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annotate OrthancServer/ServerContext.h @ 3841:be7df7fe3d80

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avoid one memcpy of the DICOM buffer on "POST /instances"
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 16 Apr 2020 16:58:37 +0200
parents 1a346a4dc1b4
children aaaa442bfe39
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #pragma once
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35
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36 #include "IServerListener.h"
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37 #include "LuaScripting.h"
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38 #include "OrthancHttpHandler.h"
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39 #include "ServerIndex.h"
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40 #include "ServerJobs/IStorageCommitmentFactory.h"
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41
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42 #include "../Core/Cache/MemoryCache.h"
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43
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44
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45 namespace Orthanc
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46 {
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47 class DicomInstanceToStore;
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48 class IStorageArea;
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49 class JobsEngine;
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50 class MetricsRegistry;
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51 class OrthancPlugins;
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52 class ParsedDicomFile;
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53 class RestApiOutput;
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54 class SetOfInstancesJob;
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55 class SharedArchive;
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56 class SharedMessageQueue;
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57 class StorageCommitmentReports;
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58
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59
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60 /**
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61 * This class is responsible for maintaining the storage area on the
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62 * filesystem (including compression), as well as the index of the
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63 * DICOM store. It implements the required locking mechanisms.
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64 **/
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65 class ServerContext :
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66 public IStorageCommitmentFactory,
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67 private JobsRegistry::IObserver
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68 {
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69 public:
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70 class ILookupVisitor : public boost::noncopyable
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71 {
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72 public:
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73 virtual ~ILookupVisitor()
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74 {
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75 }
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76
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77 virtual bool IsDicomAsJsonNeeded() const = 0;
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78
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79 virtual void MarkAsComplete() = 0;
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80
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81 virtual void Visit(const std::string& publicId,
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82 const std::string& instanceId,
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83 const DicomMap& mainDicomTags,
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84 const Json::Value* dicomAsJson) = 0;
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85 };
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86
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87
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88 private:
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89 class LuaServerListener : public IServerListener
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90 {
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91 private:
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92 ServerContext& context_;
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93
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94 public:
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95 LuaServerListener(ServerContext& context) :
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96 context_(context)
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97 {
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98 }
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99
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100 virtual void SignalStoredInstance(const std::string& publicId,
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101 DicomInstanceToStore& instance,
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102 const Json::Value& simplifiedTags)
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103 {
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104 context_.mainLua_.SignalStoredInstance(publicId, instance, simplifiedTags);
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105 }
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106
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107 virtual void SignalChange(const ServerIndexChange& change)
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108 {
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109 context_.mainLua_.SignalChange(change);
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110 }
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111
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112 virtual bool FilterIncomingInstance(const DicomInstanceToStore& instance,
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113 const Json::Value& simplified)
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114 {
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115 return context_.filterLua_.FilterIncomingInstance(instance, simplified);
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116 }
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117 };
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118
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119 class DicomCacheProvider : public Deprecated::ICachePageProvider // TODO
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120 {
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121 private:
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122 ServerContext& context_;
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123
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124 public:
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125 DicomCacheProvider(ServerContext& context) : context_(context)
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126 {
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127 }
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128
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129 virtual IDynamicObject* Provide(const std::string& id);
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130 };
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131
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132 class ServerListener
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133 {
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134 private:
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135 IServerListener *listener_;
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136 std::string description_;
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137
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138 public:
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139 ServerListener(IServerListener& listener,
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140 const std::string& description) :
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141 listener_(&listener),
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142 description_(description)
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143 {
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144 }
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145
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146 IServerListener& GetListener()
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147 {
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148 return *listener_;
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149 }
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150
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151 const std::string& GetDescription()
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152 {
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153 return description_;
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154 }
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155 };
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156
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157 typedef std::list<ServerListener> ServerListeners;
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158
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159
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160 static void ChangeThread(ServerContext* that,
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161 unsigned int sleepDelay);
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162
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163 static void SaveJobsThread(ServerContext* that,
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164 unsigned int sleepDelay);
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165
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166 void ReadDicomAsJsonInternal(std::string& result,
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167 const std::string& instancePublicId);
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168
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169 void SaveJobsEngine();
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170
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171 virtual void SignalJobSubmitted(const std::string& jobId) ORTHANC_OVERRIDE;
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172
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173 virtual void SignalJobSuccess(const std::string& jobId) ORTHANC_OVERRIDE;
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174
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175 virtual void SignalJobFailure(const std::string& jobId) ORTHANC_OVERRIDE;
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176
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177 ServerIndex index_;
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178 IStorageArea& area_;
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179
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180 bool compressionEnabled_;
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181 bool storeMD5_;
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182
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183 DicomCacheProvider provider_;
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184 boost::mutex dicomCacheMutex_;
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185 Deprecated::MemoryCache dicomCache_; // TODO
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186
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187 LuaScripting mainLua_;
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188 LuaScripting filterLua_;
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189 LuaServerListener luaListener_;
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190 std::unique_ptr<SharedArchive> mediaArchive_;
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191
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192 // The "JobsEngine" must be *after* "LuaScripting", as
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193 // "LuaScripting" embeds "LuaJobManager" that registers as an
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194 // observer to "SequenceOfOperationsJob", whose lifetime
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195 // corresponds to that of "JobsEngine". It must also be after
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196 // "mediaArchive_", as jobs might access this archive.
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197 JobsEngine jobsEngine_;
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198
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199 #if ORTHANC_ENABLE_PLUGINS == 1
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200 OrthancPlugins* plugins_;
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201 #endif
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202
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203 ServerListeners listeners_;
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204 boost::recursive_mutex listenersMutex_;
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205
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206 bool done_;
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207 bool haveJobsChanged_;
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208 bool isJobsEngineUnserialized_;
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209 SharedMessageQueue pendingChanges_;
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210 boost::thread changeThread_;
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211 boost::thread saveJobsThread_;
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212
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213 std::unique_ptr<SharedArchive> queryRetrieveArchive_;
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214 std::string defaultLocalAet_;
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215 OrthancHttpHandler httpHandler_;
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216 bool saveJobs_;
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217 FindStorageAccessMode findStorageAccessMode_;
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218 unsigned int limitFindInstances_;
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219 unsigned int limitFindResults_;
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220
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221 std::unique_ptr<MetricsRegistry> metricsRegistry_;
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222 bool isHttpServerSecure_;
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223 bool isExecuteLuaEnabled_;
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224
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225 std::unique_ptr<StorageCommitmentReports> storageCommitmentReports_;
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226
224
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227 public:
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228 class DicomCacheLocker : public boost::noncopyable
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229 {
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230 private:
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231 ServerContext& that_;
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232 ParsedDicomFile *dicom_;
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233 boost::mutex::scoped_lock lock_;
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234
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235 public:
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236 DicomCacheLocker(ServerContext& that,
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237 const std::string& instancePublicId);
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238
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239 ~DicomCacheLocker();
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240
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241 ParsedDicomFile& GetDicom()
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242 {
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243 return *dicom_;
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244 }
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245 };
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246
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247 ServerContext(IDatabaseWrapper& database,
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248 IStorageArea& area,
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249 bool unitTesting,
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250 size_t maxCompletedJobs);
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251
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252 ~ServerContext();
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253
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254 void SetupJobsEngine(bool unitTesting,
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255 bool loadJobsFromDatabase);
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256
224
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257 ServerIndex& GetIndex()
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258 {
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259 return index_;
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260 }
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261
236
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262 void SetCompressionEnabled(bool enabled);
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263
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264 bool IsCompressionEnabled() const
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265 {
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266 return compressionEnabled_;
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267 }
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268
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269 void RemoveFile(const std::string& fileUuid,
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270 FileContentType type);
226
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diff changeset
271
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diff changeset
272 bool AddAttachment(const std::string& resourceId,
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273 FileContentType attachmentType,
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diff changeset
274 const void* data,
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diff changeset
275 size_t size);
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276
1004
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277 StoreStatus Store(std::string& resultPublicId,
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diff changeset
278 DicomInstanceToStore& dicom);
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diff changeset
279
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280 void AnswerAttachment(RestApiOutput& output,
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281 const std::string& resourceId,
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282 FileContentType content);
226
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diff changeset
283
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284 void ChangeAttachmentCompression(const std::string& resourceId,
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285 FileContentType attachmentType,
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286 CompressionType compression);
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287
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288 void ReadDicomAsJson(std::string& result,
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289 const std::string& instancePublicId,
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290 const std::set<DicomTag>& ignoreTagLength);
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291
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292 void ReadDicomAsJson(Json::Value& result,
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293 const std::string& instancePublicId,
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294 const std::set<DicomTag>& ignoreTagLength);
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295
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296 void ReadDicomAsJson(std::string& result,
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297 const std::string& instancePublicId)
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298 {
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299 std::set<DicomTag> ignoreTagLength;
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300 ReadDicomAsJson(result, instancePublicId, ignoreTagLength);
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301 }
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302
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303 void ReadDicomAsJson(Json::Value& result,
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304 const std::string& instancePublicId)
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305 {
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306 std::set<DicomTag> ignoreTagLength;
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307 ReadDicomAsJson(result, instancePublicId, ignoreTagLength);
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308 }
227
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309
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diff changeset
310 void ReadDicom(std::string& dicom,
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diff changeset
311 const std::string& instancePublicId)
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diff changeset
312 {
2128
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313 ReadAttachment(dicom, instancePublicId, FileContentType_Dicom, true);
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314 }
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315
227
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316 // TODO CACHING MECHANISM AT THIS POINT
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317 void ReadAttachment(std::string& result,
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318 const std::string& instancePublicId,
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319 FileContentType content,
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diff changeset
320 bool uncompressIfNeeded);
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diff changeset
321
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diff changeset
322 void ReadAttachment(std::string& result,
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diff changeset
323 const FileInfo& attachment);
1778
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324
695
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325 void SetStoreMD5ForAttachments(bool storeMD5);
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diff changeset
326
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327 bool IsStoreMD5ForAttachments() const
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diff changeset
328 {
1549
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329 return storeMD5_;
695
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330 }
771
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diff changeset
331
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diff changeset
332 JobsEngine& GetJobsEngine()
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diff changeset
333 {
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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334 return jobsEngine_;
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diff changeset
335 }
2e879c796ec7 JobsRegistry::SubmitAndWait(), StoreScuJob
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parents: 2447
diff changeset
336
1145
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diff changeset
337 bool DeleteResource(Json::Value& target,
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diff changeset
338 const std::string& uuid,
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diff changeset
339 ResourceType expectedType);
1189
6b9b02a16e99 NewChildInstance change type
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diff changeset
340
1198
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diff changeset
341 void SignalChange(const ServerIndexChange& change);
1232
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diff changeset
342
1368
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diff changeset
343 SharedArchive& GetQueryRetrieveArchive()
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diff changeset
344 {
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diff changeset
345 return *queryRetrieveArchive_;
1368
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diff changeset
346 }
1427
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diff changeset
347
2965
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diff changeset
348 SharedArchive& GetMediaArchive()
9c0b0a6d8b54 MediaArchiveSize configuration option
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parents: 2950
diff changeset
349 {
9c0b0a6d8b54 MediaArchiveSize configuration option
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diff changeset
350 return *mediaArchive_;
9c0b0a6d8b54 MediaArchiveSize configuration option
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parents: 2950
diff changeset
351 }
9c0b0a6d8b54 MediaArchiveSize configuration option
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parents: 2950
diff changeset
352
1427
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
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diff changeset
353 const std::string& GetDefaultLocalApplicationEntityTitle() const
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
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parents: 1368
diff changeset
354 {
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
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diff changeset
355 return defaultLocalAet_;
d710ea64f0fd Custom setting of the local AET during C-Store SCU (both in Lua and in the REST API)
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diff changeset
356 }
1433
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diff changeset
357
2617
912a767911b0 back to a single Lua context
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diff changeset
358 LuaScripting& GetLuaScripting()
1433
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diff changeset
359 {
2738
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diff changeset
360 return mainLua_;
1433
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parents: 1427
diff changeset
361 }
1434
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parents: 1433
diff changeset
362
1444
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parents: 1436
diff changeset
363 OrthancHttpHandler& GetHttpHandler()
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
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parents: 1436
diff changeset
364 {
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
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parents: 1436
diff changeset
365 return httpHandler_;
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
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parents: 1436
diff changeset
366 }
b2b09a3dbd8e refactoring: OrthancHttpHandler inside OrthancServer
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parents: 1436
diff changeset
367
1447
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1444
diff changeset
368 void Stop();
5ba7471780ae refactoring: HttpToolbox, DumpJson in Lua
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parents: 1444
diff changeset
369
3021
2cbafb5d5a62 renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
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parents: 3015
diff changeset
370 void Apply(ILookupVisitor& visitor,
3033
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
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parents: 3025
diff changeset
371 const DatabaseLookup& lookup,
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
372 ResourceType queryLevel,
2304
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
373 size_t since,
563bf878407a Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
374 size_t limit);
1757
98abb8d7f905 ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1753
diff changeset
375
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
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parents: 3001
diff changeset
376 bool LookupOrReconstructMetadata(std::string& target,
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
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parents: 3001
diff changeset
377 const std::string& publicId,
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
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parents: 3001
diff changeset
378 MetadataType type);
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
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parents: 3001
diff changeset
379
1434
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parents: 1433
diff changeset
380
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diff changeset
381 /**
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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diff changeset
382 * Management of the plugins
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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diff changeset
383 **/
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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diff changeset
384
2136
dd609a99d39a uniformization of the macro naming
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parents: 2128
diff changeset
385 #if ORTHANC_ENABLE_PLUGINS == 1
1434
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parents: 1433
diff changeset
386 void SetPlugins(OrthancPlugins& plugins);
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parents: 1433
diff changeset
387
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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diff changeset
388 void ResetPlugins();
f9cd40166269 refactoring of OrthancPlugins, improvement in ServeFolders
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parents: 1433
diff changeset
389
1632
eb8fbcf008b5 fix build with plugins disabled
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parents: 1549
diff changeset
390 const OrthancPlugins& GetPlugins() const;
1741
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
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parents: 1700
diff changeset
391
06addfcd1d4c OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1700
diff changeset
392 OrthancPlugins& GetPlugins();
1632
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parents: 1549
diff changeset
393 #endif
eb8fbcf008b5 fix build with plugins disabled
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parents: 1549
diff changeset
394
1434
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parents: 1433
diff changeset
395 bool HasPlugins() const;
2626
e09021ddc00d cleanup
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parents: 2617
diff changeset
396
e09021ddc00d cleanup
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parents: 2617
diff changeset
397 void AddChildInstances(SetOfInstancesJob& job,
e09021ddc00d cleanup
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parents: 2617
diff changeset
398 const std::string& publicId);
2940
4767d36679ed refactoring access to Orthanc configuration
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parents: 2876
diff changeset
399
4767d36679ed refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2876
diff changeset
400 void SignalUpdatedModalities();
4767d36679ed refactoring access to Orthanc configuration
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parents: 2876
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401
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parents: 2876
diff changeset
402 void SignalUpdatedPeers();
3174
8ea7c4546c3a primitives to collect metrics in Orthanc
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parents: 3165
diff changeset
403
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
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404 MetricsRegistry& GetMetricsRegistry()
8ea7c4546c3a primitives to collect metrics in Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3165
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405 {
8ea7c4546c3a primitives to collect metrics in Orthanc
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406 return *metricsRegistry_;
8ea7c4546c3a primitives to collect metrics in Orthanc
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parents: 3165
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407 }
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
408
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
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parents: 3533
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409 void SetHttpServerSecure(bool isSecure)
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
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parents: 3174
diff changeset
410 {
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
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parents: 3533
diff changeset
411 isHttpServerSecure_ = isSecure;
3533
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parents: 3174
diff changeset
412 }
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
413
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3533
diff changeset
414 bool IsHttpServerSecure() const
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
415 {
3534
cac8ffcb9cef forcing AuthenticationEnabled to false is considered as insecure if remote access is allowed
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parents: 3533
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416 return isHttpServerSecure_;
3533
2090ec6a83a5 create a default user if none is provided, while issuing a warning in Orthanc Explorer
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parents: 3174
diff changeset
417 }
3535
41365091a41e display a security warning in the logs at startup when ExecuteLuaEnabled is true
Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
418
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diff changeset
419 void SetExecuteLuaEnabled(bool enabled)
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parents: 3534
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420 {
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421 isExecuteLuaEnabled_ = enabled;
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parents: 3534
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422 }
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Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
423
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Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
424 bool IsExecuteLuaEnabled() const
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Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
425 {
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parents: 3534
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426 return isExecuteLuaEnabled_;
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Alain Mazy <alain@mazy.be>
parents: 3534
diff changeset
427 }
3660
f159b731c47d IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
428
f159b731c47d IStorageCommitmentFactory
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parents: 3640
diff changeset
429 virtual IStorageCommitmentFactory::ILookupHandler*
f159b731c47d IStorageCommitmentFactory
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parents: 3640
diff changeset
430 CreateStorageCommitment(const std::string& jobId,
f159b731c47d IStorageCommitmentFactory
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parents: 3640
diff changeset
431 const std::string& transactionUid,
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parents: 3640
diff changeset
432 const std::vector<std::string>& sopClassUids,
3662
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
433 const std::vector<std::string>& sopInstanceUids,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
434 const std::string& remoteAet,
d8371b4302ff OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3660
diff changeset
435 const std::string& calledAet) ORTHANC_OVERRIDE;
3736
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
436
0540b54324f1 StorageCommitmentReports
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parents: 3713
diff changeset
437 StorageCommitmentReports& GetStorageCommitmentReports()
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
438 {
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
439 return *storageCommitmentReports_;
0540b54324f1 StorageCommitmentReports
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3713
diff changeset
440 }
224
4eb0c7ce86c9 refactoring for store
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parents:
diff changeset
441 };
4eb0c7ce86c9 refactoring for store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
442 }