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annotate OrthancServer/Search/HierarchicalMatcher.cpp @ 2200:af60b784d2b8

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Ignore "Group Length" tags in C-FIND queries
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 06 Dec 2016 14:40:34 +0100
parents 655489d9165d
children a3a65de1840f
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "../PrecompiledHeadersServer.h"
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34 #include "HierarchicalMatcher.h"
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35
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36 #include "../../Core/Logging.h"
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37 #include "../../Core/OrthancException.h"
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38 #include "../FromDcmtkBridge.h"
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39 #include "../ToDcmtkBridge.h"
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40
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41 #include <dcmtk/dcmdata/dcfilefo.h>
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42
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43 namespace Orthanc
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44 {
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45 HierarchicalMatcher::HierarchicalMatcher(ParsedDicomFile& query,
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46 bool caseSensitivePN)
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47 {
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48 Setup(*query.GetDcmtkObject().getDataset(),
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49 caseSensitivePN,
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50 query.GetEncoding());
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51 }
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52
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53
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54 HierarchicalMatcher::~HierarchicalMatcher()
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55 {
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56 for (Constraints::iterator it = constraints_.begin();
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57 it != constraints_.end(); ++it)
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58 {
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59 if (it->second != NULL)
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60 {
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61 delete it->second;
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62 }
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63 }
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64
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65 for (Sequences::iterator it = sequences_.begin();
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66 it != sequences_.end(); ++it)
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67 {
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68 if (it->second != NULL)
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69 {
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70 delete it->second;
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71 }
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72 }
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73 }
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74
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75
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76 void HierarchicalMatcher::Setup(DcmItem& dataset,
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77 bool caseSensitivePN,
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78 Encoding encoding)
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79 {
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80 for (unsigned long i = 0; i < dataset.card(); i++)
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81 {
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82 DcmElement* element = dataset.getElement(i);
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83 if (element == NULL)
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84 {
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85 throw OrthancException(ErrorCode_InternalError);
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86 }
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87
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88 DicomTag tag(FromDcmtkBridge::Convert(element->getTag()));
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89 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET || // Ignore encoding
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90 tag.GetElement() == 0x0000) // Ignore all "Group Length" tags
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91 {
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92 continue;
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93 }
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94
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95 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(tag);
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96
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97 if (constraints_.find(tag) != constraints_.end() ||
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98 sequences_.find(tag) != sequences_.end())
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99 {
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100 throw OrthancException(ErrorCode_BadRequest);
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101 }
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102
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103 if (vr == ValueRepresentation_Sequence)
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104 {
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105 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element);
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106
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107 if (sequence.card() == 0 ||
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108 (sequence.card() == 1 && sequence.getItem(0)->card() == 0))
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109 {
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110 // Universal matching of a sequence
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111 sequences_[tag] = NULL;
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112 }
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113 else if (sequence.card() == 1)
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114 {
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115 sequences_[tag] = new HierarchicalMatcher(*sequence.getItem(0), caseSensitivePN, encoding);
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116 }
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117 else
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118 {
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119 throw OrthancException(ErrorCode_BadRequest);
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120 }
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121 }
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122 else
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123 {
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124 std::auto_ptr<DicomValue> value(FromDcmtkBridge::ConvertLeafElement
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125 (*element, DicomToJsonFlags_None,
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126 ORTHANC_MAXIMUM_TAG_LENGTH, encoding));
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127
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128 if (value->IsBinary())
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129 {
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130 if (!value->GetContent().empty())
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131 {
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132 LOG(WARNING) << "This C-Find modality worklist query contains a non-empty tag ("
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133 << tag.Format() << ") with UN (unknown) value representation. "
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134 << "It will be ignored.";
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135 }
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136
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137 constraints_[tag] = NULL;
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138 }
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139 else if (value->IsNull() ||
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140 value->GetContent().empty())
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141 {
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142 // This is an universal matcher
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143 constraints_[tag] = NULL;
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144 }
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145 else
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parents:
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146 {
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147 // DICOM specifies that searches must be case sensitive, except
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148 // for tags with a PN value representation
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parents:
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149 bool sensitive = true;
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
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parents: 2006
diff changeset
150 if (vr == ValueRepresentation_PersonName)
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151 {
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152 sensitive = caseSensitivePN;
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153 }
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154
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parents:
diff changeset
155 constraints_[tag] = IFindConstraint::ParseDicomConstraint(tag, value->GetContent(), sensitive);
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156 }
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parents:
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157 }
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parents:
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158 }
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parents:
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159 }
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parents:
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160
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parents:
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161
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parents:
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162 std::string HierarchicalMatcher::Format(const std::string& prefix) const
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163 {
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164 std::string s;
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165
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166 for (Constraints::const_iterator it = constraints_.begin();
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167 it != constraints_.end(); ++it)
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168 {
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169 s += prefix + it->first.Format() + " ";
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170
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171 if (it->second == NULL)
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172 {
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173 s += "*\n";
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parents:
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174 }
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parents:
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175 else
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parents:
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176 {
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177 s += it->second->Format() + "\n";
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178 }
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parents:
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179 }
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parents:
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180
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parents:
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181 for (Sequences::const_iterator it = sequences_.begin();
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parents:
diff changeset
182 it != sequences_.end(); ++it)
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parents:
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183 {
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parents:
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184 s += prefix + it->first.Format() + " ";
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parents:
diff changeset
185
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parents:
diff changeset
186 if (it->second == NULL)
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parents:
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187 {
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188 s += "*\n";
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parents:
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189 }
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parents:
diff changeset
190 else
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parents:
diff changeset
191 {
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parents:
diff changeset
192 s += "Sequence:\n" + it->second->Format(prefix + " ");
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parents:
diff changeset
193 }
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parents:
diff changeset
194 }
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parents:
diff changeset
195
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parents:
diff changeset
196 return s;
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parents:
diff changeset
197 }
1796
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diff changeset
198
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diff changeset
199
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parents: 1795
diff changeset
200 bool HierarchicalMatcher::Match(ParsedDicomFile& dicom) const
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diff changeset
201 {
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parents: 1795
diff changeset
202 return MatchInternal(*dicom.GetDcmtkObject().getDataset(),
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
203 dicom.GetEncoding());
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
204 }
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parents: 1795
diff changeset
205
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
206
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
207 bool HierarchicalMatcher::MatchInternal(DcmItem& item,
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parents: 1795
diff changeset
208 Encoding encoding) const
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diff changeset
209 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
210 for (Constraints::const_iterator it = constraints_.begin();
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
211 it != constraints_.end(); ++it)
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parents: 1795
diff changeset
212 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
213 if (it->second != NULL)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
214 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
215 DcmTagKey tag = ToDcmtkBridge::Convert(it->first);
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parents: 1795
diff changeset
216
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diff changeset
217 DcmElement* element = NULL;
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parents: 1795
diff changeset
218 if (!item.findAndGetElement(tag, element).good() ||
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
219 element == NULL)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
220 {
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parents: 1795
diff changeset
221 return false;
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
222 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
223
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
224 std::auto_ptr<DicomValue> value(FromDcmtkBridge::ConvertLeafElement
1929
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
225 (*element, DicomToJsonFlags_None,
cda5b0ab4ce5 ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
226 ORTHANC_MAXIMUM_TAG_LENGTH, encoding));
1796
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parents: 1795
diff changeset
227
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
228 if (value->IsNull() ||
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
229 value->IsBinary() ||
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
230 !it->second->Match(value->GetContent()))
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parents: 1795
diff changeset
231 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
232 return false;
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parents: 1795
diff changeset
233 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
234 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
235 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
236
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
237 for (Sequences::const_iterator it = sequences_.begin();
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
238 it != sequences_.end(); ++it)
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
239 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
240 if (it->second != NULL)
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
241 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
242 DcmTagKey tag = ToDcmtkBridge::Convert(it->first);
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
243
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
244 DcmSequenceOfItems* sequence = NULL;
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
245 if (!item.findAndGetSequence(tag, sequence).good() ||
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
246 sequence == NULL)
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
247 {
1891
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1890
diff changeset
248 continue;
1796
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parents: 1795
diff changeset
249 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
250
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
251 bool match = false;
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parents: 1795
diff changeset
252
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
253 for (unsigned long i = 0; i < sequence->card(); i++)
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
254 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
255 if (it->second->MatchInternal(*sequence->getItem(i), encoding))
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
256 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
257 match = true;
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
258 break;
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
259 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
260 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
261
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
262 if (!match)
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
263 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
264 return false;
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
265 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
266 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
267 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
268
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
269 return true;
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
270 }
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
271
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parents: 1795
diff changeset
272
1797
23722a191e4e worklists are working
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parents: 1796
diff changeset
273 DcmDataset* HierarchicalMatcher::ExtractInternal(DcmItem& source,
1796
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
274 Encoding encoding) const
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
275 {
1797
23722a191e4e worklists are working
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parents: 1796
diff changeset
276 std::auto_ptr<DcmDataset> target(new DcmDataset);
1796
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
277
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
278 for (Constraints::const_iterator it = constraints_.begin();
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
279 it != constraints_.end(); ++it)
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
280 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
281 DcmTagKey tag = ToDcmtkBridge::Convert(it->first);
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
282
5e08a5fe6b27 HierarchicalMatcher - extracting tags
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parents: 1795
diff changeset
283 DcmElement* element = NULL;
1797
23722a191e4e worklists are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1796
diff changeset
284 if (source.findAndGetElement(tag, element).good() &&
1796
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
285 element != NULL)
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
286 {
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
287 std::auto_ptr<DcmElement> cloned(FromDcmtkBridge::CreateElementForTag(it->first));
5e08a5fe6b27 HierarchicalMatcher - extracting tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1795
diff changeset
288 cloned->copyFrom(*element);
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289 target->insert(cloned.release());
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290 }
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291 }
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292
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293 for (Sequences::const_iterator it = sequences_.begin();
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294 it != sequences_.end(); ++it)
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295 {
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296 DcmTagKey tag = ToDcmtkBridge::Convert(it->first);
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297
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298 DcmSequenceOfItems* sequence = NULL;
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299 if (source.findAndGetSequence(tag, sequence).good() &&
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300 sequence != NULL)
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301 {
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302 std::auto_ptr<DcmSequenceOfItems> cloned(new DcmSequenceOfItems(tag));
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303
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304 for (unsigned long i = 0; i < sequence->card(); i++)
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305 {
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306 if (it->second == NULL)
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307 {
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308 cloned->append(new DcmItem(*sequence->getItem(i)));
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309 }
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310 else if (it->second->MatchInternal(*sequence->getItem(i), encoding)) // TODO Might be optimized
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311 {
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312 // It is necessary to encapsulate the child dataset into a
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313 // "DcmItem" object before it can be included in a
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314 // sequence. Otherwise, "dciodvfy" reports an error "Bad
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315 // tag in sequence - Expecting Item or Sequence Delimiter."
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316 std::auto_ptr<DcmDataset> child(it->second->ExtractInternal(*sequence->getItem(i), encoding));
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317 cloned->append(new DcmItem(*child));
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318 }
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319 }
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320
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321 target->insert(cloned.release());
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322 }
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323 }
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324
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325 return target.release();
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326 }
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327
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328
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329 ParsedDicomFile* HierarchicalMatcher::Extract(ParsedDicomFile& dicom) const
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330 {
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331 std::auto_ptr<DcmDataset> dataset(ExtractInternal(*dicom.GetDcmtkObject().getDataset(),
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332 dicom.GetEncoding()));
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333
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334 std::auto_ptr<ParsedDicomFile> result(new ParsedDicomFile(*dataset));
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335 result->SetEncoding(Encoding_Utf8);
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336
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337 return result.release();
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338 }
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339 }