Mercurial > hg > orthanc

annotate OrthancServer/ServerIndex.cpp @ 2826:c277e0421200

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unit testing of overwriting
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 19 Sep 2018 16:06:41 +0200
parents 8aa6aef11b70
children e5e3253a1164
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "ServerIndex.h"
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36
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37 #ifndef NOMINMAX
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38 #define NOMINMAX
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39 #endif
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40
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41 #include "ServerIndexChange.h"
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42 #include "EmbeddedResources.h"
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43 #include "OrthancInitialization.h"
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44 #include "../Core/DicomParsing/ParsedDicomFile.h"
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45 #include "ServerToolbox.h"
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46 #include "../Core/Toolbox.h"
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47 #include "../Core/Logging.h"
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48 #include "../Core/DicomFormat/DicomArray.h"
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49
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h"
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51 #include "ServerContext.h"
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52 #include "DicomInstanceToStore.h"
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53 #include "Search/LookupResource.h"
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55 #include <boost/lexical_cast.hpp>
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56 #include <stdio.h>
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57
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58 static const uint64_t MEGA_BYTES = 1024 * 1024;
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59
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60 namespace Orthanc
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61 {
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62 class ServerIndex::Listener : public IDatabaseListener
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63 {
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64 private:
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65 struct FileToRemove
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66 {
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67 private:
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68 std::string uuid_;
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69 FileContentType type_;
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71 public:
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()),
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73 type_(info.GetContentType())
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74 {
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75 }
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77 const std::string& GetUuid() const
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78 {
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79 return uuid_;
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80 }
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81
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82 FileContentType GetContentType() const
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83 {
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84 return type_;
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85 }
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86 };
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87
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88 ServerContext& context_;
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89 bool hasRemainingLevel_;
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90 ResourceType remainingType_;
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91 std::string remainingPublicId_;
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92 std::list<FileToRemove> pendingFilesToRemove_;
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93 std::list<ServerIndexChange> pendingChanges_;
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94 uint64_t sizeOfFilesToRemove_;
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95 bool insideTransaction_;
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96
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97 void Reset()
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98 {
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99 sizeOfFilesToRemove_ = 0;
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100 hasRemainingLevel_ = false;
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101 pendingFilesToRemove_.clear();
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102 pendingChanges_.clear();
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103 }
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104
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105 public:
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106 Listener(ServerContext& context) : context_(context),
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107 insideTransaction_(false)
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108 {
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109 Reset();
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110 assert(ResourceType_Patient < ResourceType_Study &&
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111 ResourceType_Study < ResourceType_Series &&
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112 ResourceType_Series < ResourceType_Instance);
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113 }
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114
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115 void StartTransaction()
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116 {
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117 Reset();
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118 insideTransaction_ = true;
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119 }
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120
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121 void EndTransaction()
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122 {
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123 insideTransaction_ = false;
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124 }
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125
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126 uint64_t GetSizeOfFilesToRemove()
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127 {
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128 return sizeOfFilesToRemove_;
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129 }
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130
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131 void CommitFilesToRemove()
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132 {
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133 for (std::list<FileToRemove>::const_iterator
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134 it = pendingFilesToRemove_.begin();
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135 it != pendingFilesToRemove_.end(); ++it)
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136 {
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType());
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138 }
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139 }
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140
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141 void CommitChanges()
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142 {
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143 for (std::list<ServerIndexChange>::const_iterator
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144 it = pendingChanges_.begin();
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145 it != pendingChanges_.end(); ++it)
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146 {
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147 context_.SignalChange(*it);
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148 }
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149 }
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150
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151 virtual void SignalRemainingAncestor(ResourceType parentType,
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152 const std::string& publicId)
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153 {
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")";
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155
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156 if (hasRemainingLevel_)
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157 {
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158 if (parentType < remainingType_)
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159 {
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160 remainingType_ = parentType;
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161 remainingPublicId_ = publicId;
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162 }
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163 }
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164 else
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165 {
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166 hasRemainingLevel_ = true;
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167 remainingType_ = parentType;
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168 remainingPublicId_ = publicId;
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169 }
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170 }
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171
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172 virtual void SignalFileDeleted(const FileInfo& info)
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173 {
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174 assert(Toolbox::IsUuid(info.GetUuid()));
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175 pendingFilesToRemove_.push_back(FileToRemove(info));
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176 sizeOfFilesToRemove_ += info.GetCompressedSize();
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177 }
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178
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179 virtual void SignalChange(const ServerIndexChange& change)
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180 {
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type "
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182 << EnumerationToString(change.GetResourceType()) << ": "
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183 << EnumerationToString(change.GetChangeType());
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184
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185 if (insideTransaction_)
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186 {
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187 pendingChanges_.push_back(change);
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188 }
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189 else
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190 {
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191 context_.SignalChange(change);
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192 }
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193 }
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194
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195 bool HasRemainingLevel() const
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196 {
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197 return hasRemainingLevel_;
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198 }
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199
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200 ResourceType GetRemainingType() const
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201 {
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202 assert(HasRemainingLevel());
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203 return remainingType_;
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204 }
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205
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206 const std::string& GetRemainingPublicId() const
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207 {
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208 assert(HasRemainingLevel());
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209 return remainingPublicId_;
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210 }
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211 };
0
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212
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213
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214 class ServerIndex::Transaction
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215 {
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216 private:
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217 ServerIndex& index_;
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218 std::auto_ptr<SQLite::ITransaction> transaction_;
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219 bool isCommitted_;
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220
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221 public:
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222 Transaction(ServerIndex& index) :
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223 index_(index),
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224 isCommitted_(false)
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225 {
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226 transaction_.reset(index_.db_.StartTransaction());
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227 transaction_->Begin();
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228
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229 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize());
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230
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231 index_.listener_->StartTransaction();
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232 }
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233
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234 ~Transaction()
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235 {
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236 index_.listener_->EndTransaction();
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237
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238 if (!isCommitted_)
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239 {
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240 transaction_->Rollback();
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241 }
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242 }
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243
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244 void Commit(uint64_t sizeOfAddedFiles)
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245 {
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246 if (!isCommitted_)
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247 {
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248 transaction_->Commit();
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249
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250 // We can remove the files once the SQLite transaction has
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251 // been successfully committed. Some files might have to be
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252 // deleted because of recycling.
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253 index_.listener_->CommitFilesToRemove();
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254
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255 index_.currentStorageSize_ += sizeOfAddedFiles;
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256
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257 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove());
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258 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove();
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259
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260 // Send all the pending changes to the Orthanc plugins
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261 index_.listener_->CommitChanges();
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262
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263 isCommitted_ = true;
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264 }
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265 }
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266 };
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267
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268
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269 class ServerIndex::UnstableResourcePayload
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270 {
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271 private:
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272 ResourceType type_;
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273 std::string publicId_;
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274 boost::posix_time::ptime time_;
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275
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276 public:
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277 UnstableResourcePayload() : type_(ResourceType_Instance)
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278 {
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279 }
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280
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281 UnstableResourcePayload(Orthanc::ResourceType type,
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282 const std::string& publicId) :
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283 type_(type),
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284 publicId_(publicId)
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285 {
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286 time_ = boost::posix_time::second_clock::local_time();
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287 }
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288
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289 unsigned int GetAge() const
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290 {
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291 return (boost::posix_time::second_clock::local_time() - time_).total_seconds();
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292 }
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293
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294 ResourceType GetResourceType() const
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295 {
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296 return type_;
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297 }
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298
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299 const std::string& GetPublicId() const
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300 {
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301 return publicId_;
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302 }
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303 };
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304
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305
212
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306 bool ServerIndex::DeleteResource(Json::Value& target,
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307 const std::string& uuid,
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308 ResourceType expectedType)
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309 {
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310 boost::mutex::scoped_lock lock(mutex_);
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311
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312 Transaction t(*this);
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313
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314 int64_t id;
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315 ResourceType type;
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316 if (!db_.LookupResource(id, type, uuid) ||
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317 expectedType != type)
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318 {
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319 return false;
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320 }
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321
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322 db_.DeleteResource(id);
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323
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324 if (listener_->HasRemainingLevel())
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325 {
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326 ResourceType type = listener_->GetRemainingType();
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327 const std::string& uuid = listener_->GetRemainingPublicId();
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328
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329 target["RemainingAncestor"] = Json::Value(Json::objectValue);
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330 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid);
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331 target["RemainingAncestor"]["Type"] = EnumerationToString(type);
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332 target["RemainingAncestor"]["ID"] = uuid;
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333 }
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334 else
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335 {
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336 target["RemainingAncestor"] = Json::nullValue;
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337 }
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338
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339 t.Commit(0);
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340
0
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341 return true;
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342 }
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343
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344
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345 void ServerIndex::FlushThread(ServerIndex* that,
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346 unsigned int threadSleep)
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347 {
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348 // By default, wait for 10 seconds before flushing
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349 unsigned int sleep = 10;
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350
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351 try
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352 {
744
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353 boost::mutex::scoped_lock lock(that->mutex_);
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354 std::string sleepString;
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355
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356 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) &&
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357 Toolbox::IsInteger(sleepString))
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358 {
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359 sleep = boost::lexical_cast<unsigned int>(sleepString);
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360 }
511
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361 }
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362 catch (boost::bad_lexical_cast&)
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363 {
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364 }
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365
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366 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")";
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367
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368 unsigned int count = 0;
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369
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370 while (!that->done_)
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371 {
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372 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep));
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373 count++;
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374 if (count < sleep)
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375 {
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376 continue;
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377 }
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378
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379 Logging::Flush();
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380
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381 boost::mutex::scoped_lock lock(that->mutex_);
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382 that->db_.FlushToDisk();
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383 count = 0;
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384 }
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385
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386 LOG(INFO) << "Stopping the database flushing thread";
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387 }
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388
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389
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390 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db,
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391 int64_t series,
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392 const DicomMap& dicomSummary)
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393 {
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394 try
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395 {
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396 const DicomValue* value;
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397 const DicomValue* value2;
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398
433
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399 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL &&
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400 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL)
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401 {
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402 // Patch for series with temporal positions thanks to Will Ryder
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403 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent());
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404 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent());
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405 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions);
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406 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected);
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407 }
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408
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409 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL &&
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410 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL)
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diff changeset
411 {
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412 // Support of Cardio-PET images
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diff changeset
413 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent());
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diff changeset
414 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent());
433
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diff changeset
415 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices);
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diff changeset
416 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected);
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diff changeset
417 }
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diff changeset
418
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
419 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL)
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
420 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
421 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent());
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
422 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
423 }
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
424 catch (OrthancException&)
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
425 {
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
426 }
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
427 catch (boost::bad_lexical_cast&)
433
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
428 {
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
429 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
430 }
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
431
aa50783f9550 cardiopet
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 432
diff changeset
432
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
433
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
434
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
435 bool ServerIndex::GetMetadataAsInteger(int64_t& result,
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
436 int64_t id,
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
437 MetadataType type)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
438 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
439 std::string s;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
440 if (!db_.LookupMetadata(s, id, type))
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
441 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
442 return false;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
443 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
444
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
445 try
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
446 {
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
447 result = boost::lexical_cast<int64_t>(s);
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
448 return true;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
449 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
450 catch (boost::bad_lexical_cast&)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
451 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
452 return false;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
453 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
454 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
455
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
456
1297
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
457 void ServerIndex::LogChange(int64_t internalId,
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
458 ChangeType changeType,
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
459 ResourceType resourceType,
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
460 const std::string& publicId)
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
461 {
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
462 ServerIndexChange change(changeType, resourceType, publicId);
1300
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
463
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
464 if (changeType <= ChangeType_INTERNAL_LastLogged)
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
465 {
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
466 db_.LogChange(internalId, change);
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
467 }
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
468
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
469 assert(listener_.get() != NULL);
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
470 listener_->SignalChange(change);
1297
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
471 }
501432928727 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1294
diff changeset
472
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
473
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
474 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
475 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
476 std::string oldValue;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
477
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
478 if (db_.LookupGlobalProperty(oldValue, property))
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
479 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
480 uint64_t oldNumber;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
481
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
482 try
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
483 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
484 oldNumber = boost::lexical_cast<uint64_t>(oldValue);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
485 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1));
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
486 return oldNumber + 1;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
487 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
488 catch (boost::bad_lexical_cast&)
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
489 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
490 throw OrthancException(ErrorCode_InternalError);
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
491 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
492 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
493 else
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
494 {
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
495 // Initialize the sequence at "1"
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
496 db_.SetGlobalProperty(property, "1");
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
497 return 1;
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
498 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
499 }
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
500
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
501
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
502
1299
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
503 int64_t ServerIndex::CreateResource(const std::string& publicId,
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
504 ResourceType type)
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
505 {
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
506 int64_t id = db_.CreateResource(publicId, type);
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
507
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
508 ChangeType changeType;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
509 switch (type)
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
510 {
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
511 case ResourceType_Patient:
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
512 changeType = ChangeType_NewPatient;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
513 break;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
514
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
515 case ResourceType_Study:
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
516 changeType = ChangeType_NewStudy;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
517 break;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
518
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
519 case ResourceType_Series:
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
520 changeType = ChangeType_NewSeries;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
521 break;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
522
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
523 case ResourceType_Instance:
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
524 changeType = ChangeType_NewInstance;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
525 break;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
526
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
527 default:
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
528 throw OrthancException(ErrorCode_InternalError);
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
529 }
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
530
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
531 ServerIndexChange change(changeType, type, publicId);
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
532 db_.LogChange(id, change);
1300
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
533
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
534 assert(listener_.get() != NULL);
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
535 listener_->SignalChange(change);
919dfb2fb3fe DANGEROUS refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1299
diff changeset
536
1299
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
537 return id;
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
538 }
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
539
1286
b4acdb37e43b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1271
diff changeset
540
226
8a26a8e85edf refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 224
diff changeset
541 ServerIndex::ServerIndex(ServerContext& context,
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
542 IDatabaseWrapper& db,
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
543 unsigned int threadSleep) :
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
544 done_(false),
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
545 db_(db),
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
546 maximumStorageSize_(0),
2826
c277e0421200 unit testing of overwriting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
547 maximumPatients_(0),
c277e0421200 unit testing of overwriting
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
548 overwrite_(false)
186
f68c039b0571 preparing refactoring of ServerIndex
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 180
diff changeset
549 {
1432
0ac74fa21db8 rename IServerIndexListener as IDatabaseListener
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1368
diff changeset
550 listener_.reset(new Listener(context));
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
551 db_.SetListener(*listener_);
180
626777d01dc4 use of hashes to index dicom objects
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
552
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
553 currentStorageSize_ = db_.GetTotalCompressedSize();
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
554
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
555 // Initial recycling if the parameters have changed since the last
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
556 // execution of Orthanc
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
557 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
558
1306
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
559 if (db.HasFlushToDisk())
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
560 {
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
561 flushThread_ = boost::thread(FlushThread, this, threadSleep);
1306
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
562 }
8cd5784a6d80 IDatabaseWrapper::HasFlushToDisk()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1305
diff changeset
563
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
564 unstableResourcesMonitorThread_ = boost::thread
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
565 (UnstableResourcesMonitorThread, this, threadSleep);
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
566 }
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
567
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
568
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
569
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
570 ServerIndex::~ServerIndex()
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
571 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
572 if (!done_)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
573 {
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
574 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!";
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
575 Stop();
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
576 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
577 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
578
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
579
1453
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
580
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
581 void ServerIndex::Stop()
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
582 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
583 if (!done_)
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
584 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
585 done_ = true;
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
586
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
587 if (db_.HasFlushToDisk() &&
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
588 flushThread_.joinable())
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
589 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
590 flushThread_.join();
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
591 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
592
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
593 if (unstableResourcesMonitorThread_.joinable())
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
594 {
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
595 unstableResourcesMonitorThread_.join();
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
596 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
597 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
598 }
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
599
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
600
c0bdc47165ef code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1432
diff changeset
601
2188
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
602 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata,
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
603 int64_t instance,
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
604 MetadataType metadata,
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
605 const std::string& value)
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
606 {
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
607 db_.SetMetadata(instance, metadata, value);
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
608 instanceMetadata[metadata] = value;
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
609 }
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
610
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
611
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
612
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
613 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata,
1822
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
614 DicomInstanceToStore& instanceToStore,
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
615 const Attachments& attachments)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
616 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
617 boost::mutex::scoped_lock lock(mutex_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
618
1822
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
619 const DicomMap& dicomSummary = instanceToStore.GetSummary();
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
620 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata();
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
621
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
622 instanceMetadata.clear();
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
623
1822
9ed9458aa44f refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1773
diff changeset
624 DicomInstanceHasher hasher(instanceToStore.GetSummary());
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
625
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
626 try
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
627 {
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
628 Transaction t(*this);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
629
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
630 // Check whether this instance is already stored
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
631 {
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
632 ResourceType type;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
633 int64_t tmp;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
634 if (db_.LookupResource(tmp, type, hasher.HashInstance()))
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
635 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
636 assert(type == ResourceType_Instance);
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
637
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
638 if (overwrite_)
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
639 {
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
640 // Overwrite the old instance
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
641 LOG(INFO) << "Overwriting instance: " << hasher.HashInstance();
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
642 db_.DeleteResource(tmp);
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
643 }
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
644 else
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
645 {
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
646 // Do nothing if the instance already exists
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
647 db_.GetAllMetadata(instanceMetadata, tmp);
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
648 return StoreStatus_AlreadyStored;
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
649 }
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
650 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
651 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
652
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
653 // Ensure there is enough room in the storage for the new instance
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
654 uint64_t instanceSize = 0;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
655 for (Attachments::const_iterator it = attachments.begin();
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
656 it != attachments.end(); ++it)
268
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
657 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
658 instanceSize += it->GetCompressedSize();
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
659 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
660
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
661 Recycle(instanceSize, hasher.HashPatient());
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
662
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
663 // Create the instance
1299
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
664 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance);
2120
4b02ec79728a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2090
diff changeset
665 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary);
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
666
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
667 // Detect up to which level the patient/study/series/instance
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
668 // hierarchy must be created
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
669 int64_t patient = -1, study = -1, series = -1;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
670 bool isNewPatient = false;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
671 bool isNewStudy = false;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
672 bool isNewSeries = false;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
673
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
674 {
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
675 ResourceType dummy;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
676
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
677 if (db_.LookupResource(series, dummy, hasher.HashSeries()))
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
678 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
679 assert(dummy == ResourceType_Series);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
680 // The patient, the study and the series already exist
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
681
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
682 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) &&
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
683 db_.LookupResource(study, dummy, hasher.HashStudy()));
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
684 assert(ok);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
685 }
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
686 else if (db_.LookupResource(study, dummy, hasher.HashStudy()))
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
687 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
688 assert(dummy == ResourceType_Study);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
689
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
690 // New series: The patient and the study already exist
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
691 isNewSeries = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
692
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
693 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient());
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
694 assert(ok);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
695 }
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
696 else if (db_.LookupResource(patient, dummy, hasher.HashPatient()))
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
697 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
698 assert(dummy == ResourceType_Patient);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
699
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
700 // New study and series: The patient already exist
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
701 isNewStudy = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
702 isNewSeries = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
703 }
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
704 else
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
705 {
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
706 // New patient, study and series: Nothing exists
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
707 isNewPatient = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
708 isNewStudy = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
709 isNewSeries = true;
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
710 }
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
711 }
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
712
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
713 // Create the series if needed
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
714 if (isNewSeries)
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
715 {
1299
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
716 series = CreateResource(hasher.HashSeries(), ResourceType_Series);
2120
4b02ec79728a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2090
diff changeset
717 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
718 }
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
719
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
720 // Create the study if needed
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
721 if (isNewStudy)
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
722 {
1299
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
723 study = CreateResource(hasher.HashStudy(), ResourceType_Study);
2120
4b02ec79728a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2090
diff changeset
724 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
725 }
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
726
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
727 // Create the patient if needed
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
728 if (isNewPatient)
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
729 {
1299
4ce47e8ed0d2 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1297
diff changeset
730 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient);
2120
4b02ec79728a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2090
diff changeset
731 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
732 }
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
733
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
734 // Create the parent-to-child links
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
735 db_.AttachChild(series, instance);
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
736
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
737 if (isNewSeries)
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
738 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
739 db_.AttachChild(study, series);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
740 }
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
741
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
742 if (isNewStudy)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
743 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
744 db_.AttachChild(patient, study);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
745 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
746
432
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
747 // Sanity checks
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
748 assert(patient != -1);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
749 assert(study != -1);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
750 assert(series != -1);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
751 assert(instance != -1);
2b09d4ee86c6 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 431
diff changeset
752
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
753 // Attach the files to the newly created instance
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
754 for (Attachments::const_iterator it = attachments.begin();
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
755 it != attachments.end(); ++it)
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
756 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
757 db_.AddAttachment(instance, *it);
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
758 }
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
759
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
760 // Attach the user-specified metadata
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
761 for (MetadataMap::const_iterator
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
762 it = metadata.begin(); it != metadata.end(); ++it)
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
763 {
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
764 switch (it->first.first)
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
765 {
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
766 case ResourceType_Patient:
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
767 db_.SetMetadata(patient, it->first.second, it->second);
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
768 break;
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
769
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
770 case ResourceType_Study:
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
771 db_.SetMetadata(study, it->first.second, it->second);
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
772 break;
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
773
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
774 case ResourceType_Series:
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
775 db_.SetMetadata(series, it->first.second, it->second);
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
776 break;
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
777
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
778 case ResourceType_Instance:
2188
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
779 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second);
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
780 break;
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
781
1006
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
782 default:
649d47854314 proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1004
diff changeset
783 throw OrthancException(ErrorCode_ParameterOutOfRange);
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
784 }
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
785 }
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
786
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
787 // Attach the auto-computed metadata for the patient/study/series levels
2475
8cc3ca64a534 Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
788 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
789 db_.SetMetadata(series, MetadataType_LastUpdate, now);
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
790 db_.SetMetadata(study, MetadataType_LastUpdate, now);
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
791 db_.SetMetadata(patient, MetadataType_LastUpdate, now);
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
792
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
793 // Attach the auto-computed metadata for the instance level,
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
794 // reflecting these additions into the input metadata map
2188
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
795 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now);
2640
c691fcf66071 ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2573
diff changeset
796 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet,
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2640
diff changeset
797 instanceToStore.GetOrigin().GetRemoteAetC());
2189
c4b3259c8bce New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2188
diff changeset
798 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin,
2640
c691fcf66071 ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2573
diff changeset
799 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin()));
2726
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
800
1823
0ef4e6e66b56 "Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1822
diff changeset
801 {
2189
c4b3259c8bce New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2188
diff changeset
802 std::string s;
2726
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
803
2189
c4b3259c8bce New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2188
diff changeset
804 if (instanceToStore.LookupTransferSyntax(s))
c4b3259c8bce New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2188
diff changeset
805 {
2726
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
806 // New in Orthanc 1.2.0
2189
c4b3259c8bce New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2188
diff changeset
807 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s);
c4b3259c8bce New metadata automatically computed at the instance level: "TransferSyntax"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2188
diff changeset
808 }
2726
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
809
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
810 if (instanceToStore.GetOrigin().LookupRemoteIp(s))
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
811 {
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
812 // New in Orthanc 1.4.0
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
813 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteIp, s);
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
814 }
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
815
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
816 if (instanceToStore.GetOrigin().LookupCalledAet(s))
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
817 {
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
818 // New in Orthanc 1.4.0
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
819 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_CalledAet, s);
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
820 }
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
821
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
822 if (instanceToStore.GetOrigin().LookupHttpUsername(s))
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
823 {
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
824 // New in Orthanc 1.4.0
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
825 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_HttpUsername, s);
46061a91c88a new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2717
diff changeset
826 }
1823
0ef4e6e66b56 "Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1822
diff changeset
827 }
0ef4e6e66b56 "Origin" metadata for the instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1822
diff changeset
828
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
829 const DicomValue* value;
2208
90ea60bee5ff New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2189
diff changeset
830 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL &&
90ea60bee5ff New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2189
diff changeset
831 !value->IsNull() &&
90ea60bee5ff New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2189
diff changeset
832 !value->IsBinary())
90ea60bee5ff New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2189
diff changeset
833 {
90ea60bee5ff New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2189
diff changeset
834 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent());
90ea60bee5ff New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2189
diff changeset
835 }
90ea60bee5ff New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2189
diff changeset
836
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
837 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL ||
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
838 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
839 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
840 if (!value->IsNull() &&
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
841 !value->IsBinary())
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
842 {
2188
7cfc2e0383b3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
843 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent());
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
844 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
845 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
846
1004
a226e0959d8b DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1002
diff changeset
847 // Check whether the series of this new instance is now completed
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
848 if (isNewSeries)
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
849 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
850 ComputeExpectedNumberOfInstances(db_, series, dicomSummary);
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
851 }
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
852
205
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
853 SeriesStatus seriesStatus = GetSeriesStatus(series);
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
854 if (seriesStatus == SeriesStatus_Complete)
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
855 {
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
856 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries());
205
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
857 }
6ab754744446 logging of completed series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 204
diff changeset
858
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
859 // Mark the parent resources of this instance as unstable
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
860 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries());
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
861 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy());
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
862 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient());
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
863
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
864 t.Commit(instanceSize);
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
865
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
866 return StoreStatus_Success;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
867 }
62
a70bb32802ae renaming Server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 57
diff changeset
868 catch (OrthancException& e)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
869 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
870 LOG(ERROR) << "EXCEPTION [" << e.What() << "]";
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
871 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
872
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
873 return StoreStatus_Failure;
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
874 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
875
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
876
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
877 void ServerIndex::ComputeStatistics(Json::Value& target)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
878 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
879 boost::mutex::scoped_lock lock(mutex_);
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
880 target = Json::objectValue;
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
881
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
882 uint64_t cs = currentStorageSize_;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
883 assert(cs == db_.GetTotalCompressedSize());
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
884 uint64_t us = db_.GetTotalUncompressedSize();
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
885 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs);
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
886 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
887 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES);
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
888 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES);
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
889
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
890 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient));
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
891 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study));
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
892 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series));
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
893 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance));
238
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
894 }
e4148b0ab1d0 statistics URI
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 237
diff changeset
895
187
8e673a65564d refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 186
diff changeset
896
8e673a65564d refactoring of storing new instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 186
diff changeset
897
585
b2357f1f026f fix types
jodogne
parents: 521
diff changeset
898 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
899 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
900 // Get the expected number of instances in this series (from the metadata)
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
901 int64_t expected;
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
902 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances))
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
903 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
904 return SeriesStatus_Unknown;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
905 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
906
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
907 // Loop over the instances of this series
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
908 std::list<int64_t> children;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
909 db_.GetChildrenInternalId(children, id);
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
910
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
911 std::set<int64_t> instances;
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
912 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
913 it = children.begin(); it != children.end(); ++it)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
914 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
915 // Get the index of this instance in the series
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
916 int64_t index;
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
917 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries))
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
918 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
919 return SeriesStatus_Unknown;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
920 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
921
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
922 if (!(index > 0 && index <= expected))
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
923 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
924 // Out-of-range instance index
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
925 return SeriesStatus_Inconsistent;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
926 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
927
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
928 if (instances.find(index) != instances.end())
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
929 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
930 // Twice the same instance index
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
931 return SeriesStatus_Inconsistent;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
932 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
933
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
934 instances.insert(index);
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
935 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
936
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
937 if (static_cast<int64_t>(instances.size()) == expected)
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
938 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
939 return SeriesStatus_Complete;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
940 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
941 else
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
942 {
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
943 return SeriesStatus_Missing;
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
944 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
945 }
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
946
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
947
202
1650557bd81a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
948 void ServerIndex::MainDicomTagsToJson(Json::Value& target,
1668
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
949 int64_t resourceId,
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
950 ResourceType resourceType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
951 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
952 DicomMap tags;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
953 db_.GetMainDicomTags(tags, resourceId);
1676
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
954
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
955 if (resourceType == ResourceType_Study)
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
956 {
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
957 DicomMap t1, t2;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
958 tags.ExtractStudyInformation(t1);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
959 tags.ExtractPatientInformation(t2);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
960
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
961 target["MainDicomTags"] = Json::objectValue;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
962 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
963
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
964 target["PatientMainDicomTags"] = Json::objectValue;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
965 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
966 }
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
967 else
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
968 {
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
969 target["MainDicomTags"] = Json::objectValue;
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
970 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true);
f079f3efe33b patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1668
diff changeset
971 }
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
972 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
973
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
974 bool ServerIndex::LookupResource(Json::Value& result,
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
975 const std::string& publicId,
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
976 ResourceType expectedType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
977 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
978 result = Json::objectValue;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
979
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
980 boost::mutex::scoped_lock lock(mutex_);
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
981
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
982 // Lookup for the requested resource
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
983 int64_t id;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
984 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
985 if (!db_.LookupResource(id, type, publicId) ||
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
986 type != expectedType)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
987 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
988 return false;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
989 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
990
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
991 // Find the parent resource (if it exists)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
992 if (type != ResourceType_Patient)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
993 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
994 int64_t parentId;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
995 if (!db_.LookupParent(parentId, id))
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
996 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
997 throw OrthancException(ErrorCode_InternalError);
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
998 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
999
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1000 std::string parent = db_.GetPublicId(parentId);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1001
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1002 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1003 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1004 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1005 result["ParentPatient"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1006 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1007
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1008 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1009 result["ParentStudy"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1010 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1011
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1012 case ResourceType_Instance:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1013 result["ParentSeries"] = parent;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1014 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1015
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1016 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1017 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1018 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1019 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1020
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1021 // List the children resources
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1022 std::list<std::string> children;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1023 db_.GetChildrenPublicId(children, id);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1024
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1025 if (type != ResourceType_Instance)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1026 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1027 Json::Value c = Json::arrayValue;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1028
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1029 for (std::list<std::string>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1030 it = children.begin(); it != children.end(); ++it)
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1031 {
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1032 c.append(*it);
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1033 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1034
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1035 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1036 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1037 case ResourceType_Patient:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1038 result["Studies"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1039 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1040
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1041 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1042 result["Series"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1043 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1044
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1045 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1046 result["Instances"] = c;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1047 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1048
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1049 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1050 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1051 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1052 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1053
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1054 // Set the resource type
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1055 switch (type)
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1056 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1057 case ResourceType_Patient:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1058 result["Type"] = "Patient";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1059 break;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1060
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1061 case ResourceType_Study:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1062 result["Type"] = "Study";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1063 break;
199
dfa2899d9960 refactoring cont
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 198
diff changeset
1064
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1065 case ResourceType_Series:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1066 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1067 result["Type"] = "Series";
434
ccf3a0a43dac EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 433
diff changeset
1068 result["Status"] = EnumerationToString(GetSeriesStatus(id));
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1069
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1070 int64_t i;
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1071 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances))
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1072 result["ExpectedNumberOfInstances"] = static_cast<int>(i);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1073 else
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1074 result["ExpectedNumberOfInstances"] = Json::nullValue;
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1075
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1076 break;
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1077 }
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1078
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1079 case ResourceType_Instance:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1080 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1081 result["Type"] = "Instance";
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1082
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1083 FileInfo attachment;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1084 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom))
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1085 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1086 throw OrthancException(ErrorCode_InternalError);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1087 }
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1088
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1089 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize());
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1090 result["FileUuid"] = attachment.GetUuid();
200
9c58b2b03cf0 refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 199
diff changeset
1091
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1092 int64_t i;
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1093 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries))
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
1094 result["IndexInSeries"] = static_cast<int>(i);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1095 else
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1096 result["IndexInSeries"] = Json::nullValue;
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1097
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1098 break;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1099 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1100
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1101 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1102 throw OrthancException(ErrorCode_InternalError);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1103 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1104
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1105 // Record the remaining information
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1106 result["ID"] = publicId;
1668
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
1107 MainDicomTagsToJson(result, id, type);
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1108
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1109 std::string tmp;
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1110
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1111 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1112 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1113 result["AnonymizedFrom"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1114 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1115
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1116 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1117 {
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1118 result["ModifiedFrom"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1119 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1120
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1121 if (type == ResourceType_Patient ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1122 type == ResourceType_Study ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1123 type == ResourceType_Series)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1124 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1125 result["IsStable"] = !unstableResources_.Contains(id);
1148
ac36589f699e LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1139
diff changeset
1126
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1127 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate))
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1128 {
1148
ac36589f699e LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1139
diff changeset
1129 result["LastUpdate"] = tmp;
1236
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1235
diff changeset
1130 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1131 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1132
198
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1133 return true;
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1134 }
663cc6c46d0a before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 197
diff changeset
1135
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1136
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1137 bool ServerIndex::LookupAttachment(FileInfo& attachment,
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1138 const std::string& instanceUuid,
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
1139 FileContentType contentType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1140 {
206
4453a010d0db flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 205
diff changeset
1141 boost::mutex::scoped_lock lock(mutex_);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1142
193
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
1143 int64_t id;
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
1144 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1145 if (!db_.LookupResource(id, type, instanceUuid))
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1146 {
1113
ba5c0908600c Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1102
diff changeset
1147 throw OrthancException(ErrorCode_UnknownResource);
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1148 }
193
a1b9d1e1497b failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
1149
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1150 if (db_.LookupAttachment(attachment, id, contentType))
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1151 {
233
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 232
diff changeset
1152 assert(attachment.GetContentType() == contentType);
232
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1153 return true;
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1154 }
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1155 else
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1156 {
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1157 return false;
5368bbe813cf refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 231
diff changeset
1158 }
192
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1159 }
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1160
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1161
c56dc32266e0 refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 191
diff changeset
1162
1354
3dd494f201a1 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1352
diff changeset
1163 void ServerIndex::GetAllUuids(std::list<std::string>& target,
190
b6cef9d45cc3 getallpublicids
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 189
diff changeset
1164 ResourceType resourceType)
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1165 {
1357
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
1166 boost::mutex::scoped_lock lock(mutex_);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
1167 db_.GetAllPublicIds(target, resourceType);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1168 }
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1169
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1170
1509
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1171 void ServerIndex::GetAllUuids(std::list<std::string>& target,
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1172 ResourceType resourceType,
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1173 size_t since,
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1174 size_t limit)
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1175 {
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1176 if (limit == 0)
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1177 {
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1178 target.clear();
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1179 return;
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1180 }
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1181
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1182 boost::mutex::scoped_lock lock(mutex_);
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1183 db_.GetAllPublicIds(target, resourceType, since, limit);
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1184 }
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1185
0586ed8897f1 limit and since arguments while retrieving DICOM resources in the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1486
diff changeset
1186
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1187 template <typename T>
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1188 static void FormatLog(Json::Value& target,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1189 const std::list<T>& log,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1190 const std::string& name,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1191 bool done,
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1192 int64_t since)
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1193 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1194 Json::Value items = Json::arrayValue;
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1195 for (typename std::list<T>::const_iterator
1304
7b6925b0890d cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1300
diff changeset
1196 it = log.begin(); it != log.end(); ++it)
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1197 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1198 Json::Value item;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1199 it->Format(item);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1200 items.append(item);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1201 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1202
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1203 target = Json::objectValue;
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1204 target[name] = items;
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1205 target["Done"] = done;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1206
1305
536515f87cb4 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1304
diff changeset
1207 int64_t last = (log.empty() ? since : log.back().GetSeq());
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1208 target["Last"] = static_cast<int>(last);
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1209 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1210
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1211
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1212 void ServerIndex::GetChanges(Json::Value& target,
204
7f4acf490179 changes api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 202
diff changeset
1213 int64_t since,
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1214 unsigned int maxResults)
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1215 {
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1216 std::list<ServerIndexChange> changes;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1217 bool done;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1218
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1219 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1220 boost::mutex::scoped_lock lock(mutex_);
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1221
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1222 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1223 // "GetLastChange()" involves calls to "GetPublicId()"
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1224 Transaction transaction(*this);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1225 db_.GetChanges(changes, done, since, maxResults);
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1226 transaction.Commit(0);
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1227 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1228
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1229 FormatLog(target, changes, "Changes", done, since);
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1230 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1231
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1232
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1233 void ServerIndex::GetLastChange(Json::Value& target)
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1234 {
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1235 std::list<ServerIndexChange> changes;
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1236
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1237 {
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1238 boost::mutex::scoped_lock lock(mutex_);
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1239
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1240 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1241 // "GetLastChange()" involves calls to "GetPublicId()"
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1242 Transaction transaction(*this);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1243 db_.GetLastChange(changes);
2717
d33659c28c6b fix missing transaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2668
diff changeset
1244 transaction.Commit(0);
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1245 }
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1246
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1247 FormatLog(target, changes, "Changes", true, 0);
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1248 }
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1249
1240
62c35e4b67db refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1239
diff changeset
1250
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1251 void ServerIndex::LogExportedResource(const std::string& publicId,
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1252 const std::string& remoteModality)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1253 {
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1254 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1255 Transaction transaction(*this);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1256
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1257 int64_t id;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1258 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1259 if (!db_.LookupResource(id, type, publicId))
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1260 {
2573
3372c5255333 StoreScuJob, Orthanc Explorer for jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2475
diff changeset
1261 throw OrthancException(ErrorCode_InexistentItem);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1262 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1263
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1264 std::string patientId;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1265 std::string studyInstanceUid;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1266 std::string seriesInstanceUid;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1267 std::string sopInstanceUid;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1268
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1269 int64_t currentId = id;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1270 ResourceType currentType = type;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1271
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1272 // Iteratively go up inside the patient/study/series/instance hierarchy
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1273 bool done = false;
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1274 while (!done)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1275 {
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1276 DicomMap map;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1277 db_.GetMainDicomTags(map, currentId);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1278
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1279 switch (currentType)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1280 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1281 case ResourceType_Patient:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1282 if (map.HasTag(DICOM_TAG_PATIENT_ID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1283 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1284 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1285 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1286 done = true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1287 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1288
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1289 case ResourceType_Study:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1290 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1291 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1292 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1293 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1294 currentType = ResourceType_Patient;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1295 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1296
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1297 case ResourceType_Series:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1298 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1299 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1300 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1301 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1302 currentType = ResourceType_Study;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1303 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1304
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1305 case ResourceType_Instance:
2090
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1306 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID))
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1307 {
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1308 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent();
1824a02e0951 improved robustness for files with no PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2069
diff changeset
1309 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1310 currentType = ResourceType_Series;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1311 break;
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1312
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1313 default:
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1314 throw OrthancException(ErrorCode_InternalError);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1315 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1316
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1317 // If we have not reached the Patient level, find the parent of
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1318 // the current resource
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1319 if (!done)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1320 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1321 bool ok = db_.LookupParent(currentId, currentId);
375
d1ea72f1c967 major fix of storescu
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 315
diff changeset
1322 assert(ok);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1323 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1324 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1325
1246
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1326 ExportedResource resource(-1,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1327 type,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1328 publicId,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1329 remoteModality,
2475
8cc3ca64a534 Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
1330 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */),
1246
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1331 patientId,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1332 studyInstanceUid,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1333 seriesInstanceUid,
54bf0f0245f4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1244
diff changeset
1334 sopInstanceUid);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1335
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1336 db_.LogExportedResource(resource);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1337 transaction.Commit(0);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1338 }
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1339
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1340
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1341 void ServerIndex::GetExportedResources(Json::Value& target,
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1342 int64_t since,
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1343 unsigned int maxResults)
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1344 {
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1345 std::list<ExportedResource> exported;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1346 bool done;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1347
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1348 {
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1349 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1350 db_.GetExportedResources(exported, done, since, maxResults);
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1351 }
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1352
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1353 FormatLog(target, exported, "Exports", done, since);
231
8098448bd827 export log
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 226
diff changeset
1354 }
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1355
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1356
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1357 void ServerIndex::GetLastExportedResource(Json::Value& target)
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1358 {
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1359 std::list<ExportedResource> exported;
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1360
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1361 {
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1362 boost::mutex::scoped_lock lock(mutex_);
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1363 db_.GetLastExportedResource(exported);
1244
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1364 }
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1365
a0e420c5f2b8 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1241
diff changeset
1366 FormatLog(target, exported, "Exports", true, 0);
237
16a4ac70bd8a last change and export
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 233
diff changeset
1367 }
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1368
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1369
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1370 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize)
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1371 {
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1372 if (maximumStorageSize_ != 0)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1373 {
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1374 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove();
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1375 assert(db_.GetTotalCompressedSize() == currentSize);
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1376
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1377 if (currentSize + instanceSize > maximumStorageSize_)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1378 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1379 return true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1380 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1381 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1382
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1383 if (maximumPatients_ != 0)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1384 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1385 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1386 if (patientCount > maximumPatients_)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1387 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1388 return true;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1389 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1390 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1391
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1392 return false;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1393 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1394
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1395
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1396 void ServerIndex::Recycle(uint64_t instanceSize,
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1397 const std::string& newPatientId)
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1398 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1399 if (!IsRecyclingNeeded(instanceSize))
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1400 {
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1401 return;
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1402 }
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1403
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1404 // Check whether other DICOM instances from this patient are
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1405 // already stored
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1406 int64_t patientToAvoid;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1407 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1408 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId);
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1409
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1410 if (hasPatientToAvoid && type != ResourceType_Patient)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1411 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1412 throw OrthancException(ErrorCode_InternalError);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1413 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1414
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1415 // Iteratively select patient to remove until there is enough
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1416 // space in the DICOM store
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1417 int64_t patientToRecycle;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1418 while (true)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1419 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1420 // If other instances of this patient are already in the store,
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1421 // we must avoid to recycle them
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1422 bool ok = hasPatientToAvoid ?
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1423 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) :
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1424 db_.SelectPatientToRecycle(patientToRecycle);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1425
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1426 if (!ok)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1427 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1428 throw OrthancException(ErrorCode_FullStorage);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1429 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1430
1331
77e129ba64e4 Prevent freeze on C-FIND if no DICOM tag is to be returned
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1310
diff changeset
1431 VLOG(1) << "Recycling one patient";
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1432 db_.DeleteResource(patientToRecycle);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1433
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1434 if (!IsRecyclingNeeded(instanceSize))
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1435 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1436 // OK, we're done
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1437 break;
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1438 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1439 }
268
4bc02e2254ec preparing ServerIndex for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 264
diff changeset
1440 }
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1441
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1442 void ServerIndex::SetMaximumPatientCount(unsigned int count)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1443 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1444 boost::mutex::scoped_lock lock(mutex_);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1445 maximumPatients_ = count;
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1446
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1447 if (count == 0)
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1448 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1449 LOG(WARNING) << "No limit on the number of stored patients";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1450 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1451 else
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1452 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1453 LOG(WARNING) << "At most " << count << " patients will be stored";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1454 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1455
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1456 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1457 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1458
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1459 void ServerIndex::SetMaximumStorageSize(uint64_t size)
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1460 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1461 boost::mutex::scoped_lock lock(mutex_);
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1462 maximumStorageSize_ = size;
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1463
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1464 if (size == 0)
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1465 {
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1466 LOG(WARNING) << "No limit on the size of the storage area";
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1467 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1468 else
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1469 {
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1470 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area";
270
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1471 }
e6a4c4329481 parameters for storage capacity
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 269
diff changeset
1472
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1473 StandaloneRecycling();
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1474 }
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1475
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
1476 void ServerIndex::SetOverwriteInstances(bool overwrite)
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
1477 {
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
1478 boost::mutex::scoped_lock lock(mutex_);
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
1479 overwrite_ = overwrite;
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
1480 }
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
1481
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2726
diff changeset
1482
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1483 void ServerIndex::StandaloneRecycling()
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1484 {
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1485 // WARNING: No mutex here, do not include this as a public method
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1486 Transaction t(*this);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1487 Recycle(0, "");
278
771f12042be9 more efficient determination of storage size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 273
diff changeset
1488 t.Commit(0);
269
f6fdf5abe751 recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 268
diff changeset
1489 }
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1490
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1491
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1492 bool ServerIndex::IsProtectedPatient(const std::string& publicId)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1493 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1494 boost::mutex::scoped_lock lock(mutex_);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1495
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1496 // Lookup for the requested resource
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1497 int64_t id;
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1498 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1499 if (!db_.LookupResource(id, type, publicId) ||
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1500 type != ResourceType_Patient)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1501 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1502 throw OrthancException(ErrorCode_ParameterOutOfRange);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1503 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1504
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1505 return db_.IsProtectedPatient(id);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1506 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1507
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1508
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1509 void ServerIndex::SetProtectedPatient(const std::string& publicId,
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1510 bool isProtected)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1511 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1512 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1513 Transaction transaction(*this);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1514
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1515 // Lookup for the requested resource
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1516 int64_t id;
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1517 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1518 if (!db_.LookupResource(id, type, publicId) ||
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1519 type != ResourceType_Patient)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1520 {
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1521 throw OrthancException(ErrorCode_ParameterOutOfRange);
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1522 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1523
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1524 db_.SetProtectedPatient(id, isProtected);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1525 transaction.Commit(0);
272
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1526
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1527 if (isProtected)
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1528 LOG(INFO) << "Patient " << publicId << " has been protected";
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1529 else
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1530 LOG(INFO) << "Patient " << publicId << " has been unprotected";
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1531 }
337c506461d2 protection from rest api
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 270
diff changeset
1532
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1533
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1534 void ServerIndex::GetChildren(std::list<std::string>& result,
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1535 const std::string& publicId)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1536 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1537 result.clear();
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1538
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1539 boost::mutex::scoped_lock lock(mutex_);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1540
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1541 ResourceType type;
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1542 int64_t resource;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1543 if (!db_.LookupResource(resource, type, publicId))
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1544 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1545 throw OrthancException(ErrorCode_UnknownResource);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1546 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1547
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1548 if (type == ResourceType_Instance)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1549 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1550 // An instance cannot have a child
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1551 throw OrthancException(ErrorCode_BadParameterType);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1552 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1553
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1554 std::list<int64_t> tmp;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1555 db_.GetChildrenInternalId(tmp, resource);
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1556
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1557 for (std::list<int64_t>::const_iterator
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1558 it = tmp.begin(); it != tmp.end(); ++it)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1559 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1560 result.push_back(db_.GetPublicId(*it));
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1561 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1562 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1563
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 704
diff changeset
1564
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1565 void ServerIndex::GetChildInstances(std::list<std::string>& result,
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1566 const std::string& publicId)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1567 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1568 result.clear();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1569
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1570 boost::mutex::scoped_lock lock(mutex_);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1571
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1572 ResourceType type;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1573 int64_t top;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1574 if (!db_.LookupResource(top, type, publicId))
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1575 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1576 throw OrthancException(ErrorCode_UnknownResource);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1577 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1578
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1579 if (type == ResourceType_Instance)
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1580 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1581 // The resource is already an instance: Do not go down the hierarchy
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1582 result.push_back(publicId);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1583 return;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1584 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1585
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1586 std::stack<int64_t> toExplore;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1587 toExplore.push(top);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1588
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1589 std::list<int64_t> tmp;
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1590
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1591 while (!toExplore.empty())
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1592 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1593 // Get the internal ID of the current resource
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1594 int64_t resource = toExplore.top();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1595 toExplore.pop();
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1596
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1597 if (db_.GetResourceType(resource) == ResourceType_Instance)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1598 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1599 result.push_back(db_.GetPublicId(resource));
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1600 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1601 else
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1602 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1603 // Tag all the children of this resource as to be explored
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1604 db_.GetChildrenInternalId(tmp, resource);
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1605 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1606 it = tmp.begin(); it != tmp.end(); ++it)
304
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1607 {
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1608 toExplore.push(*it);
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1609 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1610 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1611 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1612 }
4eea080e6e7a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 278
diff changeset
1613
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1614
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1615 void ServerIndex::SetMetadata(const std::string& publicId,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1616 MetadataType type,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1617 const std::string& value)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1618 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1619 boost::mutex::scoped_lock lock(mutex_);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1620 Transaction t(*this);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1621
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1622 ResourceType rtype;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1623 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1624 if (!db_.LookupResource(id, rtype, publicId))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1625 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1626 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1627 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1628
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1629 db_.SetMetadata(id, type, value);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1630
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1631 if (IsUserMetadata(type))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1632 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1633 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1634 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1635
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1636 t.Commit(0);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1637 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1638
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1639
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1640 void ServerIndex::DeleteMetadata(const std::string& publicId,
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1641 MetadataType type)
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1642 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1643 boost::mutex::scoped_lock lock(mutex_);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1644 Transaction t(*this);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1645
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1646 ResourceType rtype;
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1647 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1648 if (!db_.LookupResource(id, rtype, publicId))
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1649 {
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1650 throw OrthancException(ErrorCode_UnknownResource);
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1651 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1652
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1653 db_.DeleteMetadata(id, type);
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1654
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1655 if (IsUserMetadata(type))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1656 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1657 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1658 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1659
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
1660 t.Commit(0);
438
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1661 }
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1662
7bbe77cb9e12 DELETE metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 436
diff changeset
1663
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1664 bool ServerIndex::LookupMetadata(std::string& target,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1665 const std::string& publicId,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1666 MetadataType type)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1667 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1668 boost::mutex::scoped_lock lock(mutex_);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1669
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1670 ResourceType rtype;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1671 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1672 if (!db_.LookupResource(id, rtype, publicId))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1673 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1674 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1675 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1676
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1677 return db_.LookupMetadata(target, id, type);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1678 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1679
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1680
739
696dbb4fd390 api uniformization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 714
diff changeset
1681 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target,
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1682 const std::string& publicId)
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1683 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1684 boost::mutex::scoped_lock lock(mutex_);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1685
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1686 ResourceType rtype;
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1687 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1688 if (!db_.LookupResource(id, rtype, publicId))
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1689 {
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1690 throw OrthancException(ErrorCode_UnknownResource);
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1691 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1692
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1693 db_.ListAvailableMetadata(target, id);
436
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1694 }
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1695
d51186bf7602 read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 434
diff changeset
1696
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1697 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target,
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1698 const std::string& publicId,
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1699 ResourceType expectedType)
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1700 {
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1701 boost::mutex::scoped_lock lock(mutex_);
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1702
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1703 ResourceType type;
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1704 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1705 if (!db_.LookupResource(id, type, publicId) ||
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1706 expectedType != type)
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1707 {
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1708 throw OrthancException(ErrorCode_UnknownResource);
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1709 }
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1710
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1711 db_.ListAvailableAttachments(target, id);
697
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1712 }
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1713
dd1ce9a2844c access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 689
diff changeset
1714
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1715 bool ServerIndex::LookupParent(std::string& target,
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1716 const std::string& publicId)
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1717 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1718 boost::mutex::scoped_lock lock(mutex_);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1719
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1720 ResourceType type;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1721 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1722 if (!db_.LookupResource(id, type, publicId))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1723 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1724 throw OrthancException(ErrorCode_UnknownResource);
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1725 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1726
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1727 int64_t parentId;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1728 if (db_.LookupParent(parentId, id))
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1729 {
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1730 target = db_.GetPublicId(parentId);
306
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1731 return true;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1732 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1733 else
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1734 {
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1735 return false;
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1736 }
326d5a4a5af3 modification of instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 304
diff changeset
1737 }
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1738
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1739
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1740 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence)
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1741 {
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1742 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1743 Transaction transaction(*this);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1744
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1745 uint64_t seq = IncrementGlobalSequenceInternal(sequence);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1746 transaction.Commit(0);
311
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1747
26efccdff583 anonymisation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 310
diff changeset
1748 return seq;
310
6ab6cdeedf4e global sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 306
diff changeset
1749 }
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1750
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1751
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1752
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1753 void ServerIndex::LogChange(ChangeType changeType,
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1754 const std::string& publicId)
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1755 {
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1756 boost::mutex::scoped_lock lock(mutex_);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1757 Transaction transaction(*this);
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1758
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1759 int64_t id;
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1760 ResourceType type;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1761 if (!db_.LookupResource(id, type, publicId))
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1762 {
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1763 throw OrthancException(ErrorCode_UnknownResource);
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1764 }
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1765
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1766 LogChange(id, changeType, type, publicId);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1767 transaction.Commit(0);
315
fc856d175d18 modifications
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 311
diff changeset
1768 }
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1769
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1770
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1771 void ServerIndex::DeleteChanges()
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1772 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1773 boost::mutex::scoped_lock lock(mutex_);
1286
b4acdb37e43b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1271
diff changeset
1774 db_.ClearChanges();
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1775 }
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1776
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1777 void ServerIndex::DeleteExportedResources()
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1778 {
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1779 boost::mutex::scoped_lock lock(mutex_);
1286
b4acdb37e43b refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1271
diff changeset
1780 db_.ClearExportedResources();
413
47d63c941902 clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 399
diff changeset
1781 }
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1782
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1783
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1784 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1785 /* out */ uint64_t& uncompressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1786 /* out */ unsigned int& countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1787 /* out */ unsigned int& countSeries,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1788 /* out */ unsigned int& countInstances,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1789 /* in */ int64_t id,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1790 /* in */ ResourceType type)
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1791 {
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1792 std::stack<int64_t> toExplore;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1793 toExplore.push(id);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1794
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1795 countInstances = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1796 countSeries = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1797 countStudies = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1798 compressedSize = 0;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1799 uncompressedSize = 0;
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1800
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1801 while (!toExplore.empty())
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1802 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1803 // Get the internal ID of the current resource
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1804 int64_t resource = toExplore.top();
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1805 toExplore.pop();
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1806
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1807 ResourceType thisType = db_.GetResourceType(resource);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1808
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1809 std::list<FileContentType> f;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1810 db_.ListAvailableAttachments(f, resource);
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1811
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1812 for (std::list<FileContentType>::const_iterator
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1813 it = f.begin(); it != f.end(); ++it)
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1814 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1815 FileInfo attachment;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1816 if (db_.LookupAttachment(attachment, resource, *it))
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1817 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1818 compressedSize += attachment.GetCompressedSize();
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1819 uncompressedSize += attachment.GetUncompressedSize();
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1820 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1821 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
1822
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1823 if (thisType == ResourceType_Instance)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1824 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1825 countInstances++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1826 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1827 else
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1828 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1829 switch (thisType)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1830 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1831 case ResourceType_Study:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1832 countStudies++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1833 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1834
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1835 case ResourceType_Series:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1836 countSeries++;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1837 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1838
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1839 default:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1840 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1841 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1842
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1843 // Tag all the children of this resource as to be explored
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1844 std::list<int64_t> tmp;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1845 db_.GetChildrenInternalId(tmp, resource);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1846 for (std::list<int64_t>::const_iterator
656
08eca5d86aad fixes to cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 646
diff changeset
1847 it = tmp.begin(); it != tmp.end(); ++it)
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1848 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1849 toExplore.push(*it);
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1850 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1851 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1852 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1853
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1854 if (countStudies == 0)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1855 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1856 countStudies = 1;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1857 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1858
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1859 if (countSeries == 0)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1860 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1861 countSeries = 1;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1862 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1863 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1864
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1865
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1866
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1867 void ServerIndex::GetStatistics(Json::Value& target,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1868 const std::string& publicId)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1869 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1870 boost::mutex::scoped_lock lock(mutex_);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1871
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1872 ResourceType type;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1873 int64_t top;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1874 if (!db_.LookupResource(top, type, publicId))
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1875 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1876 throw OrthancException(ErrorCode_UnknownResource);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1877 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1878
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1879 uint64_t uncompressedSize;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1880 uint64_t compressedSize;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1881 unsigned int countStudies;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1882 unsigned int countSeries;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1883 unsigned int countInstances;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1884 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1885 countSeries, countInstances, top, type);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1886
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1887 target = Json::objectValue;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1888 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1889 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1890 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize);
1310
61ce8147f30d custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1306
diff changeset
1891 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES);
440
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1892
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1893 switch (type)
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1894 {
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1895 // Do NOT add "break" below this point!
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1896 case ResourceType_Patient:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1897 target["CountStudies"] = countStudies;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1898
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1899 case ResourceType_Study:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1900 target["CountSeries"] = countSeries;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1901
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1902 case ResourceType_Series:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1903 target["CountInstances"] = countInstances;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1904
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1905 case ResourceType_Instance:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1906 default:
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1907 break;
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1908 }
23e5b35e3c5c statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 438
diff changeset
1909 }
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1910
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1911
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1912 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1913 /* out */ uint64_t& uncompressedSize,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1914 /* out */ unsigned int& countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1915 /* out */ unsigned int& countSeries,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1916 /* out */ unsigned int& countInstances,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1917 const std::string& publicId)
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1918 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1919 boost::mutex::scoped_lock lock(mutex_);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1920
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1921 ResourceType type;
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1922 int64_t top;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
1923 if (!db_.LookupResource(top, type, publicId))
646
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1924 {
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1925 throw OrthancException(ErrorCode_UnknownResource);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1926 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1927
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1928 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies,
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1929 countSeries, countInstances, top, type);
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1930 }
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1931
fb49bf72ac2d fix issue 7
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 615
diff changeset
1932
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
1933 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that,
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
1934 unsigned int threadSleep)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1935 {
2069
fabf7820d1f1 New configuration options: "DicomScuTimeout" and "DicomScpTimeout" + validation of non-negative options
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
1936 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1937 if (stableAge <= 0)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1938 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1939 stableAge = 60;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1940 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1941
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1942 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")";
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1943
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1944 while (!that->done_)
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1945 {
2665
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
1946 // Check for stable resources each few seconds
389d050a2e66 fix deadlock, speed up unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
1947 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep));
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1948
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1949 boost::mutex::scoped_lock lock(that->mutex_);
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1950
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1951 while (!that->unstableResources_.IsEmpty() &&
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1952 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge))
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1953 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1954 // This DICOM resource has not received any new instance for
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1955 // some time. It can be considered as stable.
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1956
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1957 UnstableResourcePayload payload;
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1958 int64_t id = that->unstableResources_.RemoveOldest(payload);
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1959
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1960 // Ensure that the resource is still existing before logging the change
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
1961 if (that->db_.IsExistingResource(id))
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1962 {
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1963 switch (payload.GetResourceType())
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1964 {
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1965 case ResourceType_Patient:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1966 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1967 break;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1968
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1969 case ResourceType_Study:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1970 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1971 break;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1972
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1973 case ResourceType_Series:
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
1974 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId());
513
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1975 break;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1976
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1977 default:
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1978 throw OrthancException(ErrorCode_InternalError);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1979 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1980
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 511
diff changeset
1981 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id;
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1982 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1983 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1984 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1985
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1986 LOG(INFO) << "Closing the monitor thread for stable resources";
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1987 }
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1988
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1989
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1990 void ServerIndex::MarkAsUnstable(int64_t id,
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1991 Orthanc::ResourceType type,
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
1992 const std::string& publicId)
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1993 {
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1994 // WARNING: Before calling this method, "mutex_" must be locked.
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1995
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1996 assert(type == Orthanc::ResourceType_Patient ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1997 type == Orthanc::ResourceType_Study ||
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1998 type == Orthanc::ResourceType_Series);
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
1999
1177
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2000 UnstableResourcePayload payload(type, publicId);
5b2d8c280ac2 Plugins can monitor changes through callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1162
diff changeset
2001 unstableResources_.AddOrMakeMostRecent(id, payload);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2002 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id;
1189
6b9b02a16e99 NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1177
diff changeset
2003
1237
0f3716b88af7 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1236
diff changeset
2004 LogChange(id, ChangeType_NewChildInstance, type, publicId);
511
3b735fdf320b monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 440
diff changeset
2005 }
521
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
2006
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
2007
2c739f76d0bb lookup tag values
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 513
diff changeset
2008
1728
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2009 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result,
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2010 ResourceType level,
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2011 const DicomTag& tag,
4941494b5dd8 rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1727
diff changeset
2012 const std::string& value)
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2013 {
1727
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2014 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2015 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2016 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2017 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) ||
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1725
diff changeset
2018 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID));
1725
a7c05bbfaf6a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
2019
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2020 result.clear();
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2021
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2022 boost::mutex::scoped_lock lock(mutex_);
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2023
1746
d143db00a794 SetOfResources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1744
diff changeset
2024 LookupIdentifierQuery query(level);
d143db00a794 SetOfResources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1744
diff changeset
2025 query.AddConstraint(tag, IdentifierConstraintType_Equal, value);
d143db00a794 SetOfResources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1744
diff changeset
2026 query.Apply(result, db_);
615
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2027 }
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2028
ec0b7a51d7bd speed up find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 585
diff changeset
2029
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2030 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment,
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2031 const std::string& publicId)
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2032 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2033 boost::mutex::scoped_lock lock(mutex_);
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2034
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2035 Transaction t(*this);
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2036
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2037 ResourceType resourceType;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2038 int64_t resourceId;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
2039 if (!db_.LookupResource(resourceId, resourceType, publicId))
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2040 {
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2041 return StoreStatus_Failure; // Inexistent resource
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2042 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2043
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2044 // Remove possible previous attachment
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2045 db_.DeleteAttachment(resourceId, attachment.GetContentType());
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2046
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2047 // Locate the patient of the target resource
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2048 int64_t patientId = resourceId;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2049 for (;;)
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2050 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2051 int64_t parent;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2052 if (db_.LookupParent(parent, patientId))
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2053 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2054 // We have not reached the patient level yet
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2055 patientId = parent;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2056 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2057 else
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2058 {
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2059 // We have reached the patient level
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2060 break;
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2061 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2062 }
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2063
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2064 // Possibly apply the recycling mechanism while preserving this patient
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2065 assert(db_.GetResourceType(patientId) == ResourceType_Patient);
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2066 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId));
704
4789da60d655 recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 702
diff changeset
2067
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2068 db_.AddAttachment(resourceId, attachment);
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2069
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2070 if (IsUserContentType(attachment.GetContentType()))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2071 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2072 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2073 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2074
699
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2075 t.Commit(attachment.GetCompressedSize());
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2076
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2077 return StoreStatus_Success;
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2078 }
2929e17f8447 add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 697
diff changeset
2079
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2080
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2081 void ServerIndex::DeleteAttachment(const std::string& publicId,
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2082 FileContentType type)
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2083 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2084 boost::mutex::scoped_lock lock(mutex_);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2085 Transaction t(*this);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2086
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2087 ResourceType rtype;
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2088 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
2089 if (!db_.LookupResource(id, rtype, publicId))
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2090 {
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2091 throw OrthancException(ErrorCode_UnknownResource);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2092 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2093
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2094 db_.DeleteAttachment(id, type);
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2095
1773
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2096 if (IsUserContentType(type))
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2097 {
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2098 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId);
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2099 }
613df4362575 New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
2100
702
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2101 t.Commit(0);
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2102 }
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2103
7592a48e97e4 delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 701
diff changeset
2104
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2105 bool ServerIndex::GetMetadata(Json::Value& target,
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2106 const std::string& publicId)
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2107 {
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2108 boost::mutex::scoped_lock lock(mutex_);
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2109
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2110 target = Json::objectValue;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2111
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2112 ResourceType type;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2113 int64_t id;
1294
910478b2d4e4 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
2114 if (!db_.LookupResource(id, type, publicId))
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2115 {
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2116 return false;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2117 }
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2118
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2119 std::list<MetadataType> metadata;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2120 db_.ListAvailableMetadata(metadata, id);
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2121
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2122 for (std::list<MetadataType>::const_iterator
1304
7b6925b0890d cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1300
diff changeset
2123 it = metadata.begin(); it != metadata.end(); ++it)
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2124 {
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2125 std::string key = EnumerationToString(*it);
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
2126
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
2127 std::string value;
1247
32fcc5dc7562 abstraction
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1246
diff changeset
2128 if (!db_.LookupMetadata(value, id, *it))
1238
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
2129 {
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
2130 value.clear();
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
2131 }
6c07108ff1e2 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1237
diff changeset
2132
1002
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2133 target[key] = value;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2134 }
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2135
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2136 return true;
b067017a8a5b anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
2137 }
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2138
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2139
1249
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2140 void ServerIndex::SetGlobalProperty(GlobalProperty property,
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2141 const std::string& value)
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2142 {
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2143 boost::mutex::scoped_lock lock(mutex_);
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2144 db_.SetGlobalProperty(property, value);
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2145 }
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2146
40725595aaf0 Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1247
diff changeset
2147
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2148 bool ServerIndex::LookupGlobalProperty(std::string& value,
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2149 GlobalProperty property)
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2150 {
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2151 boost::mutex::scoped_lock lock(mutex_);
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2152 return db_.LookupGlobalProperty(value, property);
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2153 }
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2154
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2155
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2156 std::string ServerIndex::GetGlobalProperty(GlobalProperty property,
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2157 const std::string& defaultValue)
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2158 {
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2159 std::string value;
2668
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2160
d26dd081df97 saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2665
diff changeset
2161 if (LookupGlobalProperty(value, property))
1239
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2162 {
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2163 return value;
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2164 }
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2165 else
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2166 {
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2167 return defaultValue;
92c6b3b57699 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1238
diff changeset
2168 }
1218
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2169 }
efece308018e report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1198
diff changeset
2170
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2171
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2172 bool ServerIndex::GetMainDicomTags(DicomMap& result,
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2173 const std::string& publicId,
1677
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2174 ResourceType expectedType,
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2175 ResourceType levelOfInterest)
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2176 {
1677
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2177 // Yes, the following test could be shortened, but we wish to make it as clear as possible
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2178 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2179 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2180 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2181 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) &&
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2182 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance))
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2183 {
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2184 throw OrthancException(ErrorCode_ParameterOutOfRange);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2185 }
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2186
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2187 result.Clear();
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2188
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2189 boost::mutex::scoped_lock lock(mutex_);
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2190
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2191 // Lookup for the requested resource
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2192 int64_t id;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2193 ResourceType type;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2194 if (!db_.LookupResource(id, type, publicId) ||
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2195 type != expectedType)
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2196 {
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2197 return false;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2198 }
1677
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2199
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2200 if (type == ResourceType_Study)
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2201 {
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2202 DicomMap tmp;
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2203 db_.GetMainDicomTags(tmp, id);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2204
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2205 switch (levelOfInterest)
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2206 {
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2207 case ResourceType_Patient:
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2208 tmp.ExtractPatientInformation(result);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2209 return true;
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2210
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2211 case ResourceType_Study:
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2212 tmp.ExtractStudyInformation(result);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2213 return true;
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2214
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2215 default:
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2216 throw OrthancException(ErrorCode_InternalError);
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2217 }
a903d57d9f0c adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1676
diff changeset
2218 }
1352
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2219 else
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2220 {
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2221 db_.GetMainDicomTags(result, id);
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2222 return true;
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2223 }
382439943749 ResourceFinder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1331
diff changeset
2224 }
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2225
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2226
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2227 bool ServerIndex::LookupResourceType(ResourceType& type,
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2228 const std::string& publicId)
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2229 {
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2230 boost::mutex::scoped_lock lock(mutex_);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2231
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2232 int64_t id;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2233 return db_.LookupResource(id, type, publicId);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2234 }
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1509
diff changeset
2235
1668
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2236
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2237 unsigned int ServerIndex::GetDatabaseVersion()
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2238 {
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2239 boost::mutex::scoped_lock lock(mutex_);
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2240 return db_.GetDatabaseVersion();
de1413733c97 reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
2241 }
1750
55d52567bebb LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1747
diff changeset
2242
55d52567bebb LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1747
diff changeset
2243
1753
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2244 void ServerIndex::FindCandidates(std::vector<std::string>& resources,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2245 std::vector<std::string>& instances,
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1754
diff changeset
2246 const ::Orthanc::LookupResource& lookup)
1750
55d52567bebb LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1747
diff changeset
2247 {
1753
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2248 boost::mutex::scoped_lock lock(mutex_);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2249
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2250 std::list<int64_t> tmp;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2251 lookup.FindCandidates(tmp, db_);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2252
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2253 resources.resize(tmp.size());
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2254 instances.resize(tmp.size());
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2255
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2256 size_t pos = 0;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2257 for (std::list<int64_t>::const_iterator
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2258 it = tmp.begin(); it != tmp.end(); ++it, pos++)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2259 {
1754
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1753
diff changeset
2260 assert(db_.GetResourceType(*it) == lookup.GetLevel());
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1753
diff changeset
2261
1753
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2262 int64_t instance;
2120
4b02ec79728a refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2090
diff changeset
2263 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel()))
1753
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2264 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2265 throw OrthancException(ErrorCode_InternalError);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2266 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2267
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2268 resources[pos] = db_.GetPublicId(*it);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2269 instances[pos] = db_.GetPublicId(instance);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
2270 }
1750
55d52567bebb LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1747
diff changeset
2271 }
1898
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2272
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2273
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2274 bool ServerIndex::LookupParent(std::string& target,
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2275 const std::string& publicId,
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2276 ResourceType parentType)
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2277 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2278 boost::mutex::scoped_lock lock(mutex_);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2279
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2280 ResourceType type;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2281 int64_t id;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2282 if (!db_.LookupResource(id, type, publicId))
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2283 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2284 throw OrthancException(ErrorCode_UnknownResource);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2285 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2286
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2287 while (type != parentType)
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2288 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2289 int64_t parentId;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2290
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2291 if (type == ResourceType_Patient || // Cannot further go up in hierarchy
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2292 !db_.LookupParent(parentId, id))
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2293 {
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2294 return false;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2295 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2296
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2297 id = parentId;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2298 type = GetParentResourceType(type);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2299 }
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2300
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2301 target = db_.GetPublicId(id);
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2302 return true;
e018037d4d0e Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1823
diff changeset
2303 }
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2304
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2305
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2306 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2307 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2308 DicomMap summary;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2309 dicom.ExtractDicomSummary(summary);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2310
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2311 DicomInstanceHasher hasher(summary);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2312
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2313 boost::mutex::scoped_lock lock(mutex_);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2314
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2315 try
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2316 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2317 Transaction t(*this);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2318
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2319 int64_t patient = -1, study = -1, series = -1, instance = -1;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2320
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2321 ResourceType dummy;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2322 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2323 !db_.LookupResource(study, dummy, hasher.HashStudy()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2324 !db_.LookupResource(series, dummy, hasher.HashSeries()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2325 !db_.LookupResource(instance, dummy, hasher.HashInstance()) ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2326 patient == -1 ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2327 study == -1 ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2328 series == -1 ||
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2329 instance == -1)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2330 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2331 throw OrthancException(ErrorCode_InternalError);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2332 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2333
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2334 db_.ClearMainDicomTags(patient);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2335 db_.ClearMainDicomTags(study);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2336 db_.ClearMainDicomTags(series);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2337 db_.ClearMainDicomTags(instance);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2338
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2339 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2340 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2341 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2342 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2343
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2344 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2345 std::string s;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2346 if (dicom.LookupTransferSyntax(s))
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2347 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2348 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s);
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2349 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2350 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2351
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2352 const DicomValue* value;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2353 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2354 !value->IsNull() &&
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2355 !value->IsBinary())
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2356 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2357 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent());
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2358 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2359
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2360 t.Commit(0); // No change in the DB size
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2361 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2362 catch (OrthancException& e)
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2363 {
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2364 LOG(ERROR) << "EXCEPTION [" << e.What() << "]";
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2365 }
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
2366 }
0
3959d33612cc initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2367 }