annotate UnitTestsSources/FromDcmtk.cpp @ 803:4689e400e0fa

directory to store the results of the unit tests
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 07 May 2014 09:29:11 +0200
parents 82b07ab959f4
children a017d1a89b4f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
782
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 #include "gtest/gtest.h"
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 #include "../OrthancServer/FromDcmtkBridge.h"
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 #include "../OrthancServer/OrthancInitialization.h"
786
b6d6b65142e8 DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 785
diff changeset
5 #include "../OrthancServer/DicomModification.h"
784
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
6 #include "../Core/OrthancException.h"
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
7 #include "../Core/ImageFormats/ImageBuffer.h"
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
8 #include "../Core/ImageFormats/PngReader.h"
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
9 #include "../Core/ImageFormats/PngWriter.h"
782
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 using namespace Orthanc;
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 TEST(DicomFormat, Tag)
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 {
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 ASSERT_EQ("PatientName", FromDcmtkBridge::GetName(DicomTag(0x0010, 0x0010)));
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 DicomTag t = FromDcmtkBridge::ParseTag("SeriesDescription");
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 ASSERT_EQ(0x0008, t.GetGroup());
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 ASSERT_EQ(0x103E, t.GetElement());
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 t = FromDcmtkBridge::ParseTag("0020-e040");
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 ASSERT_EQ(0x0020, t.GetGroup());
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 ASSERT_EQ(0xe040, t.GetElement());
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 // Test ==() and !=() operators
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 ASSERT_TRUE(DICOM_TAG_PATIENT_ID == DicomTag(0x0010, 0x0020));
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 ASSERT_FALSE(DICOM_TAG_PATIENT_ID != DicomTag(0x0010, 0x0020));
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 }
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
a60040857ce6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30
784
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
31 TEST(DicomModification, Basic)
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
32 {
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
33 DicomModification m;
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
34 m.SetupAnonymization();
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
35 //m.SetLevel(DicomRootLevel_Study);
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
36 //m.Replace(DICOM_TAG_PATIENT_ID, "coucou");
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
37 //m.Replace(DICOM_TAG_PATIENT_NAME, "coucou");
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
38
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
39 ParsedDicomFile o;
803
4689e400e0fa directory to store the results of the unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 802
diff changeset
40 o.SaveToFile("UnitTestsResults/anon.dcm");
784
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
41
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
42 for (int i = 0; i < 10; i++)
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
43 {
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
44 char b[1024];
803
4689e400e0fa directory to store the results of the unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 802
diff changeset
45 sprintf(b, "UnitTestsResults/anon%06d.dcm", i);
784
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
46 std::auto_ptr<ParsedDicomFile> f(o.Clone());
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
47 if (i > 4)
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
48 o.Replace(DICOM_TAG_SERIES_INSTANCE_UID, "coucou");
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
49 m.Apply(*f);
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
50 f->SaveToFile(b);
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
51 }
efd0215736d9 start of anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 782
diff changeset
52 }
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
53
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
54
802
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 800
diff changeset
55 #include <dcmtk/dcmdata/dcuid.h>
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
56
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
57 TEST(DicomModification, Png)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
58 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
59 // Red dot in http://en.wikipedia.org/wiki/Data_URI_scheme (RGBA image)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
60 std::string s = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg==";
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
61
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
62 std::string m, c;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
63 Toolbox::DecodeDataUriScheme(m, c, s);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
64
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
65 ASSERT_EQ("image/png", m);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
66 ASSERT_EQ(116, c.size());
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
67
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
68 std::string cc = Toolbox::DecodeBase64(c);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
69
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
70 Toolbox::WriteFile(cc, "/tmp/tata.png");
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
71
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
72 PngReader reader;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
73 reader.ReadFromMemory(cc);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
74
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
75 ASSERT_EQ(5, reader.GetHeight());
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
76 ASSERT_EQ(5, reader.GetWidth());
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
77 ASSERT_EQ(PixelFormat_RGBA32, reader.GetFormat());
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
78
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
79 ParsedDicomFile o;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
80 o.EmbedImage(s);
803
4689e400e0fa directory to store the results of the unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 802
diff changeset
81 o.SaveToFile("UnitTestsResults/png1.dcm");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
82
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
83 // Red dot, without alpha channel
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
84 s = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAIAAAACDbGyAAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDTcIn2+8BgAAACJJREFUCNdj/P//PwMjIwME/P/P+J8BBTAxEOL/R9Lx/z8AynoKAXOeiV8AAAAASUVORK5CYII=";
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
85 o.EmbedImage(s);
803
4689e400e0fa directory to store the results of the unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 802
diff changeset
86 o.SaveToFile("UnitTestsResults/png2.dcm");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
87
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
88 // Check box in Graylevel8
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
89 s = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII=";
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
90 o.EmbedImage(s);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
91 //o.Replace(DICOM_TAG_SOP_CLASS_UID, UID_DigitalXRayImageStorageForProcessing);
803
4689e400e0fa directory to store the results of the unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 802
diff changeset
92 o.SaveToFile("UnitTestsResults/png3.dcm");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
93
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
94
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
95 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
96 // Gradient in Graylevel16
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
97
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
98 ImageBuffer img;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
99 img.SetWidth(256);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
100 img.SetHeight(256);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
101 img.SetFormat(PixelFormat_Grayscale16);
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
102
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
103 int v = 0;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
104 for (unsigned int y = 0; y < img.GetHeight(); y++)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
105 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
106 uint16_t *p = reinterpret_cast<uint16_t*>(img.GetAccessor().GetRow(y));
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
107 for (unsigned int x = 0; x < img.GetWidth(); x++, p++, v++)
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
108 {
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
109 *p = v;
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
110 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
111 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
112
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
113 o.EmbedImage(img.GetAccessor());
803
4689e400e0fa directory to store the results of the unit tests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 802
diff changeset
114 o.SaveToFile("UnitTestsResults/png4.dcm");
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
115 }
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 786
diff changeset
116 }