Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.cpp @ 4376:b002f9abe802 varian
review of changeset 4375:208029732d51
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 17 Dec 2020 11:27:37 +0100 |
parents | 208029732d51 |
children | 7e0d015ad109 |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
224 | 35 #include "ServerContext.h" |
36 | |
4045 | 37 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h" |
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38 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h" |
4045 | 39 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h" |
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40 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h" |
4045 | 41 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" |
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42 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" |
4045 | 43 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h" |
44 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h" | |
45 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h" | |
46 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h" | |
47 #include "../../OrthancFramework/Sources/Logging.h" | |
48 #include "../../OrthancFramework/Sources/MetricsRegistry.h" | |
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49 #include "../Plugins/Engine/OrthancPlugins.h" |
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50 |
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51 #include "OrthancConfiguration.h" |
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52 #include "OrthancRestApi/OrthancRestApi.h" |
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53 #include "Search/DatabaseLookup.h" |
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54 #include "ServerJobs/OrthancJobUnserializer.h" |
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55 #include "ServerToolbox.h" |
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56 #include "StorageCommitmentReports.h" |
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57 |
794 | 58 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 59 |
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60 |
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61 |
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62 #define ENABLE_DICOM_CACHE 1 |
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63 |
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64 static const size_t DICOM_CACHE_SIZE = 2; |
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65 |
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66 /** |
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67 * IMPORTANT: We make the assumption that the same instance of |
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68 * FileStorage can be accessed from multiple threads. This seems OK |
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69 * since the filesystem implements the required locking mechanisms, |
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70 * but maybe a read-writer lock on the "FileStorage" could be |
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71 * useful. Conversely, "ServerIndex" already implements mutex-based |
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72 * locking. |
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73 **/ |
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74 |
224 | 75 namespace Orthanc |
76 { | |
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77 void ServerContext::ChangeThread(ServerContext* that, |
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78 unsigned int sleepDelay) |
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79 { |
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80 while (!that->done_) |
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81 { |
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82 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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83 |
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84 if (obj.get() != NULL) |
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85 { |
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86 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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87 |
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88 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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89 for (ServerListeners::iterator it = that->listeners_.begin(); |
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90 it != that->listeners_.end(); ++it) |
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91 { |
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92 try |
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93 { |
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94 try |
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95 { |
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96 it->GetListener().SignalChange(change); |
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97 } |
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98 catch (std::bad_alloc&) |
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99 { |
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100 LOG(ERROR) << "Not enough memory while signaling a change"; |
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101 } |
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102 catch (...) |
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103 { |
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104 throw OrthancException(ErrorCode_InternalError); |
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105 } |
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106 } |
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107 catch (OrthancException& e) |
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108 { |
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109 LOG(ERROR) << "Error in the " << it->GetDescription() |
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110 << " callback while signaling a change: " << e.What() |
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111 << " (code " << e.GetErrorCode() << ")"; |
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112 } |
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113 } |
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114 } |
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115 } |
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116 } |
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117 |
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118 |
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119 void ServerContext::SaveJobsThread(ServerContext* that, |
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120 unsigned int sleepDelay) |
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121 { |
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122 static const boost::posix_time::time_duration PERIODICITY = |
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123 boost::posix_time::seconds(10); |
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124 |
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125 boost::posix_time::ptime next = |
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126 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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127 |
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128 while (!that->done_) |
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129 { |
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130 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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131 |
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132 if (that->haveJobsChanged_ || |
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133 boost::posix_time::microsec_clock::universal_time() >= next) |
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134 { |
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135 that->haveJobsChanged_ = false; |
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136 that->SaveJobsEngine(); |
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137 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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138 } |
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139 } |
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140 } |
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141 |
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142 |
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143 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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144 { |
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145 haveJobsChanged_ = true; |
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146 mainLua_.SignalJobSubmitted(jobId); |
4129 | 147 |
148 #if ORTHANC_ENABLE_PLUGINS == 1 | |
149 if (HasPlugins()) | |
150 { | |
151 GetPlugins().SignalJobSubmitted(jobId); | |
152 } | |
153 #endif | |
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154 } |
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155 |
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156 |
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157 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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158 { |
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159 haveJobsChanged_ = true; |
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160 mainLua_.SignalJobSuccess(jobId); |
4129 | 161 |
162 #if ORTHANC_ENABLE_PLUGINS == 1 | |
163 if (HasPlugins()) | |
164 { | |
165 GetPlugins().SignalJobSuccess(jobId); | |
166 } | |
167 #endif | |
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168 } |
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169 |
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170 |
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171 void ServerContext::SignalJobFailure(const std::string& jobId) |
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172 { |
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173 haveJobsChanged_ = true; |
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174 mainLua_.SignalJobFailure(jobId); |
4129 | 175 |
176 #if ORTHANC_ENABLE_PLUGINS == 1 | |
177 if (HasPlugins()) | |
178 { | |
179 GetPlugins().SignalJobFailure(jobId); | |
180 } | |
181 #endif | |
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182 } |
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183 |
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184 |
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185 void ServerContext::SetupJobsEngine(bool unitTesting, |
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186 bool loadJobsFromDatabase) |
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187 { |
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188 if (loadJobsFromDatabase) |
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189 { |
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190 std::string serialized; |
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191 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry)) |
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192 { |
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193 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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194 |
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195 try |
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196 { |
4205 | 197 OrthancJobUnserializer unserializer(*this); |
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198 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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199 } |
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200 catch (OrthancException& e) |
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201 { |
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202 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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203 } |
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204 } |
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205 else |
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206 { |
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207 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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208 } |
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209 } |
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210 else |
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211 { |
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212 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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213 } |
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214 |
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215 jobsEngine_.GetRegistry().SetObserver(*this); |
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216 jobsEngine_.Start(); |
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217 isJobsEngineUnserialized_ = true; |
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218 |
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219 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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220 } |
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221 |
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222 |
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223 void ServerContext::SaveJobsEngine() |
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224 { |
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225 if (saveJobs_) |
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226 { |
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227 LOG(TRACE) << "Serializing the content of the jobs engine"; |
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228 |
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229 try |
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230 { |
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231 Json::Value value; |
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232 jobsEngine_.GetRegistry().Serialize(value); |
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233 |
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234 Json::FastWriter writer; |
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235 std::string serialized = writer.write(value); |
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236 |
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237 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, serialized); |
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238 } |
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239 catch (OrthancException& e) |
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240 { |
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241 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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242 } |
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243 } |
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244 } |
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245 |
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246 |
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247 ServerContext::ServerContext(IDatabaseWrapper& database, |
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248 IStorageArea& area, |
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249 bool unitTesting, |
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250 size_t maxCompletedJobs) : |
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251 index_(*this, database, (unitTesting ? 20 : 500)), |
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252 area_(area), |
656 | 253 compressionEnabled_(false), |
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254 storeMD5_(true), |
285
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255 provider_(*this), |
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256 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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257 mainLua_(*this), |
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258 filterLua_(*this), |
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259 luaListener_(*this), |
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260 jobsEngine_(maxCompletedJobs), |
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261 #if ORTHANC_ENABLE_PLUGINS == 1 |
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262 plugins_(NULL), |
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263 #endif |
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264 done_(false), |
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265 haveJobsChanged_(false), |
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266 isJobsEngineUnserialized_(false), |
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267 metricsRegistry_(new MetricsRegistry), |
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268 isHttpServerSecure_(true), |
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moving SetOverwriteInstances from ServerIndex to ServerContext
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269 isExecuteLuaEnabled_(false), |
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270 overwriteInstances_(false), |
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271 dcmtkTranscoder_(new DcmtkTranscoder), |
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272 isIngestTranscoding_(false), |
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273 deidentifyLogs_(false) |
224 | 274 { |
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275 try |
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276 { |
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277 unsigned int lossyQuality; |
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278 |
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279 { |
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280 OrthancConfiguration::ReaderLock lock; |
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281 |
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282 queryRetrieveArchive_.reset( |
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283 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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284 mediaArchive_.reset( |
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285 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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286 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET(); |
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287 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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288 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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289 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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290 |
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291 // New configuration options in Orthanc 1.5.1 |
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292 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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293 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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294 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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295 |
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296 // New configuration option in Orthanc 1.6.0 |
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297 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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298 |
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299 // New options in Orthanc 1.7.0 |
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300 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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301 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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302 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
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303 |
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304 std::string s; |
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305 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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306 { |
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307 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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308 { |
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309 isIngestTranscoding_ = true; |
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310 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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311 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
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312 } |
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313 else |
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314 { |
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315 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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316 "Unknown transfer syntax for ingest transcoding: " + s); |
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317 } |
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318 } |
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319 else |
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320 { |
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321 isIngestTranscoding_ = false; |
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322 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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323 } |
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324 |
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325 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true)) |
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326 { |
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327 deidentifyLogs_ = true; |
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328 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled"; |
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329 |
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330 DicomVersion version = StringToDicomVersion( |
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331 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2017c")); |
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332 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is " |
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333 << EnumerationToString(version); |
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334 |
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335 logsDeidentifierRules_.SetupAnonymization(version); |
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336 } |
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337 else |
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338 { |
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339 deidentifyLogs_ = false; |
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340 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled"; |
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341 } |
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342 } |
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343 |
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344 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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345 |
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346 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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347 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
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348 |
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349 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
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350 } |
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351 catch (OrthancException&) |
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352 { |
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353 Stop(); |
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354 throw; |
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355 } |
224 | 356 } |
357 | |
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358 |
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359 |
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360 ServerContext::~ServerContext() |
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361 { |
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362 if (!done_) |
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363 { |
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364 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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365 Stop(); |
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366 } |
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367 } |
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368 |
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369 |
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370 void ServerContext::Stop() |
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371 { |
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372 if (!done_) |
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373 { |
1459 | 374 { |
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375 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 376 listeners_.clear(); |
377 } | |
378 | |
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379 done_ = true; |
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380 |
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381 if (changeThread_.joinable()) |
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382 { |
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383 changeThread_.join(); |
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384 } |
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385 |
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386 if (saveJobsThread_.joinable()) |
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387 { |
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388 saveJobsThread_.join(); |
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389 } |
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390 |
4024
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391 jobsEngine_.GetRegistry().ResetObserver(); |
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392 |
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393 if (isJobsEngineUnserialized_) |
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394 { |
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395 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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396 SaveJobsEngine(); |
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397 } |
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398 |
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399 // Do not change the order below! |
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400 jobsEngine_.Stop(); |
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401 index_.Stop(); |
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402 } |
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403 } |
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404 |
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405 |
236 | 406 void ServerContext::SetCompressionEnabled(bool enabled) |
407 { | |
408 if (enabled) | |
409 LOG(WARNING) << "Disk compression is enabled"; | |
410 else | |
411 LOG(WARNING) << "Disk compression is disabled"; | |
412 | |
413 compressionEnabled_ = enabled; | |
414 } | |
415 | |
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416 |
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417 void ServerContext::RemoveFile(const std::string& fileUuid, |
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418 FileContentType type) |
227
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419 { |
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420 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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421 accessor.Remove(fileUuid, type); |
227
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422 } |
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423 |
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424 |
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425 StoreStatus ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
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426 DicomInstanceToStore& dicom, |
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427 StoreInstanceMode mode) |
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428 { |
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429 bool overwrite; |
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430 switch (mode) |
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431 { |
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432 case StoreInstanceMode_Default: |
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433 overwrite = overwriteInstances_; |
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434 break; |
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435 |
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436 case StoreInstanceMode_OverwriteDuplicate: |
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437 overwrite = true; |
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438 break; |
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439 |
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440 case StoreInstanceMode_IgnoreDuplicate: |
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441 overwrite = false; |
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442 break; |
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443 |
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444 default: |
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445 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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446 } |
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447 |
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448 try |
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449 { |
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450 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
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451 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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452 |
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453 resultPublicId = dicom.GetHasher().HashInstance(); |
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454 |
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455 Json::Value simplifiedTags; |
4055
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456 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicom.GetJson(), DicomToJsonFormat_Human); |
1004
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457 |
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458 // Test if the instance must be filtered out |
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459 bool accepted = true; |
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460 |
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461 { |
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462 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
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463 |
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464 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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465 { |
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466 try |
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467 { |
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468 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
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469 { |
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470 accepted = false; |
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471 break; |
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472 } |
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473 } |
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474 catch (OrthancException& e) |
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475 { |
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|
476 LOG(ERROR) << "Error in the " << it->GetDescription() |
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477 << " callback while receiving an instance: " << e.What() |
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478 << " (code " << e.GetErrorCode() << ")"; |
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479 throw; |
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480 } |
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481 } |
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482 } |
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483 |
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484 if (!accepted) |
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485 { |
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486 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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487 return StoreStatus_FilteredOut; |
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488 } |
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489 |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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490 { |
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491 // Remove the file from the DicomCache (useful if |
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492 // "OverwriteInstances" is set to "true") |
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493 boost::mutex::scoped_lock lock(dicomCacheMutex_); |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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494 dicomCache_.Invalidate(resultPublicId); |
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495 } |
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New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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|
496 |
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497 // TODO Should we use "gzip" instead? |
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|
498 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
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|
499 |
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500 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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|
501 FileContentType_Dicom, compression, storeMD5_); |
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502 FileInfo jsonInfo = accessor.Write(dicom.GetJson().toStyledString(), |
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|
503 FileContentType_DicomAsJson, compression, storeMD5_); |
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|
504 |
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DicomInstanceToStore
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|
505 ServerIndex::Attachments attachments; |
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DicomInstanceToStore
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|
506 attachments.push_back(dicomInfo); |
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|
507 attachments.push_back(jsonInfo); |
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DicomInstanceToStore
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diff
changeset
|
508 |
1067
ace99e272203
access metadata in plugins
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diff
changeset
|
509 typedef std::map<MetadataType, std::string> InstanceMetadata; |
ace99e272203
access metadata in plugins
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|
510 InstanceMetadata instanceMetadata; |
3813
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moving SetOverwriteInstances from ServerIndex to ServerContext
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diff
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|
511 StoreStatus status = index_.Store( |
3814
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
512 instanceMetadata, dicom, attachments, overwrite); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
513 |
1433
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refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
514 // Only keep the metadata for the "instance" level |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
515 dicom.GetMetadata().clear(); |
ace99e272203
access metadata in plugins
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diff
changeset
|
516 |
ace99e272203
access metadata in plugins
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diff
changeset
|
517 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 518 it != instanceMetadata.end(); ++it) |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
519 { |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
520 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
521 it->second)); |
ace99e272203
access metadata in plugins
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diff
changeset
|
522 } |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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1066
diff
changeset
|
523 |
1004
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
524 if (status != StoreStatus_Success) |
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DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
525 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
526 accessor.Remove(dicomInfo); |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
527 accessor.Remove(jsonInfo); |
1004
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
528 } |
a226e0959d8b
DicomInstanceToStore
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diff
changeset
|
529 |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
530 switch (status) |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
531 { |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
532 case StoreStatus_Success: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
533 LOG(INFO) << "New instance stored"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
534 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
535 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
536 case StoreStatus_AlreadyStored: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
537 LOG(INFO) << "Already stored"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
538 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
539 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
540 case StoreStatus_Failure: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
541 LOG(ERROR) << "Store failure"; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
542 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
543 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
544 default: |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
545 // This should never happen |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
546 break; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
547 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
548 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
549 if (status == StoreStatus_Success || |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
550 status == StoreStatus_AlreadyStored) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
551 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
552 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
553 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
554 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
555 { |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
556 try |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
557 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
558 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
559 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
560 catch (OrthancException& e) |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
561 { |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
562 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
563 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
564 << " (code " << e.GetErrorCode() << ")"; |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
565 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
566 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
567 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
568 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
569 return status; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
570 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
571 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
572 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
573 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
574 { |
2380
96b3ec054b69
reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2304
diff
changeset
|
575 dicom.GetSummary().LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
576 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
577 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
578 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
579 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
580 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
581 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
582 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
583 StoreStatus ServerContext::Store(std::string& resultPublicId, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
584 DicomInstanceToStore& dicom, |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
585 StoreInstanceMode mode) |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
586 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
587 if (!isIngestTranscoding_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
588 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
589 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
590 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
591 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
592 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
593 { |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
594 // Automated transcoding of incoming DICOM files |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
595 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
596 DicomTransferSyntax sourceSyntax; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
597 if (!FromDcmtkBridge::LookupOrthancTransferSyntax( |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
598 sourceSyntax, dicom.GetParsedDicomFile().GetDcmtkObject()) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
599 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
600 { |
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prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
601 // No transcoding |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
602 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
603 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
3911
diff
changeset
|
604 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
605 { |
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prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
606 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
607 syntaxes.insert(ingestTransferSyntax_); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
608 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
609 IDicomTranscoder::DicomImage source; |
0b3256c3ee14
simplified IDicomTranscoder
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3944
diff
changeset
|
610 source.SetExternalBuffer(dicom.GetBufferData(), dicom.GetBufferSize()); |
0b3256c3ee14
simplified IDicomTranscoder
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diff
changeset
|
611 |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
612 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
613 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
614 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
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parents:
3944
diff
changeset
|
615 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
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diff
changeset
|
616 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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diff
changeset
|
617 DicomInstanceToStore toStore; |
7610af1532c3
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diff
changeset
|
618 toStore.SetParsedDicomFile(*tmp); |
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diff
changeset
|
619 toStore.SetOrigin(dicom.GetOrigin()); |
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diff
changeset
|
620 |
7610af1532c3
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parents:
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diff
changeset
|
621 StoreStatus ok = StoreAfterTranscoding(resultPublicId, toStore, mode); |
3938 | 622 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
623 | |
3912
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diff
changeset
|
624 return ok; |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
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parents:
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diff
changeset
|
625 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
626 else |
0b3256c3ee14
simplified IDicomTranscoder
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parents:
3944
diff
changeset
|
627 { |
0b3256c3ee14
simplified IDicomTranscoder
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parents:
3944
diff
changeset
|
628 // Cannot transcode => store the original file |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
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629 return StoreAfterTranscoding(resultPublicId, dicom, mode); |
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simplified IDicomTranscoder
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630 } |
3912
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prototyping automated transcoding of incoming DICOM files
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631 } |
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prototyping automated transcoding of incoming DICOM files
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632 } |
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prototyping automated transcoding of incoming DICOM files
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633 } |
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prototyping automated transcoding of incoming DICOM files
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634 |
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prototyping automated transcoding of incoming DICOM files
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|
635 |
1146
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636 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
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637 const std::string& resourceId, |
1146
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optimization for access to attachments
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638 FileContentType content) |
226
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639 { |
232
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refactoring of attachments
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640 FileInfo attachment; |
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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641 if (!index_.LookupAttachment(attachment, resourceId, content)) |
232
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refactoring of attachments
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642 { |
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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643 throw OrthancException(ErrorCode_UnknownResource); |
236 | 644 } |
226
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refactoring to read files
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645 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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|
646 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1772
53e045b5a8ec
MIME content type can be associated to custom attachments (cf. "UserContentType")
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diff
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647 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
226
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refactoring to read files
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diff
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648 } |
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refactoring to read files
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diff
changeset
|
649 |
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refactoring to read files
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650 |
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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651 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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652 FileContentType attachmentType, |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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653 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
654 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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655 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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656 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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657 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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658 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
659 |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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660 FileInfo attachment; |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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661 if (!index_.LookupAttachment(attachment, resourceId, attachmentType)) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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662 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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663 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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664 } |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
665 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
666 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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changeset
|
667 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
668 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
669 return; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
670 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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changeset
|
671 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
672 std::string content; |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
673 |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
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|
674 StorageAccessor accessor(area_, GetMetricsRegistry()); |
1700
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
675 accessor.Read(content, attachment); |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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changeset
|
676 |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
677 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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678 content.size(), attachmentType, compression, storeMD5_); |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
679 |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
680 try |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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changeset
|
681 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
682 StoreStatus status = index_.AddAttachment(modified, resourceId); |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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683 if (status != StoreStatus_Success) |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
684 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
685 accessor.Remove(modified); |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
686 throw OrthancException(ErrorCode_Database); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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changeset
|
687 } |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
688 } |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
689 catch (OrthancException&) |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
690 { |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
691 accessor.Remove(modified); |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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|
692 throw; |
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New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
693 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
694 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
695 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
696 |
2409
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ignore-length argument if retrieving DICOM tags
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697 void ServerContext::ReadDicomAsJsonInternal(std::string& result, |
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ignore-length argument if retrieving DICOM tags
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|
698 const std::string& instancePublicId) |
2127 | 699 { |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
700 FileInfo attachment; |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
701 if (index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomAsJson)) |
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
702 { |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
703 ReadAttachment(result, attachment); |
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
704 } |
2409
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ignore-length argument if retrieving DICOM tags
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|
705 else |
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changeset
|
706 { |
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|
707 // The "DICOM as JSON" summary is not available from the Orthanc |
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ignore-length argument if retrieving DICOM tags
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|
708 // store (most probably deleted), reconstruct it from the DICOM file |
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|
709 std::string dicom; |
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|
710 ReadDicom(dicom, instancePublicId); |
2128
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|
711 |
2409
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ignore-length argument if retrieving DICOM tags
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712 LOG(INFO) << "Reconstructing the missing DICOM-as-JSON summary for instance: " |
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ignore-length argument if retrieving DICOM tags
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|
713 << instancePublicId; |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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changeset
|
714 |
2409
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ignore-length argument if retrieving DICOM tags
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|
715 ParsedDicomFile parsed(dicom); |
2128
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|
716 |
2409
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ignore-length argument if retrieving DICOM tags
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|
717 Json::Value summary; |
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
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diff
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|
718 OrthancConfiguration::DefaultDicomDatasetToJson(summary, parsed); |
2409
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ignore-length argument if retrieving DICOM tags
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|
719 |
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ignore-length argument if retrieving DICOM tags
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|
720 result = summary.toStyledString(); |
2128
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|
721 |
2409
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ignore-length argument if retrieving DICOM tags
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722 if (!AddAttachment(instancePublicId, FileContentType_DicomAsJson, |
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ignore-length argument if retrieving DICOM tags
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|
723 result.c_str(), result.size())) |
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ignore-length argument if retrieving DICOM tags
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|
724 { |
2956 | 725 throw OrthancException(ErrorCode_InternalError, |
726 "Cannot associate the DICOM-as-JSON summary to instance: " + instancePublicId); | |
2409
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|
727 } |
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ignore-length argument if retrieving DICOM tags
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changeset
|
728 } |
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ignore-length argument if retrieving DICOM tags
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changeset
|
729 } |
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changeset
|
730 |
2128
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Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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|
731 |
2409
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ignore-length argument if retrieving DICOM tags
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changeset
|
732 void ServerContext::ReadDicomAsJson(std::string& result, |
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|
733 const std::string& instancePublicId, |
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ignore-length argument if retrieving DICOM tags
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|
734 const std::set<DicomTag>& ignoreTagLength) |
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ignore-length argument if retrieving DICOM tags
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735 { |
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736 if (ignoreTagLength.empty()) |
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737 { |
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738 ReadDicomAsJsonInternal(result, instancePublicId); |
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739 } |
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740 else |
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741 { |
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742 Json::Value tmp; |
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743 ReadDicomAsJson(tmp, instancePublicId, ignoreTagLength); |
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744 result = tmp.toStyledString(); |
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745 } |
2127 | 746 } |
747 | |
748 | |
2124 | 749 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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750 const std::string& instancePublicId, |
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751 const std::set<DicomTag>& ignoreTagLength) |
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752 { |
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753 if (ignoreTagLength.empty()) |
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754 { |
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755 std::string tmp; |
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756 ReadDicomAsJsonInternal(tmp, instancePublicId); |
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757 |
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758 Json::Reader reader; |
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759 if (!reader.parse(tmp, result)) |
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760 { |
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761 throw OrthancException(ErrorCode_CorruptedFile); |
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762 } |
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763 } |
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764 else |
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765 { |
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766 // The "DicomAsJson" attachment might have stored some tags as |
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767 // "too long". We are forced to re-parse the DICOM file. |
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768 std::string dicom; |
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769 ReadDicom(dicom, instancePublicId); |
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770 |
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771 ParsedDicomFile parsed(dicom); |
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772 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
226
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773 } |
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774 } |
227
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775 |
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776 |
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777 void ServerContext::ReadAttachment(std::string& result, |
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778 const std::string& instancePublicId, |
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779 FileContentType content, |
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780 bool uncompressIfNeeded) |
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781 { |
232
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782 FileInfo attachment; |
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783 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
227
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784 { |
2956 | 785 throw OrthancException(ErrorCode_InternalError, |
786 "Unable to read attachment " + EnumerationToString(content) + | |
787 " of instance " + instancePublicId); | |
227
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788 } |
1550 | 789 |
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790 assert(attachment.GetContentType() == content); |
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791 |
1550 | 792 if (uncompressIfNeeded) |
793 { | |
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794 ReadAttachment(result, attachment); |
1550 | 795 } |
796 else | |
797 { | |
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798 // Do not uncompress the content of the storage area, return the |
1550 | 799 // raw data |
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800 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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801 accessor.ReadRaw(result, attachment); |
1550 | 802 } |
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803 } |
285
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804 |
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805 |
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806 void ServerContext::ReadAttachment(std::string& result, |
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807 const FileInfo& attachment) |
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808 { |
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809 // This will decompress the attachment |
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810 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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811 accessor.Read(result, attachment); |
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812 } |
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813 |
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814 |
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815 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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816 { |
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817 std::string content; |
2124 | 818 context_.ReadDicom(content, instancePublicId); |
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819 return new ParsedDicomFile(content); |
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820 } |
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821 |
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822 |
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823 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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824 const std::string& instancePublicId) : |
1129
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825 that_(that), |
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826 lock_(that_.dicomCacheMutex_) |
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827 { |
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828 #if ENABLE_DICOM_CACHE == 0 |
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829 static std::unique_ptr<IDynamicObject> p; |
3836 | 830 p.reset(that_.provider_.Provide(instancePublicId)); |
778
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831 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
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832 #else |
778
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833 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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834 #endif |
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835 } |
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836 |
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837 |
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838 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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839 { |
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840 } |
304 | 841 |
842 | |
695
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843 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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844 { |
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845 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
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846 storeMD5_ = storeMD5; |
695
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847 } |
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848 |
699
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849 |
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850 bool ServerContext::AddAttachment(const std::string& resourceId, |
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851 FileContentType attachmentType, |
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852 const void* data, |
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853 size_t size) |
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854 { |
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855 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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856 |
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857 // TODO Should we use "gzip" instead? |
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858 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
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859 |
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860 StorageAccessor accessor(area_, GetMetricsRegistry()); |
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e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
861 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
862 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
863 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
864 if (status != StoreStatus_Success) |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
865 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
866 accessor.Remove(attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
867 return false; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
868 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
869 else |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
870 { |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
871 return true; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
872 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
873 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
874 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
875 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
876 bool ServerContext::DeleteResource(Json::Value& target, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
877 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
878 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
879 { |
2507 | 880 if (expectedType == ResourceType_Instance) |
881 { | |
882 // remove the file from the DicomCache | |
883 boost::mutex::scoped_lock lock(dicomCacheMutex_); | |
884 dicomCache_.Invalidate(uuid); | |
885 } | |
886 | |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
887 return index_.DeleteResource(target, uuid, expectedType); |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
888 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
889 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
890 |
1198 | 891 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
892 { |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
893 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
894 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
895 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
896 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
897 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
898 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
899 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
900 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 901 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
902 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
903 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
904 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
905 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
906 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
907 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
908 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
909 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
910 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
911 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
912 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
913 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 914 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
915 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
916 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
917 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
918 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
919 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
920 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
921 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
922 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
923 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
924 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
925 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
926 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
927 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
928 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
929 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
930 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
931 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
932 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
933 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
934 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
935 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
936 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
937 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
938 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
939 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
940 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
941 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
942 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
943 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
944 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
945 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
946 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
947 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
948 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
949 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
950 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
951 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
952 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
953 return (plugins_ != NULL); |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
954 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
955 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
956 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
957 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
958 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
959 |
4196
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
960 void ServerContext::ApplyInternal(ILookupVisitor& visitor, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
961 const DatabaseLookup& lookup, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
962 ResourceType queryLevel, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
963 size_t since, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
964 size_t limit) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
965 { |
3679
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
966 unsigned int databaseLimit = (queryLevel == ResourceType_Instance ? |
6358923d3ced
C-FIND: forbid wildcard matching on some VRs, ignore main tags below the queried level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3677
diff
changeset
|
967 limitFindInstances_ : limitFindResults_); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
968 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
969 std::vector<std::string> resources, instances; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
970 |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
971 { |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
972 const size_t lookupLimit = (databaseLimit == 0 ? 0 : databaseLimit + 1); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
973 GetIndex().ApplyLookupResources(resources, &instances, lookup, queryLevel, lookupLimit); |
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
974 } |
3025
039a9d262d64
preparing to speed up find in databases
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3021
diff
changeset
|
975 |
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3031
diff
changeset
|
976 bool complete = (databaseLimit == 0 || |
3204
8792867b739a
fix incorrect "too many results"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3175
diff
changeset
|
977 resources.size() <= databaseLimit); |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
978 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3003
diff
changeset
|
979 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
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980 |
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981 /** |
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982 * "resources" contains the Orthanc ID of the resource at level |
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983 * "queryLevel", "instances" contains one the Orthanc ID of one |
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984 * sample instance from this resource. |
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985 **/ |
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986 assert(resources.size() == instances.size()); |
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987 |
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988 size_t countResults = 0; |
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989 size_t skipped = 0; |
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990 |
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991 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
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992 |
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993 for (size_t i = 0; i < instances.size(); i++) |
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994 { |
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995 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
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996 // the disk if only "main DICOM tags" are to be returned |
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997 |
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998 std::unique_ptr<Json::Value> dicomAsJson; |
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999 |
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1000 bool hasOnlyMainDicomTags; |
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1001 DicomMap dicom; |
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1002 |
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1003 if (findStorageAccessMode_ == FindStorageAccessMode_DatabaseOnly || |
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1004 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer || |
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1005 lookup.HasOnlyMainDicomTags()) |
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1006 { |
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1007 // Case (1): The main DICOM tags, as stored in the database, |
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1008 // are sufficient to look for match |
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1009 |
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1010 DicomMap tmp; |
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1011 if (!GetIndex().GetAllMainDicomTags(tmp, instances[i])) |
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1012 { |
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1013 // The instance has been removed during the execution of the |
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1014 // lookup, ignore it |
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1015 continue; |
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1016 } |
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1017 |
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1018 // New in Orthanc 1.6.0: Only keep the main DICOM tags at the |
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1019 // level of interest for the query |
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1020 switch (queryLevel) |
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1021 { |
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1022 // WARNING: Don't reorder cases below, and don't add "break" |
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1023 case ResourceType_Instance: |
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1024 dicom.MergeMainDicomTags(tmp, ResourceType_Instance); |
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1025 |
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1026 case ResourceType_Series: |
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1027 dicom.MergeMainDicomTags(tmp, ResourceType_Series); |
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1028 |
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1029 case ResourceType_Study: |
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1030 dicom.MergeMainDicomTags(tmp, ResourceType_Study); |
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1031 |
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1032 case ResourceType_Patient: |
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1033 dicom.MergeMainDicomTags(tmp, ResourceType_Patient); |
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1034 break; |
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1035 |
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1036 default: |
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1037 throw OrthancException(ErrorCode_InternalError); |
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1038 } |
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1039 |
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1040 hasOnlyMainDicomTags = true; |
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1041 } |
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1042 else |
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1043 { |
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1044 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
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1045 // the storage area |
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1046 dicomAsJson.reset(new Json::Value); |
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1047 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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1048 |
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1049 dicom.FromDicomAsJson(*dicomAsJson); |
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1050 |
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1051 // This map contains the entire JSON, i.e. more than the main DICOM tags |
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1052 hasOnlyMainDicomTags = false; |
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1053 } |
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1054 |
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1055 if (lookup.IsMatch(dicom)) |
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1056 { |
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1057 if (skipped < since) |
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1058 { |
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1059 skipped++; |
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1060 } |
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1061 else if (limit != 0 && |
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1062 countResults >= limit) |
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1063 { |
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1064 // Too many results, don't mark as complete |
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1065 complete = false; |
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1066 break; |
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1067 } |
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1068 else |
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1069 { |
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1070 if ((findStorageAccessMode_ == FindStorageAccessMode_DiskOnLookupAndAnswer || |
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1071 findStorageAccessMode_ == FindStorageAccessMode_DiskOnAnswer) && |
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1072 dicomAsJson.get() == NULL && |
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1073 isDicomAsJsonNeeded) |
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1074 { |
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1075 dicomAsJson.reset(new Json::Value); |
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1076 ReadDicomAsJson(*dicomAsJson, instances[i]); |
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1077 } |
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1078 |
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1079 if (hasOnlyMainDicomTags) |
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1080 { |
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1081 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
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1082 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
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1083 } |
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1084 else |
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1085 { |
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1086 // Remove the non-main DICOM tags from "dicom" if Case (2) |
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1087 // was used, for consistency with Case (1) |
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1088 |
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1089 DicomMap mainDicomTags; |
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1090 mainDicomTags.ExtractMainDicomTags(dicom); |
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1091 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
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1092 } |
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1093 |
3001
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1094 countResults ++; |
1757
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1095 } |
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1096 } |
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1097 } |
3001
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1098 |
3003
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1099 if (complete) |
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1100 { |
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1101 visitor.MarkAsComplete(); |
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1102 } |
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1103 |
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1104 LOG(INFO) << "Number of matching resources: " << countResults; |
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1105 } |
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1106 |
2626 | 1107 |
4196
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1108 |
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1109 namespace |
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1110 { |
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1111 class ModalitiesInStudyVisitor : public ServerContext::ILookupVisitor |
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1112 { |
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1113 private: |
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1114 class Study : public boost::noncopyable |
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1115 { |
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1116 private: |
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1117 std::string orthancId_; |
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1118 std::string instanceId_; |
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1119 DicomMap mainDicomTags_; |
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1120 Json::Value dicomAsJson_; |
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1121 std::set<std::string> modalitiesInStudy_; |
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1122 |
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1123 public: |
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1124 Study(const std::string& instanceId, |
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1125 const DicomMap& seriesTags) : |
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1126 instanceId_(instanceId), |
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1127 dicomAsJson_(Json::nullValue) |
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1128 { |
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1129 { |
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1130 DicomMap tmp; |
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1131 tmp.Assign(seriesTags); |
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1132 tmp.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "dummy", false); |
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1133 DicomInstanceHasher hasher(tmp); |
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1134 orthancId_ = hasher.HashStudy(); |
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1135 } |
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1136 |
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1137 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Study); |
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1138 mainDicomTags_.MergeMainDicomTags(seriesTags, ResourceType_Patient); |
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1139 AddModality(seriesTags); |
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1140 } |
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1141 |
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1142 void AddModality(const DicomMap& seriesTags) |
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1143 { |
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1144 std::string modality; |
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1145 if (seriesTags.LookupStringValue(modality, DICOM_TAG_MODALITY, false) && |
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1146 !modality.empty()) |
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1147 { |
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1148 modalitiesInStudy_.insert(modality); |
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1149 } |
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1150 } |
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1151 |
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1152 void SetDicomAsJson(const Json::Value& dicomAsJson) |
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1153 { |
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1154 dicomAsJson_ = dicomAsJson; |
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1155 } |
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1156 |
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1157 const std::string& GetOrthancId() const |
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1158 { |
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1159 return orthancId_; |
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1160 } |
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1161 |
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1162 const std::string& GetInstanceId() const |
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1163 { |
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1164 return instanceId_; |
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1165 } |
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1166 |
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1167 const DicomMap& GetMainDicomTags() const |
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1168 { |
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1169 return mainDicomTags_; |
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1170 } |
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1171 |
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1172 const Json::Value* GetDicomAsJson() const |
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1173 { |
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1174 if (dicomAsJson_.type() == Json::nullValue) |
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1175 { |
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1176 return NULL; |
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1177 } |
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1178 else |
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1179 { |
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1180 return &dicomAsJson_; |
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1181 } |
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1182 } |
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1183 }; |
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1184 |
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1185 typedef std::map<std::string, Study*> Studies; |
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1186 |
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1187 bool isDicomAsJsonNeeded_; |
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1188 bool complete_; |
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1189 Studies studies_; |
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1190 |
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1191 public: |
4205 | 1192 explicit ModalitiesInStudyVisitor(bool isDicomAsJsonNeeded) : |
1193 isDicomAsJsonNeeded_(isDicomAsJsonNeeded), | |
1194 complete_(false) | |
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1195 { |
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1196 } |
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1197 |
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1198 ~ModalitiesInStudyVisitor() |
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1199 { |
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1200 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it) |
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1201 { |
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1202 assert(it->second != NULL); |
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1203 delete it->second; |
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1204 } |
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1205 |
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1206 studies_.clear(); |
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1207 } |
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1208 |
4205 | 1209 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
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1210 { |
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1211 return isDicomAsJsonNeeded_; |
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1212 } |
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1213 |
4205 | 1214 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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1215 { |
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1216 complete_ = true; |
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1217 } |
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1218 |
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1219 virtual void Visit(const std::string& publicId, |
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1220 const std::string& instanceId, |
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1221 const DicomMap& seriesTags, |
4205 | 1222 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE |
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1223 { |
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1224 std::string studyInstanceUid; |
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1225 if (seriesTags.LookupStringValue(studyInstanceUid, DICOM_TAG_STUDY_INSTANCE_UID, false)) |
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1226 { |
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1227 Studies::iterator found = studies_.find(studyInstanceUid); |
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1228 if (found == studies_.end()) |
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1229 { |
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1230 // New study |
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1231 std::unique_ptr<Study> study(new Study(instanceId, seriesTags)); |
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1232 |
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1233 if (dicomAsJson != NULL) |
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1234 { |
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1235 study->SetDicomAsJson(*dicomAsJson); |
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1236 } |
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1237 |
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1238 studies_[studyInstanceUid] = study.release(); |
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1239 } |
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1240 else |
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1241 { |
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1242 // Already existing study |
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1243 found->second->AddModality(seriesTags); |
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1244 } |
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1245 } |
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1246 } |
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1247 |
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1248 void Forward(ILookupVisitor& callerVisitor, |
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1249 size_t since, |
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1250 size_t limit) const |
4205 | 1251 { |
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1252 size_t index = 0; |
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1253 size_t countForwarded = 0; |
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1254 |
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1255 for (Studies::const_iterator it = studies_.begin(); it != studies_.end(); ++it, index++) |
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1256 { |
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1257 if (limit == 0 || |
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1258 (index >= since && |
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1259 index < limit)) |
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1260 { |
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1261 assert(it->second != NULL); |
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1262 const Study& study = *it->second; |
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1263 |
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1264 countForwarded++; |
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1265 callerVisitor.Visit(study.GetOrthancId(), study.GetInstanceId(), |
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1266 study.GetMainDicomTags(), study.GetDicomAsJson()); |
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1267 } |
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1268 } |
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1269 |
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1270 if (countForwarded == studies_.size()) |
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1271 { |
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1272 callerVisitor.MarkAsComplete(); |
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1273 } |
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1274 } |
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1275 }; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1276 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1277 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1278 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1279 void ServerContext::Apply(ILookupVisitor& visitor, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1280 const DatabaseLookup& lookup, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1281 ResourceType queryLevel, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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1282 size_t since, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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1283 size_t limit) |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1284 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1285 if (queryLevel == ResourceType_Study && |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1286 lookup.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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|
1287 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1288 // Convert the study-level query, into a series-level query, |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1289 // where "ModalitiesInStudy" is replaced by "Modality" |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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1290 DatabaseLookup seriesLookup; |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1291 |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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1292 for (size_t i = 0; i < lookup.GetConstraintsCount(); i++) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1293 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1294 const DicomTagConstraint& constraint = lookup.GetConstraint(i); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1295 if (constraint.GetTag() == DICOM_TAG_MODALITIES_IN_STUDY) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1296 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1297 if ((constraint.GetConstraintType() == ConstraintType_Equal && constraint.GetValue().empty()) || |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
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diff
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|
1298 (constraint.GetConstraintType() == ConstraintType_List && constraint.GetValues().empty())) |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1299 { |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1300 // Ignore universal lookup on "ModalitiesInStudy" (0008,0061), |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1301 // this should have been handled by the caller |
4218
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4205
diff
changeset
|
1302 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
8e069a7e1c11
validation against orthanc-tests
Sebastien Jodogne <s.jodogne@gmail.com>
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4205
diff
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|
1303 return; |
4196
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1304 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1305 else |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1306 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1307 DicomTagConstraint modality(constraint); |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1308 modality.SetTag(DICOM_TAG_MODALITY); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1309 seriesLookup.AddConstraint(modality); |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1310 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1311 } |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1312 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1313 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1314 seriesLookup.AddConstraint(constraint); |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1315 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1316 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1317 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1318 ModalitiesInStudyVisitor seriesVisitor(visitor.IsDicomAsJsonNeeded()); |
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Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1319 ApplyInternal(seriesVisitor, seriesLookup, ResourceType_Series, 0, 0); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1320 seriesVisitor.Forward(visitor, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1321 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1322 else |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1323 { |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4143
diff
changeset
|
1324 ApplyInternal(visitor, lookup, queryLevel, since, limit); |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1325 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1326 } |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1327 |
37310bb1cd30
Fix handling of "ModalitiesInStudy" (0008,0061) in C-FIND and "/tools/find"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1328 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1329 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1330 const std::string& publicId, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1331 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1332 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1333 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1334 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1335 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1336 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1337 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1338 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1339 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1340 if (index_.LookupMetadata(target, publicId, metadata)) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1341 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1342 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1343 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1344 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1345 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1346 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1347 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1348 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1349 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1350 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1351 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1352 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1353 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1354 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1355 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1356 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1357 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1358 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1359 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1360 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1361 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1362 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1363 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1364 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1365 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1366 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1367 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1368 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1369 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1370 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1371 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1372 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1373 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1374 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1375 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1376 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1377 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1378 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1379 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1380 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1381 // Store for reuse |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1382 index_.SetMetadata(publicId, metadata, target); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1383 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1384 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1385 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1386 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1387 // Should never happen |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1388 return false; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1389 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1390 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1391 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1392 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1393 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1394 // No backward |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1395 return index_.LookupMetadata(target, publicId, metadata); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1396 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1397 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1398 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1399 |
2626 | 1400 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1401 const std::string& publicId) | |
1402 { | |
1403 std::list<std::string> instances; | |
1404 GetIndex().GetChildInstances(instances, publicId); | |
1405 | |
1406 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1407 | |
1408 for (std::list<std::string>::const_iterator | |
1409 it = instances.begin(); it != instances.end(); ++it) | |
1410 { | |
1411 job.AddInstance(*it); | |
1412 } | |
1413 } | |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1414 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1415 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1416 void ServerContext::SignalUpdatedModalities() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1417 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1418 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1419 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1420 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1421 GetPlugins().SignalUpdatedModalities(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1422 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1423 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1424 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1425 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1426 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1427 void ServerContext::SignalUpdatedPeers() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1428 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1429 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1430 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1431 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1432 GetPlugins().SignalUpdatedPeers(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1433 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1434 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1435 } |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1436 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1437 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1438 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1439 ServerContext::CreateStorageCommitment(const std::string& jobId, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1440 const std::string& transactionUid, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1441 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1442 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1443 const std::string& remoteAet, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1444 const std::string& calledAet) |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1445 { |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1446 #if ORTHANC_ENABLE_PLUGINS == 1 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1447 if (HasPlugins()) |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1448 { |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1449 return GetPlugins().CreateStorageCommitment( |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1450 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1451 } |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1452 #endif |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1453 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1454 return NULL; |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1455 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1456 |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1457 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1458 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1459 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1460 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1461 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1462 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1463 // Use Orthanc's built-in decoder, using the cache to speed-up |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1464 // things on multi-frame images |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1465 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1466 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1467 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1468 { |
4274 | 1469 ServerContext::DicomCacheLocker locker(*this, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1470 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1471 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1472 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1473 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1474 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1475 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1476 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1477 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1478 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1479 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1480 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1481 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1482 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1483 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1484 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1485 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1486 // TODO: Store the raw buffer in the DicomCacheLocker |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1487 std::string dicomContent; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1488 ReadDicom(dicomContent, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1489 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1490 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1491 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1492 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1493 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1494 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1495 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1496 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1497 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1498 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1499 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1500 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1501 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1502 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1503 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1504 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1505 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1506 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1507 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1508 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1509 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1510 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1511 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1512 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1513 ServerContext::DicomCacheLocker locker(*this, publicId); |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4196
diff
changeset
|
1514 return locker.GetDicom().DecodeFrame(frameIndex); |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1515 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1516 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1517 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1518 return NULL; // Built-in decoder is disabled |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1519 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1520 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1521 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1522 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1523 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1524 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1525 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1526 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1527 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1528 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1529 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1530 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1531 decoded.reset(dicom.GetParsedDicomFile().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1532 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1533 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1534 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1535 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1536 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1537 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1538 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1539 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1540 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1541 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1542 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1543 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1544 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1545 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1546 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1547 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1548 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1549 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1550 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1551 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1552 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1553 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1554 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1555 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1556 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1557 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1558 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1559 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1560 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1561 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1562 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1563 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1564 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1565 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1566 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1567 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1568 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1569 { |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4196
diff
changeset
|
1570 return dicom.GetParsedDicomFile().DecodeFrame(frameIndex); |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1571 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1572 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1573 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1574 return NULL; |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1575 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1576 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1577 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1578 |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1579 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1580 size_t size, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1581 unsigned int frameIndex) |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1582 { |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1583 DicomInstanceToStore instance; |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1584 instance.SetBuffer(dicom, size); |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1585 return DecodeDicomFrame(instance, frameIndex); |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1586 } |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1587 |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1588 |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1589 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1590 std::string& sopInstanceUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1591 DicomStoreUserConnection& connection, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1592 const std::string& dicom, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1593 bool hasMoveOriginator, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1594 const std::string& moveOriginatorAet, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1595 uint16_t moveOriginatorId) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1596 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1597 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1598 |
3911
0ef7f4528be2
renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3910
diff
changeset
|
1599 if (!transcodeDicomProtocol_ || |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1600 !connection.GetParameters().GetRemoteModality().IsTranscodingAllowed()) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1601 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1602 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1603 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1604 } |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1605 else |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1606 { |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
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1607 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), |
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1608 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
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1609 } |
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1610 } |
3930
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1611 |
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1612 |
3944
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1613 bool ServerContext::Transcode(DicomImage& target, |
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1614 DicomImage& source /* in, "GetParsed()" possibly modified */, |
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1615 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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1616 bool allowNewSopInstanceUid) |
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1617 { |
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1618 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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1619 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1620 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
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1621 { |
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1622 return true; |
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1623 } |
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1624 } |
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1625 |
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1626 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1627 if (HasPlugins() && |
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1628 GetPlugins().HasCustomTranscoder()) |
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|
1629 { |
3951
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1630 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
3944
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|
1631 { |
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|
1632 return true; |
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1633 } |
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1634 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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|
1635 { |
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|
1636 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
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1637 << "fallback to the built-in DCMTK transcoder"; |
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1638 } |
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1639 } |
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|
1640 #endif |
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|
1641 |
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|
1642 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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1643 { |
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|
1644 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
3944
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1645 } |
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1646 else |
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|
1647 { |
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1648 return false; |
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|
1649 } |
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1650 } |
4375
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|
1651 |
4376
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diff
changeset
|
1652 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const |
4375
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1653 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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|
1654 static const std::string redactedContent = "*** POTENTIAL PHI ***"; |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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|
1655 |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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diff
changeset
|
1656 const DicomTag& tag = element.GetTag(); |
4376
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1657 if (deidentifyLogs_ && ( |
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|
1658 logsDeidentifierRules_.IsCleared(tag) || |
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diff
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|
1659 logsDeidentifierRules_.IsRemoved(tag) || |
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|
1660 logsDeidentifierRules_.IsReplaced(tag))) |
4375
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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|
1661 { |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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|
1662 return redactedContent; |
208029732d51
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|
1663 } |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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diff
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|
1664 else |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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diff
changeset
|
1665 { |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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diff
changeset
|
1666 return element.GetValue().GetContent(); |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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diff
changeset
|
1667 } |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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diff
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|
1668 } |
224 | 1669 } |