Mercurial > hg > orthanc
annotate OrthancServer/FromDcmtkBridge.cpp @ 2167:aa2915963531
"Folders" sub-configuration in ServeFolders
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 22 Nov 2016 14:19:42 +0100 |
parents | cbebc5d072b0 |
children | 84d1d392a9ab |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
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32 |
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33 #include "PrecompiledHeadersServer.h" |
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34 |
71 | 35 #ifndef NOMINMAX |
36 #define NOMINMAX | |
37 #endif | |
0 | 38 |
39 #include "FromDcmtkBridge.h" | |
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40 #include "ToDcmtkBridge.h" |
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41 #include "../Core/Logging.h" |
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42 #include "../Core/Toolbox.h" |
2142 | 43 #include "../Core/TemporaryFile.h" |
62 | 44 #include "../Core/OrthancException.h" |
0 | 45 |
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46 #include <list> |
71 | 47 #include <limits> |
48 | |
0 | 49 #include <boost/lexical_cast.hpp> |
1656 | 50 #include <boost/filesystem.hpp> |
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51 #include <boost/algorithm/string/predicate.hpp> |
0 | 52 |
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53 #include <dcmtk/dcmdata/dcdeftag.h> |
0 | 54 #include <dcmtk/dcmdata/dcdicent.h> |
55 #include <dcmtk/dcmdata/dcdict.h> | |
56 #include <dcmtk/dcmdata/dcfilefo.h> | |
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57 #include <dcmtk/dcmdata/dcostrmb.h> |
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58 #include <dcmtk/dcmdata/dcpixel.h> |
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59 #include <dcmtk/dcmdata/dcuid.h> |
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60 #include <dcmtk/dcmdata/dcistrmb.h> |
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61 |
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62 #include <dcmtk/dcmdata/dcvrae.h> |
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63 #include <dcmtk/dcmdata/dcvras.h> |
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64 #include <dcmtk/dcmdata/dcvrat.h> |
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65 #include <dcmtk/dcmdata/dcvrcs.h> |
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66 #include <dcmtk/dcmdata/dcvrda.h> |
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67 #include <dcmtk/dcmdata/dcvrds.h> |
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68 #include <dcmtk/dcmdata/dcvrdt.h> |
0 | 69 #include <dcmtk/dcmdata/dcvrfd.h> |
70 #include <dcmtk/dcmdata/dcvrfl.h> | |
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71 #include <dcmtk/dcmdata/dcvris.h> |
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72 #include <dcmtk/dcmdata/dcvrlo.h> |
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73 #include <dcmtk/dcmdata/dcvrlt.h> |
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74 #include <dcmtk/dcmdata/dcvrpn.h> |
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75 #include <dcmtk/dcmdata/dcvrsh.h> |
0 | 76 #include <dcmtk/dcmdata/dcvrsl.h> |
77 #include <dcmtk/dcmdata/dcvrss.h> | |
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78 #include <dcmtk/dcmdata/dcvrst.h> |
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79 #include <dcmtk/dcmdata/dcvrtm.h> |
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80 #include <dcmtk/dcmdata/dcvrui.h> |
0 | 81 #include <dcmtk/dcmdata/dcvrul.h> |
82 #include <dcmtk/dcmdata/dcvrus.h> | |
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83 #include <dcmtk/dcmdata/dcvrut.h> |
0 | 84 |
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85 |
1930 | 86 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
87 #include <EmbeddedResources.h> | |
88 #endif | |
89 | |
90 | |
62 | 91 namespace Orthanc |
0 | 92 { |
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93 static inline uint16_t GetCharValue(char c) |
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94 { |
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95 if (c >= '0' && c <= '9') |
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96 return c - '0'; |
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97 else if (c >= 'a' && c <= 'f') |
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98 return c - 'a' + 10; |
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99 else if (c >= 'A' && c <= 'F') |
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100 return c - 'A' + 10; |
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101 else |
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102 return 0; |
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103 } |
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104 |
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105 static inline uint16_t GetTagValue(const char* c) |
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106 { |
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107 return ((GetCharValue(c[0]) << 12) + |
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108 (GetCharValue(c[1]) << 8) + |
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109 (GetCharValue(c[2]) << 4) + |
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110 GetCharValue(c[3])); |
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111 } |
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112 |
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113 |
1656 | 114 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 |
115 static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary, | |
116 EmbeddedResources::FileResourceId resource) | |
117 { | |
2017 | 118 std::string content; |
119 EmbeddedResources::GetFileResource(content, resource); | |
1656 | 120 |
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121 TemporaryFile tmp; |
2017 | 122 tmp.Write(content); |
1656 | 123 |
124 if (!dictionary.loadDictionary(tmp.GetPath().c_str())) | |
125 { | |
2017 | 126 LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that " |
127 << "your TEMP directory does not contain special characters."; | |
1656 | 128 throw OrthancException(ErrorCode_InternalError); |
129 } | |
130 } | |
131 | |
132 #else | |
133 static void LoadExternalDictionary(DcmDataDictionary& dictionary, | |
134 const std::string& directory, | |
135 const std::string& filename) | |
136 { | |
137 boost::filesystem::path p = directory; | |
138 p = p / filename; | |
139 | |
140 LOG(WARNING) << "Loading the external DICOM dictionary " << p; | |
141 | |
142 if (!dictionary.loadDictionary(p.string().c_str())) | |
143 { | |
144 throw OrthancException(ErrorCode_InternalError); | |
145 } | |
146 } | |
147 #endif | |
148 | |
149 | |
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150 namespace |
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151 { |
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152 class DictionaryLocker |
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153 { |
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154 private: |
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155 DcmDataDictionary& dictionary_; |
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156 |
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157 public: |
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158 DictionaryLocker() : dictionary_(dcmDataDict.wrlock()) |
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159 { |
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160 } |
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161 |
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162 ~DictionaryLocker() |
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163 { |
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164 dcmDataDict.unlock(); |
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165 } |
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166 |
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167 DcmDataDictionary& operator*() |
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168 { |
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169 return dictionary_; |
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170 } |
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171 |
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172 DcmDataDictionary* operator->() |
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173 { |
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174 return &dictionary_; |
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175 } |
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176 }; |
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177 } |
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178 |
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179 |
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180 void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary) |
1656 | 181 { |
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182 { |
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183 DictionaryLocker locker; |
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184 |
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185 locker->clear(); |
1656 | 186 |
187 #if DCMTK_USE_EMBEDDED_DICTIONARIES == 1 | |
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188 LOG(WARNING) << "Loading the embedded dictionaries"; |
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189 /** |
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190 * Do not load DICONDE dictionary, it breaks the other tags. The |
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191 * command "strace storescu 2>&1 |grep dic" shows that DICONDE |
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192 * dictionary is not loaded by storescu. |
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193 **/ |
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194 //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE); |
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196 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM); |
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197 |
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198 if (loadPrivateDictionary) |
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199 { |
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200 LOG(INFO) << "Loading the embedded dictionary of private tags"; |
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201 LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE); |
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202 } |
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203 else |
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204 { |
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205 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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206 } |
1656 | 207 |
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208 #elif defined(__linux__) || defined(__FreeBSD_kernel__) |
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209 std::string path = DCMTK_DICTIONARY_DIR; |
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211 const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE); |
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212 if (env != NULL) |
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213 { |
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214 path = std::string(env); |
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215 } |
1656 | 216 |
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217 LoadExternalDictionary(*locker, path, "dicom.dic"); |
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218 |
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219 if (loadPrivateDictionary) |
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220 { |
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221 LoadExternalDictionary(*locker, path, "private.dic"); |
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222 } |
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223 else |
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224 { |
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225 LOG(INFO) << "The dictionary of private tags has not been loaded"; |
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226 } |
1656 | 227 |
228 #else | |
229 #error Support your platform here | |
230 #endif | |
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231 } |
1656 | 232 |
233 /* make sure data dictionary is loaded */ | |
234 if (!dcmDataDict.isDictionaryLoaded()) | |
235 { | |
236 LOG(ERROR) << "No DICOM dictionary loaded, check environment variable: " << DCM_DICT_ENVIRONMENT_VARIABLE; | |
237 throw OrthancException(ErrorCode_InternalError); | |
238 } | |
239 | |
240 { | |
241 // Test the dictionary with a simple DICOM tag | |
242 DcmTag key(0x0010, 0x1030); // This is PatientWeight | |
243 if (key.getEVR() != EVR_DS) | |
244 { | |
245 LOG(ERROR) << "The DICOM dictionary has not been correctly read"; | |
246 throw OrthancException(ErrorCode_InternalError); | |
247 } | |
248 } | |
249 } | |
250 | |
251 | |
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252 void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag, |
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253 ValueRepresentation vr, |
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254 const std::string& name, |
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255 unsigned int minMultiplicity, |
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256 unsigned int maxMultiplicity, |
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257 const std::string& privateCreator) |
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258 { |
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259 if (minMultiplicity < 1) |
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260 { |
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261 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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262 } |
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263 |
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264 bool arbitrary = false; |
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265 if (maxMultiplicity == 0) |
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266 { |
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267 maxMultiplicity = DcmVariableVM; |
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268 arbitrary = true; |
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269 } |
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270 else if (maxMultiplicity < minMultiplicity) |
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271 { |
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272 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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273 } |
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274 |
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275 DcmEVR evr = ToDcmtkBridge::Convert(vr); |
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276 |
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277 LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " " |
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278 << name << " (multiplicity: " << minMultiplicity << "-" |
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279 << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")"; |
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280 |
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281 std::auto_ptr<DcmDictEntry> entry; |
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282 if (privateCreator.empty()) |
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283 { |
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284 if (tag.GetGroup() % 2 == 1) |
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285 { |
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286 char buf[128]; |
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287 sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), " |
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288 "but no private creator was associated with it", |
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289 tag.GetGroup(), tag.GetElement()); |
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290 LOG(WARNING) << buf; |
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291 } |
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292 |
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293 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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294 tag.GetElement(), |
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295 evr, name.c_str(), |
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296 static_cast<int>(minMultiplicity), |
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297 static_cast<int>(maxMultiplicity), |
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298 NULL /* version */, |
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299 OFTrue /* doCopyString */, |
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300 NULL /* private creator */)); |
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301 } |
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302 else |
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303 { |
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304 // "Private Data Elements have an odd Group Number that is not |
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305 // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or |
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306 // (FFFF,eeee)." |
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307 if (tag.GetGroup() % 2 == 0 /* even */ || |
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308 tag.GetGroup() == 0x0001 || |
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309 tag.GetGroup() == 0x0003 || |
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310 tag.GetGroup() == 0x0005 || |
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311 tag.GetGroup() == 0x0007 || |
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312 tag.GetGroup() == 0xffff) |
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313 { |
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314 char buf[128]; |
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315 sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009", |
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316 tag.GetGroup(), tag.GetElement()); |
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317 LOG(ERROR) << buf; |
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318 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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319 } |
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320 |
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321 entry.reset(new DcmDictEntry(tag.GetGroup(), |
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322 tag.GetElement(), |
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323 evr, name.c_str(), |
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324 static_cast<int>(minMultiplicity), |
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325 static_cast<int>(maxMultiplicity), |
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326 "private" /* version */, |
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327 OFTrue /* doCopyString */, |
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328 privateCreator.c_str())); |
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329 } |
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330 |
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331 entry->setGroupRangeRestriction(DcmDictRange_Unspecified); |
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332 entry->setElementRangeRestriction(DcmDictRange_Unspecified); |
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333 |
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334 { |
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335 DictionaryLocker locker; |
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336 |
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337 if (locker->findEntry(name.c_str())) |
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338 { |
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339 LOG(ERROR) << "Cannot register two tags with the same symbolic name \"" << name << "\""; |
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340 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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341 } |
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342 |
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343 locker->addEntry(entry.release()); |
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344 } |
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345 } |
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346 |
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347 |
1936 | 348 Encoding FromDcmtkBridge::DetectEncoding(DcmItem& dataset, |
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349 Encoding defaultEncoding) |
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350 { |
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351 Encoding encoding = defaultEncoding; |
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352 |
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353 OFString tmp; |
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354 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good()) |
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355 { |
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356 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str())); |
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357 |
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358 if (characterSet.empty()) |
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359 { |
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360 // Empty specific character set tag: Use the default encoding |
1087 | 361 } |
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362 else if (GetDicomEncoding(encoding, characterSet.c_str())) |
1087 | 363 { |
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364 // The specific character set is supported by the Orthanc core |
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366 else |
1087 | 367 { |
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368 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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369 << ", fallback to ASCII (remove all special characters)"; |
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370 encoding = Encoding_Ascii; |
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371 } |
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372 } |
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373 else |
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374 { |
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375 // No specific character set tag: Use the default encoding |
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376 } |
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377 |
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378 return encoding; |
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379 } |
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380 |
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381 |
2125 | 382 void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, |
383 DcmItem& dataset, | |
384 unsigned int maxStringLength, | |
385 Encoding defaultEncoding) | |
0 | 386 { |
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387 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
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388 |
0 | 389 target.Clear(); |
390 for (unsigned long i = 0; i < dataset.card(); i++) | |
391 { | |
392 DcmElement* element = dataset.getElement(i); | |
393 if (element && element->isLeaf()) | |
394 { | |
395 target.SetValue(element->getTag().getGTag(), | |
396 element->getTag().getETag(), | |
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397 ConvertLeafElement(*element, DicomToJsonFlags_Default, maxStringLength, encoding)); |
0 | 398 } |
399 } | |
400 } | |
401 | |
402 | |
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403 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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404 { |
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405 return DicomTag(tag.getGTag(), tag.getETag()); |
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406 } |
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407 |
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408 |
0 | 409 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
410 { | |
411 return DicomTag(element.getGTag(), element.getETag()); | |
412 } | |
413 | |
414 | |
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415 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
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416 DicomToJsonFlags flags, |
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417 unsigned int maxStringLength, |
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418 Encoding encoding) |
0 | 419 { |
420 if (!element.isLeaf()) | |
421 { | |
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422 // This function is only applicable to leaf elements |
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423 throw OrthancException(ErrorCode_BadParameterType); |
0 | 424 } |
425 | |
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426 char *c = NULL; |
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427 if (element.isaString() && |
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428 element.getString(c).good()) |
0 | 429 { |
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430 if (c == NULL) // This case corresponds to the empty string |
0 | 431 { |
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432 return new DicomValue("", false); |
0 | 433 } |
434 else | |
435 { | |
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436 std::string s(c); |
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437 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding); |
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438 |
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439 if (maxStringLength != 0 && |
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440 utf8.size() > maxStringLength) |
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441 { |
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442 return new DicomValue; // Too long, create a NULL value |
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443 } |
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444 else |
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445 { |
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446 return new DicomValue(utf8, false); |
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447 } |
0 | 448 } |
449 } | |
450 | |
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451 |
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452 if (element.getVR() == EVR_UN) |
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453 { |
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454 // Unknown value representation: Lookup in the dictionary. This |
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455 // is notably the case for private tags registered with the |
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456 // "Dictionary" configuration option. |
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457 DictionaryLocker locker; |
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458 |
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459 const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), |
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460 element.getTag().getPrivateCreator()); |
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461 if (entry != NULL && |
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462 entry->getVR().isaString()) |
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463 { |
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464 Uint8* data = NULL; |
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465 |
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466 // At (*), we do not try and convert to UTF-8, as nothing says |
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467 // the encoding of the private tag is the same as that of the |
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468 // remaining of the DICOM dataset. Only go for ASCII strings. |
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469 |
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470 if (element.getUint8Array(data) == EC_Normal && |
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471 Toolbox::IsAsciiString(data, element.getLength())) // (*) |
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472 { |
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473 if (data == NULL) |
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474 { |
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475 return new DicomValue("", false); // Empty string |
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476 } |
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477 else if (maxStringLength != 0 && |
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478 element.getLength() > maxStringLength) |
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479 { |
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480 return new DicomValue; // Too long, create a NULL value |
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481 } |
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482 else |
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483 { |
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484 std::string s(reinterpret_cast<const char*>(data), element.getLength()); |
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485 return new DicomValue(s, false); |
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486 } |
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487 } |
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488 } |
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489 } |
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490 |
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491 |
0 | 492 try |
493 { | |
494 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
495 switch (element.getVR()) | |
496 { | |
497 | |
498 /** | |
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499 * Deal with binary data (including PixelData). |
0 | 500 **/ |
306
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501 |
302
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502 case EVR_OB: // other byte |
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503 case EVR_OF: // other float |
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504 case EVR_OW: // other word |
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505 case EVR_UN: // unknown value representation |
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506 case EVR_ox: // OB or OW depending on context |
306
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507 case EVR_DS: // decimal string |
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508 case EVR_IS: // integer string |
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509 case EVR_AS: // age string |
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510 case EVR_DA: // date string |
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511 case EVR_DT: // date time string |
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512 case EVR_TM: // time string |
302
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513 case EVR_AE: // application entity title |
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514 case EVR_CS: // code string |
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515 case EVR_SH: // short string |
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516 case EVR_LO: // long string |
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517 case EVR_ST: // short text |
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518 case EVR_LT: // long text |
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519 case EVR_UT: // unlimited text |
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520 case EVR_PN: // person name |
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521 case EVR_UI: // unique identifier |
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522 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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ParsedDicomFile::CreateFromJson
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523 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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524 { |
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525 if (!(flags & DicomToJsonFlags_ConvertBinaryToNull)) |
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ParsedDicomFile::CreateFromJson
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|
526 { |
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ParsedDicomFile::CreateFromJson
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527 Uint8* data = NULL; |
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ParsedDicomFile::CreateFromJson
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528 if (element.getUint8Array(data) == EC_Normal) |
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529 { |
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530 return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true); |
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531 } |
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532 } |
0 | 533 |
1818
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534 return new DicomValue; |
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535 } |
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|
536 |
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|
537 /** |
2115
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diff
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|
538 * Numeric types |
1818
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|
539 **/ |
0 | 540 |
302
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541 case EVR_SL: // signed long |
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542 { |
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543 Sint32 f; |
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544 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good()) |
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|
545 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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546 else |
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547 return new DicomValue; |
302
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|
548 } |
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|
549 |
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|
550 case EVR_SS: // signed short |
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|
551 { |
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|
552 Sint16 f; |
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|
553 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good()) |
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|
554 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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|
555 else |
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|
556 return new DicomValue; |
302
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|
557 } |
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|
558 |
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559 case EVR_UL: // unsigned long |
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560 { |
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561 Uint32 f; |
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|
562 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good()) |
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563 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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|
564 else |
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|
565 return new DicomValue; |
302
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|
566 } |
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|
567 |
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568 case EVR_US: // unsigned short |
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|
569 { |
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|
570 Uint16 f; |
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|
571 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good()) |
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572 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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|
573 else |
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|
574 return new DicomValue; |
302
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|
575 } |
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|
576 |
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577 case EVR_FL: // float single-precision |
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|
578 { |
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|
579 Float32 f; |
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|
580 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good()) |
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|
581 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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|
582 else |
1737
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583 return new DicomValue; |
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584 } |
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585 |
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586 case EVR_FD: // float double-precision |
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587 { |
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588 Float64 f; |
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589 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good()) |
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590 return new DicomValue(boost::lexical_cast<std::string>(f), false); |
302
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591 else |
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592 return new DicomValue; |
1131 | 593 } |
594 | |
595 | |
596 /** | |
597 * Attribute tag. | |
598 **/ | |
599 | |
600 case EVR_AT: | |
601 { | |
1147 | 602 DcmTagKey tag; |
603 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
604 { | |
605 DicomTag t(tag.getGroup(), tag.getElement()); | |
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606 return new DicomValue(t.Format(), false); |
1147 | 607 } |
1131 | 608 else |
1147 | 609 { |
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610 return new DicomValue; |
1147 | 611 } |
302
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612 } |
0 | 613 |
614 | |
615 /** | |
302
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616 * Sequence types, should never occur at this point because of |
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617 * "element.isLeaf()". |
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618 **/ |
0 | 619 |
302
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620 case EVR_SQ: // sequence of items |
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621 return new DicomValue; |
0 | 622 |
623 | |
302
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624 /** |
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625 * Internal to DCMTK. |
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626 **/ |
0 | 627 |
302
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628 case EVR_xs: // SS or US depending on context |
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629 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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630 case EVR_na: // na="not applicable", for data which has no VR |
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631 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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632 case EVR_item: // used internally for items |
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633 case EVR_metainfo: // used internally for meta info datasets |
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634 case EVR_dataset: // used internally for datasets |
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635 case EVR_fileFormat: // used internally for DICOM files |
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636 case EVR_dicomDir: // used internally for DICOMDIR objects |
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637 case EVR_dirRecord: // used internally for DICOMDIR records |
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638 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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639 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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640 case EVR_PixelData: // used internally for uncompressed pixeld data |
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641 case EVR_OverlayData: // used internally for overlay data |
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642 return new DicomValue; |
0 | 643 |
644 | |
302
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645 /** |
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646 * Default case. |
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647 **/ |
0 | 648 |
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649 default: |
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650 return new DicomValue; |
0 | 651 } |
652 } | |
653 catch (boost::bad_lexical_cast) | |
654 { | |
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655 return new DicomValue; |
0 | 656 } |
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657 catch (std::bad_cast) |
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658 { |
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659 return new DicomValue; |
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660 } |
0 | 661 } |
662 | |
663 | |
1687 | 664 static Json::Value& PrepareNode(Json::Value& parent, |
665 DcmElement& element, | |
666 DicomToJsonFormat format) | |
0 | 667 { |
1687 | 668 assert(parent.type() == Json::objectValue); |
0 | 669 |
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670 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
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671 const std::string formattedTag = tag.Format(); |
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672 |
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673 if (format == DicomToJsonFormat_Short) |
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674 { |
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675 parent[formattedTag] = Json::nullValue; |
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676 return parent[formattedTag]; |
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677 } |
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678 |
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679 // This code gives access to the name of the private tags |
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680 std::string tagName = FromDcmtkBridge::GetTagName(element); |
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681 |
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682 switch (format) |
0 | 683 { |
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684 case DicomToJsonFormat_Human: |
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685 parent[tagName] = Json::nullValue; |
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686 return parent[tagName]; |
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687 |
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688 case DicomToJsonFormat_Full: |
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689 { |
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690 parent[formattedTag] = Json::objectValue; |
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691 Json::Value& node = parent[formattedTag]; |
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692 |
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693 if (element.isLeaf()) |
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694 { |
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695 node["Name"] = tagName; |
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696 |
2076 | 697 if (element.getTag().getPrivateCreator() != NULL) |
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698 { |
2076 | 699 node["PrivateCreator"] = element.getTag().getPrivateCreator(); |
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700 } |
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701 |
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702 return node; |
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703 } |
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704 else |
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705 { |
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706 node["Name"] = tagName; |
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707 node["Type"] = "Sequence"; |
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708 node["Value"] = Json::nullValue; |
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709 return node["Value"]; |
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710 } |
306
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711 } |
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712 |
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713 default: |
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714 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 715 } |
716 } | |
717 | |
718 | |
719 static void LeafValueToJson(Json::Value& target, | |
720 const DicomValue& value, | |
721 DicomToJsonFormat format, | |
1738
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722 DicomToJsonFlags flags, |
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723 unsigned int maxStringLength) |
1687 | 724 { |
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725 Json::Value* targetValue = NULL; |
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726 Json::Value* targetType = NULL; |
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727 |
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728 switch (format) |
1687 | 729 { |
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730 case DicomToJsonFormat_Short: |
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731 case DicomToJsonFormat_Human: |
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732 { |
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733 assert(target.type() == Json::nullValue); |
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734 targetValue = ⌖ |
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735 break; |
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736 } |
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737 |
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738 case DicomToJsonFormat_Full: |
0 | 739 { |
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740 assert(target.type() == Json::objectValue); |
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741 target["Value"] = Json::nullValue; |
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742 target["Type"] = Json::nullValue; |
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743 targetType = &target["Type"]; |
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DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
744 targetValue = &target["Value"]; |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
745 break; |
0 | 746 } |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
747 |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
748 default: |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
749 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1687 | 750 } |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
751 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
752 assert(targetValue != NULL); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
753 assert(targetValue->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
754 assert(targetType == NULL || targetType->type() == Json::nullValue); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
755 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
756 if (value.IsNull()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
757 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
758 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
759 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
760 *targetType = "Null"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
761 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
762 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
763 else if (value.IsBinary()) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
764 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
765 if (flags & DicomToJsonFlags_ConvertBinaryToAscii) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
766 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
767 *targetValue = Toolbox::ConvertToAscii(value.GetContent()); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
768 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
769 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
770 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
771 std::string s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
772 value.FormatDataUriScheme(s); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
773 *targetValue = s; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
774 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
775 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
776 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
777 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
778 *targetType = "Binary"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
779 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
780 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
781 else if (maxStringLength == 0 || |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
782 value.GetContent().size() <= maxStringLength) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
783 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
784 *targetValue = value.GetContent(); |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
785 |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
786 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
787 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
788 *targetType = "String"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
789 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
790 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
791 else |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
792 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
793 if (targetType != NULL) |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
794 { |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
795 *targetType = "TooLong"; |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
796 } |
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
797 } |
1687 | 798 } |
35
f6d12037f886
full json vs. simplified json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2
diff
changeset
|
799 |
1687 | 800 |
2126 | 801 void FromDcmtkBridge::ElementToJson(Json::Value& parent, |
802 DcmElement& element, | |
803 DicomToJsonFormat format, | |
804 DicomToJsonFlags flags, | |
805 unsigned int maxStringLength, | |
806 Encoding encoding) | |
1687 | 807 { |
1691 | 808 if (parent.type() == Json::nullValue) |
809 { | |
810 parent = Json::objectValue; | |
811 } | |
812 | |
813 assert(parent.type() == Json::objectValue); | |
1687 | 814 Json::Value& target = PrepareNode(parent, element, format); |
815 | |
816 if (element.isLeaf()) | |
817 { | |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
818 // The "0" below lets "LeafValueToJson()" take care of "TooLong" values |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
819 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element, flags, 0, encoding)); |
1738
15a788a63846
DicomToJsonFlags_IncludeBinary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
820 LeafValueToJson(target, *v, format, flags, maxStringLength); |
0 | 821 } |
822 else | |
823 { | |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
824 assert(target.type() == Json::nullValue); |
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
825 target = Json::arrayValue; |
0 | 826 |
827 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
828 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
1687 | 829 // etc. are not." The following dynamic_cast is thus OK. |
0 | 830 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); |
831 | |
832 for (unsigned long i = 0; i < sequence.card(); i++) | |
833 { | |
834 DcmItem* child = sequence.getItem(i); | |
1687 | 835 Json::Value& v = target.append(Json::objectValue); |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
836 DatasetToJson(v, *child, format, flags, maxStringLength, encoding); |
1687 | 837 } |
0 | 838 } |
839 } | |
840 | |
841 | |
2126 | 842 void FromDcmtkBridge::DatasetToJson(Json::Value& parent, |
843 DcmItem& item, | |
844 DicomToJsonFormat format, | |
845 DicomToJsonFlags flags, | |
846 unsigned int maxStringLength, | |
847 Encoding encoding) | |
1686 | 848 { |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
849 assert(parent.type() == Json::objectValue); |
1686 | 850 |
851 for (unsigned long i = 0; i < item.card(); i++) | |
852 { | |
853 DcmElement* element = item.getElement(i); | |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
854 if (element == NULL) |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
855 { |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
856 throw OrthancException(ErrorCode_InternalError); |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
857 } |
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
858 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
859 DicomTag tag(FromDcmtkBridge::Convert(element->getTag())); |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
860 |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
861 /*element->getTag().isPrivate()*/ |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
862 if (tag.IsPrivate() && |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
863 !(flags & DicomToJsonFlags_IncludePrivateTags)) |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
864 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
865 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
866 } |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
867 |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
868 if (!(flags & DicomToJsonFlags_IncludeUnknownTags)) |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
869 { |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
870 DictionaryLocker locker; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
871 if (locker->findEntry(element->getTag(), NULL) == NULL) |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
872 { |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
873 continue; |
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
874 } |
1735
a001f6226c7c
primitives for flags in dicom-to-json conversions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
875 } |
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
876 |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
877 DcmEVR evr = element->getTag().getEVR(); |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
878 if (evr == EVR_OB || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
879 evr == EVR_OF || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
880 evr == EVR_OW || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
881 evr == EVR_UN || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
882 evr == EVR_ox) |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
883 { |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
884 // This is a binary tag |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
885 if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
886 (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary))) |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
887 { |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
888 continue; |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
889 } |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
890 } |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
891 |
2126 | 892 FromDcmtkBridge::ElementToJson(parent, *element, format, flags, maxStringLength, encoding); |
1686 | 893 } |
894 } | |
895 | |
896 | |
2126 | 897 void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, |
898 DcmDataset& dataset, | |
899 DicomToJsonFormat format, | |
900 DicomToJsonFlags flags, | |
2131 | 901 unsigned int maxStringLength, |
902 Encoding defaultEncoding) | |
0 | 903 { |
2131 | 904 Encoding encoding = DetectEncoding(dataset, defaultEncoding); |
2126 | 905 |
1688
27d70e9ee2e4
DicomToJsonFormat enumeration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1687
diff
changeset
|
906 target = Json::objectValue; |
2126 | 907 DatasetToJson(target, dataset, format, flags, maxStringLength, encoding); |
0 | 908 } |
909 | |
910 | |
2126 | 911 void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, |
912 DcmMetaInfo& dataset, | |
913 DicomToJsonFormat format, | |
914 DicomToJsonFlags flags, | |
915 unsigned int maxStringLength) | |
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
916 { |
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
917 target = Json::objectValue; |
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918 DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii); |
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919 } |
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920 |
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921 |
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922 |
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923 static std::string GetTagNameInternal(DcmTag& tag) |
0 | 924 { |
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925 { |
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926 // Some patches for important tags because of different DICOM |
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927 // dictionaries between DCMTK versions |
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928 DicomTag tmp(tag.getGroup(), tag.getElement()); |
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929 std::string n = tmp.GetMainTagsName(); |
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930 if (n.size() != 0) |
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931 { |
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932 return n; |
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933 } |
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934 // End of patches |
291
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935 } |
106 | 936 |
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937 #if 0 |
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938 // This version explicitly calls the dictionary |
0 | 939 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
940 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
941 | |
306
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942 std::string s(DcmTag_ERROR_TagName); |
0 | 943 if (entry != NULL) |
944 { | |
945 s = std::string(entry->getTagName()); | |
946 } | |
947 | |
948 dcmDataDict.unlock(); | |
949 return s; | |
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950 #else |
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951 const char* name = tag.getTagName(); |
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952 if (name == NULL) |
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953 { |
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954 return DcmTag_ERROR_TagName; |
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955 } |
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956 else |
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957 { |
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958 return std::string(name); |
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959 } |
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960 #endif |
0 | 961 } |
962 | |
963 | |
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964 std::string FromDcmtkBridge::GetTagName(const DicomTag& t, |
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965 const std::string& privateCreator) |
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966 { |
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967 DcmTag tag(t.GetGroup(), t.GetElement()); |
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968 |
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969 if (!privateCreator.empty()) |
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970 { |
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971 tag.setPrivateCreator(privateCreator.c_str()); |
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972 } |
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973 |
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974 return GetTagNameInternal(tag); |
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975 } |
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976 |
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977 |
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978 std::string FromDcmtkBridge::GetTagName(const DcmElement& element) |
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979 { |
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980 // Copy the tag to ensure const-correctness of DcmElement. Note |
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981 // that the private creator information is also copied. |
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982 DcmTag tag(element.getTag()); |
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983 |
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984 return GetTagNameInternal(tag); |
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985 } |
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986 |
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987 |
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988 |
304 | 989 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
0 | 990 { |
304 | 991 if (strlen(name) == 9 && |
992 isxdigit(name[0]) && | |
993 isxdigit(name[1]) && | |
994 isxdigit(name[2]) && | |
995 isxdigit(name[3]) && | |
991
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996 (name[4] == '-' || name[4] == ',') && |
304 | 997 isxdigit(name[5]) && |
998 isxdigit(name[6]) && | |
999 isxdigit(name[7]) && | |
1000 isxdigit(name[8])) | |
1001 { | |
1002 uint16_t group = GetTagValue(name); | |
1003 uint16_t element = GetTagValue(name + 5); | |
1004 return DicomTag(group, element); | |
1005 } | |
1006 | |
1861
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1007 if (strlen(name) == 8 && |
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1008 isxdigit(name[0]) && |
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1009 isxdigit(name[1]) && |
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1010 isxdigit(name[2]) && |
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1011 isxdigit(name[3]) && |
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1012 isxdigit(name[4]) && |
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1013 isxdigit(name[5]) && |
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1014 isxdigit(name[6]) && |
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1015 isxdigit(name[7])) |
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1016 { |
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1017 uint16_t group = GetTagValue(name); |
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1018 uint16_t element = GetTagValue(name + 4); |
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1019 return DicomTag(group, element); |
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1020 } |
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1021 |
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1022 #if 0 |
0 | 1023 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
1024 const DcmDictEntry* entry = dict.findEntry(name); | |
1025 | |
1026 if (entry == NULL) | |
1027 { | |
1028 dcmDataDict.unlock(); | |
1582
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1029 throw OrthancException(ErrorCode_UnknownDicomTag); |
0 | 1030 } |
1031 else | |
1032 { | |
1033 DcmTagKey key = entry->getKey(); | |
1034 DicomTag tag(key.getGroup(), key.getElement()); | |
1035 dcmDataDict.unlock(); | |
1036 return tag; | |
1037 } | |
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1038 #else |
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1039 DcmTag tag; |
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1040 if (DcmTag::findTagFromName(name, tag).good()) |
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1041 { |
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1042 return DicomTag(tag.getGTag(), tag.getETag()); |
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1043 } |
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1044 else |
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1045 { |
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1046 throw OrthancException(ErrorCode_UnknownDicomTag); |
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1047 } |
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1048 #endif |
0 | 1049 } |
1050 | |
1051 | |
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1052 bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag) |
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1053 { |
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1054 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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1055 return tmp.isUnknownVR(); |
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1056 } |
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1057 |
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1058 |
0 | 1059 void FromDcmtkBridge::ToJson(Json::Value& result, |
1368 | 1060 const DicomMap& values, |
1061 bool simplify) | |
0 | 1062 { |
1063 if (result.type() != Json::objectValue) | |
1064 { | |
62 | 1065 throw OrthancException(ErrorCode_BadParameterType); |
0 | 1066 } |
1067 | |
1068 result.clear(); | |
1069 | |
1070 for (DicomMap::Map::const_iterator | |
656 | 1071 it = values.map_.begin(); it != values.map_.end(); ++it) |
0 | 1072 { |
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1073 // TODO Inject PrivateCreator if some is available in the DicomMap? |
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1074 const std::string tagName = GetTagName(it->first, ""); |
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1075 |
1368 | 1076 if (simplify) |
1077 { | |
1737
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1078 if (it->second->IsNull()) |
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1079 { |
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1080 result[tagName] = Json::nullValue; |
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1081 } |
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1082 else |
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1083 { |
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1084 // TODO IsBinary |
2115
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1085 result[tagName] = it->second->GetContent(); |
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1086 } |
1368 | 1087 } |
1088 else | |
1089 { | |
1090 Json::Value value = Json::objectValue; | |
1091 | |
2115
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1092 value["Name"] = tagName; |
1368 | 1093 |
1094 if (it->second->IsNull()) | |
1095 { | |
1096 value["Type"] = "Null"; | |
1097 value["Value"] = Json::nullValue; | |
1098 } | |
1099 else | |
1100 { | |
1737
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|
1101 // TODO IsBinary |
1368 | 1102 value["Type"] = "String"; |
1737
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|
1103 value["Value"] = it->second->GetContent(); |
1368 | 1104 } |
1105 | |
1106 result[it->first.Format()] = value; | |
1107 } | |
0 | 1108 } |
1109 } | |
176 | 1110 |
1111 | |
788 | 1112 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
176 | 1113 { |
1114 char uid[100]; | |
1115 | |
1116 switch (level) | |
1117 { | |
788 | 1118 case ResourceType_Patient: |
311 | 1119 // The "PatientID" field is of type LO (Long String), 64 |
1120 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
1121 // as a random PatientID. | |
1122 return Toolbox::GenerateUuid(); | |
306
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1123 |
788 | 1124 case ResourceType_Instance: |
302
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|
1125 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
176 | 1126 |
788 | 1127 case ResourceType_Series: |
302
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1128 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
176 | 1129 |
788 | 1130 case ResourceType_Study: |
302
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1131 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
176 | 1132 |
302
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1133 default: |
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1134 throw OrthancException(ErrorCode_ParameterOutOfRange); |
176 | 1135 } |
1136 } | |
1137 | |
291
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1138 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
1004
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1139 DcmDataset& dataSet) |
291
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1140 { |
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1141 // Determine the transfer syntax which shall be used to write the |
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1142 // information to the file. We always switch to the Little Endian |
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1143 // syntax, with explicit length. |
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1144 |
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1145 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
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1146 |
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1147 |
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1148 /** |
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1149 * Note that up to Orthanc 0.7.1 (inclusive), the |
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1150 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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1151 * dataset into memory. We now keep the original transfer syntax |
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1152 * (if available). |
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1153 **/ |
1004
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DicomInstanceToStore
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991
diff
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|
1154 E_TransferSyntax xfer = dataSet.getOriginalXfer(); |
661
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1155 if (xfer == EXS_Unknown) |
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1156 { |
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1157 // No information about the original transfer syntax: This is |
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1158 // most probably a DICOM dataset that was read from memory. |
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1159 xfer = EXS_LittleEndianExplicit; |
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1160 } |
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1161 |
291
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1162 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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1163 |
661
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|
1164 // Create the meta-header information |
1004
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diff
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|
1165 DcmFileFormat ff(&dataSet); |
661
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|
1166 ff.validateMetaInfo(xfer); |
1316
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diff
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|
1167 ff.removeInvalidGroups(); |
291
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1168 |
661
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|
1169 // Create a memory buffer with the proper size |
1876
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|
1170 { |
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|
1171 const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType); // (*) |
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|
1172 buffer.resize(estimatedSize); |
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|
1173 } |
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1174 |
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diff
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|
1175 DcmOutputBufferStream ob(&buffer[0], buffer.size()); |
291
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1176 |
661
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1177 // Fill the memory buffer with the meta-header and the dataset |
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1178 ff.transferInit(); |
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|
1179 OFCondition c = ff.write(ob, xfer, encodingType, NULL, |
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1180 /*opt_groupLength*/ EGL_recalcGL, |
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|
1181 /*opt_paddingType*/ EPD_withoutPadding); |
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1182 ff.transferEnd(); |
291
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1183 |
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1184 if (c.good()) |
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1185 { |
1876
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1186 // The DICOM file is successfully written, truncate the target |
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|
1187 // buffer if its size was overestimated by (*) |
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|
1188 ob.flush(); |
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1189 |
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diff
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|
1190 size_t effectiveSize = static_cast<size_t>(ob.tell()); |
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1191 if (effectiveSize < buffer.size()) |
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1192 { |
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1193 buffer.resize(effectiveSize); |
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1194 } |
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1195 |
291
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1196 return true; |
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1197 } |
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1198 else |
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1199 { |
1876
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1200 // Error |
291
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1201 buffer.clear(); |
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1202 return false; |
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1203 } |
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1204 } |
1360 | 1205 |
1206 | |
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diff
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|
1207 ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag) |
1360 | 1208 { |
1209 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
2006
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1210 return Convert(t.getEVR()); |
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1211 } |
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1212 |
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|
1213 ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr) |
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1214 { |
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|
1215 switch (vr) |
1417
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1216 { |
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|
1217 case EVR_AE: |
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1218 return ValueRepresentation_ApplicationEntity; |
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1219 |
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1220 case EVR_AS: |
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1221 return ValueRepresentation_AgeString; |
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1222 |
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1223 case EVR_AT: |
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1224 return ValueRepresentation_AttributeTag; |
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diff
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1225 |
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|
1226 case EVR_CS: |
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diff
changeset
|
1227 return ValueRepresentation_CodeString; |
1417
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diff
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|
1228 |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1229 case EVR_DA: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1230 return ValueRepresentation_Date; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1231 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1232 case EVR_DS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1233 return ValueRepresentation_DecimalString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1234 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1235 case EVR_DT: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1236 return ValueRepresentation_DateTime; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1237 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1238 case EVR_FL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1239 return ValueRepresentation_FloatingPointSingle; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1240 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1241 case EVR_FD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1242 return ValueRepresentation_FloatingPointDouble; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1243 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1244 case EVR_IS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1245 return ValueRepresentation_IntegerString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1246 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1247 case EVR_LO: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1248 return ValueRepresentation_LongString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1249 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1250 case EVR_LT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1251 return ValueRepresentation_LongText; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1252 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1253 case EVR_OB: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1254 return ValueRepresentation_OtherByte; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1255 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1256 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1257 /*case EVR_OD: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1258 return ValueRepresentation_OtherDouble;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1259 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1260 case EVR_OF: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1261 return ValueRepresentation_OtherFloat; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1262 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1263 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1264 /*case EVR_OL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1265 return ValueRepresentation_OtherLong;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1266 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1267 case EVR_OW: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1268 return ValueRepresentation_OtherWord; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1269 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1270 case EVR_PN: |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1271 return ValueRepresentation_PersonName; |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1272 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1273 case EVR_SH: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1274 return ValueRepresentation_ShortString; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1275 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1276 case EVR_SL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1277 return ValueRepresentation_SignedLong; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1278 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1279 case EVR_SQ: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1280 return ValueRepresentation_Sequence; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1281 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1282 case EVR_SS: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1283 return ValueRepresentation_SignedShort; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1284 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1285 case EVR_ST: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1286 return ValueRepresentation_ShortText; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1287 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1288 case EVR_TM: |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1289 return ValueRepresentation_Time; |
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1290 |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1291 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1292 /*case EVR_UC: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1293 return ValueRepresentation_UnlimitedCharacters;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1294 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1295 case EVR_UI: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1296 return ValueRepresentation_UniqueIdentifier; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1297 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1298 case EVR_UL: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1299 return ValueRepresentation_UnsignedLong; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1300 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1301 case EVR_UN: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1302 return ValueRepresentation_Unknown; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1303 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1304 // Not supported as of DCMTK 3.6.0 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1305 /*case EVR_UR: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1306 return ValueRepresentation_UniversalResource;*/ |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1307 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1308 case EVR_US: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1309 return ValueRepresentation_UnsignedShort; |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1310 |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1311 case EVR_UT: |
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1312 return ValueRepresentation_UnlimitedText; |
1792 | 1313 |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1314 default: |
2006
6301bbcbcaed
more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1998
diff
changeset
|
1315 return ValueRepresentation_NotSupported; |
1417
8e23f16a198d
fix issues 35 and 37
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1368
diff
changeset
|
1316 } |
1360 | 1317 } |
1318 | |
1689 | 1319 |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1320 static bool IsBinaryTag(const DcmTag& key) |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1321 { |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1322 return (key.isUnknownVR() || |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1323 key.getEVR() == EVR_OB || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1324 key.getEVR() == EVR_OF || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1325 key.getEVR() == EVR_OW || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1326 key.getEVR() == EVR_UN || |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1327 key.getEVR() == EVR_ox); |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1328 } |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1329 |
1689 | 1330 |
1331 DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag) | |
1332 { | |
1333 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1334 | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1335 if (tag.IsPrivate() || |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1336 IsBinaryTag(key)) |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1337 { |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1338 return new DcmOtherByteOtherWord(key); |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1339 } |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1340 |
1689 | 1341 switch (key.getEVR()) |
1342 { | |
1343 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1344 | |
1345 /** | |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1346 * Binary types, handled above |
1689 | 1347 **/ |
1348 | |
1349 case EVR_OB: // other byte | |
1350 case EVR_OF: // other float | |
1351 case EVR_OW: // other word | |
1352 case EVR_UN: // unknown value representation | |
1739
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1353 case EVR_ox: // OB or OW depending on context |
df331354cea2
include binary in ToJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1354 throw OrthancException(ErrorCode_InternalError); |
1689 | 1355 |
1356 | |
1357 /** | |
1358 * String types. | |
1359 * http://support.dcmtk.org/docs/classDcmByteString.html | |
1360 **/ | |
1361 | |
1362 case EVR_AS: // age string | |
1363 return new DcmAgeString(key); | |
1364 | |
1365 case EVR_AE: // application entity title | |
1366 return new DcmApplicationEntity(key); | |
1367 | |
1368 case EVR_CS: // code string | |
1369 return new DcmCodeString(key); | |
1370 | |
1371 case EVR_DA: // date string | |
1372 return new DcmDate(key); | |
1373 | |
1374 case EVR_DT: // date time string | |
1375 return new DcmDateTime(key); | |
1376 | |
1377 case EVR_DS: // decimal string | |
1378 return new DcmDecimalString(key); | |
1379 | |
1380 case EVR_IS: // integer string | |
1381 return new DcmIntegerString(key); | |
1382 | |
1383 case EVR_TM: // time string | |
1384 return new DcmTime(key); | |
1385 | |
1386 case EVR_UI: // unique identifier | |
1387 return new DcmUniqueIdentifier(key); | |
1388 | |
1389 case EVR_ST: // short text | |
1390 return new DcmShortText(key); | |
1391 | |
1392 case EVR_LO: // long string | |
1393 return new DcmLongString(key); | |
1394 | |
1395 case EVR_LT: // long text | |
1396 return new DcmLongText(key); | |
1397 | |
1398 case EVR_UT: // unlimited text | |
1399 return new DcmUnlimitedText(key); | |
1400 | |
1401 case EVR_SH: // short string | |
1402 return new DcmShortString(key); | |
1403 | |
1404 case EVR_PN: // person name | |
1405 return new DcmPersonName(key); | |
1406 | |
1407 | |
1408 /** | |
1409 * Numerical types | |
1410 **/ | |
1411 | |
1412 case EVR_SL: // signed long | |
1413 return new DcmSignedLong(key); | |
1414 | |
1415 case EVR_SS: // signed short | |
1416 return new DcmSignedShort(key); | |
1417 | |
1418 case EVR_UL: // unsigned long | |
1419 return new DcmUnsignedLong(key); | |
1420 | |
1421 case EVR_US: // unsigned short | |
1422 return new DcmUnsignedShort(key); | |
1423 | |
1424 case EVR_FL: // float single-precision | |
1425 return new DcmFloatingPointSingle(key); | |
1426 | |
1427 case EVR_FD: // float double-precision | |
1428 return new DcmFloatingPointDouble(key); | |
1429 | |
1430 | |
1431 /** | |
1432 * Sequence types, should never occur at this point. | |
1433 **/ | |
1434 | |
1435 case EVR_SQ: // sequence of items | |
1436 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1437 | |
1438 | |
1439 /** | |
1739
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1738
diff
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|
1440 * TODO |
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diff
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|
1441 **/ |
df331354cea2
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|
1442 |
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diff
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|
1443 case EVR_AT: // attribute tag |
df331354cea2
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1738
diff
changeset
|
1444 throw OrthancException(ErrorCode_NotImplemented); |
df331354cea2
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diff
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|
1445 |
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diff
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|
1446 |
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diff
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|
1447 /** |
1689 | 1448 * Internal to DCMTK. |
1449 **/ | |
1450 | |
1451 case EVR_xs: // SS or US depending on context | |
1452 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1453 case EVR_na: // na="not applicable", for data which has no VR | |
1454 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1455 case EVR_item: // used internally for items | |
1456 case EVR_metainfo: // used internally for meta info datasets | |
1457 case EVR_dataset: // used internally for datasets | |
1458 case EVR_fileFormat: // used internally for DICOM files | |
1459 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1460 case EVR_dirRecord: // used internally for DICOMDIR records | |
1461 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1462 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1463 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1464 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1465 case EVR_OverlayData: // used internally for overlay data | |
1466 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1467 default: | |
1468 break; | |
1469 } | |
1470 | |
1471 throw OrthancException(ErrorCode_InternalError); | |
1472 } | |
1473 | |
1474 | |
1475 | |
1476 void FromDcmtkBridge::FillElementWithString(DcmElement& element, | |
1477 const DicomTag& tag, | |
1695 | 1478 const std::string& utf8Value, |
1818
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ParsedDicomFile::CreateFromJson
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parents:
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diff
changeset
|
1479 bool decodeDataUriScheme, |
1695 | 1480 Encoding dicomEncoding) |
1689 | 1481 { |
1482 std::string binary; | |
1695 | 1483 const std::string* decoded = &utf8Value; |
1689 | 1484 |
1818
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ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1485 if (decodeDataUriScheme && |
1695 | 1486 boost::starts_with(utf8Value, "data:application/octet-stream;base64,")) |
1689 | 1487 { |
1488 std::string mime; | |
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1489 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1490 { |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1491 throw OrthancException(ErrorCode_BadFileFormat); |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1492 } |
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1976
diff
changeset
|
1493 |
1695 | 1494 decoded = &binary; |
1495 } | |
1496 else if (dicomEncoding != Encoding_Utf8) | |
1497 { | |
1498 binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding); | |
1689 | 1499 decoded = &binary; |
1500 } | |
1501 | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1502 DcmTag key(tag.GetGroup(), tag.GetElement()); |
1689 | 1503 |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1504 if (tag.IsPrivate() || |
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1505 IsBinaryTag(key)) |
1689 | 1506 { |
1507 if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good()) | |
1508 { | |
1509 return; | |
1510 } | |
1511 else | |
1512 { | |
1513 throw OrthancException(ErrorCode_InternalError); | |
1514 } | |
1515 } | |
1516 | |
1517 bool ok = false; | |
1518 | |
1519 try | |
1520 { | |
1521 switch (key.getEVR()) | |
1522 { | |
1523 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
1524 | |
1525 /** | |
1526 * TODO. | |
1527 **/ | |
1528 | |
1529 case EVR_OB: // other byte | |
1530 case EVR_OF: // other float | |
1531 case EVR_OW: // other word | |
1532 case EVR_AT: // attribute tag | |
1533 throw OrthancException(ErrorCode_NotImplemented); | |
1534 | |
1535 case EVR_UN: // unknown value representation | |
1536 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
1537 | |
1538 | |
1539 /** | |
1540 * String types. | |
1541 **/ | |
1542 | |
1543 case EVR_DS: // decimal string | |
1544 case EVR_IS: // integer string | |
1545 case EVR_AS: // age string | |
1546 case EVR_DA: // date string | |
1547 case EVR_DT: // date time string | |
1548 case EVR_TM: // time string | |
1549 case EVR_AE: // application entity title | |
1550 case EVR_CS: // code string | |
1551 case EVR_SH: // short string | |
1552 case EVR_LO: // long string | |
1553 case EVR_ST: // short text | |
1554 case EVR_LT: // long text | |
1555 case EVR_UT: // unlimited text | |
1556 case EVR_PN: // person name | |
1557 case EVR_UI: // unique identifier | |
1558 { | |
1559 ok = element.putString(decoded->c_str()).good(); | |
1560 break; | |
1561 } | |
1562 | |
1563 | |
1564 /** | |
1565 * Numerical types | |
1566 **/ | |
1567 | |
1568 case EVR_SL: // signed long | |
1569 { | |
1570 ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good(); | |
1571 break; | |
1572 } | |
1573 | |
1574 case EVR_SS: // signed short | |
1575 { | |
1576 ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good(); | |
1577 break; | |
1578 } | |
1579 | |
1580 case EVR_UL: // unsigned long | |
1581 { | |
1582 ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good(); | |
1583 break; | |
1584 } | |
1585 | |
1586 case EVR_US: // unsigned short | |
1587 { | |
1588 ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good(); | |
1589 break; | |
1590 } | |
1591 | |
1592 case EVR_FL: // float single-precision | |
1593 { | |
1594 ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good(); | |
1595 break; | |
1596 } | |
1597 | |
1598 case EVR_FD: // float double-precision | |
1599 { | |
1600 ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good(); | |
1601 break; | |
1602 } | |
1603 | |
1604 | |
1605 /** | |
1606 * Sequence types, should never occur at this point. | |
1607 **/ | |
1608 | |
1609 case EVR_SQ: // sequence of items | |
1610 { | |
1611 ok = false; | |
1612 break; | |
1613 } | |
1614 | |
1615 | |
1616 /** | |
1617 * Internal to DCMTK. | |
1618 **/ | |
1619 | |
1620 case EVR_ox: // OB or OW depending on context | |
1621 case EVR_xs: // SS or US depending on context | |
1622 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) | |
1623 case EVR_na: // na="not applicable", for data which has no VR | |
1624 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor | |
1625 case EVR_item: // used internally for items | |
1626 case EVR_metainfo: // used internally for meta info datasets | |
1627 case EVR_dataset: // used internally for datasets | |
1628 case EVR_fileFormat: // used internally for DICOM files | |
1629 case EVR_dicomDir: // used internally for DICOMDIR objects | |
1630 case EVR_dirRecord: // used internally for DICOMDIR records | |
1631 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image | |
1632 case EVR_pixelItem: // used internally for pixel items in a compressed image | |
1633 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) | |
1634 case EVR_PixelData: // used internally for uncompressed pixeld data | |
1635 case EVR_OverlayData: // used internally for overlay data | |
1636 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR | |
1637 default: | |
1638 break; | |
1639 } | |
1640 } | |
1641 catch (boost::bad_lexical_cast&) | |
1642 { | |
1643 ok = false; | |
1644 } | |
1645 | |
1646 if (!ok) | |
1647 { | |
1648 throw OrthancException(ErrorCode_InternalError); | |
1649 } | |
1650 } | |
1651 | |
1652 | |
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1653 DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag, |
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1691
diff
changeset
|
1654 const Json::Value& value, |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1655 bool decodeDataUriScheme, |
1695 | 1656 Encoding dicomEncoding) |
1689 | 1657 { |
1658 std::auto_ptr<DcmElement> element; | |
1659 | |
1690 | 1660 switch (value.type()) |
1689 | 1661 { |
1690 | 1662 case Json::stringValue: |
1663 element.reset(CreateElementForTag(tag)); | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1664 FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding); |
1690 | 1665 break; |
1666 | |
1667 case Json::arrayValue: | |
1668 { | |
1669 DcmTag key(tag.GetGroup(), tag.GetElement()); | |
1670 if (key.getEVR() != EVR_SQ) | |
1671 { | |
1672 throw OrthancException(ErrorCode_BadParameterType); | |
1673 } | |
1674 | |
1675 DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key, value.size()); | |
1676 element.reset(sequence); | |
1677 | |
1678 for (Json::Value::ArrayIndex i = 0; i < value.size(); i++) | |
1679 { | |
1680 std::auto_ptr<DcmItem> item(new DcmItem); | |
1681 | |
1682 Json::Value::Members members = value[i].getMemberNames(); | |
1683 for (Json::Value::ArrayIndex j = 0; j < members.size(); j++) | |
1684 { | |
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1792
diff
changeset
|
1685 item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding)); |
1690 | 1686 } |
1687 | |
1688 sequence->append(item.release()); | |
1689 } | |
1690 | |
1691 break; | |
1692 } | |
1693 | |
1694 default: | |
1695 throw OrthancException(ErrorCode_BadParameterType); | |
1689 | 1696 } |
1697 | |
1698 return element.release(); | |
1699 } | |
1765
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1700 |
57b9e6890482
New configuration option: "Dictionary" to declare custom DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1739
diff
changeset
|
1701 |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1702 DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1703 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1704 DcmElement *element = NULL; |
1927
b60f27664b8f
simplification in FromDcmtkBridge
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
1705 if (!dataset.findAndGetElement(DCM_PixelData, element).good()) |
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1706 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1707 throw OrthancException(ErrorCode_BadFileFormat); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1708 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1709 |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1710 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1711 DcmPixelSequence* pixelSequence = NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1712 if (!pixelData.getEncapsulatedRepresentation |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1713 (dataset.getOriginalXfer(), NULL, pixelSequence).good()) |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1714 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1715 return NULL; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1716 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1717 else |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1718 { |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1719 return pixelSequence; |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1720 } |
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1900
diff
changeset
|
1721 } |
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1722 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1723 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1724 Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1725 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1726 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1727 if (json.type() != Json::objectValue) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1728 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1729 throw OrthancException(ErrorCode_BadParameterType); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1730 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1731 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1732 Encoding encoding = defaultEncoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1733 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1734 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1735 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1736 // Look for SpecificCharacterSet (0008,0005) in the JSON file |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1737 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1738 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1739 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1740 if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1741 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1742 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1743 if (value.type() != Json::stringValue || |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1744 !GetDicomEncoding(encoding, value.asCString())) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1745 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1746 LOG(ERROR) << "Unknown encoding while creating DICOM from JSON: " << value; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1747 throw OrthancException(ErrorCode_BadRequest); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1748 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1749 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1750 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1751 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1752 return encoding; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1753 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1754 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1755 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1756 static void SetString(DcmDataset& target, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1757 const DcmTag& tag, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1758 const std::string& value) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1759 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1760 if (!target.putAndInsertString(tag, value.c_str()).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1761 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1762 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1763 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1764 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1765 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1766 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1767 DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json, // Encoded using UTF-8 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1768 bool generateIdentifiers, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1769 bool decodeDataUriScheme, |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1770 Encoding defaultEncoding) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1771 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1772 std::auto_ptr<DcmDataset> result(new DcmDataset); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1773 Encoding encoding = ExtractEncoding(json, defaultEncoding); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1774 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1775 SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1776 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1777 const Json::Value::Members tags = json.getMemberNames(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1778 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1779 bool hasPatientId = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1780 bool hasStudyInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1781 bool hasSeriesInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1782 bool hasSopInstanceUid = false; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1783 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1784 for (size_t i = 0; i < tags.size(); i++) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1785 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1786 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1787 const Json::Value& value = json[tags[i]]; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1788 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1789 if (tag == DICOM_TAG_PATIENT_ID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1790 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1791 hasPatientId = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1792 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1793 else if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1794 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1795 hasStudyInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1796 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1797 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1798 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1799 hasSeriesInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1800 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1801 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1802 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1803 hasSopInstanceUid = true; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1804 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1805 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1806 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1807 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1808 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1809 const DcmTagKey& tag = element->getTag(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1810 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1811 result->findAndDeleteElement(tag); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1812 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1813 DcmElement* tmp = element.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1814 if (!result->insert(tmp, false, false).good()) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1815 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1816 delete tmp; |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1817 throw OrthancException(ErrorCode_InternalError); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1818 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1819 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1820 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1821 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1822 if (!hasPatientId && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1823 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1824 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1825 SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1826 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1827 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1828 if (!hasStudyInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1829 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1830 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1831 SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1832 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1833 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1834 if (!hasSeriesInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1835 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1836 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1837 SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1838 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1839 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1840 if (!hasSopInstanceUid && |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1841 generateIdentifiers) |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1842 { |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1843 SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance)); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1844 } |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1845 |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1846 return result.release(); |
72a2fd7fed8b
FromDcmtkBridge::FromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1930
diff
changeset
|
1847 } |
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1848 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1849 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1850 DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer, |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1851 size_t size) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1852 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1853 DcmInputBufferStream is; |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1854 if (size > 0) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1855 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1856 is.setBuffer(buffer, size); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1857 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1858 is.setEos(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1859 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1860 std::auto_ptr<DcmFileFormat> result(new DcmFileFormat); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1861 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1862 result->transferInit(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1863 if (!result->read(is).good()) |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1864 { |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1865 throw OrthancException(ErrorCode_BadFileFormat); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1866 } |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1867 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1868 result->loadAllDataIntoMemory(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1869 result->transferEnd(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1870 |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1871 return result.release(); |
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
1872 } |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1873 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1874 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1875 void FromDcmtkBridge::FromJson(DicomMap& target, |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1876 const Json::Value& source) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1877 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1878 if (source.type() != Json::objectValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1879 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1880 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1881 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1882 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1883 target.Clear(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1884 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1885 Json::Value::Members members = source.getMemberNames(); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1886 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1887 for (size_t i = 0; i < members.size(); i++) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1888 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1889 const Json::Value& value = source[members[i]]; |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1890 |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1891 if (value.type() != Json::stringValue) |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1892 { |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1893 throw OrthancException(ErrorCode_BadFileFormat); |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1894 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1895 |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2006
diff
changeset
|
1896 target.SetValue(ParseTag(members[i]), value.asString(), false); |
1998
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1897 } |
9b61701c35f2
New URI "/modalities/.../move" to issue C-Move SCU requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1898 } |
0 | 1899 } |