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annotate Plugins/Samples/ModalityWorklists/Plugin.cpp @ 2925:a80ba85d89e6

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Orthanc starts even if jobs from a previous execution cannot be unserialized
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 09 Nov 2018 09:46:21 +0100
parents d4fd4614f275
children bb7a66efbeb1
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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21
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22 #include "../Common/OrthancPluginCppWrapper.h"
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23
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24 #include <boost/filesystem.hpp>
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25 #include <json/value.h>
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26 #include <json/reader.h>
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27 #include <string.h>
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28 #include <iostream>
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29 #include <algorithm>
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30
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31 static OrthancPluginContext* context_ = NULL;
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32 static std::string folder_;
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33 static bool filterIssuerAet_ = false;
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34
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35 /**
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36 * This is the main function for matching a DICOM worklist against a query.
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37 **/
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38 static bool MatchWorklist(OrthancPluginWorklistAnswers* answers,
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39 const OrthancPluginWorklistQuery* query,
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40 const OrthancPlugins::FindMatcher& matcher,
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41 const std::string& path)
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42 {
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43 OrthancPlugins::MemoryBuffer dicom(context_);
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44 dicom.ReadFile(path);
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45
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46 if (matcher.IsMatch(dicom))
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47 {
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48 // This DICOM file matches the worklist query, add it to the answers
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49 OrthancPluginErrorCode code = OrthancPluginWorklistAddAnswer
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50 (context_, answers, query, dicom.GetData(), dicom.GetSize());
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51
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52 if (code != OrthancPluginErrorCode_Success)
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53 {
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54 OrthancPlugins::LogError(context_, "Error while adding an answer to a worklist request");
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55 ORTHANC_PLUGINS_THROW_PLUGIN_ERROR_CODE(code);
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56 }
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57
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58 return true;
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59 }
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60
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61 return false;
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62 }
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63
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64
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65 static OrthancPlugins::FindMatcher* CreateMatcher(const OrthancPluginWorklistQuery* query,
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66 const char* issuerAet)
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67 {
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68 // Extract the DICOM instance underlying the C-Find query
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69 OrthancPlugins::MemoryBuffer dicom(context_);
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70 dicom.GetDicomQuery(query);
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71
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72 // Convert the DICOM as JSON, and dump it to the user in "--verbose" mode
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73 Json::Value json;
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74 dicom.DicomToJson(json, OrthancPluginDicomToJsonFormat_Short,
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75 static_cast<OrthancPluginDicomToJsonFlags>(0), 0);
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76
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77 OrthancPlugins::LogInfo(context_, "Received worklist query from remote modality " +
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78 std::string(issuerAet) + ":\n" + json.toStyledString());
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79
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80 if (!filterIssuerAet_)
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81 {
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82 return new OrthancPlugins::FindMatcher(context_, query);
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83 }
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84 else
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85 {
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86 // Alternative sample showing how to fine-tune an incoming C-Find
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87 // request, before matching it against the worklist database. The
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88 // code below will restrict the original DICOM request by
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89 // requesting the ScheduledStationAETitle to correspond to the AET
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90 // of the C-Find issuer. This code will make the integration test
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91 // "test_filter_issuer_aet" succeed (cf. the orthanc-tests repository).
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92
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93 static const char* SCHEDULED_PROCEDURE_STEP_SEQUENCE = "0040,0100";
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94 static const char* SCHEDULED_STATION_AETITLE = "0040,0001";
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95 static const char* PREGNANCY_STATUS = "0010,21c0";
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96
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97 if (!json.isMember(SCHEDULED_PROCEDURE_STEP_SEQUENCE))
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98 {
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99 // Create a ScheduledProcedureStepSequence sequence, with one empty element
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100 json[SCHEDULED_PROCEDURE_STEP_SEQUENCE] = Json::arrayValue;
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101 json[SCHEDULED_PROCEDURE_STEP_SEQUENCE].append(Json::objectValue);
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102 }
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103
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104 Json::Value& v = json[SCHEDULED_PROCEDURE_STEP_SEQUENCE];
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105
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106 if (v.type() != Json::arrayValue ||
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107 v.size() != 1 ||
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108 v[0].type() != Json::objectValue)
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109 {
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110 ORTHANC_PLUGINS_THROW_EXCEPTION(BadFileFormat);
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111 }
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112
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113 // Set the ScheduledStationAETitle if none was provided
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114 if (!v[0].isMember(SCHEDULED_STATION_AETITLE) ||
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115 v[0].type() != Json::stringValue ||
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116 v[0][SCHEDULED_STATION_AETITLE].asString().size() == 0 ||
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117 v[0][SCHEDULED_STATION_AETITLE].asString() == "*")
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118 {
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119 v[0][SCHEDULED_STATION_AETITLE] = issuerAet;
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120 }
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121
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122 if (json.isMember(PREGNANCY_STATUS) &&
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123 json[PREGNANCY_STATUS].asString().size() == 0)
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124 {
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125 json.removeMember(PREGNANCY_STATUS);
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126 }
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127
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128 // Encode the modified JSON as a DICOM instance, then convert it to a C-Find matcher
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129 OrthancPlugins::MemoryBuffer modified(context_);
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130 modified.CreateDicom(json, OrthancPluginCreateDicomFlags_None);
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131 return new OrthancPlugins::FindMatcher(context_, modified);
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132 }
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133 }
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134
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135
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136
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137 OrthancPluginErrorCode Callback(OrthancPluginWorklistAnswers* answers,
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138 const OrthancPluginWorklistQuery* query,
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139 const char* issuerAet,
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140 const char* calledAet)
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141 {
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142 try
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143 {
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144 // Construct an object to match the worklists in the database against the C-Find query
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145 std::auto_ptr<OrthancPlugins::FindMatcher> matcher(CreateMatcher(query, issuerAet));
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146
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147 // Loop over the regular files in the database folder
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148 namespace fs = boost::filesystem;
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149
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150 fs::path source(folder_);
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151 fs::directory_iterator end;
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152 int parsedFilesCount = 0;
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153 int matchedWorklistCount = 0;
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154
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155 try
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156 {
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157 for (fs::directory_iterator it(source); it != end; ++it)
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158 {
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159 fs::file_type type(it->status().type());
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160
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161 if (type == fs::regular_file ||
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162 type == fs::reparse_file) // cf. BitBucket issue #11
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163 {
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164 std::string extension = fs::extension(it->path());
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165 std::transform(extension.begin(), extension.end(), extension.begin(), tolower); // Convert to lowercase
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166
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167 if (extension == ".wl")
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168 {
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169 parsedFilesCount++;
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170 // We found a worklist (i.e. a DICOM find with extension ".wl"), match it against the query
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171 if (MatchWorklist(answers, query, *matcher, it->path().string()))
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172 {
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173 OrthancPlugins::LogInfo(context_, "Worklist matched: " + it->path().string());
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174 matchedWorklistCount++;
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175 }
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176 }
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177 }
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178 }
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179
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180 std::ostringstream message;
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181 message << "Worklist C-Find: parsed " << parsedFilesCount << " files, found " << matchedWorklistCount << " match(es)";
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182 OrthancPlugins::LogInfo(context_, message.str());
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183
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184 }
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185 catch (fs::filesystem_error&)
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186 {
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187 OrthancPlugins::LogError(context_, "Inexistent folder while scanning for worklists: " + source.string());
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188 return OrthancPluginErrorCode_DirectoryExpected;
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189 }
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190
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191 // Uncomment the following line if too many answers are to be returned
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192 // OrthancPluginMarkWorklistAnswersIncomplete(context_, answers);
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193
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194 return OrthancPluginErrorCode_Success;
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195 }
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196 catch (OrthancPlugins::PluginException& e)
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197 {
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198 return e.GetErrorCode();
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199 }
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200 }
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201
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202
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203 extern "C"
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204 {
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205 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* c)
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206 {
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207 context_ = c;
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208
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209 /* Check the version of the Orthanc core */
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210 if (OrthancPluginCheckVersion(c) == 0)
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211 {
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212 OrthancPlugins::ReportMinimalOrthancVersion(context_,
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213 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
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214 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
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215 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
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216 return -1;
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217 }
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218
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219 OrthancPlugins::LogWarning(context_, "Sample worklist plugin is initializing");
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220 OrthancPluginSetDescription(context_, "Serve DICOM modality worklists from a folder with Orthanc.");
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221
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diff changeset
222 OrthancPlugins::OrthancConfiguration configuration(context_);
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223
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224 OrthancPlugins::OrthancConfiguration worklists;
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225 configuration.GetSection(worklists, "Worklists");
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226
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227 bool enabled = worklists.GetBooleanValue("Enable", false);
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228 if (enabled)
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229 {
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230 if (worklists.LookupStringValue(folder_, "Database"))
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231 {
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232 OrthancPlugins::LogWarning(context_, "The database of worklists will be read from folder: " + folder_);
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233 OrthancPluginRegisterWorklistCallback(context_, Callback);
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234 }
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235 else
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236 {
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237 OrthancPlugins::LogError(context_, "The configuration option \"Worklists.Database\" must contain a path");
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238 return -1;
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239 }
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240
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241 filterIssuerAet_ = worklists.GetBooleanValue("FilterIssuerAet", false);
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242 }
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243 else
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244 {
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245 OrthancPlugins::LogWarning(context_, "Worklist server is disabled by the configuration file");
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246 }
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247
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248 return 0;
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249 }
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250
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251
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252 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
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253 {
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254 OrthancPluginLogWarning(context_, "Sample worklist plugin is finalizing");
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255 }
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256
138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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257
138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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258 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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259 {
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9c2ffc4e938b configuration of the sample modality worklists plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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260 return "worklists";
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138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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261 }
138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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262
138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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263
138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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264 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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265 {
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9c2ffc4e938b configuration of the sample modality worklists plugin
Sebastien Jodogne <s.jodogne@gmail.com>
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266 return MODALITY_WORKLISTS_VERSION;
1802
138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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267 }
138664eb59de sample worklist plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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268 }