jul 2017 22:09:27 +0200
parents a3a65de1840f
children b8969010b534
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "DicomInstanceToStore.h"
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36
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37 #include "FromDcmtkBridge.h"
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38 #include "OrthancInitialization.h"
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39 #include "../Core/Logging.h"
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40
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41 #include <dcmtk/dcmdata/dcfilefo.h>
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42 #include <dcmtk/dcmdata/dcdeftag.h>
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43
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44
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45 namespace Orthanc
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46 {
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47 void DicomInstanceToStore::AddMetadata(ResourceType level,
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48 MetadataType metadata,
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49 const std::string& value)
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50 {
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51 metadata_[std::make_pair(level, metadata)] = value;
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52 }
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53
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54
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55 void DicomInstanceToStore::ComputeMissingInformation()
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56 {
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57 if (buffer_.HasContent() &&
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58 summary_.HasContent() &&
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59 json_.HasContent())
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60 {
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61 // Fine, everything is available
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62 return;
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63 }
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64
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65 if (!buffer_.HasContent())
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66 {
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67 if (!parsed_.HasContent())
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68 {
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69 if (!summary_.HasContent())
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70 {
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71 throw OrthancException(ErrorCode_NotImplemented);
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72 }
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73 else
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74 {
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75 parsed_.TakeOwnership(new ParsedDicomFile(summary_.GetConstContent()));
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76 }
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77 }
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78
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79 // Serialize the parsed DICOM file
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80 buffer_.Allocate();
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81 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer_.GetContent(),
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82 *parsed_.GetContent().GetDcmtkObject().getDataset()))
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83 {
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84 LOG(ERROR) << "Unable to serialize a DICOM file to a memory buffer";
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85 throw OrthancException(ErrorCode_InternalError);
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86 }
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87 }
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88
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89 if (summary_.HasContent() &&
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90 json_.HasContent())
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91 {
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92 return;
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93 }
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94
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95 // At this point, we know that the DICOM file is available as a
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96 // memory buffer, but that its summary or its JSON version is
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97 // missing
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98
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99 if (!parsed_.HasContent())
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100 {
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101 parsed_.TakeOwnership(new ParsedDicomFile(buffer_.GetConstContent()));
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102 }
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103
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104 // At this point, we have parsed the DICOM file
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105
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106 if (!summary_.HasContent())
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107 {
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108 summary_.Allocate();
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109 Configuration::ExtractDicomSummary(summary_.GetContent(),
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110 *parsed_.GetContent().GetDcmtkObject().getDataset());
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111 }
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112
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113 if (!json_.HasContent())
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114 {
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115 json_.Allocate();
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116 Configuration::ExtractDicomAsJson(json_.GetContent(),
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117 *parsed_.GetContent().GetDcmtkObject().getDataset());
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118 }
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119 }
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120
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121
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122
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123 const char* DicomInstanceToStore::GetBufferData()
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124 {
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125 ComputeMissingInformation();
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126
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127 if (!buffer_.HasContent())
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128 {
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129 throw OrthancException(ErrorCode_InternalError);
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130 }
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131
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132 if (buffer_.GetConstContent().size() == 0)
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133 {
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134 return NULL;
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135 }
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136 else
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137 {
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138 return buffer_.GetConstContent().c_str();
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139 }
1003
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140 }
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parents:
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141
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142
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143 size_t DicomInstanceToStore::GetBufferSize()
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144 {
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145 ComputeMissingInformation();
1004
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146
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diff changeset
147 if (!buffer_.HasContent())
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148 {
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149 throw OrthancException(ErrorCode_InternalError);
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150 }
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151
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152 return buffer_.GetConstContent().size();
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153 }
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154
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155
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156 const DicomMap& DicomInstanceToStore::GetSummary()
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157 {
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158 ComputeMissingInformation();
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159
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diff changeset
160 if (!summary_.HasContent())
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161 {
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162 throw OrthancException(ErrorCode_InternalError);
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163 }
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164
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165 return summary_.GetConstContent();
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166 }
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167
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168
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diff changeset
169 const Json::Value& DicomInstanceToStore::GetJson()
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170 {
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171 ComputeMissingInformation();
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172
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173 if (!json_.HasContent())
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174 {
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175 throw OrthancException(ErrorCode_InternalError);
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176 }
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177
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178 return json_.GetConstContent();
1003
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179 }
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180
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181
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182
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183 void DicomInstanceToStore::GetOriginInformation(Json::Value& result) const
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184 {
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185 result = Json::objectValue;
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186 result["RequestOrigin"] = EnumerationToString(origin_);
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187
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188 switch (origin_)
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189 {
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190 case RequestOrigin_Unknown:
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191 {
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192 // None of the methods "SetDicomProtocolOrigin()", "SetHttpOrigin()",
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193 // "SetLuaOrigin()" or "SetPluginsOrigin()" was called!
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194 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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195 }
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196
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197 case RequestOrigin_DicomProtocol:
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198 {
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199 result["RemoteIp"] = remoteIp_;
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200 result["RemoteAet"] = dicomRemoteAet_;
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201 result["CalledAet"] = dicomCalledAet_;
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202 break;
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203 }
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204
1823
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diff changeset
205 case RequestOrigin_RestApi:
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206 {
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diff changeset
207 result["RemoteIp"] = remoteIp_;
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208 result["Username"] = httpUsername_;
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209 break;
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210 }
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211
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diff changeset
212 case RequestOrigin_Lua:
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213 case RequestOrigin_Plugins:
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diff changeset
214 {
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215 // No additional information available for these kinds of requests
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diff changeset
216 break;
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parents: 1486
diff changeset
217 }
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diff changeset
218
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diff changeset
219 default:
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diff changeset
220 throw OrthancException(ErrorCode_InternalError);
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parents: 1486
diff changeset
221 }
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diff changeset
222 }
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parents: 1486
diff changeset
223
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diff changeset
224
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diff changeset
225 void DicomInstanceToStore::SetDicomProtocolOrigin(const char* remoteIp,
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diff changeset
226 const char* remoteAet,
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diff changeset
227 const char* calledAet)
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diff changeset
228 {
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diff changeset
229 origin_ = RequestOrigin_DicomProtocol;
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diff changeset
230 remoteIp_ = remoteIp;
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diff changeset
231 dicomRemoteAet_ = remoteAet;
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parents: 1486
diff changeset
232 dicomCalledAet_ = calledAet;
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diff changeset
233 }
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parents: 1486
diff changeset
234
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diff changeset
235 void DicomInstanceToStore::SetRestOrigin(const RestApiCall& call)
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diff changeset
236 {
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diff changeset
237 origin_ = call.GetRequestOrigin();
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diff changeset
238
1823
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parents: 1822
diff changeset
239 if (origin_ == RequestOrigin_RestApi)
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diff changeset
240 {
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diff changeset
241 remoteIp_ = call.GetRemoteIp();
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diff changeset
242 httpUsername_ = call.GetUsername();
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parents: 1486
diff changeset
243 }
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diff changeset
244 }
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parents: 1486
diff changeset
245
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diff changeset
246 void DicomInstanceToStore::SetHttpOrigin(const char* remoteIp,
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diff changeset
247 const char* username)
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diff changeset
248 {
1823
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diff changeset
249 origin_ = RequestOrigin_RestApi;
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diff changeset
250 remoteIp_ = remoteIp;
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diff changeset
251 httpUsername_ = username;
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diff changeset
252 }
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diff changeset
253
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diff changeset
254 void DicomInstanceToStore::SetLuaOrigin()
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diff changeset
255 {
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diff changeset
256 origin_ = RequestOrigin_Lua;
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diff changeset
257 }
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diff changeset
258
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diff changeset
259 void DicomInstanceToStore::SetPluginsOrigin()
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diff changeset
260 {
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diff changeset
261 origin_ = RequestOrigin_Plugins;
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diff changeset
262 }
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diff changeset
263
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diff changeset
264 const char* DicomInstanceToStore::GetRemoteAet() const
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diff changeset
265 {
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diff changeset
266 if (origin_ == RequestOrigin_DicomProtocol)
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parents: 1486
diff changeset
267 {
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diff changeset
268 return dicomRemoteAet_.c_str();
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parents: 1486
diff changeset
269 }
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270 else
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271 {
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272 return "";
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273 }
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274 }
2189
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275
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276
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277 bool DicomInstanceToStore::LookupTransferSyntax(std::string& result)
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278 {
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279 ComputeMissingInformation();
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280
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281 DicomMap header;
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282 if (DicomMap::ParseDicomMetaInformation(header, GetBufferData(), GetBufferSize()))
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283 {
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284 const DicomValue* value = header.TestAndGetValue(DICOM_TAG_TRANSFER_SYNTAX_UID);
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285 if (value != NULL &&
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286 !value->IsBinary() &&
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287 !value->IsNull())
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288 {
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289 result = Toolbox::StripSpaces(value->GetContent());
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290 return true;
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291 }
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292 }
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293
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294 return false;
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295 }
1003
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296 }