Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.cpp @ 4615:b91ed9e7f43c db-changes
minor api improvements in OrthancCDatabasePlugin.h
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 14 Apr 2021 11:20:05 +0200 |
parents | f75c63aa9de0 |
children | 95ffe3b6ef7c |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
224 | 35 #include "ServerContext.h" |
36 | |
4045 | 37 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h" |
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38 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h" |
4499 | 39 #include "../../OrthancFramework/Sources/DicomFormat/DicomStreamReader.h" |
4045 | 40 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h" |
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41 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h" |
4045 | 42 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" |
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43 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" |
4045 | 44 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h" |
45 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h" | |
46 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h" | |
47 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h" | |
48 #include "../../OrthancFramework/Sources/Logging.h" | |
49 #include "../../OrthancFramework/Sources/MetricsRegistry.h" | |
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50 #include "../Plugins/Engine/OrthancPlugins.h" |
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51 |
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52 #include "OrthancConfiguration.h" |
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53 #include "OrthancRestApi/OrthancRestApi.h" |
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54 #include "Search/DatabaseLookup.h" |
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55 #include "ServerJobs/OrthancJobUnserializer.h" |
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56 #include "ServerToolbox.h" |
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57 #include "StorageCommitmentReports.h" |
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58 |
794 | 59 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 60 |
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61 |
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62 static size_t DICOM_CACHE_SIZE = 128 * 1024 * 1024; // 128 MB |
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63 |
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64 |
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65 /** |
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66 * IMPORTANT: We make the assumption that the same instance of |
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67 * FileStorage can be accessed from multiple threads. This seems OK |
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68 * since the filesystem implements the required locking mechanisms, |
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69 * but maybe a read-writer lock on the "FileStorage" could be |
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70 * useful. Conversely, "ServerIndex" already implements mutex-based |
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71 * locking. |
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72 **/ |
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73 |
224 | 74 namespace Orthanc |
75 { | |
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76 static bool IsUncompressedTransferSyntax(DicomTransferSyntax transferSyntax) |
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77 { |
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78 return (transferSyntax == DicomTransferSyntax_LittleEndianImplicit || |
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79 transferSyntax == DicomTransferSyntax_LittleEndianExplicit || |
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80 transferSyntax == DicomTransferSyntax_BigEndianExplicit); |
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81 } |
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82 |
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83 |
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84 static bool IsTranscodableTransferSyntax(DicomTransferSyntax transferSyntax) |
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85 { |
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86 return ( |
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87 // Do not try to transcode DICOM videos (new in Orthanc 1.8.2) |
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88 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtMainLevel && |
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89 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtHighLevel && |
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90 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_1 && |
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91 transferSyntax != DicomTransferSyntax_MPEG4BDcompatibleHighProfileLevel4_1 && |
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92 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For2DVideo && |
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93 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For3DVideo && |
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94 transferSyntax != DicomTransferSyntax_MPEG4StereoHighProfileLevel4_2 && |
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95 transferSyntax != DicomTransferSyntax_HEVCMainProfileLevel5_1 && |
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96 transferSyntax != DicomTransferSyntax_HEVCMain10ProfileLevel5_1 && |
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97 |
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98 // Do not try to transcode special transfer syntaxes |
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99 transferSyntax != DicomTransferSyntax_RFC2557MimeEncapsulation && |
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100 transferSyntax != DicomTransferSyntax_XML); |
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101 } |
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102 |
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103 |
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104 void ServerContext::ChangeThread(ServerContext* that, |
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105 unsigned int sleepDelay) |
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106 { |
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107 while (!that->done_) |
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108 { |
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109 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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110 |
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111 if (obj.get() != NULL) |
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112 { |
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113 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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114 |
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115 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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116 for (ServerListeners::iterator it = that->listeners_.begin(); |
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117 it != that->listeners_.end(); ++it) |
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118 { |
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119 try |
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120 { |
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121 try |
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122 { |
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123 it->GetListener().SignalChange(change); |
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124 } |
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125 catch (std::bad_alloc&) |
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126 { |
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127 LOG(ERROR) << "Not enough memory while signaling a change"; |
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128 } |
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129 catch (...) |
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130 { |
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131 throw OrthancException(ErrorCode_InternalError); |
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132 } |
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133 } |
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134 catch (OrthancException& e) |
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135 { |
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136 LOG(ERROR) << "Error in the " << it->GetDescription() |
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137 << " callback while signaling a change: " << e.What() |
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138 << " (code " << e.GetErrorCode() << ")"; |
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139 } |
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140 } |
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141 } |
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142 } |
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143 } |
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144 |
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145 |
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146 void ServerContext::SaveJobsThread(ServerContext* that, |
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147 unsigned int sleepDelay) |
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148 { |
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149 static const boost::posix_time::time_duration PERIODICITY = |
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150 boost::posix_time::seconds(10); |
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151 |
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152 boost::posix_time::ptime next = |
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153 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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154 |
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155 while (!that->done_) |
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156 { |
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157 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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158 |
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159 if (that->haveJobsChanged_ || |
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160 boost::posix_time::microsec_clock::universal_time() >= next) |
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161 { |
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162 that->haveJobsChanged_ = false; |
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163 that->SaveJobsEngine(); |
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164 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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165 } |
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166 } |
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167 } |
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168 |
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169 |
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170 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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171 { |
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172 haveJobsChanged_ = true; |
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173 mainLua_.SignalJobSubmitted(jobId); |
4129 | 174 |
175 #if ORTHANC_ENABLE_PLUGINS == 1 | |
176 if (HasPlugins()) | |
177 { | |
178 GetPlugins().SignalJobSubmitted(jobId); | |
179 } | |
180 #endif | |
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181 } |
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182 |
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183 |
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184 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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185 { |
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186 haveJobsChanged_ = true; |
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187 mainLua_.SignalJobSuccess(jobId); |
4129 | 188 |
189 #if ORTHANC_ENABLE_PLUGINS == 1 | |
190 if (HasPlugins()) | |
191 { | |
192 GetPlugins().SignalJobSuccess(jobId); | |
193 } | |
194 #endif | |
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195 } |
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196 |
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197 |
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198 void ServerContext::SignalJobFailure(const std::string& jobId) |
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199 { |
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200 haveJobsChanged_ = true; |
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201 mainLua_.SignalJobFailure(jobId); |
4129 | 202 |
203 #if ORTHANC_ENABLE_PLUGINS == 1 | |
204 if (HasPlugins()) | |
205 { | |
206 GetPlugins().SignalJobFailure(jobId); | |
207 } | |
208 #endif | |
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209 } |
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210 |
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211 |
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212 void ServerContext::SetupJobsEngine(bool unitTesting, |
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213 bool loadJobsFromDatabase) |
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214 { |
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215 if (loadJobsFromDatabase) |
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216 { |
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217 std::string serialized; |
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218 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry, false /* not shared */)) |
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219 { |
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220 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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221 |
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222 try |
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223 { |
4205 | 224 OrthancJobUnserializer unserializer(*this); |
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225 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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226 } |
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227 catch (OrthancException& e) |
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228 { |
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229 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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230 } |
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231 } |
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232 else |
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233 { |
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234 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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235 } |
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236 } |
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237 else |
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238 { |
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239 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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240 } |
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241 |
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242 jobsEngine_.GetRegistry().SetObserver(*this); |
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243 jobsEngine_.Start(); |
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244 isJobsEngineUnserialized_ = true; |
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245 |
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246 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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247 } |
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248 |
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249 |
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250 void ServerContext::SaveJobsEngine() |
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251 { |
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252 if (saveJobs_) |
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253 { |
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254 LOG(TRACE) << "Serializing the content of the jobs engine"; |
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255 |
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256 try |
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257 { |
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258 Json::Value value; |
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259 jobsEngine_.GetRegistry().Serialize(value); |
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260 |
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261 std::string serialized; |
4394
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262 Toolbox::WriteFastJson(serialized, value); |
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263 |
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264 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, false /* not shared */, serialized); |
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265 } |
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266 catch (OrthancException& e) |
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267 { |
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268 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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269 } |
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270 } |
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271 } |
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272 |
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273 |
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274 void ServerContext::PublishDicomCacheMetrics() |
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275 { |
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276 metricsRegistry_->SetValue("orthanc_dicom_cache_size", |
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277 static_cast<float>(dicomCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024)); |
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278 metricsRegistry_->SetValue("orthanc_dicom_cache_count", |
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279 static_cast<float>(dicomCache_.GetNumberOfItems())); |
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280 } |
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281 |
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282 |
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283 ServerContext::ServerContext(IDatabaseWrapper& database, |
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284 IStorageArea& area, |
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285 bool unitTesting, |
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286 size_t maxCompletedJobs) : |
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287 index_(*this, database, (unitTesting ? 20 : 500)), |
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288 area_(area), |
656 | 289 compressionEnabled_(false), |
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290 storeMD5_(true), |
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291 largeDicomThrottler_(1), |
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292 dicomCache_(DICOM_CACHE_SIZE), |
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293 mainLua_(*this), |
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294 filterLua_(*this), |
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295 luaListener_(*this), |
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296 jobsEngine_(maxCompletedJobs), |
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297 #if ORTHANC_ENABLE_PLUGINS == 1 |
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298 plugins_(NULL), |
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299 #endif |
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300 done_(false), |
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301 haveJobsChanged_(false), |
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302 isJobsEngineUnserialized_(false), |
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303 metricsRegistry_(new MetricsRegistry), |
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304 isHttpServerSecure_(true), |
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305 isExecuteLuaEnabled_(false), |
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306 overwriteInstances_(false), |
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307 dcmtkTranscoder_(new DcmtkTranscoder), |
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308 isIngestTranscoding_(false), |
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309 ingestTranscodingOfUncompressed_(true), |
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310 ingestTranscodingOfCompressed_(true), |
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311 preferredTransferSyntax_(DicomTransferSyntax_LittleEndianExplicit), |
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312 deidentifyLogs_(false) |
224 | 313 { |
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314 try |
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315 { |
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316 unsigned int lossyQuality; |
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317 |
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318 { |
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319 OrthancConfiguration::ReaderLock lock; |
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320 |
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321 queryRetrieveArchive_.reset( |
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322 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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323 mediaArchive_.reset( |
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324 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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325 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET(); |
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326 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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327 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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328 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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329 |
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330 // New configuration options in Orthanc 1.5.1 |
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331 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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332 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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333 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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334 |
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335 // New configuration option in Orthanc 1.6.0 |
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336 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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337 |
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338 // New options in Orthanc 1.7.0 |
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339 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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340 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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341 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
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342 |
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343 std::string s; |
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344 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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345 { |
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346 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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347 { |
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348 isIngestTranscoding_ = true; |
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349 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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350 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
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351 |
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352 // New options in Orthanc 1.8.2 |
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353 ingestTranscodingOfUncompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfUncompressed", true); |
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354 ingestTranscodingOfCompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfCompressed", true); |
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355 |
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356 LOG(WARNING) << " Ingest transcoding will " |
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357 << (ingestTranscodingOfUncompressed_ ? "be applied" : "*not* be applied") |
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358 << " to uncompressed transfer syntaxes (Little Endian Implicit/Explicit, Big Endian Explicit)"; |
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359 |
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360 LOG(WARNING) << " Ingest transcoding will " |
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361 << (ingestTranscodingOfCompressed_ ? "be applied" : "*not* be applied") |
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362 << " to compressed transfer syntaxes"; |
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363 } |
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364 else |
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365 { |
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366 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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367 "Unknown transfer syntax for ingest transcoding: " + s); |
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368 } |
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369 } |
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370 else |
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371 { |
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372 isIngestTranscoding_ = false; |
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373 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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374 } |
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375 |
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376 // New options in Orthanc 1.8.2 |
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377 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true)) |
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378 { |
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379 deidentifyLogs_ = true; |
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380 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled"; |
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381 |
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382 DicomVersion version = StringToDicomVersion( |
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383 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2017c")); |
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384 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is " |
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385 << EnumerationToString(version); |
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386 |
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387 logsDeidentifierRules_.SetupAnonymization(version); |
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388 } |
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389 else |
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390 { |
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391 deidentifyLogs_ = false; |
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392 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled"; |
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393 } |
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394 |
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395 // New options in Orthanc 1.9.0 |
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396 if (lock.GetConfiguration().LookupStringParameter(s, "DicomScuPreferredTransferSyntax") && |
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397 !LookupTransferSyntax(preferredTransferSyntax_, s)) |
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398 { |
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399 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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400 "Unknown preferred transfer syntax: " + s); |
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401 } |
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402 |
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403 CLOG(INFO, DICOM) << "Preferred transfer syntax for Orthanc C-STORE SCU: " |
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404 << GetTransferSyntaxUid(preferredTransferSyntax_); |
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405 |
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406 lock.GetConfiguration().GetAcceptedTransferSyntaxes(acceptedTransferSyntaxes_); |
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407 |
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408 isUnknownSopClassAccepted_ = lock.GetConfiguration().GetBooleanParameter("UnknownSopClassAccepted", false); |
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409 } |
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410 |
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411 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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412 |
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413 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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414 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
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415 |
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416 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
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417 } |
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418 catch (OrthancException&) |
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419 { |
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420 Stop(); |
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421 throw; |
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422 } |
224 | 423 } |
424 | |
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425 |
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426 |
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427 ServerContext::~ServerContext() |
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428 { |
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429 if (!done_) |
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430 { |
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431 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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432 Stop(); |
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433 } |
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434 } |
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435 |
1436
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436 |
1447
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437 void ServerContext::Stop() |
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438 { |
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439 if (!done_) |
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440 { |
1459 | 441 { |
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442 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 443 listeners_.clear(); |
444 } | |
445 | |
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446 done_ = true; |
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447 |
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448 if (changeThread_.joinable()) |
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449 { |
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450 changeThread_.join(); |
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451 } |
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452 |
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453 if (saveJobsThread_.joinable()) |
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454 { |
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455 saveJobsThread_.join(); |
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456 } |
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457 |
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458 jobsEngine_.GetRegistry().ResetObserver(); |
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459 |
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460 if (isJobsEngineUnserialized_) |
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461 { |
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462 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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463 SaveJobsEngine(); |
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464 } |
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465 |
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466 // Do not change the order below! |
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467 jobsEngine_.Stop(); |
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468 index_.Stop(); |
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469 } |
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470 } |
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471 |
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472 |
236 | 473 void ServerContext::SetCompressionEnabled(bool enabled) |
474 { | |
475 if (enabled) | |
476 LOG(WARNING) << "Disk compression is enabled"; | |
477 else | |
478 LOG(WARNING) << "Disk compression is disabled"; | |
479 | |
480 compressionEnabled_ = enabled; | |
481 } | |
482 | |
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483 |
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484 void ServerContext::RemoveFile(const std::string& fileUuid, |
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485 FileContentType type) |
227
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486 { |
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487 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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488 accessor.Remove(fileUuid, type); |
227
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489 } |
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490 |
996
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491 |
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492 StoreStatus ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
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493 DicomInstanceToStore& dicom, |
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494 StoreInstanceMode mode) |
1004
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DicomInstanceToStore
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495 { |
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496 bool overwrite; |
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497 switch (mode) |
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498 { |
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499 case StoreInstanceMode_Default: |
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500 overwrite = overwriteInstances_; |
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501 break; |
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502 |
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503 case StoreInstanceMode_OverwriteDuplicate: |
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504 overwrite = true; |
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505 break; |
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506 |
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507 case StoreInstanceMode_IgnoreDuplicate: |
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508 overwrite = false; |
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509 break; |
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510 |
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511 default: |
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512 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4499 | 513 } |
514 | |
515 bool hasPixelDataOffset; | |
516 uint64_t pixelDataOffset; | |
517 hasPixelDataOffset = DicomStreamReader::LookupPixelDataOffset( | |
518 pixelDataOffset, dicom.GetBufferData(), dicom.GetBufferSize()); | |
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519 |
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520 DicomTransferSyntax transferSyntax; |
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521 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
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522 |
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523 DicomMap summary; |
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524 dicom.GetSummary(summary); |
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525 |
1004
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526 try |
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527 { |
3175
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528 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
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529 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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530 |
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531 DicomInstanceHasher hasher(summary); |
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532 resultPublicId = hasher.HashInstance(); |
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533 |
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534 Json::Value dicomAsJson; |
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535 dicom.GetDicomAsJson(dicomAsJson); |
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536 |
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537 Json::Value simplifiedTags; |
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538 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicomAsJson, DicomToJsonFormat_Human); |
1004
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539 |
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540 // Test if the instance must be filtered out |
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541 bool accepted = true; |
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542 |
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543 { |
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544 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
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545 |
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546 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1433
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547 { |
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548 try |
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549 { |
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550 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
1453
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551 { |
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552 accepted = false; |
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553 break; |
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554 } |
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555 } |
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556 catch (OrthancException& e) |
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557 { |
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558 LOG(ERROR) << "Error in the " << it->GetDescription() |
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559 << " callback while receiving an instance: " << e.What() |
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560 << " (code " << e.GetErrorCode() << ")"; |
1453
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561 throw; |
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562 } |
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563 } |
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564 } |
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565 |
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566 if (!accepted) |
1004
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567 { |
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568 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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569 return StoreStatus_FilteredOut; |
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570 } |
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571 |
4457
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
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|
572 // Remove the file from the DicomCache (useful if |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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573 // "OverwriteInstances" is set to "true") |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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574 dicomCache_.Invalidate(resultPublicId); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
575 PublishDicomCacheMetrics(); |
2825
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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diff
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|
576 |
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577 // TODO Should we use "gzip" instead? |
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578 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
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579 |
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580 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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|
581 FileContentType_Dicom, compression, storeMD5_); |
1004
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|
582 |
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583 ServerIndex::Attachments attachments; |
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|
584 attachments.push_back(dicomInfo); |
4500
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added safeguards in Orthanc::FileInfo
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|
585 |
4514
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586 FileInfo dicomUntilPixelData; |
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587 if (hasPixelDataOffset && |
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|
588 (!area_.HasReadRange() || |
4519 | 589 compressionEnabled_)) |
4500
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590 { |
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591 dicomUntilPixelData = accessor.Write(dicom.GetBufferData(), pixelDataOffset, |
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592 FileContentType_DicomUntilPixelData, compression, storeMD5_); |
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593 attachments.push_back(dicomUntilPixelData); |
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|
594 } |
1004
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595 |
1067
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access metadata in plugins
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|
596 typedef std::map<MetadataType, std::string> InstanceMetadata; |
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597 InstanceMetadata instanceMetadata; |
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598 StoreStatus status = index_.Store( |
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599 instanceMetadata, summary, attachments, dicom.GetMetadata(), dicom.GetOrigin(), overwrite, |
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|
600 hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset); |
1004
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|
601 |
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602 // Only keep the metadata for the "instance" level |
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|
603 dicom.ClearMetadata(); |
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|
604 |
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605 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 606 it != instanceMetadata.end(); ++it) |
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607 { |
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|
608 dicom.AddMetadata(ResourceType_Instance, it->first, it->second); |
1067
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|
609 } |
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|
610 |
1004
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|
611 if (status != StoreStatus_Success) |
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|
612 { |
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changeset
|
613 accessor.Remove(dicomInfo); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
614 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
615 if (dicomUntilPixelData.IsValid()) |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
616 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
617 accessor.Remove(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
618 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
619 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
620 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
621 switch (status) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
622 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
623 case StoreStatus_Success: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
624 LOG(INFO) << "New instance stored"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
625 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
626 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
627 case StoreStatus_AlreadyStored: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
628 LOG(INFO) << "Already stored"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
629 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
630 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
631 case StoreStatus_Failure: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
632 LOG(ERROR) << "Store failure"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
633 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
634 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
635 default: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
636 // This should never happen |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
637 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
638 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
639 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
640 if (status == StoreStatus_Success || |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
641 status == StoreStatus_AlreadyStored) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
642 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
643 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
644 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
645 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
646 { |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
647 try |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
648 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
649 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
650 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
651 catch (OrthancException& e) |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
652 { |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
653 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
654 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
655 << " (code " << e.GetErrorCode() << ")"; |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
656 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
657 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
658 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
659 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
660 return status; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
661 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
662 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
663 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
664 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
665 { |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
666 summary.LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
667 } |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
668 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
669 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
670 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
671 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
672 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
673 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
674 StoreStatus ServerContext::Store(std::string& resultPublicId, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
675 DicomInstanceToStore& dicom, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
676 StoreInstanceMode mode) |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
677 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
678 if (!isIngestTranscoding_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
679 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
680 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
681 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
682 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
683 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
684 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
685 // Automated transcoding of incoming DICOM instance |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
686 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
687 bool transcode = false; |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
688 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
689 DicomTransferSyntax sourceSyntax; |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
690 if (!dicom.LookupTransferSyntax(sourceSyntax) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
691 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
692 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
693 // Don't transcode if the incoming DICOM is already in the proper transfer syntax |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
694 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
695 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
696 else if (!IsTranscodableTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
697 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
698 // Don't try to transcode video files, this is useless (new in |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
699 // Orthanc 1.8.2). This could be accepted in the future if |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
700 // video transcoding gets implemented. |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
701 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
702 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
703 else if (IsUncompressedTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
704 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
705 // This is an uncompressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
706 transcode = ingestTranscodingOfUncompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
707 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
708 else |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
709 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
710 // This is an compressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
711 transcode = ingestTranscodingOfCompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
712 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
713 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
714 if (!transcode) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
715 { |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
716 // No transcoding |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
717 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
718 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
719 else |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
720 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
721 // Trancoding |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
722 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
723 syntaxes.insert(ingestTransferSyntax_); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
724 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
725 IDicomTranscoder::DicomImage source; |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
726 source.SetExternalBuffer(dicom.GetBufferData(), dicom.GetBufferSize()); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
727 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
728 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
729 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
730 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
731 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
732 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
733 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*tmp)); |
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
734 toStore->SetOrigin(dicom.GetOrigin()); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
735 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
736 StoreStatus ok = StoreAfterTranscoding(resultPublicId, *toStore, mode); |
3938 | 737 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
738 | |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
739 return ok; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
740 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
741 else |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
742 { |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
743 // Cannot transcode => store the original file |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
744 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
745 } |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
746 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
747 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
748 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
749 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
750 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
751 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
752 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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753 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
754 { |
232
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refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
755 FileInfo attachment; |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
756 if (!index_.LookupAttachment(attachment, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
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|
757 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
758 throw OrthancException(ErrorCode_UnknownResource); |
236 | 759 } |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
760 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
761 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1772
53e045b5a8ec
MIME content type can be associated to custom attachments (cf. "UserContentType")
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1758
diff
changeset
|
762 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
226
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refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
763 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
764 |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
765 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
766 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
767 FileContentType attachmentType, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
768 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
769 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
770 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
771 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
772 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
773 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
774 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
775 FileInfo attachment; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
776 if (!index_.LookupAttachment(attachment, resourceId, attachmentType)) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
777 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
778 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
779 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
780 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
781 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
782 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
783 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
784 return; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
785 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
786 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
787 std::string content; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
788 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
789 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
790 accessor.Read(content, attachment); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
791 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
792 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
793 content.size(), attachmentType, compression, storeMD5_); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
794 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
795 try |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
796 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
797 StoreStatus status = index_.AddAttachment(modified, resourceId); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
798 if (status != StoreStatus_Success) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
799 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
800 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
801 throw OrthancException(ErrorCode_Database); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
802 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
803 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
804 catch (OrthancException&) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
805 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
806 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
807 throw; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
808 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
809 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
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diff
changeset
|
810 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
811 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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4513
diff
changeset
|
812 static void InjectEmptyPixelData(Json::Value& dicomAsJson) |
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
4513
diff
changeset
|
813 { |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
814 // This is for backward compatibility with Orthanc <= 1.9.0 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
815 Json::Value pixelData = Json::objectValue; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
816 pixelData["Name"] = "PixelData"; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
817 pixelData["Type"] = "Null"; |
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removal of "dicom-as-json" attachments
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parents:
4513
diff
changeset
|
818 pixelData["Value"] = Json::nullValue; |
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removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
819 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
820 dicomAsJson["7fe0,0010"] = pixelData; |
5b929e6b3c36
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diff
changeset
|
821 } |
5b929e6b3c36
removal of "dicom-as-json" attachments
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diff
changeset
|
822 |
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removal of "dicom-as-json" attachments
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diff
changeset
|
823 |
2124 | 824 void ServerContext::ReadDicomAsJson(Json::Value& result, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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parents:
2382
diff
changeset
|
825 const std::string& instancePublicId, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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2382
diff
changeset
|
826 const std::set<DicomTag>& ignoreTagLength) |
226
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224
diff
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|
827 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
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diff
changeset
|
828 /** |
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removal of "dicom-as-json" attachments
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diff
changeset
|
829 * CASE 1: The DICOM file, truncated at pixel data, is available |
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830 * as an attachment (it was created either because the storage |
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831 * area does not support range reads, or it "StorageCompression" |
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832 * is enabled). Simply return this attachment. |
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833 **/ |
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834 |
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835 FileInfo attachment; |
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836 |
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837 if (index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomUntilPixelData)) |
2409
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838 { |
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839 std::string dicom; |
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840 |
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841 { |
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842 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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843 accessor.Read(dicom, attachment); |
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844 } |
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845 |
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846 ParsedDicomFile parsed(dicom); |
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847 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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848 InjectEmptyPixelData(result); |
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849 } |
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850 else |
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851 { |
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852 /** |
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853 * The truncated DICOM file is not stored as a standalone |
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854 * attachment. Lookup whether the pixel data offset has already |
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855 * been computed for this instance. |
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856 **/ |
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857 |
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858 bool hasPixelDataOffset; |
4519 | 859 uint64_t pixelDataOffset = 0; // dummy initialization |
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860 |
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861 { |
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862 std::string s; |
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863 if (index_.LookupMetadata(s, instancePublicId, ResourceType_Instance, |
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864 MetadataType_Instance_PixelDataOffset)) |
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865 { |
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866 hasPixelDataOffset = false; |
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867 |
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868 if (!s.empty()) |
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869 { |
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870 try |
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871 { |
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872 pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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873 hasPixelDataOffset = true; |
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874 } |
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875 catch (boost::bad_lexical_cast&) |
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876 { |
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877 } |
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878 } |
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879 |
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880 if (!hasPixelDataOffset) |
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881 { |
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882 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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883 } |
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884 } |
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885 else |
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|
886 { |
4514
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887 // This instance was created by a version of Orthanc <= 1.9.0 |
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888 hasPixelDataOffset = false; |
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889 } |
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890 } |
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891 |
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892 |
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893 if (hasPixelDataOffset && |
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894 area_.HasReadRange() && |
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895 index_.LookupAttachment(attachment, instancePublicId, FileContentType_Dicom) && |
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896 attachment.GetCompressionType() == CompressionType_None) |
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897 { |
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898 /** |
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899 * CASE 2: The pixel data offset is known, AND that a range read |
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900 * can be used to retrieve the truncated DICOM file. Note that |
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901 * this case cannot be used if "StorageCompression" option is |
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902 * "true". |
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903 **/ |
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904 |
4519 | 905 std::unique_ptr<IMemoryBuffer> dicom; |
906 { | |
907 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_storage_read_range_duration_ms"); | |
908 dicom.reset(area_.ReadRange(attachment.GetUuid(), FileContentType_Dicom, 0, pixelDataOffset)); | |
909 } | |
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910 |
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911 if (dicom.get() == NULL) |
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912 { |
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913 throw OrthancException(ErrorCode_InternalError); |
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914 } |
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915 else |
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916 { |
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917 assert(dicom->GetSize() == pixelDataOffset); |
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918 ParsedDicomFile parsed(dicom->GetData(), dicom->GetSize()); |
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919 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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920 InjectEmptyPixelData(result); |
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921 } |
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922 } |
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923 else if (ignoreTagLength.empty() && |
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924 index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomAsJson)) |
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925 { |
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926 /** |
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927 * CASE 3: This instance was created using Orthanc <= |
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928 * 1.9.0. Reuse the old "DICOM-as-JSON" attachment if available. |
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929 * This is for backward compatibility: A call to |
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930 * "/tools/invalidate-tags" or to one flavors of |
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931 * "/.../.../reconstruct" will disable this case. |
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932 **/ |
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933 |
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934 std::string dicomAsJson; |
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935 |
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936 { |
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937 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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|
938 accessor.Read(dicomAsJson, attachment); |
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|
939 } |
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940 |
4514
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941 if (!Toolbox::ReadJson(result, dicomAsJson)) |
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|
942 { |
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943 throw OrthancException(ErrorCode_CorruptedFile, |
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944 "Corrupted DICOM-as-JSON attachment of instance: " + instancePublicId); |
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|
945 } |
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|
946 } |
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947 else |
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948 { |
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949 /** |
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950 * CASE 4: Neither the truncated DICOM file is accessible, nor |
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951 * the DICOM-as-JSON summary. We have to retrieve the full DICOM |
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952 * file from the storage area. |
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953 **/ |
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954 |
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955 std::string dicom; |
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956 ReadDicom(dicom, instancePublicId); |
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957 |
4514
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958 ParsedDicomFile parsed(dicom); |
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959 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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960 |
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961 if (!hasPixelDataOffset) |
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962 { |
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963 /** |
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964 * The pixel data offset was never computed for this |
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965 * instance, which indicates that it was created using |
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966 * Orthanc <= 1.9.0, or that calls to |
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967 * "LookupPixelDataOffset()" from earlier versions of |
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968 * Orthanc have failed. Try again this precomputation now |
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969 * for future calls. |
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970 **/ |
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971 if (DicomStreamReader::LookupPixelDataOffset(pixelDataOffset, dicom) && |
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972 pixelDataOffset < dicom.size()) |
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973 { |
4514
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974 index_.SetMetadata(instancePublicId, MetadataType_Instance_PixelDataOffset, |
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975 boost::lexical_cast<std::string>(pixelDataOffset)); |
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|
976 |
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977 if (!area_.HasReadRange() || |
4519 | 978 compressionEnabled_) |
4514
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979 { |
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980 AddAttachment(instancePublicId, FileContentType_DicomUntilPixelData, |
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981 dicom.empty() ? NULL: dicom.c_str(), pixelDataOffset); |
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982 } |
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983 } |
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984 } |
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985 } |
226
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986 } |
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987 } |
227
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988 |
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989 |
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990 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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991 const std::string& instancePublicId) |
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992 { |
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993 std::set<DicomTag> ignoreTagLength; |
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994 ReadDicomAsJson(result, instancePublicId, ignoreTagLength); |
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995 } |
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996 |
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997 |
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998 void ServerContext::ReadDicom(std::string& dicom, |
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999 const std::string& instancePublicId) |
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1000 { |
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1001 ReadAttachment(dicom, instancePublicId, FileContentType_Dicom, true /* uncompress */); |
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1002 } |
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1003 |
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1004 |
4511
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1005 bool ServerContext::ReadDicomUntilPixelData(std::string& dicom, |
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1006 const std::string& instancePublicId) |
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1007 { |
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1008 if (!area_.HasReadRange()) |
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1009 { |
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1010 return false; |
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1011 } |
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1012 |
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1013 FileInfo attachment; |
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1014 if (!index_.LookupAttachment(attachment, instancePublicId, FileContentType_Dicom)) |
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1015 { |
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1016 throw OrthancException(ErrorCode_InternalError, |
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1017 "Unable to read the DICOM file of instance " + instancePublicId); |
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1018 } |
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1019 |
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1020 std::string s; |
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1021 |
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1022 if (attachment.GetCompressionType() == CompressionType_None && |
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1023 index_.LookupMetadata(s, instancePublicId, ResourceType_Instance, |
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1024 MetadataType_Instance_PixelDataOffset) && |
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1025 !s.empty()) |
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1026 { |
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1027 try |
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1028 { |
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1029 uint64_t pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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1030 |
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1031 std::unique_ptr<IMemoryBuffer> buffer( |
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1032 area_.ReadRange(attachment.GetUuid(), attachment.GetContentType(), 0, pixelDataOffset)); |
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1033 buffer->MoveToString(dicom); |
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1034 return true; // Success |
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1035 } |
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1036 catch (boost::bad_lexical_cast&) |
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1037 { |
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1038 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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1039 } |
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1040 } |
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1041 |
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1042 return false; |
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1043 } |
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1044 |
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1045 |
2128
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1046 void ServerContext::ReadAttachment(std::string& result, |
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1047 const std::string& instancePublicId, |
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1048 FileContentType content, |
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1049 bool uncompressIfNeeded) |
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1050 { |
232
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1051 FileInfo attachment; |
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1052 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
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1053 { |
2956 | 1054 throw OrthancException(ErrorCode_InternalError, |
1055 "Unable to read attachment " + EnumerationToString(content) + | |
1056 " of instance " + instancePublicId); | |
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1057 } |
1550 | 1058 |
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1059 assert(attachment.GetContentType() == content); |
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1060 |
1550 | 1061 { |
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1062 StorageAccessor accessor(area_, GetMetricsRegistry()); |
4509
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1063 |
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1064 if (uncompressIfNeeded) |
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1065 { |
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1066 accessor.Read(result, attachment); |
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1067 } |
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1068 else |
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1069 { |
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1070 // Do not uncompress the content of the storage area, return the |
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1071 // raw data |
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1072 accessor.ReadRaw(result, attachment); |
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1073 } |
1550 | 1074 } |
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1075 } |
285
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1076 |
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1077 |
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1078 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& context, |
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1079 const std::string& instancePublicId) : |
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1080 context_(context), |
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1081 instancePublicId_(instancePublicId) |
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1082 { |
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1083 accessor_.reset(new ParsedDicomCache::Accessor(context_.dicomCache_, instancePublicId)); |
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1084 |
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1085 if (!accessor_->IsValid()) |
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1086 { |
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1087 accessor_.reset(NULL); |
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1088 |
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1089 // Throttle to avoid loading several large DICOM files simultaneously |
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1090 largeDicomLocker_.reset(new Semaphore::Locker(context.largeDicomThrottler_)); |
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1091 |
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1092 std::string content; |
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1093 context_.ReadDicom(content, instancePublicId); |
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1094 |
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1095 // Release the throttle if loading "small" DICOM files (under |
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1096 // 50MB, which is an arbitrary value) |
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1097 if (content.size() < 50 * 1024 * 1024) |
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1098 { |
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1099 largeDicomLocker_.reset(NULL); |
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1100 } |
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1101 |
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1102 dicom_.reset(new ParsedDicomFile(content)); |
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1103 dicomSize_ = content.size(); |
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1104 } |
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1105 |
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1106 assert(accessor_.get() != NULL || |
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1107 dicom_.get() != NULL); |
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1108 } |
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1109 |
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1110 |
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1111 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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1112 { |
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1113 if (dicom_.get() != NULL) |
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1114 { |
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1115 try |
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1116 { |
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1117 context_.dicomCache_.Acquire(instancePublicId_, dicom_.release(), dicomSize_); |
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1118 context_.PublishDicomCacheMetrics(); |
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1119 } |
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1120 catch (OrthancException&) |
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1121 { |
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1122 } |
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1123 } |
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1124 } |
304 | 1125 |
1126 | |
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1127 ParsedDicomFile& ServerContext::DicomCacheLocker::GetDicom() const |
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1128 { |
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1129 if (dicom_.get() != NULL) |
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1130 { |
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1131 return *dicom_; |
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1132 } |
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1133 else |
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1134 { |
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1135 assert(accessor_.get() != NULL); |
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1136 return accessor_->GetDicom(); |
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1137 } |
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1138 } |
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1139 |
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1140 |
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1141 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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1142 { |
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1143 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
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1144 storeMD5_ = storeMD5; |
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1145 } |
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1146 |
699
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1147 |
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1148 bool ServerContext::AddAttachment(const std::string& resourceId, |
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1149 FileContentType attachmentType, |
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1150 const void* data, |
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1151 size_t size) |
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1152 { |
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1153 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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1154 |
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1155 // TODO Should we use "gzip" instead? |
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1156 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
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1157 |
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1158 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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1159 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
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1160 |
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1161 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1162 if (status != StoreStatus_Success) |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1163 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1164 accessor.Remove(attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1165 return false; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1166 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1167 else |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1168 { |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1169 return true; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1170 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1171 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1172 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1173 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1174 bool ServerContext::DeleteResource(Json::Value& target, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1175 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1176 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1177 { |
2507 | 1178 if (expectedType == ResourceType_Instance) |
1179 { | |
1180 // remove the file from the DicomCache | |
1181 dicomCache_.Invalidate(uuid); | |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1182 PublishDicomCacheMetrics(); |
2507 | 1183 } |
1184 | |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1185 return index_.DeleteResource(target, uuid, expectedType); |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1186 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1187 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1188 |
1198 | 1189 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1190 { |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1191 if (change.GetResourceType() == ResourceType_Instance && |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1192 change.GetChangeType() == ChangeType_Deleted) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1193 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1194 dicomCache_.Invalidate(change.GetPublicId()); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1195 PublishDicomCacheMetrics(); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1196 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1197 |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
1198 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1199 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1200 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1201 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1202 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1203 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1204 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1205 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1206 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1207 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1208 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1209 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1210 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1211 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1212 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1213 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1214 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1215 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1216 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1217 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1218 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1219 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1220 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1221 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1222 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1223 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1224 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1225 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1226 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1227 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1228 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1229 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1230 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1231 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1232 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1233 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1234 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1235 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1236 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1237 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1238 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1239 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1240 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1241 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1242 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1243 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1244 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1245 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1246 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1247 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1248 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1249 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1250 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1251 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1252 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1253 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1254 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1255 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1256 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1257 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1258 return (plugins_ != NULL); |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1259 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1260 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1261 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1262 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1263 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1264 |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1265 void ServerContext::ApplyInternal(ILookupVisitor& visitor, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1266 const DatabaseLookup& lookup, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1267 ResourceType queryLevel, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1268 size_t since, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1269 size_t limit) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1270 { |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1271 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
1272 limitFindInstances_ : limitFindResults_); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1273 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1274 std::vector<std::string> resources, instances; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1275 |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1276 { |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
1277 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
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1278 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit); |
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1279 } |
3025
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preparing to speed up find in databases
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1280 |
3033
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diff
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|
1281 bool complete = (databaseLimit == 0 || |
3204
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1282 resources.size() <= databaseLimit); |
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1283 |
3005
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DicomMap::FromDicomAsJson
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diff
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1284 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
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1285 |
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1286 /** |
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1287 * "resources" contains the Orthanc ID of the resource at level |
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1288 * "queryLevel", "instances" contains one the Orthanc ID of one |
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1289 * sample instance from this resource. |
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1290 **/ |
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1291 assert(resources.size() == instances.size()); |
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1292 |
3001
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diff
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|
1293 size_t countResults = 0; |
2304
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Sebastien Jodogne <s.jodogne@gmail.com>
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1294 size_t skipped = 0; |
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1295 |
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1296 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
3012
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1297 |
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1298 for (size_t i = 0; i < instances.size(); i++) |
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1299 { |
3012
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|
1300 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
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1301 // the disk if only "main DICOM tags" are to be returned |
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1302 |
3712
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1303 std::unique_ptr<Json::Value> dicomAsJson; |
3012
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1304 |
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|
1305 bool hasOnlyMainDicomTags; |
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1306 DicomMap dicom; |
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1307 |
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|
1308 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly || |
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|
1309 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer || |
3015
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|
1310 lookup.HasOnlyMainDicomTags()) |
3012
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1311 { |
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1312 // Case (1): The main DICOM tags, as stored in the database, |
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1313 // are sufficient to look for match |
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1314 |
3679
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|
1315 DicomMap tmp; |
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|
1316 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i])) |
3015
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1317 { |
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1318 // The instance has been removed during the execution of the |
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1319 // lookup, ignore it |
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1320 continue; |
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1321 } |
3679
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1322 |
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1323 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
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1324 // level of interest for the query |
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1325 switch (queryLevel) |
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1326 { |
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1327 // WARNING: Don't reorder cases below, and don't add "break" |
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1328 case ResourceType_Instance: |
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|
1329 dicom.MergeMainDicomTags(tmp, ResourceType_Instance); |
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1330 |
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1331 case ResourceType_Series: |
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1332 dicom.MergeMainDicomTags(tmp, ResourceType_Series); |
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1333 |
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1334 case ResourceType_Study: |
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1335 dicom.MergeMainDicomTags(tmp, ResourceType_Study); |
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1336 |
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1337 case ResourceType_Patient: |
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|
1338 dicom.MergeMainDicomTags(tmp, ResourceType_Patient); |
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1339 break; |
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1340 |
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1341 default: |
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1342 throw OrthancException(ErrorCode_InternalError); |
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1343 } |
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1344 |
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1345 hasOnlyMainDicomTags = true; |
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1346 } |
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1347 else |
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1348 { |
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1349 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
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1350 // the storage area |
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|
1351 dicomAsJson.reset(new Json::Value); |
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|
1352 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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1353 |
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|
1354 dicom.FromDicomAsJson(*dicomAsJson); |
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1355 |
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diff
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|
1356 // This map contains the entire JSON, i.e. more than the main DICOM tags |
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1357 hasOnlyMainDicomTags = false; |
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1358 } |
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1359 |
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1360 if (lookup.IsMatch(dicom)) |
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|
1361 { |
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1362 if (skipped < since) |
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1363 { |
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1364 skipped++; |
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1365 } |
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1366 else if (limit != 0 && |
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1367 countResults >= limit) |
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1368 { |
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1369 // Too many results, don't mark as complete |
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1370 complete = false; |
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1371 break; |
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1372 } |
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1373 else |
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1374 { |
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1375 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer || |
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|
1376 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) && |
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1377 dicomAsJson.get() == NULL && |
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1378 isDicomAsJsonNeeded) |
3012
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1379 { |
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diff
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|
1380 dicomAsJson.reset(new Json::Value); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1381 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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|
1382 } |
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|
1383 |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1384 if (hasOnlyMainDicomTags) |
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|
1385 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1386 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
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|
1387 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
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|
1388 } |
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|
1389 else |
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|
1390 { |
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|
1391 // Remove the non-main DICOM tags from "dicom" if Case (2) |
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|
1392 // was used, for consistency with Case (1) |
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|
1393 |
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|
1394 DicomMap mainDicomTags; |
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|
1395 mainDicomTags.ExtractMainDicomTags(dicom); |
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|
1396 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
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1397 } |
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|
1398 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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|
1399 countResults ++; |
1757
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1400 } |
98abb8d7f905
ServerContext::Apply lookup
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1401 } |
98abb8d7f905
ServerContext::Apply lookup
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1402 } |
3001
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|
1403 |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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|
1404 if (complete) |
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|
1405 { |
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|
1406 visitor.MarkAsComplete(); |
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1407 } |
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|
1408 |
5ae3ff2398e9
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|
1409 LOG(INFO) << "Number of matching resources: " << countResults; |
1757
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1410 } |
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1411 |
2626 | 1412 |
4196
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1413 |
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1414 namespace |
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1415 { |
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1416 class ModalitiesInStudyVisitor : public ServerContext::ILookupVisitor |
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1417 { |
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1418 private: |
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1419 class Study : public boost::noncopyable |
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1420 { |
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1421 private: |
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1422 std::string orthancId_; |
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1423 std::string instanceId_; |
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1424 DicomMap mainDicomTags_; |
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|
1425 Json::Value dicomAsJson_; |
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1426 std::set<std::string> modalitiesInStudy_; |
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1427 |
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1428 public: |
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|
1429 Study(const std::string& instanceId, |
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1430 const DicomMap& seriesTags) : |
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1431 instanceId_(instanceId), |
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|
1432 dicomAsJson_(Json::nullValue) |
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1433 { |
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1434 { |
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|
1435 DicomMap tmp; |
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|
1436 tmp.Assign(seriesTags); |
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|
1437 tmp.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "dummy", false); |
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|
1438 DicomInstanceHasher hasher(tmp); |
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|
1439 orthancId_ = hasher.HashStudy(); |
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1440 } |
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|
1441 |
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|
1442 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Study); |
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|
1443 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Patient); |
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|
1444 AddModality(seriesTags); |
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1445 } |
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1446 |
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|
1447 void AddModality(const DicomMap& seriesTags) |
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1448 { |
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|
1449 std::string modality; |
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1450 if (seriesTags.LookupStringValue(modality, DICOM_TAG_MODALITY, false) && |
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1451 !modality.empty()) |
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1452 { |
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|
1453 modalitiesInStudy_.insert(modality); |
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1454 } |
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1455 } |
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|
1456 |
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|
1457 void SetDicomAsJson(const Json::Value& dicomAsJson) |
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1458 { |
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|
1459 dicomAsJson_ = dicomAsJson; |
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1460 } |
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|
1461 |
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|
1462 const std::string& GetOrthancId() const |
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1463 { |
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1464 return orthancId_; |
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1465 } |
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1466 |
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|
1467 const std::string& GetInstanceId() const |
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1468 { |
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|
1469 return instanceId_; |
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1470 } |
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|
1471 |
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|
1472 const DicomMap& GetMainDicomTags() const |
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1473 { |
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|
1474 return mainDicomTags_; |
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|
1475 } |
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1476 |
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1477 const Json::Value* GetDicomAsJson() const |
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1478 { |
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1479 if (dicomAsJson_.type() == Json::nullValue) |
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1480 { |
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1481 return NULL; |
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1482 } |
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1483 else |
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1484 { |
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1485 return &dicomAsJson_; |
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1486 } |
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1487 } |
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1488 }; |
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1489 |
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1490 typedef std::map<std::string, Study*> Studies; |
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1491 |
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1492 bool isDicomAsJsonNeeded_; |
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1493 bool complete_; |
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1494 Studies studies_; |
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1495 |
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1496 public: |
4205 | 1497 explicit ModalitiesInStudyVisitor(bool isDicomAsJsonNeeded) : |
1498 isDicomAsJsonNeeded_(isDicomAsJsonNeeded), | |
1499 complete_(false) | |
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1500 { |
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1501 } |
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1502 |
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1503 ~ModalitiesInStudyVisitor() |
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1504 { |
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1505 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it) |
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1506 { |
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1507 assert(it->second != NULL); |
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1508 delete it->second; |
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1509 } |
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1510 |
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1511 studies_.clear(); |
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1512 } |
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1513 |
4205 | 1514 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
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1515 { |
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1516 return isDicomAsJsonNeeded_; |
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1517 } |
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1518 |
4205 | 1519 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1520 { |
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1521 complete_ = true; |
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1522 } |
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1523 |
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1524 virtual void Visit(const std::string& publicId, |
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1525 const std::string& instanceId, |
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1526 const DicomMap& seriesTags, |
4205 | 1527 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE |
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1528 { |
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1529 std::string studyInstanceUid; |
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1530 if (seriesTags.LookupStringValue(studyInstanceUid, DICOM_TAG_STUDY_INSTANCE_UID, false)) |
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1531 { |
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1532 Studies::iterator found = studies_.find(studyInstanceUid); |
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1533 if (found == studies_.end()) |
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1534 { |
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|
1535 // New study |
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|
1536 std::unique_ptr<Study> study(new Study(instanceId, seriesTags)); |
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1537 |
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|
1538 if (dicomAsJson != NULL) |
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|
1539 { |
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|
1540 study->SetDicomAsJson(*dicomAsJson); |
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|
1541 } |
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|
1542 |
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|
1543 studies_[studyInstanceUid] = study.release(); |
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1544 } |
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1545 else |
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1546 { |
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|
1547 // Already existing study |
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|
1548 found->second->AddModality(seriesTags); |
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1549 } |
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1550 } |
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1551 } |
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1552 |
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|
1553 void Forward(ILookupVisitor& callerVisitor, |
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1554 size_t since, |
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1555 size_t limit) const |
4205 | 1556 { |
4196
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1557 size_t index = 0; |
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1558 size_t countForwarded = 0; |
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1559 |
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1560 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it, index++) |
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1561 { |
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1562 if (limit == 0 || |
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1563 (index >= since && |
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1564 index < limit)) |
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1565 { |
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|
1566 assert(it->second != NULL); |
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1567 const Study& study = *it->second; |
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1568 |
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1569 countForwarded++; |
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1570 callerVisitor.Visit(study.GetOrthancId(), study.GetInstanceId(), |
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1571 study.GetMainDicomTags(), study.GetDicomAsJson()); |
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1572 } |
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1573 } |
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1574 |
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1575 if (countForwarded == studies_.size()) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1576 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1577 callerVisitor.MarkAsComplete(); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1578 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1579 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1580 }; |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1581 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1582 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1583 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1584 void ServerContext::Apply(ILookupVisitor& visitor, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1585 const DatabaseLookup& lookup, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1586 ResourceType queryLevel, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1587 size_t since, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1588 size_t limit) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1589 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1590 if (queryLevel == ResourceType_Study && |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1591 lookup.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1592 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1593 // Convert the study-level query, into a series-level query, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1594 // where "ModalitiesInStudy" is replaced by "Modality" |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1595 DatabaseLookup seriesLookup; |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1596 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1597 for (size_t i = 0; i < lookup.GetConstraintsCount(); i++) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1598 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1599 const DicomTagConstraint& constraint = lookup.GetConstraint(i); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1600 if (constraint.GetTag() == DICOM_TAG_MODALITIES_IN_STUDY) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1601 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1602 if ((constraint.GetConstraintType() == ConstraintType_Equal && constraint.GetValue().empty()) || |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1603 (constraint.GetConstraintType() == ConstraintType_List && constraint.GetValues().empty())) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1604 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1605 // Ignore universal lookup on "ModalitiesInStudy" (0008,0061), |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1606 // this should have been handled by the caller |
4218
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4205
diff
changeset
|
1607 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4205
diff
changeset
|
1608 return; |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1609 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1610 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1611 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1612 DicomTagConstraint modality(constraint); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1613 modality.SetTag(DICOM_TAG_MODALITY); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1614 seriesLookup.AddConstraint(modality); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1615 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1616 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1617 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1618 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1619 seriesLookup.AddConstraint(constraint); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1620 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1621 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1622 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1623 ModalitiesInStudyVisitor seriesVisitor(visitor.IsDicomAsJsonNeeded()); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1624 ApplyInternal(seriesVisitor, seriesLookup, ResourceType_Series, 0, 0); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1625 seriesVisitor.Forward(visitor, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1626 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1627 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1628 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1629 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1630 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1631 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1632 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1633 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1634 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1635 const std::string& publicId, |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4457
diff
changeset
|
1636 ResourceType level, |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1637 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1638 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1639 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1640 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1641 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1642 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1643 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1644 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1645 { |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4457
diff
changeset
|
1646 if (index_.LookupMetadata(target, publicId, level, metadata)) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1647 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1648 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1649 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1650 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1651 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1652 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1653 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1654 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1655 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1656 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1657 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1658 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1659 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1660 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1661 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1662 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1663 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1664 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1665 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1666 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1667 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1668 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1669 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1670 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1671 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1672 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1673 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1674 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1675 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1676 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1677 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1678 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1679 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1680 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1681 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1682 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1683 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1684 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1685 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1686 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1687 // Store for reuse |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1688 index_.SetMetadata(publicId, metadata, target); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1689 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1690 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1691 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1692 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1693 // Should never happen |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1694 return false; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1695 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1696 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1697 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1698 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1699 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1700 // No backward |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4457
diff
changeset
|
1701 return index_.LookupMetadata(target, publicId, level, metadata); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1702 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1703 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1704 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1705 |
2626 | 1706 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1707 const std::string& publicId) | |
1708 { | |
1709 std::list<std::string> instances; | |
1710 GetIndex().GetChildInstances(instances, publicId); | |
1711 | |
1712 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1713 | |
1714 for (std::list<std::string>::const_iterator | |
1715 it = instances.begin(); it != instances.end(); ++it) | |
1716 { | |
1717 job.AddInstance(*it); | |
1718 } | |
1719 } | |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1720 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1721 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1722 void ServerContext::SignalUpdatedModalities() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1723 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1724 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1725 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1726 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1727 GetPlugins().SignalUpdatedModalities(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1728 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1729 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1730 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1731 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1732 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1733 void ServerContext::SignalUpdatedPeers() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1734 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1735 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1736 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1737 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1738 GetPlugins().SignalUpdatedPeers(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1739 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1740 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1741 } |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1742 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1743 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1744 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1745 ServerContext::CreateStorageCommitment(const std::string& jobId, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1746 const std::string& transactionUid, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1747 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1748 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1749 const std::string& remoteAet, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1750 const std::string& calledAet) |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1751 { |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1752 #if ORTHANC_ENABLE_PLUGINS == 1 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1753 if (HasPlugins()) |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1754 { |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1755 return GetPlugins().CreateStorageCommitment( |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1756 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1757 } |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1758 #endif |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1759 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1760 return NULL; |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1761 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1762 |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1763 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1764 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1765 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1766 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1767 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1768 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1769 // Use Orthanc's built-in decoder, using the cache to speed-up |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1770 // things on multi-frame images |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1771 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1772 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1773 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1774 { |
4274 | 1775 ServerContext::DicomCacheLocker locker(*this, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1776 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1777 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1778 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1779 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1780 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1781 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1782 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1783 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1784 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1785 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1786 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1787 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1788 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1789 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1790 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1791 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1792 // TODO: Store the raw buffer in the DicomCacheLocker |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1793 std::string dicomContent; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1794 ReadDicom(dicomContent, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1795 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1796 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1797 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1798 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1799 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
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1800 } |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1801 catch (OrthancException& e) |
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|
1802 { |
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1803 } |
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1804 |
3928
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ServerContext::DecodeDicomFrame()
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1805 if (decoded.get() != NULL) |
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ServerContext::DecodeDicomFrame()
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1806 { |
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ServerContext::DecodeDicomFrame()
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1807 return decoded.release(); |
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ServerContext::DecodeDicomFrame()
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1808 } |
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diff
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1809 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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ServerContext::DecodeDicomFrame()
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1810 { |
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ServerContext::DecodeDicomFrame()
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1811 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
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1812 << "fallback to the built-in DCMTK decoder"; |
3928
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ServerContext::DecodeDicomFrame()
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1813 } |
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ServerContext::DecodeDicomFrame()
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1814 } |
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ServerContext::DecodeDicomFrame()
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|
1815 #endif |
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diff
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1816 |
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1817 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
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ServerContext::DecodeDicomFrame()
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1818 { |
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ServerContext::DecodeDicomFrame()
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|
1819 ServerContext::DicomCacheLocker locker(*this, publicId); |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1820 return locker.GetDicom().DecodeFrame(frameIndex); |
3928
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ServerContext::DecodeDicomFrame()
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1821 } |
3931
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diff
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1822 else |
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1823 { |
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diff
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|
1824 return NULL; // Built-in decoder is disabled |
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new configuration option: BuiltinDecoderTranscoderOrder
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1825 } |
3928
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ServerContext::DecodeDicomFrame()
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1826 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1827 |
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ServerContext::DecodeDicomFrame()
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diff
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|
1828 |
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ServerContext::DecodeDicomFrame()
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diff
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|
1829 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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1830 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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1831 { |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
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1832 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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1833 { |
4265
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diff
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|
1834 std::unique_ptr<ImageAccessor> decoded; |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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1835 try |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1836 { |
4507
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widening the use of DicomTransferSyntax enum
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|
1837 decoded.reset(dicom.DecodeFrame(frameIndex)); |
4265
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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1838 } |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1839 catch (OrthancException& e) |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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1840 { |
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1841 } |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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1842 |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
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|
1843 if (decoded.get() != NULL) |
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1844 { |
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1845 return decoded.release(); |
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|
1846 } |
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|
1847 } |
3928
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ServerContext::DecodeDicomFrame()
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|
1848 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1849 #if ORTHANC_ENABLE_PLUGINS == 1 |
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ServerContext::DecodeDicomFrame()
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|
1850 if (HasPlugins() && |
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ServerContext::DecodeDicomFrame()
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|
1851 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
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|
1852 { |
4265
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diff
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|
1853 std::unique_ptr<ImageAccessor> decoded; |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1854 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1855 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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parents:
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diff
changeset
|
1856 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
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|
1857 } |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1858 catch (OrthancException& e) |
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|
1859 { |
f9eaf14d3d19
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|
1860 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1861 |
3928
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ServerContext::DecodeDicomFrame()
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|
1862 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1863 { |
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ServerContext::DecodeDicomFrame()
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|
1864 return decoded.release(); |
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ServerContext::DecodeDicomFrame()
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diff
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|
1865 } |
3931
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diff
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|
1866 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1867 { |
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ServerContext::DecodeDicomFrame()
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diff
changeset
|
1868 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1869 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1870 } |
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ServerContext::DecodeDicomFrame()
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|
1871 } |
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ServerContext::DecodeDicomFrame()
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|
1872 #endif |
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|
1873 |
3931
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changeset
|
1874 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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|
1875 { |
4507
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widening the use of DicomTransferSyntax enum
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diff
changeset
|
1876 return dicom.DecodeFrame(frameIndex); |
3931
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|
1877 } |
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|
1878 else |
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new configuration option: BuiltinDecoderTranscoderOrder
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|
1879 { |
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diff
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|
1880 return NULL; |
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changeset
|
1881 } |
3928
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|
1882 } |
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ServerContext::DecodeDicomFrame()
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|
1883 |
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ServerContext::DecodeDicomFrame()
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changeset
|
1884 |
3980
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Fix decoding of DICOM images for plugins
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diff
changeset
|
1885 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
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|
1886 size_t size, |
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Fix decoding of DICOM images for plugins
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|
1887 unsigned int frameIndex) |
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Fix decoding of DICOM images for plugins
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changeset
|
1888 { |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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4507
diff
changeset
|
1889 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(dicom, size)); |
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Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
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diff
changeset
|
1890 return DecodeDicomFrame(*instance, frameIndex); |
3980
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Fix decoding of DICOM images for plugins
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diff
changeset
|
1891 } |
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Fix decoding of DICOM images for plugins
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|
1892 |
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Fix decoding of DICOM images for plugins
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|
1893 |
3894
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transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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diff
changeset
|
1894 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
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|
1895 std::string& sopInstanceUid, |
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|
1896 DicomStoreUserConnection& connection, |
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|
1897 const std::string& dicom, |
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|
1898 bool hasMoveOriginator, |
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|
1899 const std::string& moveOriginatorAet, |
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changeset
|
1900 uint16_t moveOriginatorId) |
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|
1901 { |
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changeset
|
1902 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
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diff
changeset
|
1903 |
3911
0ef7f4528be2
renamed option TranscodingEnabled to TranscodeDicomProtocol
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3910
diff
changeset
|
1904 if (!transcodeDicomProtocol_ || |
3894
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transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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diff
changeset
|
1905 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
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transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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parents:
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|
1906 { |
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transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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3839
diff
changeset
|
1907 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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parents:
3839
diff
changeset
|
1908 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
8f7ad4989fec
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parents:
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diff
changeset
|
1909 } |
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transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1910 else |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1911 { |
4465
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
1912 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), preferredTransferSyntax_, |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
1913 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
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parents:
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diff
changeset
|
1914 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1915 } |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1916 |
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1917 |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1918 bool ServerContext::Transcode(DicomImage& target, |
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preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1919 DicomImage& source /* in, "GetParsed()" possibly modified */, |
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preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1920 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1921 bool allowNewSopInstanceUid) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1922 { |
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preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1923 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
3941
diff
changeset
|
1924 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
1925 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1926 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1927 return true; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1928 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1929 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1930 |
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parents:
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diff
changeset
|
1931 #if ORTHANC_ENABLE_PLUGINS == 1 |
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preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1932 if (HasPlugins() && |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1933 GetPlugins().HasCustomTranscoder()) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
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diff
changeset
|
1934 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
1935 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
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parents:
3941
diff
changeset
|
1936 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1937 return true; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1938 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1939 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1940 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1941 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1942 << "fallback to the built-in DCMTK transcoder"; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1943 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1944 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1945 #endif |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1946 |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1947 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1948 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
1949 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1950 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1951 else |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1952 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1953 return false; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1954 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1955 } |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1956 |
4376
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1957 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1958 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1959 static const std::string redactedContent = "*** POTENTIAL PHI ***"; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1960 |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1961 const DicomTag& tag = element.GetTag(); |
4376
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1962 if (deidentifyLogs_ && ( |
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1963 logsDeidentifierRules_.IsCleared(tag) || |
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1964 logsDeidentifierRules_.IsRemoved(tag) || |
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1965 logsDeidentifierRules_.IsReplaced(tag))) |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1966 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1967 return redactedContent; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1968 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1969 else |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1970 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1971 return element.GetValue().GetContent(); |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1972 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1973 } |
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1974 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1975 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1976 void ServerContext::GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1977 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1978 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1979 syntaxes = acceptedTransferSyntaxes_; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1980 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1981 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1982 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1983 void ServerContext::SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1984 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1985 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1986 acceptedTransferSyntaxes_ = syntaxes; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1987 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1988 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1989 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1990 bool ServerContext::IsUnknownSopClassAccepted() |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1991 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1992 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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parents:
4465
diff
changeset
|
1993 return isUnknownSopClassAccepted_; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1994 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1995 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1996 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1997 void ServerContext::SetUnknownSopClassAccepted(bool accepted) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1998 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1999 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
2000 isUnknownSopClassAccepted_ = accepted; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
2001 } |
224 | 2002 } |