annotate OrthancServer/Internals/DicomImageDecoder.cpp @ 852:5944b8b80842 jpeg

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 06 Jun 2014 10:28:02 +0200
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "../PrecompiledHeadersServer.h"
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34 #include "DicomImageDecoder.h"
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35
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36
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37 /*=========================================================================
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38
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39 This file is based on portions of the following project
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40 (cf. function "DecodePsmctRle1()"):
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41
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42 Program: GDCM (Grassroots DICOM). A DICOM library
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43 Module: http://gdcm.sourceforge.net/Copyright.html
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44
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45 Copyright (c) 2006-2011 Mathieu Malaterre
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46 Copyright (c) 1993-2005 CREATIS
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47 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image)
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48 All rights reserved.
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49
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50 Redistribution and use in source and binary forms, with or without
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51 modification, are permitted provided that the following conditions are met:
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52
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53 * Redistributions of source code must retain the above copyright notice,
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54 this list of conditions and the following disclaimer.
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55
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56 * Redistributions in binary form must reproduce the above copyright notice,
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57 this list of conditions and the following disclaimer in the documentation
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58 and/or other materials provided with the distribution.
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59
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60 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any
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61 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to
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62 endorse or promote products derived from this software without specific
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63 prior written permission.
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64
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65 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS''
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66 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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67 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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68 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
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69 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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70 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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71 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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72 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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73 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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74 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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75
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76 =========================================================================*/
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77
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78
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79
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80 #include "../../Core/OrthancException.h"
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81 #include "../../Core/DicomFormat/DicomIntegerPixelAccessor.h"
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82 #include "../ToDcmtkBridge.h"
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83 #include "../FromDcmtkBridge.h"
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84
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85 #include <glog/logging.h>
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86
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87 #include <boost/lexical_cast.hpp>
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88
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89 #if ORTHANC_JPEG_LOSSLESS_ENABLED == 1
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90 #include <dcmtk/dcmjpls/djcodecd.h>
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91 #include <dcmtk/dcmjpls/djcparam.h>
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92 #include <dcmtk/dcmjpeg/djrplol.h>
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93 #endif
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94
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95
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96 namespace Orthanc
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97 {
852
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98 class DicomImageDecoder::ImageSource
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99 {
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100 private:
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101 std::string psmct_;
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102 std::auto_ptr<DicomIntegerPixelAccessor> accessor_;
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103
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104 public:
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105 void Setup(DcmDataset& dataset,
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106 unsigned int frame)
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107 {
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108 // See also: http://support.dcmtk.org/wiki/dcmtk/howto/accessing-compressed-data
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109
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110 DicomMap m;
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111 FromDcmtkBridge::Convert(m, dataset);
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112
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113 /**
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114 * Create an accessor to the raw values of the DICOM image.
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115 **/
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116
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117 DcmElement* e;
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118 if (dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_DATA), e).good() &&
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119 e != NULL)
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120 {
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121 Uint8* pixData = NULL;
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122 if (e->getUint8Array(pixData) == EC_Normal)
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123 {
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124 accessor_.reset(new DicomIntegerPixelAccessor(m, pixData, e->getLength()));
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125 }
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126 }
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127 else if (DicomImageDecoder::DecodePsmctRle1(psmct_, dataset))
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128 {
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129 LOG(INFO) << "The PMSCT_RLE1 decoding has succeeded";
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130 Uint8* pixData = NULL;
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131 if (psmct_.size() > 0)
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132 {
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133 pixData = reinterpret_cast<Uint8*>(&psmct_[0]);
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134 }
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135
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136 accessor_.reset(new DicomIntegerPixelAccessor(m, pixData, psmct_.size()));
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137 }
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138
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139 if (accessor_.get() == NULL)
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140 {
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141 throw OrthancException(ErrorCode_BadFileFormat);
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142 }
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143
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144 accessor_->SetCurrentFrame(frame);
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145 }
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146
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147 unsigned int GetChannelCount() const
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148 {
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149 assert(accessor_.get() != NULL);
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150 return accessor_->GetChannelCount();
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151 }
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152
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153 const DicomIntegerPixelAccessor GetAccessor() const
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154 {
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155 assert(accessor_.get() != NULL);
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156 return *accessor_;
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157 }
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158 };
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159
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160
846
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161 static const DicomTag DICOM_TAG_CONTENT(0x07a1, 0x100a);
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162 static const DicomTag DICOM_TAG_COMPRESSION_TYPE(0x07a1, 0x1011);
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163
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164 bool DicomImageDecoder::IsPsmctRle1(DcmDataset& dataset)
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165 {
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166 DcmElement* e;
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167 char* c;
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168
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169 // Check whether the DICOM instance contains an image encoded with
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170 // the PMSCT_RLE1 scheme.
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171 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_COMPRESSION_TYPE), e).good() ||
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172 e == NULL ||
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173 !e->isaString() ||
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174 !e->getString(c).good() ||
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175 c == NULL ||
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176 strcmp("PMSCT_RLE1", c))
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177 {
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178 return false;
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179 }
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180 else
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181 {
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182 return true;
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183 }
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184 }
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185
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186
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187 bool DicomImageDecoder::DecodePsmctRle1(std::string& output,
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188 DcmDataset& dataset)
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189 {
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190 // Check whether the DICOM instance contains an image encoded with
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191 // the PMSCT_RLE1 scheme.
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192 if (!IsPsmctRle1(dataset))
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193 {
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194 return false;
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195 }
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196
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197 // OK, this is a custom RLE encoding from Philips. Get the pixel
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198 // data from the appropriate private DICOM tag.
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199 Uint8* pixData = NULL;
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200 DcmElement* e;
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201 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_CONTENT), e).good() ||
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202 e == NULL ||
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203 e->getUint8Array(pixData) != EC_Normal)
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204 {
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205 return false;
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206 }
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207
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208 // The "unsigned" below IS VERY IMPORTANT
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209 const uint8_t* inbuffer = reinterpret_cast<const uint8_t*>(pixData);
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210 const size_t length = e->getLength();
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211
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212 /**
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213 * The code below is an adaptation of a sample code for GDCM by
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214 * Mathieu Malaterre (under a BSD license).
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215 * http://gdcm.sourceforge.net/html/rle2img_8cxx-example.html
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216 **/
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217
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218 // RLE pass
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219 std::vector<uint8_t> temp;
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220 temp.reserve(length);
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221 for (size_t i = 0; i < length; i++)
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222 {
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223 if (inbuffer[i] == 0xa5)
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224 {
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225 temp.push_back(inbuffer[i+2]);
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226 for (uint8_t repeat = inbuffer[i + 1]; repeat != 0; repeat--)
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227 {
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diff changeset
228 temp.push_back(inbuffer[i+2]);
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229 }
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230 i += 2;
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231 }
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diff changeset
232 else
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diff changeset
233 {
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diff changeset
234 temp.push_back(inbuffer[i]);
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235 }
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diff changeset
236 }
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diff changeset
237
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238 // Delta encoding pass
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diff changeset
239 uint16_t delta = 0;
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240 output.clear();
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241 output.reserve(temp.size());
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242 for (size_t i = 0; i < temp.size(); i++)
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diff changeset
243 {
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diff changeset
244 uint16_t value;
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245
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246 if (temp[i] == 0x5a)
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247 {
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248 uint16_t v1 = temp[i + 1];
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249 uint16_t v2 = temp[i + 2];
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250 value = (v2 << 8) + v1;
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diff changeset
251 i += 2;
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diff changeset
252 }
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diff changeset
253 else
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diff changeset
254 {
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255 value = delta + (int8_t) temp[i];
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256 }
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diff changeset
257
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diff changeset
258 output.push_back(value & 0xff);
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diff changeset
259 output.push_back(value >> 8);
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260 delta = value;
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diff changeset
261 }
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diff changeset
262
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diff changeset
263 if (output.size() % 2)
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diff changeset
264 {
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diff changeset
265 output.resize(output.size() - 1);
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266 }
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diff changeset
267
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268 return true;
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diff changeset
269 }
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diff changeset
270
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diff changeset
271
845
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parents:
diff changeset
272 void DicomImageDecoder::SetupImageBuffer(ImageBuffer& target,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 DcmDataset& dataset)
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parents:
diff changeset
274 {
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diff changeset
275 OFString value;
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parents:
diff changeset
276
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diff changeset
277 if (!dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_COLUMNS), value).good())
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 {
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parents:
diff changeset
279 throw OrthancException(ErrorCode_BadFileFormat);
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parents:
diff changeset
280 }
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parents:
diff changeset
281
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parents:
diff changeset
282 unsigned int width = boost::lexical_cast<unsigned int>(value.c_str());
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parents:
diff changeset
283
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 if (!dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_ROWS), value).good())
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 {
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parents:
diff changeset
286 throw OrthancException(ErrorCode_BadFileFormat);
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parents:
diff changeset
287 }
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parents:
diff changeset
288
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parents:
diff changeset
289 unsigned int height = boost::lexical_cast<unsigned int>(value.c_str());
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parents:
diff changeset
290
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parents:
diff changeset
291 if (!dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_BITS_STORED), value).good())
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292 {
48016722c770 refactoring
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parents:
diff changeset
293 throw OrthancException(ErrorCode_BadFileFormat);
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parents:
diff changeset
294 }
48016722c770 refactoring
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parents:
diff changeset
295
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 unsigned int bitsStored = boost::lexical_cast<unsigned int>(value.c_str());
48016722c770 refactoring
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parents:
diff changeset
297
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parents:
diff changeset
298 if (!dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_REPRESENTATION), value).good())
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parents:
diff changeset
299 {
48016722c770 refactoring
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parents:
diff changeset
300 throw OrthancException(ErrorCode_BadFileFormat);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 bool isSigned = (boost::lexical_cast<unsigned int>(value.c_str()) != 0);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
305 unsigned int samplesPerPixel = 1; // By default
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306 if (dataset.findAndGetOFString(ToDcmtkBridge::Convert(DICOM_TAG_SAMPLES_PER_PIXEL), value).good())
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
307 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308 samplesPerPixel = boost::lexical_cast<unsigned int>(value.c_str());
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 target.SetHeight(height);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312 target.SetWidth(width);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 if (bitsStored == 8 && samplesPerPixel == 1 && !isSigned)
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
315 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 target.SetFormat(PixelFormat_Grayscale8);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 else if (bitsStored == 8 && samplesPerPixel == 3 && !isSigned)
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 target.SetFormat(PixelFormat_RGB24);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 }
850
9ee2e7a5efaf support of JPEG images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 847
diff changeset
322 else if (bitsStored >= 9 && bitsStored <= 16 && samplesPerPixel == 1 && !isSigned)
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 target.SetFormat(PixelFormat_Grayscale16);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 }
850
9ee2e7a5efaf support of JPEG images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 847
diff changeset
326 else if (bitsStored >= 9 && bitsStored <= 16 && samplesPerPixel == 1 && isSigned)
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 target.SetFormat(PixelFormat_SignedGrayscale16);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 else
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 {
850
9ee2e7a5efaf support of JPEG images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 847
diff changeset
332 LOG(WARNING) << "Unsupported DICOM image: " << bitsStored << "bpp, "
9ee2e7a5efaf support of JPEG images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 847
diff changeset
333 << samplesPerPixel << " channels, " << (isSigned ? "signed" : "unsigned");
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 throw OrthancException(ErrorCode_NotImplemented);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
338
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
339 bool DicomImageDecoder::IsJpegLossless(const DcmDataset& dataset)
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
340 {
851
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 850
diff changeset
341 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 return (dataset.getOriginalXfer() == EXS_JPEGLSLossless ||
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
343 dataset.getOriginalXfer() == EXS_JPEGLSLossy);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
344 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
347 bool DicomImageDecoder::IsUncompressedImage(const DcmDataset& dataset)
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
348 {
851
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 850
diff changeset
349 // http://support.dcmtk.org/docs/dcxfer_8h-source.html
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
350 return (dataset.getOriginalXfer() == EXS_Unknown ||
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
351 dataset.getOriginalXfer() == EXS_LittleEndianImplicit ||
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
352 dataset.getOriginalXfer() == EXS_BigEndianImplicit ||
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
353 dataset.getOriginalXfer() == EXS_LittleEndianExplicit ||
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
354 dataset.getOriginalXfer() == EXS_BigEndianExplicit);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
355 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
356
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
357
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
358 template <typename PixelType>
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
359 static void CopyPixels(ImageAccessor& target,
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
360 const DicomIntegerPixelAccessor& source)
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
361 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
362 const PixelType minValue = std::numeric_limits<PixelType>::min();
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
363 const PixelType maxValue = std::numeric_limits<PixelType>::max();
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
364
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
365 for (unsigned int y = 0; y < source.GetHeight(); y++)
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
366 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
367 PixelType* pixel = reinterpret_cast<PixelType*>(target.GetRow(y));
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
368 for (unsigned int x = 0; x < source.GetWidth(); x++)
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
369 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
370 for (unsigned int c = 0; c < source.GetChannelCount(); c++, pixel++)
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
371 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
372 int32_t v = source.GetValue(x, y, c);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
373 if (v < static_cast<int32_t>(minValue))
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
374 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
375 *pixel = minValue;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
376 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
377 else if (v > static_cast<int32_t>(maxValue))
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
378 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
379 *pixel = maxValue;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
380 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
381 else
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
382 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
383 *pixel = static_cast<PixelType>(v);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
384 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
385 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
386 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
387 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
388 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
389
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
390
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
391 void DicomImageDecoder::DecodeUncompressedImage(ImageBuffer& target,
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
392 DcmDataset& dataset,
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
393 unsigned int frame)
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
394 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
395 if (!IsUncompressedImage(dataset))
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
396 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
397 throw OrthancException(ErrorCode_BadParameterType);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
398 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
399
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
400 DecodeUncompressedImageInternal(target, dataset, frame);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
401 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
402
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
403
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
404 void DicomImageDecoder::DecodeUncompressedImageInternal(ImageBuffer& target,
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
405 DcmDataset& dataset,
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
406 unsigned int frame)
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
407 {
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
408 ImageSource source;
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
409 source.Setup(dataset, frame);
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
410
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
411 /**
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
412 * Resize the target image, with some sanity checks.
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
413 **/
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
414
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
415 SetupImageBuffer(target, dataset);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
416
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
417 if (target.GetWidth() != target.GetWidth() ||
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
418 target.GetHeight() != target.GetHeight())
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
419 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
420 throw OrthancException(ErrorCode_InternalError);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
421 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
422
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
423 bool ok;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
424 switch (target.GetFormat())
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
425 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
426 case PixelFormat_RGB24:
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
427 ok = source.GetChannelCount() == 3;
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
428 break;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
429
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
430 case PixelFormat_RGBA32:
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
431 ok = source.GetChannelCount() == 4;
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
432 break;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
433
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
434 case PixelFormat_Grayscale8:
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
435 case PixelFormat_Grayscale16:
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
436 case PixelFormat_SignedGrayscale16:
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
437 ok = source.GetChannelCount() == 1;
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
438 break;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
439
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
440 default:
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
441 ok = false;
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
442 break;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
443 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
444
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
445 if (!ok)
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
446 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
447 throw OrthancException(ErrorCode_InternalError);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
448 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
449
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
450
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
451 /**
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
452 * Loop over the DICOM buffer, storing its value into the target
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
453 * image.
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
454 **/
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
455
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
456 ImageAccessor accessor(target.GetAccessor());
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
457
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
458 switch (target.GetFormat())
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
459 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
460 case PixelFormat_RGB24:
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
461 case PixelFormat_RGBA32:
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
462 case PixelFormat_Grayscale8:
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
463 CopyPixels<uint8_t>(accessor, source.GetAccessor());
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
464 break;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
465
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
466 case PixelFormat_Grayscale16:
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
467 CopyPixels<uint16_t>(accessor, source.GetAccessor());
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
468 break;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
469
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
470 case PixelFormat_SignedGrayscale16:
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
471 CopyPixels<int16_t>(accessor, source.GetAccessor());
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
472 break;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
473
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
474 default:
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
475 throw OrthancException(ErrorCode_InternalError);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
476 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
477 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
478
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
479
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 #if ORTHANC_JPEG_LOSSLESS_ENABLED == 1
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481 void DicomImageDecoder::DecodeJpegLossless(ImageBuffer& target,
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
482 DcmDataset& dataset,
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
483 unsigned int frame)
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485 if (!IsJpegLossless(dataset))
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 throw OrthancException(ErrorCode_BadParameterType);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 DcmElement *element = NULL;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
491 if (!dataset.findAndGetElement(ToDcmtkBridge::Convert(DICOM_TAG_PIXEL_DATA), element).good())
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
492 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
493 throw OrthancException(ErrorCode_BadFileFormat);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
494 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
495
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
496 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 DcmPixelSequence* pixelSequence = NULL;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498 if (!pixelData.getEncapsulatedRepresentation
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
499 (dataset.getOriginalXfer(), NULL, pixelSequence).good())
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
500 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
501 throw OrthancException(ErrorCode_BadFileFormat);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
503
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
504 SetupImageBuffer(target, dataset);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
505
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 ImageAccessor accessor(target.GetAccessor());
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 /**
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
509 * The "DJLSLosslessDecoder" and "DJLSNearLosslessDecoder" in DCMTK
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
510 * are exactly the same, except for the "supportedTransferSyntax()"
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
511 * virtual function.
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
512 * http://support.dcmtk.org/docs/classDJLSDecoderBase.html
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
513 **/
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
514
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
515 DJLSLosslessDecoder decoder; DJLSCodecParameter parameters;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
516 //DJLSNearLosslessDecoder decoder; DJLSCodecParameter parameters;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
517
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
518 Uint32 startFragment = 0; // Default
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
519 OFString decompressedColorModel; // Out
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
520 DJ_RPLossless representationParameter;
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
521 OFCondition c = decoder.decodeFrame(&representationParameter, pixelSequence, &parameters,
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
522 &dataset, frame, startFragment, accessor.GetBuffer(),
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
523 accessor.GetSize(), decompressedColorModel);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
524
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
525 if (!c.good())
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
526 {
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
527 throw OrthancException(ErrorCode_InternalError);
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
528 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
529 }
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
530 #endif
846
715ab7674993 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 845
diff changeset
531
715ab7674993 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 845
diff changeset
532
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
533
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
534 bool DicomImageDecoder::Decode(ImageBuffer& target,
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
535 DcmDataset& dataset,
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
536 unsigned int frame)
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
537 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
538 if (IsUncompressedImage(dataset))
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
539 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
540 DecodeUncompressedImage(target, dataset, frame);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
541 return true;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
542 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
543
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
544
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
545 #if ORTHANC_JPEG_LOSSLESS_ENABLED == 1
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
546 if (IsJpegLossless(dataset))
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
547 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
548 LOG(INFO) << "Decoding a JPEG-LS image";
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
549 DecodeJpegLossless(target, dataset, frame);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
550 return true;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
551 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
552 #endif
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
553
852
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
554
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
555 #if ORTHANC_JPEG_ENABLED == 1
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
556 // TODO Implement this part to speed up JPEG decompression
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
557 #endif
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
558
5944b8b80842 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 851
diff changeset
559
847
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
560 /**
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
561 * This DICOM image format is not natively supported by
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
562 * Orthanc. As a last resort, try and decode it through
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
563 * DCMTK. This will result in higher memory consumption. This is
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
564 * actually the second example of the following page:
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
565 * http://support.dcmtk.org/docs/mod_dcmjpeg.html#Examples
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
566 **/
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
567
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
568 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
569 LOG(INFO) << "Using DCMTK to decode a compressed image";
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
570
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
571 std::auto_ptr<DcmDataset> converted(dynamic_cast<DcmDataset*>(dataset.clone()));
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
572 converted->chooseRepresentation(EXS_LittleEndianExplicit, NULL);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
573
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
574 if (converted->canWriteXfer(EXS_LittleEndianExplicit))
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
575 {
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
576 DecodeUncompressedImageInternal(target, *converted, frame);
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
577 return true;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
578 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
579 }
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
580
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
581 return false;
03ea55da7429 fully functional JPEG-LS conversion
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 846
diff changeset
582 }
845
48016722c770 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
583 }