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annotate OrthancFramework/Sources/DicomNetworking/DicomFindAnswers.cpp @ 5011:c014ab79fca5

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fixed /move documentation + improved error reporting
author Alain Mazy <am@osimis.io>
date Tue, 31 May 2022 09:36:00 +0200
parents 43e613a7756b
children 0ea402b4d901
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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24 #include "../PrecompiledHeaders.h"
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25 #include "DicomFindAnswers.h"
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27 #include "../DicomParsing/FromDcmtkBridge.h"
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28 #include "../OrthancException.h"
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29
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30 #include <memory>
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31 #include <dcmtk/dcmdata/dcfilefo.h>
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32 #include <boost/noncopyable.hpp>
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33
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34
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35 namespace Orthanc
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36 {
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37 void DicomFindAnswers::AddAnswerInternal(ParsedDicomFile* answer)
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38 {
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39 std::unique_ptr<ParsedDicomFile> protection(answer);
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40
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41 if (isWorklist_)
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42 {
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43 // These lines are necessary when serving worklists, otherwise
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44 // Orthanc does not behave as "wlmscpfs"
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45 protection->Remove(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID);
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46 protection->Remove(DICOM_TAG_SOP_INSTANCE_UID);
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47 }
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48
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49 protection->ChangeEncoding(encoding_);
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51 answers_.push_back(protection.release());
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52 }
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55 DicomFindAnswers::DicomFindAnswers(bool isWorklist) :
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56 encoding_(GetDefaultDicomEncoding()),
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57 isWorklist_(isWorklist),
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58 complete_(true)
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59 {
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60 }
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61
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62 DicomFindAnswers::~DicomFindAnswers()
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63 {
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64 Clear();
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65 }
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67 Encoding DicomFindAnswers::GetEncoding() const
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68 {
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69 return encoding_;
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70 }
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71
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73 void DicomFindAnswers::SetEncoding(Encoding encoding)
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74 {
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75 for (size_t i = 0; i < answers_.size(); i++)
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76 {
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77 assert(answers_[i] != NULL);
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78 answers_[i]->ChangeEncoding(encoding);
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79 }
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80
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81 encoding_ = encoding;
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82 }
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83
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84
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85 void DicomFindAnswers::SetWorklist(bool isWorklist)
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86 {
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87 if (answers_.empty())
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88 {
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89 isWorklist_ = isWorklist;
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90 }
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91 else
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92 {
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93 // This set of answers is not empty anymore, cannot change its type
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94 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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95 }
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96 }
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97
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98 bool DicomFindAnswers::IsWorklist() const
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99 {
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100 return isWorklist_;
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101 }
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102
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103
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104 void DicomFindAnswers::Clear()
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105 {
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106 for (size_t i = 0; i < answers_.size(); i++)
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107 {
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108 assert(answers_[i] != NULL);
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109 delete answers_[i];
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110 }
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111
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112 answers_.clear();
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113 }
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114
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115
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116 void DicomFindAnswers::Reserve(size_t size)
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117 {
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118 if (size > answers_.size())
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119 {
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120 answers_.reserve(size);
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121 }
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122 }
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123
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124
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125 void DicomFindAnswers::Add(const DicomMap& map)
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126 {
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127 // We use the permissive mode to be tolerant wrt. invalid DICOM
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128 // files that contain some tags with out-of-range values (such
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129 // tags are removed from the answers)
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130 AddAnswerInternal(new ParsedDicomFile(map, encoding_, true /* permissive */));
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131 //"" /* no private creator */));
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132 }
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133
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134
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135 void DicomFindAnswers::Add(const ParsedDicomFile& dicom)
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136 {
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137 AddAnswerInternal(dicom.Clone(true));
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138 }
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139
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140 void DicomFindAnswers::Add(const void* dicom,
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141 size_t size)
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142 {
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143 AddAnswerInternal(new ParsedDicomFile(dicom, size));
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144 }
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145
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146 size_t DicomFindAnswers::GetSize() const
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147 {
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148 return answers_.size();
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149 }
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150
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151
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152 ParsedDicomFile& DicomFindAnswers::GetAnswer(size_t index) const
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153 {
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154 if (index < answers_.size())
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155 {
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156 return *answers_[index];
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157 }
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158 else
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159 {
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160 throw OrthancException(ErrorCode_ParameterOutOfRange);
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161 }
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162 }
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163
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164
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165 DcmDataset* DicomFindAnswers::ExtractDcmDataset(size_t index) const
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166 {
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167 // As "DicomFindAnswers" stores its content using class
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168 // "ParsedDicomFile" (that internally uses "DcmFileFormat" from
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169 // DCMTK), the dataset can contain tags that are reserved if
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170 // storing the media on the disk, notably tag
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171 // "MediaStorageSOPClassUID" (0002,0002). In this function, we
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172 // remove all those tags whose group is below 0x0008. The
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173 // resulting data set is clean for emission in the C-FIND SCP.
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174
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175 // http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.html#sect_C.4.1.1.3
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176 // https://groups.google.com/d/msg/orthanc-users/D3kpPuX8yV0/_zgHOzkMEQAJ
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177
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178 DcmDataset& source = *GetAnswer(index).GetDcmtkObject().getDataset();
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179
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180 std::unique_ptr<DcmDataset> target(new DcmDataset);
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181
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182 for (unsigned long i = 0; i < source.card(); i++)
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183 {
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184 const DcmElement* element = source.getElement(i);
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185 assert(element != NULL);
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186
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187 if (element != NULL &&
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188 element->getTag().getGroup() >= 0x0008 &&
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189 element->getTag().getElement() != 0x0000)
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190 {
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191 target->insert(dynamic_cast<DcmElement*>(element->clone()));
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192 }
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193 }
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194
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195 return target.release();
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196 }
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197
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198
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199 void DicomFindAnswers::ToJson(Json::Value& target,
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200 size_t index,
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201 DicomToJsonFormat format) const
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202 {
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203 const ParsedDicomFile& answer = GetAnswer(index);
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204 answer.DatasetToJson(target, format, DicomToJsonFlags_None, 0);
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205 }
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206
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207
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208 void DicomFindAnswers::ToJson(Json::Value& target,
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209 DicomToJsonFormat format) const
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210 {
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211 target = Json::arrayValue;
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212
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213 for (size_t i = 0; i < GetSize(); i++)
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214 {
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215 Json::Value answer;
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216 ToJson(answer, i, format);
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217 target.append(answer);
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218 }
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219 }
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220
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221
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222 bool DicomFindAnswers::IsComplete() const
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223 {
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224 return complete_;
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225 }
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226
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227 void DicomFindAnswers::SetComplete(bool isComplete)
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228 {
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229 complete_ = isComplete;
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230 }
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231
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232
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233 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1
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234 void DicomFindAnswers::Add(ParsedDicomFile& dicom)
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235 {
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236 return Add(const_cast<const ParsedDicomFile&>(dicom));
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237 }
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238
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239 void DicomFindAnswers::ToJson(Json::Value& target,
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240 size_t index,
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241 bool simplify) const
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242 {
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243 DicomToJsonFormat format = (simplify ? DicomToJsonFormat_Human : DicomToJsonFormat_Full);
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244 ToJson(target, index, format);
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245 }
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246
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247
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248 void DicomFindAnswers::ToJson(Json::Value& target,
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249 bool simplify) const
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250 {
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251 DicomToJsonFormat format = (simplify ? DicomToJsonFormat_Human : DicomToJsonFormat_Full);
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252 ToJson(target, format);
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253 }
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254 #endif
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255 }