Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.cpp @ 4760:b2417ac5055a openssl-3.x
integration mainline->openssl-3.x
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 21 Jul 2021 10:48:14 +0200 |
parents | f0038043fb97 2f35e6b765e5 |
children | 70d2a97ca8cb |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
15 * General Public License for more details. | |
16 * | |
17 * You should have received a copy of the GNU General Public License | |
18 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
19 **/ | |
20 | |
21 | |
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22 #include "PrecompiledHeadersServer.h" |
224 | 23 #include "ServerContext.h" |
24 | |
4045 | 25 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h" |
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26 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h" |
4499 | 27 #include "../../OrthancFramework/Sources/DicomFormat/DicomStreamReader.h" |
4045 | 28 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h" |
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29 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h" |
4045 | 30 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" |
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31 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" |
4045 | 32 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h" |
33 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h" | |
34 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h" | |
35 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h" | |
36 #include "../../OrthancFramework/Sources/Logging.h" | |
37 #include "../../OrthancFramework/Sources/MetricsRegistry.h" | |
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38 #include "../Plugins/Engine/OrthancPlugins.h" |
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39 |
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40 #include "OrthancConfiguration.h" |
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41 #include "OrthancRestApi/OrthancRestApi.h" |
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42 #include "Search/DatabaseLookup.h" |
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43 #include "ServerJobs/OrthancJobUnserializer.h" |
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44 #include "ServerToolbox.h" |
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45 #include "StorageCommitmentReports.h" |
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46 |
794 | 47 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 48 |
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49 |
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50 static size_t DICOM_CACHE_SIZE = 128 * 1024 * 1024; // 128 MB |
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51 |
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52 |
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53 /** |
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54 * IMPORTANT: We make the assumption that the same instance of |
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55 * FileStorage can be accessed from multiple threads. This seems OK |
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56 * since the filesystem implements the required locking mechanisms, |
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57 * but maybe a read-writer lock on the "FileStorage" could be |
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58 * useful. Conversely, "ServerIndex" already implements mutex-based |
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59 * locking. |
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60 **/ |
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61 |
224 | 62 namespace Orthanc |
63 { | |
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64 static bool IsUncompressedTransferSyntax(DicomTransferSyntax transferSyntax) |
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65 { |
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66 return (transferSyntax == DicomTransferSyntax_LittleEndianImplicit || |
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67 transferSyntax == DicomTransferSyntax_LittleEndianExplicit || |
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68 transferSyntax == DicomTransferSyntax_BigEndianExplicit); |
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69 } |
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70 |
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71 |
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72 static bool IsTranscodableTransferSyntax(DicomTransferSyntax transferSyntax) |
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73 { |
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74 return ( |
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75 // Do not try to transcode DICOM videos (new in Orthanc 1.8.2) |
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76 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtMainLevel && |
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77 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtHighLevel && |
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78 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_1 && |
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79 transferSyntax != DicomTransferSyntax_MPEG4BDcompatibleHighProfileLevel4_1 && |
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80 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For2DVideo && |
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81 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For3DVideo && |
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82 transferSyntax != DicomTransferSyntax_MPEG4StereoHighProfileLevel4_2 && |
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83 transferSyntax != DicomTransferSyntax_HEVCMainProfileLevel5_1 && |
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84 transferSyntax != DicomTransferSyntax_HEVCMain10ProfileLevel5_1 && |
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85 |
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86 // Do not try to transcode special transfer syntaxes |
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87 transferSyntax != DicomTransferSyntax_RFC2557MimeEncapsulation && |
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88 transferSyntax != DicomTransferSyntax_XML); |
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89 } |
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90 |
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91 |
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92 void ServerContext::ChangeThread(ServerContext* that, |
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93 unsigned int sleepDelay) |
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94 { |
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95 while (!that->done_) |
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96 { |
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97 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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98 |
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99 if (obj.get() != NULL) |
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100 { |
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101 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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102 |
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103 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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104 for (ServerListeners::iterator it = that->listeners_.begin(); |
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105 it != that->listeners_.end(); ++it) |
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106 { |
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107 try |
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108 { |
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109 try |
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110 { |
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111 it->GetListener().SignalChange(change); |
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112 } |
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113 catch (std::bad_alloc&) |
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114 { |
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115 LOG(ERROR) << "Not enough memory while signaling a change"; |
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116 } |
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117 catch (...) |
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118 { |
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119 throw OrthancException(ErrorCode_InternalError); |
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120 } |
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121 } |
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122 catch (OrthancException& e) |
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123 { |
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124 LOG(ERROR) << "Error in the " << it->GetDescription() |
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125 << " callback while signaling a change: " << e.What() |
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126 << " (code " << e.GetErrorCode() << ")"; |
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127 } |
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128 } |
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129 } |
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130 } |
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131 } |
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132 |
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133 |
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134 void ServerContext::SaveJobsThread(ServerContext* that, |
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135 unsigned int sleepDelay) |
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136 { |
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137 static const boost::posix_time::time_duration PERIODICITY = |
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138 boost::posix_time::seconds(10); |
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139 |
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140 boost::posix_time::ptime next = |
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141 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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142 |
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143 while (!that->done_) |
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144 { |
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145 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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146 |
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147 if (that->haveJobsChanged_ || |
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148 boost::posix_time::microsec_clock::universal_time() >= next) |
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149 { |
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150 that->haveJobsChanged_ = false; |
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151 that->SaveJobsEngine(); |
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152 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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153 } |
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154 } |
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155 } |
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156 |
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157 |
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158 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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159 { |
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160 haveJobsChanged_ = true; |
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161 mainLua_.SignalJobSubmitted(jobId); |
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163 #if ORTHANC_ENABLE_PLUGINS == 1 | |
164 if (HasPlugins()) | |
165 { | |
166 GetPlugins().SignalJobSubmitted(jobId); | |
167 } | |
168 #endif | |
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169 } |
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170 |
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171 |
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172 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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173 { |
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174 haveJobsChanged_ = true; |
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175 mainLua_.SignalJobSuccess(jobId); |
4129 | 176 |
177 #if ORTHANC_ENABLE_PLUGINS == 1 | |
178 if (HasPlugins()) | |
179 { | |
180 GetPlugins().SignalJobSuccess(jobId); | |
181 } | |
182 #endif | |
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183 } |
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184 |
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185 |
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186 void ServerContext::SignalJobFailure(const std::string& jobId) |
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187 { |
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188 haveJobsChanged_ = true; |
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189 mainLua_.SignalJobFailure(jobId); |
4129 | 190 |
191 #if ORTHANC_ENABLE_PLUGINS == 1 | |
192 if (HasPlugins()) | |
193 { | |
194 GetPlugins().SignalJobFailure(jobId); | |
195 } | |
196 #endif | |
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197 } |
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198 |
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199 |
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200 void ServerContext::SetupJobsEngine(bool unitTesting, |
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201 bool loadJobsFromDatabase) |
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202 { |
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203 if (loadJobsFromDatabase) |
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204 { |
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205 std::string serialized; |
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206 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry, false /* not shared */)) |
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207 { |
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208 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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209 |
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210 try |
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211 { |
4205 | 212 OrthancJobUnserializer unserializer(*this); |
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213 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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214 } |
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215 catch (OrthancException& e) |
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216 { |
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217 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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218 } |
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219 } |
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220 else |
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221 { |
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222 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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223 } |
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224 } |
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225 else |
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226 { |
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227 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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228 } |
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229 |
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230 jobsEngine_.GetRegistry().SetObserver(*this); |
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231 jobsEngine_.Start(); |
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232 isJobsEngineUnserialized_ = true; |
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233 |
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234 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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235 } |
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236 |
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237 |
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238 void ServerContext::SaveJobsEngine() |
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239 { |
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240 if (saveJobs_) |
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241 { |
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242 LOG(TRACE) << "Serializing the content of the jobs engine"; |
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243 |
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244 try |
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245 { |
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246 Json::Value value; |
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247 jobsEngine_.GetRegistry().Serialize(value); |
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248 |
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249 std::string serialized; |
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250 Toolbox::WriteFastJson(serialized, value); |
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251 |
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252 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, false /* not shared */, serialized); |
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253 } |
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254 catch (OrthancException& e) |
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255 { |
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256 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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257 } |
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258 } |
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259 } |
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260 |
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261 |
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262 void ServerContext::PublishDicomCacheMetrics() |
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263 { |
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264 metricsRegistry_->SetValue("orthanc_dicom_cache_size", |
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265 static_cast<float>(dicomCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024)); |
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266 metricsRegistry_->SetValue("orthanc_dicom_cache_count", |
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267 static_cast<float>(dicomCache_.GetNumberOfItems())); |
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268 } |
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269 |
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270 |
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271 ServerContext::ServerContext(IDatabaseWrapper& database, |
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272 IStorageArea& area, |
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273 bool unitTesting, |
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274 size_t maxCompletedJobs) : |
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275 index_(*this, database, (unitTesting ? 20 : 500)), |
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276 area_(area), |
656 | 277 compressionEnabled_(false), |
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278 storeMD5_(true), |
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279 largeDicomThrottler_(1), |
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280 dicomCache_(DICOM_CACHE_SIZE), |
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281 mainLua_(*this), |
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282 filterLua_(*this), |
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283 luaListener_(*this), |
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284 jobsEngine_(maxCompletedJobs), |
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285 #if ORTHANC_ENABLE_PLUGINS == 1 |
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286 plugins_(NULL), |
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287 #endif |
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288 done_(false), |
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289 haveJobsChanged_(false), |
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290 isJobsEngineUnserialized_(false), |
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291 metricsRegistry_(new MetricsRegistry), |
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292 isHttpServerSecure_(true), |
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293 isExecuteLuaEnabled_(false), |
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294 overwriteInstances_(false), |
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295 dcmtkTranscoder_(new DcmtkTranscoder), |
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296 isIngestTranscoding_(false), |
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297 ingestTranscodingOfUncompressed_(true), |
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298 ingestTranscodingOfCompressed_(true), |
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299 preferredTransferSyntax_(DicomTransferSyntax_LittleEndianExplicit), |
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300 deidentifyLogs_(false) |
224 | 301 { |
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302 try |
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303 { |
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304 unsigned int lossyQuality; |
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305 |
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306 { |
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307 OrthancConfiguration::ReaderLock lock; |
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308 |
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309 queryRetrieveArchive_.reset( |
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310 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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311 mediaArchive_.reset( |
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312 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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313 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET(); |
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314 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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315 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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316 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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317 |
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318 // New configuration options in Orthanc 1.5.1 |
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319 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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320 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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321 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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322 |
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323 // New configuration option in Orthanc 1.6.0 |
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324 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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325 |
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326 // New options in Orthanc 1.7.0 |
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327 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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328 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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329 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
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330 |
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331 std::string s; |
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332 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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333 { |
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334 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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335 { |
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336 isIngestTranscoding_ = true; |
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337 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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338 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
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339 |
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340 // New options in Orthanc 1.8.2 |
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341 ingestTranscodingOfUncompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfUncompressed", true); |
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342 ingestTranscodingOfCompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfCompressed", true); |
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343 |
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344 LOG(WARNING) << " Ingest transcoding will " |
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345 << (ingestTranscodingOfUncompressed_ ? "be applied" : "*not* be applied") |
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346 << " to uncompressed transfer syntaxes (Little Endian Implicit/Explicit, Big Endian Explicit)"; |
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347 |
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348 LOG(WARNING) << " Ingest transcoding will " |
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349 << (ingestTranscodingOfCompressed_ ? "be applied" : "*not* be applied") |
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350 << " to compressed transfer syntaxes"; |
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351 } |
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352 else |
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353 { |
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354 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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355 "Unknown transfer syntax for ingest transcoding: " + s); |
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356 } |
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357 } |
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358 else |
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359 { |
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360 isIngestTranscoding_ = false; |
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361 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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362 } |
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363 |
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364 // New options in Orthanc 1.8.2 |
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365 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true)) |
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366 { |
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367 deidentifyLogs_ = true; |
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368 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled"; |
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369 |
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370 DicomVersion version = StringToDicomVersion( |
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371 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2021b")); |
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372 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is " |
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373 << EnumerationToString(version); |
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374 |
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375 logsDeidentifierRules_.SetupAnonymization(version); |
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376 } |
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377 else |
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378 { |
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379 deidentifyLogs_ = false; |
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380 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled"; |
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381 } |
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382 |
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383 // New options in Orthanc 1.9.0 |
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384 if (lock.GetConfiguration().LookupStringParameter(s, "DicomScuPreferredTransferSyntax") && |
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385 !LookupTransferSyntax(preferredTransferSyntax_, s)) |
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386 { |
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387 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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388 "Unknown preferred transfer syntax: " + s); |
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389 } |
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390 |
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391 CLOG(INFO, DICOM) << "Preferred transfer syntax for Orthanc C-STORE SCU: " |
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392 << GetTransferSyntaxUid(preferredTransferSyntax_); |
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393 |
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394 lock.GetConfiguration().GetAcceptedTransferSyntaxes(acceptedTransferSyntaxes_); |
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395 |
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396 isUnknownSopClassAccepted_ = lock.GetConfiguration().GetBooleanParameter("UnknownSopClassAccepted", false); |
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397 } |
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398 |
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399 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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400 |
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401 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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402 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
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403 |
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404 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
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405 } |
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406 catch (OrthancException&) |
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407 { |
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408 Stop(); |
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409 throw; |
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410 } |
224 | 411 } |
412 | |
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413 |
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414 |
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415 ServerContext::~ServerContext() |
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416 { |
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417 if (!done_) |
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418 { |
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419 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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420 Stop(); |
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421 } |
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422 } |
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423 |
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424 |
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425 void ServerContext::Stop() |
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426 { |
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427 if (!done_) |
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428 { |
1459 | 429 { |
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430 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 431 listeners_.clear(); |
432 } | |
433 | |
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434 done_ = true; |
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435 |
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436 if (changeThread_.joinable()) |
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437 { |
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438 changeThread_.join(); |
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439 } |
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440 |
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441 if (saveJobsThread_.joinable()) |
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442 { |
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443 saveJobsThread_.join(); |
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444 } |
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445 |
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446 jobsEngine_.GetRegistry().ResetObserver(); |
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447 |
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448 if (isJobsEngineUnserialized_) |
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449 { |
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450 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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451 SaveJobsEngine(); |
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452 } |
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453 |
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454 // Do not change the order below! |
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455 jobsEngine_.Stop(); |
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456 index_.Stop(); |
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457 } |
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458 } |
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459 |
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460 |
236 | 461 void ServerContext::SetCompressionEnabled(bool enabled) |
462 { | |
463 if (enabled) | |
464 LOG(WARNING) << "Disk compression is enabled"; | |
465 else | |
466 LOG(WARNING) << "Disk compression is disabled"; | |
467 | |
468 compressionEnabled_ = enabled; | |
469 } | |
470 | |
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471 |
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472 void ServerContext::RemoveFile(const std::string& fileUuid, |
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473 FileContentType type) |
227
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474 { |
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475 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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476 accessor.Remove(fileUuid, type); |
227
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477 } |
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478 |
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479 |
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480 StoreStatus ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
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481 DicomInstanceToStore& dicom, |
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482 StoreInstanceMode mode) |
1004
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483 { |
3814
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484 bool overwrite; |
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485 switch (mode) |
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486 { |
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487 case StoreInstanceMode_Default: |
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488 overwrite = overwriteInstances_; |
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489 break; |
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490 |
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491 case StoreInstanceMode_OverwriteDuplicate: |
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492 overwrite = true; |
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493 break; |
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494 |
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495 case StoreInstanceMode_IgnoreDuplicate: |
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496 overwrite = false; |
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497 break; |
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498 |
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499 default: |
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500 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4499 | 501 } |
502 | |
503 bool hasPixelDataOffset; | |
504 uint64_t pixelDataOffset; | |
505 hasPixelDataOffset = DicomStreamReader::LookupPixelDataOffset( | |
506 pixelDataOffset, dicom.GetBufferData(), dicom.GetBufferSize()); | |
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507 |
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508 DicomTransferSyntax transferSyntax; |
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509 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
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510 |
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511 DicomMap summary; |
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512 dicom.GetSummary(summary); |
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513 |
1004
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514 try |
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515 { |
3175
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516 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
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517 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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518 |
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519 DicomInstanceHasher hasher(summary); |
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520 resultPublicId = hasher.HashInstance(); |
1004
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521 |
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522 Json::Value dicomAsJson; |
4507
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523 dicom.GetDicomAsJson(dicomAsJson); |
4504
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524 |
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525 Json::Value simplifiedTags; |
4504
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526 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicomAsJson, DicomToJsonFormat_Human); |
1004
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527 |
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528 // Test if the instance must be filtered out |
1433
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529 bool accepted = true; |
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530 |
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531 { |
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532 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
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533 |
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534 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1433
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535 { |
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536 try |
1433
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537 { |
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538 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
1453
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539 { |
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540 accepted = false; |
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541 break; |
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542 } |
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543 } |
1453
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544 catch (OrthancException& e) |
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545 { |
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546 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
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547 << " callback while receiving an instance: " << e.What() |
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548 << " (code " << e.GetErrorCode() << ")"; |
1453
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549 throw; |
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550 } |
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551 } |
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552 } |
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553 |
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|
554 if (!accepted) |
1004
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|
555 { |
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|
556 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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|
557 return StoreStatus_FilteredOut; |
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558 } |
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|
559 |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
560 // Remove the file from the DicomCache (useful if |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
561 // "OverwriteInstances" is set to "true") |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
562 dicomCache_.Invalidate(resultPublicId); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
563 PublishDicomCacheMetrics(); |
2825
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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2815
diff
changeset
|
564 |
1549
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changeset
|
565 // TODO Should we use "gzip" instead? |
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|
566 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
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|
567 |
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changeset
|
568 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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changeset
|
569 FileContentType_Dicom, compression, storeMD5_); |
1004
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DicomInstanceToStore
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diff
changeset
|
570 |
a226e0959d8b
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changeset
|
571 ServerIndex::Attachments attachments; |
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|
572 attachments.push_back(dicomInfo); |
4500
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added safeguards in Orthanc::FileInfo
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|
573 |
4514
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|
574 FileInfo dicomUntilPixelData; |
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|
575 if (hasPixelDataOffset && |
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|
576 (!area_.HasReadRange() || |
4519 | 577 compressionEnabled_)) |
4500
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578 { |
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|
579 dicomUntilPixelData = accessor.Write(dicom.GetBufferData(), pixelDataOffset, |
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|
580 FileContentType_DicomUntilPixelData, compression, storeMD5_); |
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|
581 attachments.push_back(dicomUntilPixelData); |
4500
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|
582 } |
1004
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|
583 |
1067
ace99e272203
access metadata in plugins
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diff
changeset
|
584 typedef std::map<MetadataType, std::string> InstanceMetadata; |
ace99e272203
access metadata in plugins
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diff
changeset
|
585 InstanceMetadata instanceMetadata; |
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|
586 StoreStatus status = index_.Store( |
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changeset
|
587 instanceMetadata, summary, attachments, dicom.GetMetadata(), dicom.GetOrigin(), overwrite, |
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|
588 hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset); |
1004
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|
589 |
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changeset
|
590 // Only keep the metadata for the "instance" level |
4506
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|
591 dicom.ClearMetadata(); |
1067
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|
592 |
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changeset
|
593 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 594 it != instanceMetadata.end(); ++it) |
1067
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|
595 { |
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|
596 dicom.AddMetadata(ResourceType_Instance, it->first, it->second); |
1067
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diff
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|
597 } |
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diff
changeset
|
598 |
1004
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DicomInstanceToStore
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1002
diff
changeset
|
599 if (status != StoreStatus_Success) |
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diff
changeset
|
600 { |
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changeset
|
601 accessor.Remove(dicomInfo); |
4500
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added safeguards in Orthanc::FileInfo
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diff
changeset
|
602 |
4514
5b929e6b3c36
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changeset
|
603 if (dicomUntilPixelData.IsValid()) |
4500
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|
604 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
605 accessor.Remove(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
606 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
607 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
608 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
609 switch (status) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
610 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
611 case StoreStatus_Success: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
612 LOG(INFO) << "New instance stored"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
613 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
614 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
615 case StoreStatus_AlreadyStored: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
616 LOG(INFO) << "Already stored"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
617 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
618 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
619 case StoreStatus_Failure: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
620 LOG(ERROR) << "Store failure"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
621 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
622 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
623 default: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
624 // This should never happen |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
625 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
626 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
627 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
628 if (status == StoreStatus_Success || |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
629 status == StoreStatus_AlreadyStored) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
630 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
631 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
632 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
633 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
634 { |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
635 try |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
636 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
637 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
638 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
639 catch (OrthancException& e) |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
640 { |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
641 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
642 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
643 << " (code " << e.GetErrorCode() << ")"; |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
644 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
645 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
646 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
647 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
648 return status; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
649 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
650 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
651 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
652 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
653 { |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
654 summary.LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
655 } |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
656 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
657 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
658 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
659 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
660 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
661 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
662 StoreStatus ServerContext::Store(std::string& resultPublicId, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
663 DicomInstanceToStore& dicom, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
664 StoreInstanceMode mode) |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
665 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
666 if (!isIngestTranscoding_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
667 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
668 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
669 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
670 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
671 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
672 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
673 // Automated transcoding of incoming DICOM instance |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
674 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
675 bool transcode = false; |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
676 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
677 DicomTransferSyntax sourceSyntax; |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
678 if (!dicom.LookupTransferSyntax(sourceSyntax) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
679 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
680 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
681 // Don't transcode if the incoming DICOM is already in the proper transfer syntax |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
682 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
683 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
684 else if (!IsTranscodableTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
685 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
686 // Don't try to transcode video files, this is useless (new in |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
687 // Orthanc 1.8.2). This could be accepted in the future if |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
688 // video transcoding gets implemented. |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
689 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
690 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
691 else if (IsUncompressedTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
692 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
693 // This is an uncompressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
694 transcode = ingestTranscodingOfUncompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
695 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
696 else |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
697 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
698 // This is an compressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
699 transcode = ingestTranscodingOfCompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
700 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
701 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
702 if (!transcode) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
703 { |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
704 // No transcoding |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
705 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
706 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
707 else |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
708 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
709 // Trancoding |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
710 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
711 syntaxes.insert(ingestTransferSyntax_); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
712 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
713 IDicomTranscoder::DicomImage source; |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
714 source.SetExternalBuffer(dicom.GetBufferData(), dicom.GetBufferSize()); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
715 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
716 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
717 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
718 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
719 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
720 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
721 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*tmp)); |
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
722 toStore->SetOrigin(dicom.GetOrigin()); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
723 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
724 StoreStatus ok = StoreAfterTranscoding(resultPublicId, *toStore, mode); |
3938 | 725 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
726 | |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
727 return ok; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
728 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
729 else |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
730 { |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
731 // Cannot transcode => store the original file |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
732 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
733 } |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
734 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
735 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
736 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
737 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
738 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
739 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
740 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
741 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
742 { |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
743 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
744 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
745 if (!index_.LookupAttachment(attachment, revision, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
746 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
747 throw OrthancException(ErrorCode_UnknownResource); |
236 | 748 } |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
749 else |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
750 { |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
751 StorageAccessor accessor(area_, GetMetricsRegistry()); |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
752 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
753 } |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
754 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
755 |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
756 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
757 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
758 FileContentType attachmentType, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
759 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
760 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
761 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
762 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
763 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
764 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
765 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
766 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
767 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
768 if (!index_.LookupAttachment(attachment, revision, resourceId, attachmentType)) |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
769 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
770 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
771 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
772 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
773 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
774 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
775 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
776 return; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
777 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
778 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
779 std::string content; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
780 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
781 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
782 accessor.Read(content, attachment); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
783 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
784 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
785 content.size(), attachmentType, compression, storeMD5_); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
786 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
787 try |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
788 { |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
789 int64_t newRevision; // ignored |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
790 StoreStatus status = index_.AddAttachment(newRevision, modified, resourceId, |
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
791 true, revision, modified.GetUncompressedMD5()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
792 if (status != StoreStatus_Success) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
793 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
794 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
795 throw OrthancException(ErrorCode_Database); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
796 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
797 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
798 catch (OrthancException&) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
799 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
800 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
801 throw; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
802 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
803 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
804 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
805 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
806 static void InjectEmptyPixelData(Json::Value& dicomAsJson) |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
807 { |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
808 // This is for backward compatibility with Orthanc <= 1.9.0 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
809 Json::Value pixelData = Json::objectValue; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
810 pixelData["Name"] = "PixelData"; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
811 pixelData["Type"] = "Null"; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
812 pixelData["Value"] = Json::nullValue; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
813 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
814 dicomAsJson["7fe0,0010"] = pixelData; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
815 } |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
816 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
817 |
2124 | 818 void ServerContext::ReadDicomAsJson(Json::Value& result, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
819 const std::string& instancePublicId, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
820 const std::set<DicomTag>& ignoreTagLength) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
821 { |
4514
5b929e6b3c36
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822 /** |
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823 * CASE 1: The DICOM file, truncated at pixel data, is available |
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|
824 * as an attachment (it was created either because the storage |
4666 | 825 * area does not support range reads, or if "StorageCompression" |
4514
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826 * is enabled). Simply return this attachment. |
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827 **/ |
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828 |
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829 FileInfo attachment; |
4629 | 830 int64_t revision; // Ignored |
4514
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831 |
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832 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData)) |
2409
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833 { |
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834 std::string dicom; |
4513
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835 |
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|
836 { |
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837 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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838 accessor.Read(dicom, attachment); |
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839 } |
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840 |
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841 ParsedDicomFile parsed(dicom); |
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842 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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843 InjectEmptyPixelData(result); |
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844 } |
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845 else |
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|
846 { |
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847 /** |
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848 * The truncated DICOM file is not stored as a standalone |
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849 * attachment. Lookup whether the pixel data offset has already |
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850 * been computed for this instance. |
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851 **/ |
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852 |
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853 bool hasPixelDataOffset; |
4519 | 854 uint64_t pixelDataOffset = 0; // dummy initialization |
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855 |
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856 { |
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857 std::string s; |
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858 if (index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
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859 MetadataType_Instance_PixelDataOffset)) |
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860 { |
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861 hasPixelDataOffset = false; |
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862 |
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863 if (!s.empty()) |
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864 { |
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865 try |
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|
866 { |
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867 pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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868 hasPixelDataOffset = true; |
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869 } |
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870 catch (boost::bad_lexical_cast&) |
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871 { |
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872 } |
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|
873 } |
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diff
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|
874 |
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875 if (!hasPixelDataOffset) |
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876 { |
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|
877 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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878 } |
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879 } |
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880 else |
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|
881 { |
4514
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882 // This instance was created by a version of Orthanc <= 1.9.0 |
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883 hasPixelDataOffset = false; |
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884 } |
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885 } |
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886 |
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887 |
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888 if (hasPixelDataOffset && |
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889 area_.HasReadRange() && |
4627
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890 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom) && |
4514
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891 attachment.GetCompressionType() == CompressionType_None) |
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892 { |
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893 /** |
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894 * CASE 2: The pixel data offset is known, AND that a range read |
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895 * can be used to retrieve the truncated DICOM file. Note that |
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896 * this case cannot be used if "StorageCompression" option is |
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897 * "true". |
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898 **/ |
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899 |
4519 | 900 std::unique_ptr<IMemoryBuffer> dicom; |
901 { | |
902 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_storage_read_range_duration_ms"); | |
903 dicom.reset(area_.ReadRange(attachment.GetUuid(), FileContentType_Dicom, 0, pixelDataOffset)); | |
904 } | |
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905 |
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906 if (dicom.get() == NULL) |
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907 { |
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908 throw OrthancException(ErrorCode_InternalError); |
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909 } |
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910 else |
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911 { |
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912 assert(dicom->GetSize() == pixelDataOffset); |
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913 ParsedDicomFile parsed(dicom->GetData(), dicom->GetSize()); |
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914 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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915 InjectEmptyPixelData(result); |
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916 } |
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917 } |
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918 else if (ignoreTagLength.empty() && |
4627
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919 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomAsJson)) |
4514
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920 { |
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921 /** |
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922 * CASE 3: This instance was created using Orthanc <= |
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923 * 1.9.0. Reuse the old "DICOM-as-JSON" attachment if available. |
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924 * This is for backward compatibility: A call to |
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925 * "/tools/invalidate-tags" or to one flavors of |
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926 * "/.../.../reconstruct" will disable this case. |
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927 **/ |
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928 |
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929 std::string dicomAsJson; |
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930 |
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931 { |
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932 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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|
933 accessor.Read(dicomAsJson, attachment); |
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|
934 } |
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|
935 |
4514
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|
936 if (!Toolbox::ReadJson(result, dicomAsJson)) |
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937 { |
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938 throw OrthancException(ErrorCode_CorruptedFile, |
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939 "Corrupted DICOM-as-JSON attachment of instance: " + instancePublicId); |
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|
940 } |
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|
941 } |
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942 else |
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943 { |
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944 /** |
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|
945 * CASE 4: Neither the truncated DICOM file is accessible, nor |
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946 * the DICOM-as-JSON summary. We have to retrieve the full DICOM |
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947 * file from the storage area. |
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948 **/ |
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949 |
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950 std::string dicom; |
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951 ReadDicom(dicom, instancePublicId); |
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952 |
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953 ParsedDicomFile parsed(dicom); |
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954 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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955 |
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956 if (!hasPixelDataOffset) |
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957 { |
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958 /** |
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959 * The pixel data offset was never computed for this |
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960 * instance, which indicates that it was created using |
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961 * Orthanc <= 1.9.0, or that calls to |
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962 * "LookupPixelDataOffset()" from earlier versions of |
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963 * Orthanc have failed. Try again this precomputation now |
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964 * for future calls. |
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965 **/ |
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966 if (DicomStreamReader::LookupPixelDataOffset(pixelDataOffset, dicom) && |
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967 pixelDataOffset < dicom.size()) |
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968 { |
4623
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969 index_.OverwriteMetadata(instancePublicId, MetadataType_Instance_PixelDataOffset, |
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970 boost::lexical_cast<std::string>(pixelDataOffset)); |
4514
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|
971 |
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|
972 if (!area_.HasReadRange() || |
4519 | 973 compressionEnabled_) |
4514
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|
974 { |
4627
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975 int64_t newRevision; |
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976 AddAttachment(newRevision, instancePublicId, FileContentType_DicomUntilPixelData, |
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977 dicom.empty() ? NULL: dicom.c_str(), pixelDataOffset, |
4640
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"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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|
978 false /* no old revision */, -1 /* dummy revision */, "" /* dummy MD5 */); |
4514
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|
979 } |
4513
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980 } |
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|
981 } |
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|
982 } |
226
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|
983 } |
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984 } |
227
209ca3f6db62
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985 |
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986 |
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987 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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ServerContext::ReadDicomUntilPixelData()
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988 const std::string& instancePublicId) |
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989 { |
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990 std::set<DicomTag> ignoreTagLength; |
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991 ReadDicomAsJson(result, instancePublicId, ignoreTagLength); |
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992 } |
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993 |
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994 |
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995 void ServerContext::ReadDicom(std::string& dicom, |
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996 const std::string& instancePublicId) |
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997 { |
4627
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998 int64_t revision; |
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999 ReadAttachment(dicom, revision, instancePublicId, FileContentType_Dicom, true /* uncompress */); |
4509
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1000 } |
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1001 |
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1002 |
4511
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ServerContext::ReadDicomUntilPixelData()
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1003 bool ServerContext::ReadDicomUntilPixelData(std::string& dicom, |
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1004 const std::string& instancePublicId) |
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1005 { |
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1006 if (!area_.HasReadRange()) |
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1007 { |
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1008 return false; |
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1009 } |
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1010 |
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ServerContext::ReadDicomUntilPixelData()
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1011 FileInfo attachment; |
4627
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1012 int64_t revision; // Ignored |
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1013 if (!index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom)) |
4511
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1014 { |
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1015 throw OrthancException(ErrorCode_InternalError, |
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1016 "Unable to read the DICOM file of instance " + instancePublicId); |
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1017 } |
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1018 |
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1019 std::string s; |
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1020 |
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1021 if (attachment.GetCompressionType() == CompressionType_None && |
4623
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1022 index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
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1023 MetadataType_Instance_PixelDataOffset) && |
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1024 !s.empty()) |
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1025 { |
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1026 try |
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1027 { |
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1028 uint64_t pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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1029 |
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1030 std::unique_ptr<IMemoryBuffer> buffer( |
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ServerContext::ReadDicomUntilPixelData()
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1031 area_.ReadRange(attachment.GetUuid(), attachment.GetContentType(), 0, pixelDataOffset)); |
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1032 buffer->MoveToString(dicom); |
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1033 return true; // Success |
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1034 } |
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1035 catch (boost::bad_lexical_cast&) |
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1036 { |
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1037 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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1038 } |
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1039 } |
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1040 |
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1041 return false; |
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1042 } |
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1043 |
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1044 |
2128
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1045 void ServerContext::ReadAttachment(std::string& result, |
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1046 int64_t& revision, |
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1047 const std::string& instancePublicId, |
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1048 FileContentType content, |
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1049 bool uncompressIfNeeded) |
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1050 { |
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1051 FileInfo attachment; |
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1052 if (!index_.LookupAttachment(attachment, revision, instancePublicId, content)) |
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1053 { |
2956 | 1054 throw OrthancException(ErrorCode_InternalError, |
1055 "Unable to read attachment " + EnumerationToString(content) + | |
1056 " of instance " + instancePublicId); | |
227
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1057 } |
1550 | 1058 |
3175
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1059 assert(attachment.GetContentType() == content); |
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1060 |
1550 | 1061 { |
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1062 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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1063 |
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1064 if (uncompressIfNeeded) |
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1065 { |
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1066 accessor.Read(result, attachment); |
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1067 } |
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1068 else |
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1069 { |
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1070 // Do not uncompress the content of the storage area, return the |
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1071 // raw data |
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1072 accessor.ReadRaw(result, attachment); |
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1073 } |
1550 | 1074 } |
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1075 } |
285
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1076 |
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1077 |
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1078 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& context, |
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1079 const std::string& instancePublicId) : |
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1080 context_(context), |
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1081 instancePublicId_(instancePublicId) |
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1082 { |
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1083 accessor_.reset(new ParsedDicomCache::Accessor(context_.dicomCache_, instancePublicId)); |
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1084 |
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1085 if (!accessor_->IsValid()) |
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1086 { |
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1087 accessor_.reset(NULL); |
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1088 |
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1089 // Throttle to avoid loading several large DICOM files simultaneously |
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1090 largeDicomLocker_.reset(new Semaphore::Locker(context.largeDicomThrottler_)); |
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1091 |
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1092 std::string content; |
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1093 context_.ReadDicom(content, instancePublicId); |
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1094 |
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1095 // Release the throttle if loading "small" DICOM files (under |
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1096 // 50MB, which is an arbitrary value) |
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1097 if (content.size() < 50 * 1024 * 1024) |
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1098 { |
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1099 largeDicomLocker_.reset(NULL); |
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1100 } |
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1101 |
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1102 dicom_.reset(new ParsedDicomFile(content)); |
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1103 dicomSize_ = content.size(); |
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1104 } |
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1105 |
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1106 assert(accessor_.get() != NULL || |
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1107 dicom_.get() != NULL); |
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1108 } |
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1109 |
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1110 |
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1111 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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1112 { |
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1113 if (dicom_.get() != NULL) |
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1114 { |
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1115 try |
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1116 { |
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1117 context_.dicomCache_.Acquire(instancePublicId_, dicom_.release(), dicomSize_); |
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1118 context_.PublishDicomCacheMetrics(); |
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1119 } |
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1120 catch (OrthancException&) |
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1121 { |
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1122 } |
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1123 } |
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1124 } |
304 | 1125 |
1126 | |
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1127 ParsedDicomFile& ServerContext::DicomCacheLocker::GetDicom() const |
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1128 { |
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1129 if (dicom_.get() != NULL) |
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1130 { |
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1131 return *dicom_; |
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1132 } |
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1133 else |
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1134 { |
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1135 assert(accessor_.get() != NULL); |
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1136 return accessor_->GetDicom(); |
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1137 } |
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1138 } |
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1139 |
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1140 |
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1141 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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1142 { |
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1143 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
1549
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1144 storeMD5_ = storeMD5; |
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1145 } |
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1146 |
699
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1147 |
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1148 bool ServerContext::AddAttachment(int64_t& newRevision, |
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1149 const std::string& resourceId, |
699
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1150 FileContentType attachmentType, |
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1151 const void* data, |
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1152 size_t size, |
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1153 bool hasOldRevision, |
4640
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1154 int64_t oldRevision, |
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"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1155 const std::string& oldMD5) |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1156 { |
2929e17f8447
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1157 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1158 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1159 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1160 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1161 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
1162 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1163 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
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add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1164 |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1165 try |
699
2929e17f8447
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1166 { |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1167 StoreStatus status = index_.AddAttachment( |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1168 newRevision, attachment, resourceId, hasOldRevision, oldRevision, oldMD5); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1169 if (status != StoreStatus_Success) |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1170 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1171 accessor.Remove(attachment); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1172 return false; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1173 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1174 else |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1175 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1176 return true; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1177 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1178 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1179 catch (OrthancException&) |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1180 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1181 // Fixed in Orthanc 1.9.6 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1182 accessor.Remove(attachment); |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1183 throw; |
699
2929e17f8447
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1184 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1185 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1186 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1187 |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1188 bool ServerContext::DeleteResource(Json::Value& remainingAncestor, |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1189 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1190 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1191 { |
2507 | 1192 if (expectedType == ResourceType_Instance) |
1193 { | |
1194 // remove the file from the DicomCache | |
1195 dicomCache_.Invalidate(uuid); | |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1196 PublishDicomCacheMetrics(); |
2507 | 1197 } |
1198 | |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1199 return index_.DeleteResource(remainingAncestor, uuid, expectedType); |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1200 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1201 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1202 |
1198 | 1203 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1204 { |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1205 if (change.GetResourceType() == ResourceType_Instance && |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1206 change.GetChangeType() == ChangeType_Deleted) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1207 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1208 dicomCache_.Invalidate(change.GetPublicId()); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1209 PublishDicomCacheMetrics(); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1210 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1211 |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
1212 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1213 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1214 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1215 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1216 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1217 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1218 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1219 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1220 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1221 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1222 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1223 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1224 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1225 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1226 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1227 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1228 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1229 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1230 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1231 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1232 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1233 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1234 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1235 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1236 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1237 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1238 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1239 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1240 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1241 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1242 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1243 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1244 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1245 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1246 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1247 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1248 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1249 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1250 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1251 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1252 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1253 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1254 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1255 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1256 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1257 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1258 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1259 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1260 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1261 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1262 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1263 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1264 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1265 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1266 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1267 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1268 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1269 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1270 { |
2136
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uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
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1271 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
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1272 return (plugins_ != NULL); |
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1273 #else |
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1274 return false; |
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|
1275 #endif |
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|
1276 } |
1757
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ServerContext::Apply lookup
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|
1277 |
98abb8d7f905
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1278 |
4196
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1279 void ServerContext::ApplyInternal(ILookupVisitor& visitor, |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1280 const DatabaseLookup& lookup, |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1281 ResourceType queryLevel, |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
changeset
|
1282 size_t since, |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1283 size_t limit) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1284 { |
3679
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|
1285 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
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|
1286 limitFindInstances_ : limitFindResults_); |
3015
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|
1287 |
1757
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1288 std::vector<std::string> resources, instances; |
3015
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1289 |
3204
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|
1290 { |
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|
1291 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
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1292 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit); |
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|
1293 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
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|
1294 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
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|
1295 bool complete = (databaseLimit == 0 || |
3204
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fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1296 resources.size() <= databaseLimit); |
1757
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ServerContext::Apply lookup
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diff
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|
1297 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1298 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1299 |
3679
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|
1300 /** |
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1301 * "resources" contains the Orthanc ID of the resource at level |
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|
1302 * "queryLevel", "instances" contains one the Orthanc ID of one |
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1303 * sample instance from this resource. |
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|
1304 **/ |
1757
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|
1305 assert(resources.size() == instances.size()); |
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ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1306 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1307 size_t countResults = 0; |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1308 size_t skipped = 0; |
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|
1309 |
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|
1310 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
3012
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|
1311 |
1757
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|
1312 for (size_t i = 0; i < instances.size(); i++) |
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ServerContext::Apply lookup
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|
1313 { |
3012
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diff
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|
1314 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
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|
1315 // the disk if only "main DICOM tags" are to be returned |
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|
1316 |
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1317 std::unique_ptr<Json::Value> dicomAsJson; |
3012
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1318 |
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|
1319 bool hasOnlyMainDicomTags; |
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1320 DicomMap dicom; |
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|
1321 |
3677
4182cde57afb
refactoring FindStorageAccessMode
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parents:
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diff
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|
1322 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly || |
4182cde57afb
refactoring FindStorageAccessMode
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|
1323 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer || |
3015
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|
1324 lookup.HasOnlyMainDicomTags()) |
3012
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1325 { |
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1326 // Case (1): The main DICOM tags, as stored in the database, |
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|
1327 // are sufficient to look for match |
3015
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|
1328 |
3679
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|
1329 DicomMap tmp; |
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|
1330 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i])) |
3015
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|
1331 { |
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|
1332 // The instance has been removed during the execution of the |
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|
1333 // lookup, ignore it |
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|
1334 continue; |
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|
1335 } |
3679
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|
1336 |
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1337 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
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changeset
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1338 // level of interest for the query |
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|
1339 switch (queryLevel) |
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|
1340 { |
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1341 // WARNING: Don't reorder cases below, and don't add "break" |
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1342 case ResourceType_Instance: |
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changeset
|
1343 dicom.MergeMainDicomTags(tmp, ResourceType_Instance); |
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1344 |
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1345 case ResourceType_Series: |
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|
1346 dicom.MergeMainDicomTags(tmp, ResourceType_Series); |
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|
1347 |
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1348 case ResourceType_Study: |
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|
1349 dicom.MergeMainDicomTags(tmp, ResourceType_Study); |
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1350 |
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1351 case ResourceType_Patient: |
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|
1352 dicom.MergeMainDicomTags(tmp, ResourceType_Patient); |
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1353 break; |
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1354 |
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changeset
|
1355 default: |
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|
1356 throw OrthancException(ErrorCode_InternalError); |
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|
1357 } |
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|
1358 |
3012
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|
1359 hasOnlyMainDicomTags = true; |
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1360 } |
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1361 else |
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|
1362 { |
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1363 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
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1364 // the storage area |
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|
1365 dicomAsJson.reset(new Json::Value); |
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|
1366 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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|
1367 |
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|
1368 dicom.FromDicomAsJson(*dicomAsJson); |
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|
1369 |
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|
1370 // This map contains the entire JSON, i.e. more than the main DICOM tags |
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parents:
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diff
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|
1371 hasOnlyMainDicomTags = false; |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1372 } |
1757
98abb8d7f905
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1373 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1374 if (lookup.IsMatch(dicom)) |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1375 { |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1376 if (skipped < since) |
1757
98abb8d7f905
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1377 { |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
1378 skipped++; |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1379 } |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
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|
1380 else if (limit != 0 && |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1381 countResults >= limit) |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1382 { |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1383 // Too many results, don't mark as complete |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1384 complete = false; |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1385 break; |
1757
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1386 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1387 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1388 { |
3677
4182cde57afb
refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1389 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer || |
4182cde57afb
refactoring FindStorageAccessMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1390 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) && |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1391 dicomAsJson.get() == NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1392 isDicomAsJsonNeeded) |
3012
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1393 { |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1394 dicomAsJson.reset(new Json::Value); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1395 ReadDicomAsJson(*dicomAsJson, instances[i]); |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1396 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1397 |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1398 if (hasOnlyMainDicomTags) |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1399 { |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1400 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1401 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1402 } |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1403 else |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
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|
1404 { |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
1405 // Remove the non-main DICOM tags from "dicom" if Case (2) |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
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|
1406 // was used, for consistency with Case (1) |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1407 |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1408 DicomMap mainDicomTags; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1409 mainDicomTags.ExtractMainDicomTags(dicom); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1410 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1411 } |
af1530b45290
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1412 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
1413 countResults ++; |
1757
98abb8d7f905
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diff
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|
1414 } |
98abb8d7f905
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diff
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|
1415 } |
98abb8d7f905
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1416 } |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1417 |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
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|
1418 if (complete) |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
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|
1419 { |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
1420 visitor.MarkAsComplete(); |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1421 } |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1422 |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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3001
diff
changeset
|
1423 LOG(INFO) << "Number of matching resources: " << countResults; |
1757
98abb8d7f905
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diff
changeset
|
1424 } |
98abb8d7f905
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1425 |
2626 | 1426 |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1427 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1428 namespace |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1429 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1430 class ModalitiesInStudyVisitor : public ServerContext::ILookupVisitor |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1431 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1432 private: |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1433 class Study : public boost::noncopyable |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1434 { |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1435 private: |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1436 std::string orthancId_; |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1437 std::string instanceId_; |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1438 DicomMap mainDicomTags_; |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1439 Json::Value dicomAsJson_; |
37310bb1cd30
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diff
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|
1440 std::set<std::string> modalitiesInStudy_; |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1441 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1442 public: |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1443 Study(const std::string& instanceId, |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1444 const DicomMap& seriesTags) : |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1445 instanceId_(instanceId), |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1446 dicomAsJson_(Json::nullValue) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1447 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1448 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1449 DicomMap tmp; |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
changeset
|
1450 tmp.Assign(seriesTags); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
changeset
|
1451 tmp.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "dummy", false); |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
changeset
|
1452 DicomInstanceHasher hasher(tmp); |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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changeset
|
1453 orthancId_ = hasher.HashStudy(); |
37310bb1cd30
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|
1454 } |
37310bb1cd30
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|
1455 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
changeset
|
1456 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Study); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
changeset
|
1457 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Patient); |
37310bb1cd30
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changeset
|
1458 AddModality(seriesTags); |
37310bb1cd30
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|
1459 } |
37310bb1cd30
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|
1460 |
37310bb1cd30
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changeset
|
1461 void AddModality(const DicomMap& seriesTags) |
37310bb1cd30
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|
1462 { |
37310bb1cd30
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changeset
|
1463 std::string modality; |
37310bb1cd30
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|
1464 if (seriesTags.LookupStringValue(modality, DICOM_TAG_MODALITY, false) && |
37310bb1cd30
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|
1465 !modality.empty()) |
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|
1466 { |
37310bb1cd30
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|
1467 modalitiesInStudy_.insert(modality); |
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1468 } |
37310bb1cd30
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1469 } |
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1470 |
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1471 void SetDicomAsJson(const Json::Value& dicomAsJson) |
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1472 { |
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1473 dicomAsJson_ = dicomAsJson; |
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1474 } |
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1475 |
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1476 const std::string& GetOrthancId() const |
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1477 { |
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1478 return orthancId_; |
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1479 } |
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1480 |
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1481 const std::string& GetInstanceId() const |
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1482 { |
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1483 return instanceId_; |
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1484 } |
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1485 |
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1486 const DicomMap& GetMainDicomTags() const |
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1487 { |
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1488 return mainDicomTags_; |
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1489 } |
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1490 |
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1491 const Json::Value* GetDicomAsJson() const |
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1492 { |
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1493 if (dicomAsJson_.type() == Json::nullValue) |
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1494 { |
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|
1495 return NULL; |
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1496 } |
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1497 else |
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1498 { |
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1499 return &dicomAsJson_; |
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1500 } |
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1501 } |
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1502 }; |
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1503 |
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1504 typedef std::map<std::string, Study*> Studies; |
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1505 |
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|
1506 bool isDicomAsJsonNeeded_; |
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1507 bool complete_; |
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1508 Studies studies_; |
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1509 |
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|
1510 public: |
4205 | 1511 explicit ModalitiesInStudyVisitor(bool isDicomAsJsonNeeded) : |
1512 isDicomAsJsonNeeded_(isDicomAsJsonNeeded), | |
1513 complete_(false) | |
4196
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1514 { |
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1515 } |
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1516 |
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|
1517 ~ModalitiesInStudyVisitor() |
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1518 { |
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1519 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it) |
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1520 { |
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|
1521 assert(it->second != NULL); |
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1522 delete it->second; |
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1523 } |
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1524 |
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1525 studies_.clear(); |
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|
1526 } |
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1527 |
4205 | 1528 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
4196
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1529 { |
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1530 return isDicomAsJsonNeeded_; |
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1531 } |
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1532 |
4205 | 1533 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
4196
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1534 { |
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1535 complete_ = true; |
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1536 } |
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|
1537 |
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|
1538 virtual void Visit(const std::string& publicId, |
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1539 const std::string& instanceId, |
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1540 const DicomMap& seriesTags, |
4205 | 1541 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE |
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1542 { |
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|
1543 std::string studyInstanceUid; |
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1544 if (seriesTags.LookupStringValue(studyInstanceUid, DICOM_TAG_STUDY_INSTANCE_UID, false)) |
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1545 { |
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1546 Studies::iterator found = studies_.find(studyInstanceUid); |
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1547 if (found == studies_.end()) |
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1548 { |
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1549 // New study |
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1550 std::unique_ptr<Study> study(new Study(instanceId, seriesTags)); |
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1551 |
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1552 if (dicomAsJson != NULL) |
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1553 { |
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1554 study->SetDicomAsJson(*dicomAsJson); |
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1555 } |
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1556 |
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|
1557 studies_[studyInstanceUid] = study.release(); |
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1558 } |
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1559 else |
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1560 { |
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1561 // Already existing study |
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1562 found->second->AddModality(seriesTags); |
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1563 } |
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1564 } |
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1565 } |
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1566 |
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1567 void Forward(ILookupVisitor& callerVisitor, |
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1568 size_t since, |
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|
1569 size_t limit) const |
4205 | 1570 { |
4196
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1571 size_t index = 0; |
37310bb1cd30
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1572 size_t countForwarded = 0; |
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|
1573 |
37310bb1cd30
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1574 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it, index++) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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1575 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1576 if (limit == 0 || |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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1577 (index >= since && |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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1578 index < limit)) |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1579 { |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1580 assert(it->second != NULL); |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1581 const Study& study = *it->second; |
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changeset
|
1582 |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1583 countForwarded++; |
37310bb1cd30
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diff
changeset
|
1584 callerVisitor.Visit(study.GetOrthancId(), study.GetInstanceId(), |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1585 study.GetMainDicomTags(), study.GetDicomAsJson()); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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1586 } |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1587 } |
37310bb1cd30
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|
1588 |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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1589 if (countForwarded == studies_.size()) |
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1590 { |
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|
1591 callerVisitor.MarkAsComplete(); |
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1592 } |
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1593 } |
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1594 }; |
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1595 } |
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1596 |
37310bb1cd30
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Sebastien Jodogne <s.jodogne@gmail.com>
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1597 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1598 void ServerContext::Apply(ILookupVisitor& visitor, |
37310bb1cd30
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|
1599 const DatabaseLookup& lookup, |
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1600 ResourceType queryLevel, |
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1601 size_t since, |
37310bb1cd30
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1602 size_t limit) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1603 { |
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|
1604 if (queryLevel == ResourceType_Study && |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1605 lookup.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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1606 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1607 // Convert the study-level query, into a series-level query, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1608 // where "ModalitiesInStudy" is replaced by "Modality" |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1609 DatabaseLookup seriesLookup; |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1610 |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1611 for (size_t i = 0; i < lookup.GetConstraintsCount(); i++) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1612 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1613 const DicomTagConstraint& constraint = lookup.GetConstraint(i); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1614 if (constraint.GetTag() == DICOM_TAG_MODALITIES_IN_STUDY) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
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|
1615 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1616 if ((constraint.GetConstraintType() == ConstraintType_Equal && constraint.GetValue().empty()) || |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1617 (constraint.GetConstraintType() == ConstraintType_List && constraint.GetValues().empty())) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
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|
1618 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1619 // Ignore universal lookup on "ModalitiesInStudy" (0008,0061), |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1620 // this should have been handled by the caller |
4218
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4205
diff
changeset
|
1621 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4205
diff
changeset
|
1622 return; |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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4143
diff
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|
1623 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
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|
1624 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1625 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1626 DicomTagConstraint modality(constraint); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1627 modality.SetTag(DICOM_TAG_MODALITY); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1628 seriesLookup.AddConstraint(modality); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
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|
1629 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
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|
1630 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1631 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1632 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1633 seriesLookup.AddConstraint(constraint); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1634 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1635 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1636 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1637 ModalitiesInStudyVisitor seriesVisitor(visitor.IsDicomAsJsonNeeded()); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1638 ApplyInternal(seriesVisitor, seriesLookup, ResourceType_Series, 0, 0); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1639 seriesVisitor.Forward(visitor, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1640 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1641 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1642 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1643 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1644 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1645 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1646 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1647 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1648 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1649 const std::string& publicId, |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4457
diff
changeset
|
1650 ResourceType level, |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1651 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1652 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1653 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1654 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1655 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1656 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1657 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1658 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1659 { |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1660 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1661 if (index_.LookupMetadata(target, revision, publicId, level, metadata)) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1662 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1663 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1664 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1665 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1666 { |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1667 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1668 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1669 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1670 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1671 |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1672 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1673 |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1674 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1675 { |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1676 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1677 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1678 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1679 |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1680 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1681 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1682 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1683 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1684 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1685 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1686 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1687 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1688 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1689 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1690 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1691 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1692 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1693 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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diff
changeset
|
1694 const DicomValue* value = tags.TestAndGetValue(tag); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1695 |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1696 if (value != NULL && |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1697 !value->IsNull() && |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1698 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1699 { |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1700 target = value->GetContent(); |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1701 |
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parents:
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diff
changeset
|
1702 // Store for reuse |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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4607
diff
changeset
|
1703 index_.OverwriteMetadata(publicId, metadata, target); |
3015
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1704 return true; |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1705 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1706 else |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1707 { |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1708 // Should never happen |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1709 return false; |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1710 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1711 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1712 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1713 else |
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On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1714 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1715 // No backward |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1716 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1717 return index_.LookupMetadata(target, revision, publicId, level, metadata); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1718 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1719 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1720 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
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diff
changeset
|
1721 |
2626 | 1722 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1723 const std::string& publicId) | |
1724 { | |
1725 std::list<std::string> instances; | |
1726 GetIndex().GetChildInstances(instances, publicId); | |
1727 | |
1728 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1729 | |
1730 for (std::list<std::string>::const_iterator | |
1731 it = instances.begin(); it != instances.end(); ++it) | |
1732 { | |
1733 job.AddInstance(*it); | |
1734 } | |
1735 } | |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
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2925
diff
changeset
|
1736 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1737 |
4767d36679ed
refactoring access to Orthanc configuration
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diff
changeset
|
1738 void ServerContext::SignalUpdatedModalities() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1739 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1740 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1741 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1742 { |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
1743 GetPlugins().SignalUpdatedModalities(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1744 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1745 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1746 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1747 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1748 |
4767d36679ed
refactoring access to Orthanc configuration
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diff
changeset
|
1749 void ServerContext::SignalUpdatedPeers() |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
1750 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1751 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1752 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1753 { |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1754 GetPlugins().SignalUpdatedPeers(); |
4767d36679ed
refactoring access to Orthanc configuration
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diff
changeset
|
1755 } |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
2925
diff
changeset
|
1756 #endif |
4767d36679ed
refactoring access to Orthanc configuration
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parents:
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diff
changeset
|
1757 } |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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3640
diff
changeset
|
1758 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1759 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1760 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1761 ServerContext::CreateStorageCommitment(const std::string& jobId, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1762 const std::string& transactionUid, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1763 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1764 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1765 const std::string& remoteAet, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1766 const std::string& calledAet) |
3660
f159b731c47d
IStorageCommitmentFactory
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parents:
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diff
changeset
|
1767 { |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1768 #if ORTHANC_ENABLE_PLUGINS == 1 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1769 if (HasPlugins()) |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1770 { |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1771 return GetPlugins().CreateStorageCommitment( |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1772 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1773 } |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1774 #endif |
f159b731c47d
IStorageCommitmentFactory
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diff
changeset
|
1775 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1776 return NULL; |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1777 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1778 |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
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3839
diff
changeset
|
1779 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1780 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1781 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1782 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1783 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1784 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1785 // Use Orthanc's built-in decoder, using the cache to speed-up |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1786 // things on multi-frame images |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1787 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1788 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1789 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1790 { |
4274 | 1791 ServerContext::DicomCacheLocker locker(*this, publicId); |
4265
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|
1792 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex)); |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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1793 } |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1794 catch (OrthancException& e) |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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1795 { |
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1796 } |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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1797 |
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1798 if (decoded.get() != NULL) |
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1799 { |
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1800 return decoded.release(); |
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1801 } |
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|
1802 } |
3928
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|
1803 |
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ServerContext::DecodeDicomFrame()
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|
1804 #if ORTHANC_ENABLE_PLUGINS == 1 |
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ServerContext::DecodeDicomFrame()
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changeset
|
1805 if (HasPlugins() && |
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ServerContext::DecodeDicomFrame()
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|
1806 GetPlugins().HasCustomImageDecoder()) |
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ServerContext::DecodeDicomFrame()
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|
1807 { |
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ServerContext::DecodeDicomFrame()
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|
1808 // TODO: Store the raw buffer in the DicomCacheLocker |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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1809 std::string dicomContent; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1810 ReadDicom(dicomContent, publicId); |
4265
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|
1811 |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1812 std::unique_ptr<ImageAccessor> decoded; |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1813 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1814 { |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1815 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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|
1816 } |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
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|
1817 catch (OrthancException& e) |
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1818 { |
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1819 } |
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1820 |
3928
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ServerContext::DecodeDicomFrame()
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1821 if (decoded.get() != NULL) |
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ServerContext::DecodeDicomFrame()
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1822 { |
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ServerContext::DecodeDicomFrame()
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1823 return decoded.release(); |
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ServerContext::DecodeDicomFrame()
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1824 } |
3931
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diff
changeset
|
1825 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
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ServerContext::DecodeDicomFrame()
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|
1826 { |
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ServerContext::DecodeDicomFrame()
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1827 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
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transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
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1828 << "fallback to the built-in DCMTK decoder"; |
3928
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ServerContext::DecodeDicomFrame()
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1829 } |
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ServerContext::DecodeDicomFrame()
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1830 } |
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ServerContext::DecodeDicomFrame()
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1831 #endif |
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ServerContext::DecodeDicomFrame()
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diff
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1832 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1833 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1834 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1835 ServerContext::DicomCacheLocker locker(*this, publicId); |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1836 return locker.GetDicom().DecodeFrame(frameIndex); |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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1837 } |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1838 else |
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new configuration option: BuiltinDecoderTranscoderOrder
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|
1839 { |
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new configuration option: BuiltinDecoderTranscoderOrder
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|
1840 return NULL; // Built-in decoder is disabled |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1841 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1842 } |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1843 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1844 |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1845 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1846 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1847 { |
3931
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diff
changeset
|
1848 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1849 { |
4265
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1850 std::unique_ptr<ImageAccessor> decoded; |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1851 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1852 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
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4506
diff
changeset
|
1853 decoded.reset(dicom.DecodeFrame(frameIndex)); |
4265
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1854 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1855 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1856 { |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1857 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1858 |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1859 if (decoded.get() != NULL) |
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new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1860 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1861 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
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|
1862 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1863 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1864 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1865 #if ORTHANC_ENABLE_PLUGINS == 1 |
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ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1866 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1867 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1868 { |
4265
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1869 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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changeset
|
1870 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
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|
1871 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1872 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
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|
1873 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1874 catch (OrthancException& e) |
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Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1875 { |
f9eaf14d3d19
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|
1876 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
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diff
changeset
|
1877 |
3928
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ServerContext::DecodeDicomFrame()
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|
1878 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1879 { |
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ServerContext::DecodeDicomFrame()
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changeset
|
1880 return decoded.release(); |
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ServerContext::DecodeDicomFrame()
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diff
changeset
|
1881 } |
3931
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diff
changeset
|
1882 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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changeset
|
1883 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1884 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
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transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1885 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
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diff
changeset
|
1886 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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changeset
|
1887 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
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changeset
|
1888 #endif |
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ServerContext::DecodeDicomFrame()
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|
1889 |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1890 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1891 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
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diff
changeset
|
1892 return dicom.DecodeFrame(frameIndex); |
3931
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new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1893 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1894 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1895 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1896 return NULL; |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
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diff
changeset
|
1897 } |
3928
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ServerContext::DecodeDicomFrame()
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diff
changeset
|
1898 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1899 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1900 |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1901 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1902 size_t size, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1903 unsigned int frameIndex) |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1904 { |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
1905 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(dicom, size)); |
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
1906 return DecodeDicomFrame(*instance, frameIndex); |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1907 } |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1908 |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1909 |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1910 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1911 std::string& sopInstanceUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1912 DicomStoreUserConnection& connection, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1913 const std::string& dicom, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1914 bool hasMoveOriginator, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1915 const std::string& moveOriginatorAet, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1916 uint16_t moveOriginatorId) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1917 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1918 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1919 |
3911
0ef7f4528be2
renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3910
diff
changeset
|
1920 if (!transcodeDicomProtocol_ || |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1921 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1922 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1923 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1924 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1925 } |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1926 else |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1927 { |
4465
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
1928 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), preferredTransferSyntax_, |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
1929 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1930 } |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1931 } |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1932 |
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1933 |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1934 bool ServerContext::Transcode(DicomImage& target, |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1935 DicomImage& source /* in, "GetParsed()" possibly modified */, |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1936 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1937 bool allowNewSopInstanceUid) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1938 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1939 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1940 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
1941 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1942 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1943 return true; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1944 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1945 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1946 |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1947 #if ORTHANC_ENABLE_PLUGINS == 1 |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1948 if (HasPlugins() && |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1949 GetPlugins().HasCustomTranscoder()) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1950 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
1951 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1952 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1953 return true; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1954 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1955 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1956 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1957 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1958 << "fallback to the built-in DCMTK transcoder"; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1959 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1960 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1961 #endif |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1962 |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1963 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1964 { |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
1965 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
3944
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1966 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1967 else |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1968 { |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1969 return false; |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1970 } |
aae045f802f4
preparing simplified interface for IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3941
diff
changeset
|
1971 } |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1972 |
4376
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1973 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1974 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1975 static const std::string redactedContent = "*** POTENTIAL PHI ***"; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1976 |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1977 const DicomTag& tag = element.GetTag(); |
4376
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1978 if (deidentifyLogs_ && ( |
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1979 logsDeidentifierRules_.IsCleared(tag) || |
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1980 logsDeidentifierRules_.IsRemoved(tag) || |
b002f9abe802
review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4375
diff
changeset
|
1981 logsDeidentifierRules_.IsReplaced(tag))) |
4375
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1982 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1983 return redactedContent; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1984 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1985 else |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1986 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1987 return element.GetValue().GetContent(); |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1988 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
parents:
4274
diff
changeset
|
1989 } |
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1990 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1991 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1992 void ServerContext::GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1993 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1994 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1995 syntaxes = acceptedTransferSyntaxes_; |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1996 } |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1997 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1998 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
1999 void ServerContext::SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes) |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
2000 { |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
2001 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
2002 acceptedTransferSyntaxes_ = syntaxes; |
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2003 } |
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2004 |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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parents:
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2005 |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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parents:
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2006 bool ServerContext::IsUnknownSopClassAccepted() |
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parents:
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2007 { |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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parents:
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2008 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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2009 return isUnknownSopClassAccepted_; |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2010 } |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2011 |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2012 |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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parents:
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2013 void ServerContext::SetUnknownSopClassAccepted(bool accepted) |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2014 { |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2015 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2016 isUnknownSopClassAccepted_ = accepted; |
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new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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parents:
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2017 } |
224 | 2018 } |