Mercurial > hg > orthanc

annotate OrthancServer/DicomInstanceToStore.cpp @ 3772:a11d1d4b5849 transcoding

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integration mainline->transcoding
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 17 Mar 2020 19:20:15 +0100
parents 2a170a8f1faf
children be7df7fe3d80
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "DicomInstanceToStore.h"
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36
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37 #include "../Core/DicomParsing/FromDcmtkBridge.h"
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38 #include "../Core/DicomParsing/ParsedDicomFile.h"
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39 #include "../Core/Logging.h"
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40 #include "../Core/OrthancException.h"
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41
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42 #include <dcmtk/dcmdata/dcfilefo.h>
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43 #include <dcmtk/dcmdata/dcdeftag.h>
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44
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45
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46 namespace Orthanc
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47 {
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48 // Anonymous namespace to avoid clashes between compilation modules
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49 namespace
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50 {
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51 template <typename T>
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52 class SmartContainer
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53 {
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54 private:
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55 T* content_;
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56 bool toDelete_;
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57 bool isReadOnly_;
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58
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59 void Deallocate()
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60 {
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61 if (content_ && toDelete_)
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62 {
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63 delete content_;
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64 toDelete_ = false;
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65 content_ = NULL;
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66 }
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67 }
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68
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69 public:
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70 SmartContainer() : content_(NULL), toDelete_(false), isReadOnly_(true)
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71 {
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72 }
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73
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74 ~SmartContainer()
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75 {
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76 Deallocate();
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77 }
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78
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79 void Allocate()
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80 {
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81 Deallocate();
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82 content_ = new T;
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83 toDelete_ = true;
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84 isReadOnly_ = false;
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85 }
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86
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87 void TakeOwnership(T* content)
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88 {
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89 if (content == NULL)
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90 {
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91 throw OrthancException(ErrorCode_ParameterOutOfRange);
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92 }
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93
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94 Deallocate();
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95 content_ = content;
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96 toDelete_ = true;
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97 isReadOnly_ = false;
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98 }
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99
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100 void SetReference(T& content) // Read and write assign, without transfering ownership
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101 {
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102 Deallocate();
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103 content_ = &content;
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104 toDelete_ = false;
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105 isReadOnly_ = false;
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106 }
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107
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108 void SetConstReference(const T& content) // Read-only assign, without transfering ownership
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109 {
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110 Deallocate();
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111 content_ = &const_cast<T&>(content);
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112 toDelete_ = false;
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113 isReadOnly_ = true;
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114 }
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115
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116 bool HasContent() const
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117 {
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118 return content_ != NULL;
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119 }
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120
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121 T& GetContent()
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122 {
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123 if (content_ == NULL)
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124 {
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125 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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126 }
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127
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128 if (isReadOnly_)
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129 {
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130 throw OrthancException(ErrorCode_ReadOnly);
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131 }
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132
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133 return *content_;
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134 }
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135
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136 const T& GetConstContent() const
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137 {
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138 if (content_ == NULL)
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139 {
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140 throw OrthancException(ErrorCode_BadSequenceOfCalls);
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141 }
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142
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143 return *content_;
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144 }
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145 };
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146 }
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147
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148
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149 class DicomInstanceToStore::PImpl
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150 {
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151 public:
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152 DicomInstanceOrigin origin_;
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153 SmartContainer<std::string> buffer_;
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154 SmartContainer<ParsedDicomFile> parsed_;
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155 SmartContainer<DicomMap> summary_;
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156 SmartContainer<Json::Value> json_;
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157 MetadataMap metadata_;
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158
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159 private:
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160 std::unique_ptr<DicomInstanceHasher> hasher_;
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161
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162 void ComputeMissingInformation()
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163 {
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164 if (buffer_.HasContent() &&
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165 summary_.HasContent() &&
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166 json_.HasContent())
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167 {
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168 // Fine, everything is available
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169 return;
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170 }
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171
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172 if (!buffer_.HasContent())
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173 {
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174 if (!parsed_.HasContent())
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175 {
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176 if (!summary_.HasContent())
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177 {
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178 throw OrthancException(ErrorCode_NotImplemented);
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179 }
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180 else
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181 {
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182 parsed_.TakeOwnership(new ParsedDicomFile(summary_.GetConstContent(),
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183 GetDefaultDicomEncoding(),
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184 false /* be strict */));
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185 }
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186 }
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187
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188 // Serialize the parsed DICOM file
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189 buffer_.Allocate();
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190 if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer_.GetContent(),
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191 *parsed_.GetContent().GetDcmtkObject().getDataset()))
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192 {
2955
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193 throw OrthancException(ErrorCode_InternalError,
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194 "Unable to serialize a DICOM file to a memory buffer");
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195 }
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196 }
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197
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198 if (summary_.HasContent() &&
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199 json_.HasContent())
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200 {
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201 return;
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202 }
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203
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204 // At this point, we know that the DICOM file is available as a
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205 // memory buffer, but that its summary or its JSON version is
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206 // missing
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207
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208 if (!parsed_.HasContent())
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209 {
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210 parsed_.TakeOwnership(new ParsedDicomFile(buffer_.GetConstContent()));
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211 }
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212
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213 // At this point, we have parsed the DICOM file
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214
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215 if (!summary_.HasContent())
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216 {
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217 summary_.Allocate();
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218 FromDcmtkBridge::ExtractDicomSummary(summary_.GetContent(),
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219 *parsed_.GetContent().GetDcmtkObject().getDataset());
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220 }
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diff changeset
221
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222 if (!json_.HasContent())
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diff changeset
223 {
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224 json_.Allocate();
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225
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diff changeset
226 std::set<DicomTag> ignoreTagLength;
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227 FromDcmtkBridge::ExtractDicomAsJson(json_.GetContent(),
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228 *parsed_.GetContent().GetDcmtkObject().getDataset(),
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diff changeset
229 ignoreTagLength);
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230 }
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231 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
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diff changeset
232
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233
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diff changeset
234 public:
2894
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235 const char* GetBufferData()
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236 {
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237 ComputeMissingInformation();
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238
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diff changeset
239 if (!buffer_.HasContent())
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240 {
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241 throw OrthancException(ErrorCode_InternalError);
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242 }
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diff changeset
243
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diff changeset
244 if (buffer_.GetConstContent().size() == 0)
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245 {
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246 return NULL;
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diff changeset
247 }
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diff changeset
248 else
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249 {
a27b0e9a3fd9 refactoring DicomInstanceToStore
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diff changeset
250 return buffer_.GetConstContent().c_str();
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diff changeset
251 }
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252 }
a27b0e9a3fd9 refactoring DicomInstanceToStore
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diff changeset
253
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diff changeset
254
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diff changeset
255 size_t GetBufferSize()
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diff changeset
256 {
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diff changeset
257 ComputeMissingInformation();
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diff changeset
258
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diff changeset
259 if (!buffer_.HasContent())
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diff changeset
260 {
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diff changeset
261 throw OrthancException(ErrorCode_InternalError);
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diff changeset
262 }
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263
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264 return buffer_.GetConstContent().size();
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265 }
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266
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267
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268 const DicomMap& GetSummary()
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269 {
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270 ComputeMissingInformation();
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271
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272 if (!summary_.HasContent())
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273 {
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274 throw OrthancException(ErrorCode_InternalError);
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275 }
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276
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277 return summary_.GetConstContent();
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278 }
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279
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280
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281 const Json::Value& GetJson()
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282 {
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283 ComputeMissingInformation();
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284
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285 if (!json_.HasContent())
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286 {
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287 throw OrthancException(ErrorCode_InternalError);
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288 }
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289
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290 return json_.GetConstContent();
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291 }
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292
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293
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294 DicomInstanceHasher& GetHasher()
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295 {
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296 if (hasher_.get() == NULL)
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297 {
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298 hasher_.reset(new DicomInstanceHasher(GetSummary()));
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299 }
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300
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301 if (hasher_.get() == NULL)
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302 {
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303 throw OrthancException(ErrorCode_InternalError);
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304 }
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305
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306 return *hasher_;
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307 }
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308
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309
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310 bool LookupTransferSyntax(std::string& result)
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311 {
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312 ComputeMissingInformation();
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313
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314 DicomMap header;
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315 if (DicomMap::ParseDicomMetaInformation(header, GetBufferData(), GetBufferSize()))
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316 {
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317 const DicomValue* value = header.TestAndGetValue(DICOM_TAG_TRANSFER_SYNTAX_UID);
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318 if (value != NULL &&
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319 !value->IsBinary() &&
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320 !value->IsNull())
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321 {
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322 result = Toolbox::StripSpaces(value->GetContent());
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323 return true;
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324 }
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325 }
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326
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327 return false;
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328 }
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329 };
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330
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331
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332 DicomInstanceToStore::DicomInstanceToStore() :
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333 pimpl_(new PImpl)
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334 {
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335 }
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336
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337
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338 void DicomInstanceToStore::SetOrigin(const DicomInstanceOrigin& origin)
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339 {
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340 pimpl_->origin_ = origin;
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341 }
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342
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343
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344 const DicomInstanceOrigin& DicomInstanceToStore::GetOrigin() const
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345 {
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346 return pimpl_->origin_;
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347 }
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348
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349
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350 void DicomInstanceToStore::SetBuffer(const std::string& dicom)
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351 {
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352 pimpl_->buffer_.SetConstReference(dicom);
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353 }
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354
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355
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356 void DicomInstanceToStore::SetParsedDicomFile(ParsedDicomFile& parsed)
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357 {
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358 pimpl_->parsed_.SetReference(parsed);
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359 }
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360
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361
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362 void DicomInstanceToStore::SetSummary(const DicomMap& summary)
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363 {
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364 pimpl_->summary_.SetConstReference(summary);
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365 }
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366
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367
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368 void DicomInstanceToStore::SetJson(const Json::Value& json)
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369 {
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370 pimpl_->json_.SetConstReference(json);
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371 }
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372
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373
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374 const DicomInstanceToStore::MetadataMap& DicomInstanceToStore::GetMetadata() const
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375 {
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376 return pimpl_->metadata_;
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377 }
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378
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379
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380 DicomInstanceToStore::MetadataMap& DicomInstanceToStore::GetMetadata()
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diff changeset
381 {
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382 return pimpl_->metadata_;
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383 }
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384
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385
1004
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diff changeset
386 void DicomInstanceToStore::AddMetadata(ResourceType level,
1003
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parents:
diff changeset
387 MetadataType metadata,
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388 const std::string& value)
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389 {
2894
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diff changeset
390 pimpl_->metadata_[std::make_pair(level, metadata)] = value;
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1d35281d967c DicomInstanceToStore
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391 }
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392
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parents:
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393
1004
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diff changeset
394 const char* DicomInstanceToStore::GetBufferData()
1003
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395 {
2894
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396 return pimpl_->GetBufferData();
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397 }
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398
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399
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400 size_t DicomInstanceToStore::GetBufferSize()
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401 {
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402 return pimpl_->GetBufferSize();
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403 }
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404
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405
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406 const DicomMap& DicomInstanceToStore::GetSummary()
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407 {
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408 return pimpl_->GetSummary();
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409 }
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410
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411
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412 const Json::Value& DicomInstanceToStore::GetJson()
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413 {
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414 return pimpl_->GetJson();
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415 }
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416
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417
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418 bool DicomInstanceToStore::LookupTransferSyntax(std::string& result)
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419 {
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420 return pimpl_->LookupTransferSyntax(result);
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421 }
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422
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423
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424 DicomInstanceHasher& DicomInstanceToStore::GetHasher()
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425 {
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426 return pimpl_->GetHasher();
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427 }
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428 }