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annotate UnitTestsSources/FromDcmtkTests.cpp @ 1677:a903d57d9f0c db-changes

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adaptation of search with patient tags at study level
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 05 Oct 2015 16:40:14 +0200
parents 3727a09e7b53
children ae09132e4237
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "PrecompiledHeadersUnitTests.h"
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34 #include "gtest/gtest.h"
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35
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36 #include "../OrthancServer/FromDcmtkBridge.h"
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37 #include "../OrthancServer/OrthancInitialization.h"
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38 #include "../OrthancServer/DicomModification.h"
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39 #include "../Core/OrthancException.h"
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40 #include "../Core/Images/ImageBuffer.h"
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41 #include "../Core/Images/PngReader.h"
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42 #include "../Core/Images/PngWriter.h"
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43 #include "../Core/Uuid.h"
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44 #include "../Resources/EncodingTests.h"
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45
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46 using namespace Orthanc;
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47
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48 TEST(DicomFormat, Tag)
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49 {
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50 ASSERT_EQ("PatientName", FromDcmtkBridge::GetName(DicomTag(0x0010, 0x0010)));
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51
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52 DicomTag t = FromDcmtkBridge::ParseTag("SeriesDescription");
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53 ASSERT_EQ(0x0008, t.GetGroup());
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54 ASSERT_EQ(0x103E, t.GetElement());
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55
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56 t = FromDcmtkBridge::ParseTag("0020-e040");
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57 ASSERT_EQ(0x0020, t.GetGroup());
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58 ASSERT_EQ(0xe040, t.GetElement());
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59
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60 // Test ==() and !=() operators
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61 ASSERT_TRUE(DICOM_TAG_PATIENT_ID == DicomTag(0x0010, 0x0020));
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62 ASSERT_FALSE(DICOM_TAG_PATIENT_ID != DicomTag(0x0010, 0x0020));
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63 }
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64
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65
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66 TEST(DicomModification, Basic)
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67 {
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68 DicomModification m;
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69 m.SetupAnonymization();
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70 //m.SetLevel(DicomRootLevel_Study);
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71 //m.Replace(DICOM_TAG_PATIENT_ID, "coucou");
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72 //m.Replace(DICOM_TAG_PATIENT_NAME, "coucou");
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73
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74 ParsedDicomFile o;
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75 o.SaveToFile("UnitTestsResults/anon.dcm");
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76
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77 for (int i = 0; i < 10; i++)
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78 {
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79 char b[1024];
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80 sprintf(b, "UnitTestsResults/anon%06d.dcm", i);
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81 std::auto_ptr<ParsedDicomFile> f(o.Clone());
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82 if (i > 4)
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83 o.Replace(DICOM_TAG_SERIES_INSTANCE_UID, "coucou");
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84 m.Apply(*f);
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85 f->SaveToFile(b);
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86 }
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87 }
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89
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90 TEST(DicomModification, Anonymization)
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91 {
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92 ASSERT_EQ(DICOM_TAG_PATIENT_NAME, FromDcmtkBridge::ParseTag("PatientName"));
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93
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94 const DicomTag privateTag(0x0045, 0x0010);
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95 const DicomTag privateTag2(FromDcmtkBridge::ParseTag("0031-1020"));
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96 ASSERT_TRUE(FromDcmtkBridge::IsPrivateTag(privateTag));
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97 ASSERT_TRUE(FromDcmtkBridge::IsPrivateTag(privateTag2));
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98 ASSERT_EQ(0x0031, privateTag2.GetGroup());
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99 ASSERT_EQ(0x1020, privateTag2.GetElement());
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100
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101 std::string s;
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102 ParsedDicomFile o;
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103 o.Replace(DICOM_TAG_PATIENT_NAME, "coucou");
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104 ASSERT_FALSE(o.GetTagValue(s, privateTag));
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105 o.Insert(privateTag, "private tag");
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106 ASSERT_TRUE(o.GetTagValue(s, privateTag));
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107 ASSERT_STREQ("private tag", s.c_str());
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108
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109 ASSERT_FALSE(o.GetTagValue(s, privateTag2));
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110 ASSERT_THROW(o.Replace(privateTag2, "hello", DicomReplaceMode_ThrowIfAbsent), OrthancException);
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111 ASSERT_FALSE(o.GetTagValue(s, privateTag2));
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112 o.Replace(privateTag2, "hello", DicomReplaceMode_IgnoreIfAbsent);
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113 ASSERT_FALSE(o.GetTagValue(s, privateTag2));
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114 o.Replace(privateTag2, "hello", DicomReplaceMode_InsertIfAbsent);
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115 ASSERT_TRUE(o.GetTagValue(s, privateTag2));
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116 ASSERT_STREQ("hello", s.c_str());
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117 o.Replace(privateTag2, "hello world");
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118 ASSERT_TRUE(o.GetTagValue(s, privateTag2));
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119 ASSERT_STREQ("hello world", s.c_str());
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120
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121 ASSERT_TRUE(o.GetTagValue(s, DICOM_TAG_PATIENT_NAME));
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122 ASSERT_FALSE(Toolbox::IsUuid(s));
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123
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124 DicomModification m;
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125 m.SetupAnonymization();
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126 m.Keep(privateTag);
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127
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128 m.Apply(o);
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129
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130 ASSERT_TRUE(o.GetTagValue(s, DICOM_TAG_PATIENT_NAME));
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131 ASSERT_TRUE(Toolbox::IsUuid(s));
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132 ASSERT_TRUE(o.GetTagValue(s, privateTag));
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133 ASSERT_STREQ("private tag", s.c_str());
991
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134
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135 m.SetupAnonymization();
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136 m.Apply(o);
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137 ASSERT_FALSE(o.GetTagValue(s, privateTag));
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138 }
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139
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140
802
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141 #include <dcmtk/dcmdata/dcuid.h>
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142
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143 TEST(DicomModification, Png)
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144 {
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145 // Red dot in http://en.wikipedia.org/wiki/Data_URI_scheme (RGBA image)
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146 std::string s = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==";
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147
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148 std::string m, cc;
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149 Toolbox::DecodeDataUriScheme(m, cc, s);
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150
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151 ASSERT_EQ("image/png", m);
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152
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153 PngReader reader;
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154 reader.ReadFromMemory(cc);
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155
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156 ASSERT_EQ(5u, reader.GetHeight());
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157 ASSERT_EQ(5u, reader.GetWidth());
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158 ASSERT_EQ(PixelFormat_RGBA32, reader.GetFormat());
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159
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160 ParsedDicomFile o;
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161 o.EmbedContent(s);
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162 o.SaveToFile("UnitTestsResults/png1.dcm");
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163
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164 // Red dot, without alpha channel
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165 s = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAIAAAACDbGyAAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDTcIn2+8BgAAACJJREFUCNdj/P//PwMjIwME/P/P+J8BBTAxEOL/R9Lx/z8AynoKAXOeiV8AAAAASUVORK5CYII=";
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166 o.EmbedContent(s);
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167 o.SaveToFile("UnitTestsResults/png2.dcm");
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168
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169 // Check box in Graylevel8
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170 s = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII=";
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171 o.EmbedContent(s);
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172 //o.Replace(DICOM_TAG_SOP_CLASS_UID, UID_DigitalXRayImageStorageForProcessing);
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173 o.SaveToFile("UnitTestsResults/png3.dcm");
800
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174
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175
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176 {
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177 // Gradient in Graylevel16
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178
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179 ImageBuffer img;
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180 img.SetWidth(256);
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181 img.SetHeight(256);
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182 img.SetFormat(PixelFormat_Grayscale16);
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183
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184 uint16_t v = 0;
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185 for (unsigned int y = 0; y < img.GetHeight(); y++)
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186 {
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187 uint16_t *p = reinterpret_cast<uint16_t*>(img.GetAccessor().GetRow(y));
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188 for (unsigned int x = 0; x < img.GetWidth(); x++, p++, v++)
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189 {
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190 *p = v;
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191 }
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192 }
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193
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194 o.EmbedImage(img.GetAccessor());
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195 o.SaveToFile("UnitTestsResults/png4.dcm");
800
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196 }
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197 }
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198
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199
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200 TEST(FromDcmtkBridge, Encodings1)
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201 {
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202 for (unsigned int i = 0; i < testEncodingsCount; i++)
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203 {
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204 std::string source(testEncodingsEncoded[i]);
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205 std::string expected(testEncodingsExpected[i]);
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206 std::string s = Toolbox::ConvertToUtf8(source, testEncodings[i]);
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207 std::cout << EnumerationToString(testEncodings[i]) << std::endl;
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208 EXPECT_EQ(expected, s);
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209 }
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210 }
1090
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211
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212
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213 TEST(FromDcmtkBridge, Enumerations)
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214 {
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215 Encoding e;
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216
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217 ASSERT_FALSE(GetDicomEncoding(e, ""));
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218 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 6")); ASSERT_EQ(Encoding_Utf8, e);
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219
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220 // http://www.dabsoft.ch/dicom/3/C.12.1.1.2/ - Table C.12-2
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221 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 100")); ASSERT_EQ(Encoding_Latin1, e);
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222 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 101")); ASSERT_EQ(Encoding_Latin2, e);
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223 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 109")); ASSERT_EQ(Encoding_Latin3, e);
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224 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 110")); ASSERT_EQ(Encoding_Latin4, e);
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225 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 144")); ASSERT_EQ(Encoding_Cyrillic, e);
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226 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 127")); ASSERT_EQ(Encoding_Arabic, e);
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227 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 126")); ASSERT_EQ(Encoding_Greek, e);
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228 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 138")); ASSERT_EQ(Encoding_Hebrew, e);
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229 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 148")); ASSERT_EQ(Encoding_Latin5, e);
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230 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 13")); ASSERT_EQ(Encoding_Japanese, e);
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231 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 166")); ASSERT_EQ(Encoding_Thai, e);
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232
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233 // http://www.dabsoft.ch/dicom/3/C.12.1.1.2/ - Table C.12-3
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234 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 6")); ASSERT_EQ(Encoding_Utf8, e);
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235 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 100")); ASSERT_EQ(Encoding_Latin1, e);
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236 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 101")); ASSERT_EQ(Encoding_Latin2, e);
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237 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 109")); ASSERT_EQ(Encoding_Latin3, e);
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238 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 110")); ASSERT_EQ(Encoding_Latin4, e);
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239 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 144")); ASSERT_EQ(Encoding_Cyrillic, e);
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240 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 127")); ASSERT_EQ(Encoding_Arabic, e);
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241 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 126")); ASSERT_EQ(Encoding_Greek, e);
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242 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 138")); ASSERT_EQ(Encoding_Hebrew, e);
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243 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 148")); ASSERT_EQ(Encoding_Latin5, e);
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244 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 13")); ASSERT_EQ(Encoding_Japanese, e);
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245 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 166")); ASSERT_EQ(Encoding_Thai, e);
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246
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247 // http://www.dabsoft.ch/dicom/3/C.12.1.1.2/ - Table C.12-4
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248 ASSERT_FALSE(GetDicomEncoding(e, "ISO 2022 IR 87")); //ASSERT_EQ(Encoding_JapaneseKanji, e);
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249 ASSERT_FALSE(GetDicomEncoding(e, "ISO 2022 IR 159")); //ASSERT_EQ(Encoding_JapaneseKanjiSupplementary, e);
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250 ASSERT_FALSE(GetDicomEncoding(e, "ISO 2022 IR 149")); //ASSERT_EQ(Encoding_Korean, e);
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251
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252 // http://www.dabsoft.ch/dicom/3/C.12.1.1.2/ - Table C.12-5
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253 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 192")); ASSERT_EQ(Encoding_Utf8, e);
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254 ASSERT_TRUE(GetDicomEncoding(e, "GB18030")); ASSERT_EQ(Encoding_Chinese, e);
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255 }
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256
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257
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258 TEST(FromDcmtkBridge, Encodings3)
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259 {
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260 for (unsigned int i = 0; i < testEncodingsCount; i++)
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261 {
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262 std::cout << EnumerationToString(testEncodings[i]) << std::endl;
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263 std::string dicom;
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264
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265 {
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266 ParsedDicomFile f;
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267 f.SetEncoding(testEncodings[i]);
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268 f.Insert(DICOM_TAG_PATIENT_NAME, testEncodingsEncoded[i]);
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269 f.SaveToMemoryBuffer(dicom);
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270 }
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271
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272 if (testEncodings[i] != Encoding_Windows1251)
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273 {
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274 ParsedDicomFile g(dicom);
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275
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276 if (testEncodings[i] != Encoding_Ascii)
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277 {
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278 ASSERT_EQ(testEncodings[i], g.GetEncoding());
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279 }
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280
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281 std::string tag;
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282 ASSERT_TRUE(g.GetTagValue(tag, DICOM_TAG_PATIENT_NAME));
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283 ASSERT_EQ(std::string(testEncodingsExpected[i]), tag);
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284 }
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285 }
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286 }
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287
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288
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289 TEST(FromDcmtkBridge, ValueRepresentation)
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290 {
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291 ASSERT_EQ(ValueRepresentation_PatientName,
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292 FromDcmtkBridge::GetValueRepresentation(DICOM_TAG_PATIENT_NAME));
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293 ASSERT_EQ(ValueRepresentation_Date,
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294 FromDcmtkBridge::GetValueRepresentation(DicomTag(0x0008, 0x0020) /* StudyDate */));
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295 ASSERT_EQ(ValueRepresentation_Time,
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296 FromDcmtkBridge::GetValueRepresentation(DicomTag(0x0008, 0x0030) /* StudyTime */));
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297 ASSERT_EQ(ValueRepresentation_DateTime,
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298 FromDcmtkBridge::GetValueRepresentation(DicomTag(0x0008, 0x002a) /* AcquisitionDateTime */));
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299 ASSERT_EQ(ValueRepresentation_Other,
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300 FromDcmtkBridge::GetValueRepresentation(DICOM_TAG_PATIENT_ID));
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301 }