annotate OrthancServer/Internals/DicomImageDecoder.cpp @ 1826:ac5b0b4e2434

refactoring of DicomImageDecoder
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 25 Nov 2015 16:00:57 +0100
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "../PrecompiledHeadersServer.h"
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34 #include "DicomImageDecoder.h"
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35
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36
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37 /*=========================================================================
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38
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39 This file is based on portions of the following project
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40 (cf. function "DecodePsmctRle1()"):
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41
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42 Program: GDCM (Grassroots DICOM). A DICOM library
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43 Module: http://gdcm.sourceforge.net/Copyright.html
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44
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45 Copyright (c) 2006-2011 Mathieu Malaterre
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46 Copyright (c) 1993-2005 CREATIS
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47 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image)
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48 All rights reserved.
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49
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50 Redistribution and use in source and binary forms, with or without
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51 modification, are permitted provided that the following conditions are met:
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52
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53 * Redistributions of source code must retain the above copyright notice,
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54 this list of conditions and the following disclaimer.
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55
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56 * Redistributions in binary form must reproduce the above copyright notice,
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57 this list of conditions and the following disclaimer in the documentation
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58 and/or other materials provided with the distribution.
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59
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60 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any
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61 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to
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62 endorse or promote products derived from this software without specific
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63 prior written permission.
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64
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65 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
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66 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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67 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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68 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
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69 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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70 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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71 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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72 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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73 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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74 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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75
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76 =========================================================================*/
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77
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78
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79
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80 #include "../PrecompiledHeadersServer.h"
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81 #include "DicomImageDecoder.h"
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82
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83 #include "../../Core/Logging.h"
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84 #include "../../Core/OrthancException.h"
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85 #include "../../Core/Images/Image.h"
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86 #include "../../Core/Images/ImageProcessing.h"
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87 #include "../../Core/DicomFormat/DicomIntegerPixelAccessor.h"
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88 #include "../ToDcmtkBridge.h"
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89 #include "../FromDcmtkBridge.h"
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90 #include "../ParsedDicomFile.h"
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91
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92 #include <boost/lexical_cast.hpp>
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93
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94 #include <dcmtk/dcmdata/dcfilefo.h>
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95
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96 #if ORTHANC_JPEG_LOSSLESS_ENABLED == 1
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97 #include <dcmtk/dcmjpls/djcodecd.h>
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98 #include <dcmtk/dcmjpls/djcparam.h>
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99 #include <dcmtk/dcmjpeg/djrplol.h>
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100 #endif
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101
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102
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103 namespace Orthanc
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104 {
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105 static const DicomTag DICOM_TAG_CONTENT(0x07a1, 0x100a);
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106 static const DicomTag DICOM_TAG_COMPRESSION_TYPE(0x07a1, 0x1011);
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107
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108
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109 static bool IsJpegLossless(const DcmDataset& dataset)
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110 {
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111 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
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112 return (dataset.getOriginalXfer() == EXS_JPEGLSLossless ||
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113 dataset.getOriginalXfer() == EXS_JPEGLSLossy);
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114 }
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115
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116
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117 static bool IsPsmctRle1(DcmDataset& dataset)
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118 {
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119 DcmElement* e;
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120 char* c;
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121
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122 // Check whether the DICOM instance contains an image encoded with
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123 // the PMSCT_RLE1 scheme.
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124 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_COMPRESSION_TYPE), e).good() ||
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125 e == NULL ||
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126 !e->isaString() ||
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127 !e->getString(c).good() ||
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128 c == NULL ||
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129 strcmp("PMSCT_RLE1", c))
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130 {
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131 return false;
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132 }
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133 else
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134 {
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135 return true;
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136 }
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137 }
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138
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139
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140 static bool DecodePsmctRle1(std::string& output,
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141 DcmDataset& dataset)
846
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142 {
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143 // Check whether the DICOM instance contains an image encoded with
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144 // the PMSCT_RLE1 scheme.
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145 if (!IsPsmctRle1(dataset))
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146 {
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147 return false;
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148 }
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149
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150 // OK, this is a custom RLE encoding from Philips. Get the pixel
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151 // data from the appropriate private DICOM tag.
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152 Uint8* pixData = NULL;
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153 DcmElement* e;
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154 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_CONTENT), e).good() ||
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155 e == NULL ||
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156 e->getUint8Array(pixData) != EC_Normal)
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157 {
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158 return false;
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159 }
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160
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161 // The "unsigned" below IS VERY IMPORTANT
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162 const uint8_t* inbuffer = reinterpret_cast<const uint8_t*>(pixData);
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163 const size_t length = e->getLength();
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164
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165 /**
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166 * The code below is an adaptation of a sample code for GDCM by
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167 * Mathieu Malaterre (under a BSD license).
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168 * http://gdcm.sourceforge.net/html/rle2img_8cxx-example.html
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169 **/
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170
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171 // RLE pass
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172 std::vector<uint8_t> temp;
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173 temp.reserve(length);
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174 for (size_t i = 0; i < length; i++)
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175 {
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176 if (inbuffer[i] == 0xa5)
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177 {
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178 temp.push_back(inbuffer[i+2]);
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179 for (uint8_t repeat = inbuffer[i + 1]; repeat != 0; repeat--)
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180 {
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181 temp.push_back(inbuffer[i+2]);
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182 }
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183 i += 2;
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184 }
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185 else
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186 {
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187 temp.push_back(inbuffer[i]);
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188 }
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189 }
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190
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191 // Delta encoding pass
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192 uint16_t delta = 0;
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193 output.clear();
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194 output.reserve(temp.size());
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195 for (size_t i = 0; i < temp.size(); i++)
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196 {
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197 uint16_t value;
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198
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199 if (temp[i] == 0x5a)
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200 {
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201 uint16_t v1 = temp[i + 1];
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202 uint16_t v2 = temp[i + 2];
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203 value = (v2 << 8) + v1;
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204 i += 2;
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205 }
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206 else
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207 {
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208 value = delta + (int8_t) temp[i];
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209 }
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210
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211 output.push_back(value & 0xff);
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212 output.push_back(value >> 8);
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213 delta = value;
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214 }
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215
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216 if (output.size() % 2)
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217 {
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218 output.resize(output.size() - 1);
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219 }
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220
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221 return true;
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222 }
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223
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224
942
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225 class DicomImageDecoder::ImageSource
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226 {
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227 private:
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228 std::string psmct_;
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229 std::auto_ptr<DicomIntegerPixelAccessor> slowAccessor_;
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230
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231 public:
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232 void Setup(DcmDataset& dataset,
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233 unsigned int frame)
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234 {
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235 psmct_.clear();
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236 slowAccessor_.reset(NULL);
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237
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238 // See also: http://support.dcmtk.org/wiki/dcmtk/howto/accessing-compressed-data
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239
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240 DicomMap m;
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241 FromDcmtkBridge::Convert(m, dataset);
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242
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243 /**
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244 * Create an accessor to the raw values of the DICOM image.
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245 **/
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246
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247 DcmElement* e;
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248 if (dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_DATA), e).good() &&
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249 e != NULL)
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250 {
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251 Uint8* pixData = NULL;
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252 if (e->getUint8Array(pixData) == EC_Normal)
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253 {
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254 slowAccessor_.reset(new DicomIntegerPixelAccessor(m, pixData, e->getLength()));
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255 }
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256 }
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257 else if (DecodePsmctRle1(psmct_, dataset))
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258 {
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259 LOG(INFO) << "The PMSCT_RLE1 decoding has succeeded";
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260 Uint8* pixData = NULL;
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261 if (psmct_.size() > 0)
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262 {
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263 pixData = reinterpret_cast<Uint8*>(&psmct_[0]);
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264 }
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265
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266 slowAccessor_.reset(new DicomIntegerPixelAccessor(m, pixData, psmct_.size()));
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267 }
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268
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269 if (slowAccessor_.get() == NULL)
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270 {
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271 throw OrthancException(ErrorCode_BadFileFormat);
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272 }
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273
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274 slowAccessor_->SetCurrentFrame(frame);
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275 }
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276
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277 unsigned int GetWidth() const
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278 {
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279 assert(slowAccessor_.get() != NULL);
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280 return slowAccessor_->GetInformation().GetWidth();
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281 }
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282
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283 unsigned int GetHeight() const
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284 {
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285 assert(slowAccessor_.get() != NULL);
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286 return slowAccessor_->GetInformation().GetHeight();
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287 }
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288
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289 unsigned int GetChannelCount() const
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290 {
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291 assert(slowAccessor_.get() != NULL);
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292 return slowAccessor_->GetInformation().GetChannelCount();
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293 }
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294
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295 const DicomIntegerPixelAccessor& GetAccessor() const
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296 {
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297 assert(slowAccessor_.get() != NULL);
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298 return *slowAccessor_;
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299 }
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300
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301 unsigned int GetSize() const
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302 {
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303 assert(slowAccessor_.get() != NULL);
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304 return slowAccessor_->GetSize();
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305 }
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306 };
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307
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308
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309 ImageAccessor* DicomImageDecoder::CreateImage(DcmDataset& dataset)
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310 {
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311 DicomMap m;
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312 FromDcmtkBridge::Convert(m, dataset);
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313
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314 DicomImageInformation info(m);
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315 PixelFormat format;
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316
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317 if (!info.ExtractPixelFormat(format))
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318 {
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319 LOG(WARNING) << "Unsupported DICOM image: " << info.GetBitsStored()
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320 << "bpp, " << info.GetChannelCount() << " channels, "
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321 << (info.IsSigned() ? "signed" : "unsigned")
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322 << (info.IsPlanar() ? ", planar, " : ", non-planar, ")
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323 << EnumerationToString(info.GetPhotometricInterpretation())
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324 << " photometric interpretation";
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325 throw OrthancException(ErrorCode_NotImplemented);
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326 }
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327
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328 return new Image(format, info.GetWidth(), info.GetHeight());
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329 }
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330
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331
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332 bool DicomImageDecoder::IsUncompressedImage(const DcmDataset& dataset)
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333 {
851
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334 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
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335 return (dataset.getOriginalXfer() == EXS_Unknown ||
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336 dataset.getOriginalXfer() == EXS_LittleEndianImplicit ||
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337 dataset.getOriginalXfer() == EXS_BigEndianImplicit ||
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338 dataset.getOriginalXfer() == EXS_LittleEndianExplicit ||
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339 dataset.getOriginalXfer() == EXS_BigEndianExplicit);
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340 }
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341
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342
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343 template <typename PixelType>
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344 static void CopyPixels(ImageAccessor& target,
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345 const DicomIntegerPixelAccessor& source)
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346 {
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347 const PixelType minValue = std::numeric_limits<PixelType>::min();
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348 const PixelType maxValue = std::numeric_limits<PixelType>::max();
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349
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350 for (unsigned int y = 0; y < source.GetInformation().GetHeight(); y++)
847
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351 {
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352 PixelType* pixel = reinterpret_cast<PixelType*>(target.GetRow(y));
853
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353 for (unsigned int x = 0; x < source.GetInformation().GetWidth(); x++)
847
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354 {
853
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355 for (unsigned int c = 0; c < source.GetInformation().GetChannelCount(); c++, pixel++)
847
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356 {
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357 int32_t v = source.GetValue(x, y, c);
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358 if (v < static_cast<int32_t>(minValue))
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359 {
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360 *pixel = minValue;
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361 }
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362 else if (v > static_cast<int32_t>(maxValue))
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363 {
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364 *pixel = maxValue;
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365 }
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366 else
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367 {
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368 *pixel = static_cast<PixelType>(v);
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369 }
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370 }
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371 }
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372 }
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373 }
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374
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375
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376 ImageAccessor* DicomImageDecoder::DecodeUncompressedImage(DcmDataset& dataset,
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377 unsigned int frame)
847
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378 {
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379 if (!IsUncompressedImage(dataset))
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380 {
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381 throw OrthancException(ErrorCode_BadParameterType);
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382 }
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383
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diff changeset
384 return DecodeUncompressedImageInternal(dataset, frame);
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385 }
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386
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387
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diff changeset
388 ImageAccessor* DicomImageDecoder::DecodeUncompressedImageInternal(DcmDataset& dataset,
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389 unsigned int frame)
847
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390 {
852
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diff changeset
391 ImageSource source;
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diff changeset
392 source.Setup(dataset, frame);
847
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diff changeset
393
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394
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diff changeset
395 /**
858
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diff changeset
396 * Resize the target image.
847
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diff changeset
397 **/
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diff changeset
398
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diff changeset
399 std::auto_ptr<ImageAccessor> target(CreateImage(dataset));
847
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400
1826
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diff changeset
401 if (source.GetWidth() != target->GetWidth() ||
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diff changeset
402 source.GetHeight() != target->GetHeight())
847
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diff changeset
403 {
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404 throw OrthancException(ErrorCode_InternalError);
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diff changeset
405 }
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diff changeset
406
03ea55da7429 fully functional JPEG-LS conversion
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diff changeset
407
03ea55da7429 fully functional JPEG-LS conversion
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diff changeset
408 /**
854
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409 * If the format of the DICOM buffer is natively supported, use a
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diff changeset
410 * direct access to copy its values.
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411 **/
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diff changeset
412
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diff changeset
413 const DicomImageInformation& info = source.GetAccessor().GetInformation();
ff530685e46a fast version of image copy
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414
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diff changeset
415 bool fastVersionSuccess = false;
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diff changeset
416 PixelFormat sourceFormat;
863
3c0d0836f704 refactoring
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diff changeset
417 if (!info.IsPlanar() &&
3c0d0836f704 refactoring
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diff changeset
418 info.ExtractPixelFormat(sourceFormat))
854
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419 {
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diff changeset
420 try
ff530685e46a fast version of image copy
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diff changeset
421 {
1190
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diff changeset
422 size_t frameSize = info.GetHeight() * info.GetWidth() * GetBytesPerPixel(sourceFormat);
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diff changeset
423 if ((frame + 1) * frameSize <= source.GetSize())
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
424 {
851a55d183c9 fix issue 22
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diff changeset
425 const uint8_t* buffer = reinterpret_cast<const uint8_t*>(source.GetAccessor().GetPixelData());
854
ff530685e46a fast version of image copy
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diff changeset
426
1190
851a55d183c9 fix issue 22
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diff changeset
427 ImageAccessor sourceImage;
851a55d183c9 fix issue 22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1015
diff changeset
428 sourceImage.AssignReadOnly(sourceFormat,
851a55d183c9 fix issue 22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1015
diff changeset
429 info.GetWidth(),
851a55d183c9 fix issue 22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1015
diff changeset
430 info.GetHeight(),
851a55d183c9 fix issue 22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1015
diff changeset
431 info.GetWidth() * GetBytesPerPixel(sourceFormat),
851a55d183c9 fix issue 22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1015
diff changeset
432 buffer + frame * frameSize);
851a55d183c9 fix issue 22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1015
diff changeset
433
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
434 ImageProcessing::Convert(*target, sourceImage);
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
435 ImageProcessing::ShiftRight(*target, info.GetShift());
1190
851a55d183c9 fix issue 22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1015
diff changeset
436 fastVersionSuccess = true;
851a55d183c9 fix issue 22
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1015
diff changeset
437 }
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
438 }
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
439 catch (OrthancException&)
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
440 {
859
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
441 // Unsupported conversion, use the slow version
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
442 }
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
443 }
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
444
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
445 /**
859
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
446 * Slow version : loop over the DICOM buffer, storing its value
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
447 * into the target image.
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
448 **/
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
449
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
450 if (!fastVersionSuccess)
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
451 {
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
452 switch (target->GetFormat())
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
453 {
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
454 case PixelFormat_RGB24:
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
455 case PixelFormat_RGBA32:
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
456 case PixelFormat_Grayscale8:
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
457 CopyPixels<uint8_t>(*target, source.GetAccessor());
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
458 break;
860
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 859
diff changeset
459
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
460 case PixelFormat_Grayscale16:
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
461 CopyPixels<uint16_t>(*target, source.GetAccessor());
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
462 break;
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
463
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
464 case PixelFormat_SignedGrayscale16:
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
465 CopyPixels<int16_t>(*target, source.GetAccessor());
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
466 break;
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
467
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
468 default:
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
469 throw OrthancException(ErrorCode_InternalError);
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
470 }
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
471 }
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
472
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
473 return target.release();
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
474 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
475
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
476
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 #if ORTHANC_JPEG_LOSSLESS_ENABLED == 1
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
478 ImageAccessor* DicomImageDecoder::DecodeJpegLossless(DcmDataset& dataset,
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
479 unsigned int frame)
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 if (!IsJpegLossless(dataset))
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 throw OrthancException(ErrorCode_BadParameterType);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 DcmElement *element = NULL;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_DATA), element).good())
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 throw OrthancException(ErrorCode_BadFileFormat);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 DcmPixelSequence* pixelSequence = NULL;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 if (!pixelData.getEncapsulatedRepresentation
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495 (dataset.getOriginalXfer(), NULL, pixelSequence).good())
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 throw OrthancException(ErrorCode_BadFileFormat);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
500 std::auto_ptr<ImageAccessor> target(CreateImage(dataset));
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 /**
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503 * The "DJLSLosslessDecoder" and "DJLSNearLosslessDecoder" in DCMTK
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 * are exactly the same, except for the "supportedTransferSyntax()"
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505 * virtual function.
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 * http://support.dcmtk.org/docs/classDJLSDecoderBase.html
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 **/
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 DJLSLosslessDecoder decoder; DJLSCodecParameter parameters;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 //DJLSNearLosslessDecoder decoder; DJLSCodecParameter parameters;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 Uint32 startFragment = 0; // Default
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513 OFString decompressedColorModel; // Out
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
514 DJ_RPLossless representationParameter;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515 OFCondition c = decoder.decodeFrame(&representationParameter, pixelSequence, &parameters,
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
516 &dataset, frame, startFragment, target->GetBuffer(),
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
517 target->GetSize(), decompressedColorModel);
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519 if (!c.good())
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 throw OrthancException(ErrorCode_InternalError);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
522 }
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
523
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
524 return target.release();
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
526 #endif
846
715ab7674993 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 845
diff changeset
527
715ab7674993 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 845
diff changeset
528
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
529
859
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
530
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
531 ImageAccessor* DicomImageDecoder::Decode(ParsedDicomFile& dicom,
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
532 unsigned int frame)
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
533 {
1824
b530c3dfe2a6 refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
534 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
b530c3dfe2a6 refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
535
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
536 if (IsUncompressedImage(dataset))
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
537 {
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
538 return DecodeUncompressedImage(dataset, frame);
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
539 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
540
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
541 #if ORTHANC_JPEG_LOSSLESS_ENABLED == 1
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
542 if (IsJpegLossless(dataset))
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
543 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
544 LOG(INFO) << "Decoding a JPEG-LS image";
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
545 return DecodeJpegLossless(dataset, frame);
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
546 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
547 #endif
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
548
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
549
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
550 #if ORTHANC_JPEG_ENABLED == 1
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
551 // TODO Implement this part to speed up JPEG decompression
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
552 #endif
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
553
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
554 /**
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
555 * This DICOM image format is not natively supported by
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
556 * Orthanc. As a last resort, try and decode it through
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
557 * DCMTK. This will result in higher memory consumption. This is
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
558 * actually the second example of the following page:
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
559 * http://support.dcmtk.org/docs/mod_dcmjpeg.html#Examples
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
560 **/
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
561
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
562 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
563 LOG(INFO) << "Using DCMTK to decode a compressed image";
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
564
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
565 std::auto_ptr<DcmDataset> converted(dynamic_cast<DcmDataset*>(dataset.clone()));
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
566 converted->chooseRepresentation(EXS_LittleEndianExplicit, NULL);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
567
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
568 if (converted->canWriteXfer(EXS_LittleEndianExplicit))
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
569 {
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
570 return DecodeUncompressedImageInternal(*converted, frame);
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
571 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
572 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
573
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
574 return NULL;
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
575 }
859
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
576
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
577
1015
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
578 static bool IsColorImage(PixelFormat format)
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
579 {
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
580 return (format == PixelFormat_RGB24 ||
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
581 format == PixelFormat_RGBA32);
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
582 }
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
583
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
584
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
585 bool DicomImageDecoder::TruncateDecodedImage(std::auto_ptr<ImageAccessor>& image,
1824
b530c3dfe2a6 refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
586 PixelFormat format,
b530c3dfe2a6 refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
587 bool allowColorConversion)
859
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
588 {
1015
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
589 // If specified, prevent the conversion between color and
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
590 // grayscale images
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
591 bool isSourceColor = IsColorImage(image->GetFormat());
1015
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
592 bool isTargetColor = IsColorImage(format);
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
593
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
594 if (!allowColorConversion)
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
595 {
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
596 if (isSourceColor ^ isTargetColor)
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
597 {
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
598 return false;
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
599 }
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
600 }
f009f7c75069 fix integration tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 942
diff changeset
601
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
602 if (image->GetFormat() != format)
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
603 {
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
604 // A conversion is required
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
605 std::auto_ptr<ImageAccessor> target(new Image(format, image->GetWidth(), image->GetHeight()));
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
606 ImageProcessing::Convert(*target, *image);
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
607 image = target;
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
608 }
859
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
609
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
610 return true;
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
611 }
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
612
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
613
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
614 bool DicomImageDecoder::PreviewDecodedImage(std::auto_ptr<ImageAccessor>& image)
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
615 {
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
616 switch (image->GetFormat())
861
a546b05a43da fix PngWriter
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 860
diff changeset
617 {
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
618 case PixelFormat_RGB24:
859
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
619 {
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
620 // Directly return color images without modification (RGB)
859
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
621 return true;
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
622 }
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
623
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
624 case PixelFormat_Grayscale8:
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
625 case PixelFormat_Grayscale16:
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
626 case PixelFormat_SignedGrayscale16:
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
627 {
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
628 // Grayscale image: Stretch its dynamics to the [0,255] range
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
629 int64_t a, b;
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
630 ImageProcessing::GetMinMaxValue(a, b, *image);
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
631
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
632 if (a == b)
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
633 {
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
634 ImageProcessing::Set(*image, 0);
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
635 }
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
636 else
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
637 {
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
638 ImageProcessing::ShiftScale(*image, static_cast<float>(-a), 255.0f / static_cast<float>(b - a));
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
639 }
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
640
1826
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
641 // If the source image is not grayscale 8bpp, convert it
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
642 if (image->GetFormat() != PixelFormat_Grayscale8)
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
643 {
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
644 std::auto_ptr<ImageAccessor> target(new Image(PixelFormat_Grayscale8, image->GetWidth(), image->GetHeight()));
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
645 ImageProcessing::Convert(*target, *image);
ac5b0b4e2434 refactoring of DicomImageDecoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1824
diff changeset
646 image = target;
863
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
647 }
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
648
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
649 return true;
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
650 }
3c0d0836f704 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 861
diff changeset
651
859
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
652 default:
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
653 throw OrthancException(ErrorCode_NotImplemented);
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
654 }
610a9a1ed855 ImageProcessing::Convert
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 858
diff changeset
655 }
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
656 }