Mercurial > hg > orthanc
annotate OrthancServer/ParsedDicomFile.cpp @ 2150:9a272d552c27
fix
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 14 Nov 2016 12:10:07 +0100 |
| parents | 5a8840920121 |
| children | 9b373b7d6713 |
| rev | line source |
|---|---|
| 790 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
| 790 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 10 * | |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 22 * | |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
| 33 | |
| 34 /*========================================================================= | |
| 35 | |
| 36 This file is based on portions of the following project: | |
| 37 | |
| 38 Program: GDCM (Grassroots DICOM). A DICOM library | |
| 39 Module: http://gdcm.sourceforge.net/Copyright.html | |
| 40 | |
| 41 Copyright (c) 2006-2011 Mathieu Malaterre | |
| 42 Copyright (c) 1993-2005 CREATIS | |
| 43 (CREATIS = Centre de Recherche et d'Applications en Traitement de l'Image) | |
| 44 All rights reserved. | |
| 45 | |
| 46 Redistribution and use in source and binary forms, with or without | |
| 47 modification, are permitted provided that the following conditions are met: | |
| 48 | |
| 49 * Redistributions of source code must retain the above copyright notice, | |
| 50 this list of conditions and the following disclaimer. | |
| 51 | |
| 52 * Redistributions in binary form must reproduce the above copyright notice, | |
| 53 this list of conditions and the following disclaimer in the documentation | |
| 54 and/or other materials provided with the distribution. | |
| 55 | |
| 56 * Neither name of Mathieu Malaterre, or CREATIS, nor the names of any | |
| 57 contributors (CNRS, INSERM, UCB, Universite Lyon I), may be used to | |
| 58 endorse or promote products derived from this software without specific | |
| 59 prior written permission. | |
| 60 | |
| 61 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS ``AS IS'' | |
| 62 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE | |
| 63 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE | |
| 64 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR | |
| 65 ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL | |
| 66 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR | |
| 67 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER | |
| 68 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, | |
| 69 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE | |
| 70 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | |
| 71 | |
| 72 =========================================================================*/ | |
| 73 | |
| 74 | |
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75 #include "PrecompiledHeadersServer.h" |
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76 |
| 790 | 77 #ifndef NOMINMAX |
| 78 #define NOMINMAX | |
| 79 #endif | |
| 80 | |
| 81 #include "ParsedDicomFile.h" | |
| 82 | |
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83 #include "OrthancInitialization.h" |
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84 #include "ServerToolbox.h" |
| 790 | 85 #include "FromDcmtkBridge.h" |
| 86 #include "ToDcmtkBridge.h" | |
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87 #include "Internals/DicomFrameIndex.h" |
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88 #include "../Core/Images/JpegReader.h" |
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89 #include "../Core/Images/PngReader.h" |
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90 #include "../Core/Logging.h" |
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91 #include "../Core/OrthancException.h" |
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92 #include "../Core/Toolbox.h" |
| 790 | 93 |
| 94 #include <list> | |
| 95 #include <limits> | |
| 96 | |
| 97 #include <boost/lexical_cast.hpp> | |
| 98 | |
| 99 #include <dcmtk/dcmdata/dcchrstr.h> | |
| 100 #include <dcmtk/dcmdata/dcdicent.h> | |
| 101 #include <dcmtk/dcmdata/dcdict.h> | |
| 102 #include <dcmtk/dcmdata/dcfilefo.h> | |
| 103 #include <dcmtk/dcmdata/dcuid.h> | |
| 104 #include <dcmtk/dcmdata/dcmetinf.h> | |
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105 #include <dcmtk/dcmdata/dcdeftag.h> |
| 790 | 106 |
| 107 #include <dcmtk/dcmdata/dcvrae.h> | |
| 108 #include <dcmtk/dcmdata/dcvras.h> | |
| 109 #include <dcmtk/dcmdata/dcvrcs.h> | |
| 110 #include <dcmtk/dcmdata/dcvrda.h> | |
| 111 #include <dcmtk/dcmdata/dcvrds.h> | |
| 112 #include <dcmtk/dcmdata/dcvrdt.h> | |
| 113 #include <dcmtk/dcmdata/dcvrfd.h> | |
| 114 #include <dcmtk/dcmdata/dcvrfl.h> | |
| 115 #include <dcmtk/dcmdata/dcvris.h> | |
| 116 #include <dcmtk/dcmdata/dcvrlo.h> | |
| 117 #include <dcmtk/dcmdata/dcvrlt.h> | |
| 118 #include <dcmtk/dcmdata/dcvrpn.h> | |
| 119 #include <dcmtk/dcmdata/dcvrsh.h> | |
| 120 #include <dcmtk/dcmdata/dcvrsl.h> | |
| 121 #include <dcmtk/dcmdata/dcvrss.h> | |
| 122 #include <dcmtk/dcmdata/dcvrst.h> | |
| 123 #include <dcmtk/dcmdata/dcvrtm.h> | |
| 124 #include <dcmtk/dcmdata/dcvrui.h> | |
| 125 #include <dcmtk/dcmdata/dcvrul.h> | |
| 126 #include <dcmtk/dcmdata/dcvrus.h> | |
| 127 #include <dcmtk/dcmdata/dcvrut.h> | |
| 128 #include <dcmtk/dcmdata/dcpixel.h> | |
| 129 #include <dcmtk/dcmdata/dcpixseq.h> | |
| 130 #include <dcmtk/dcmdata/dcpxitem.h> | |
| 131 | |
| 132 | |
| 133 #include <boost/math/special_functions/round.hpp> | |
| 134 #include <dcmtk/dcmdata/dcostrmb.h> | |
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135 #include <boost/algorithm/string/predicate.hpp> |
| 790 | 136 |
| 137 | |
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138 #if DCMTK_VERSION_NUMBER <= 360 |
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139 # define EXS_JPEGProcess1 EXS_JPEGProcess1TransferSyntax |
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140 #endif |
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141 |
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142 |
| 790 | 143 static const char* CONTENT_TYPE_OCTET_STREAM = "application/octet-stream"; |
| 144 | |
| 145 | |
| 146 | |
| 147 namespace Orthanc | |
| 148 { | |
| 794 | 149 struct ParsedDicomFile::PImpl |
| 150 { | |
| 151 std::auto_ptr<DcmFileFormat> file_; | |
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152 std::auto_ptr<DicomFrameIndex> frameIndex_; |
| 794 | 153 }; |
| 154 | |
| 155 | |
| 790 | 156 static void SendPathValueForDictionary(RestApiOutput& output, |
| 157 DcmItem& dicom) | |
| 158 { | |
| 159 Json::Value v = Json::arrayValue; | |
| 160 | |
| 161 for (unsigned long i = 0; i < dicom.card(); i++) | |
| 162 { | |
| 163 DcmElement* element = dicom.getElement(i); | |
| 164 if (element) | |
| 165 { | |
| 166 char buf[16]; | |
| 167 sprintf(buf, "%04x-%04x", element->getTag().getGTag(), element->getTag().getETag()); | |
| 168 v.append(buf); | |
| 169 } | |
| 170 } | |
| 171 | |
| 172 output.AnswerJson(v); | |
| 173 } | |
| 174 | |
| 175 static inline uint16_t GetCharValue(char c) | |
| 176 { | |
| 177 if (c >= '0' && c <= '9') | |
| 178 return c - '0'; | |
| 179 else if (c >= 'a' && c <= 'f') | |
| 180 return c - 'a' + 10; | |
| 181 else if (c >= 'A' && c <= 'F') | |
| 182 return c - 'A' + 10; | |
| 183 else | |
| 184 return 0; | |
| 185 } | |
| 186 | |
| 187 static inline uint16_t GetTagValue(const char* c) | |
| 188 { | |
| 189 return ((GetCharValue(c[0]) << 12) + | |
| 190 (GetCharValue(c[1]) << 8) + | |
| 191 (GetCharValue(c[2]) << 4) + | |
| 192 GetCharValue(c[3])); | |
| 193 } | |
| 194 | |
| 195 static void ParseTagAndGroup(DcmTagKey& key, | |
| 196 const std::string& tag) | |
| 197 { | |
| 198 DicomTag t = FromDcmtkBridge::ParseTag(tag); | |
| 199 key = DcmTagKey(t.GetGroup(), t.GetElement()); | |
| 200 } | |
| 201 | |
| 202 | |
| 203 static void SendSequence(RestApiOutput& output, | |
| 204 DcmSequenceOfItems& sequence) | |
| 205 { | |
| 206 // This element is a sequence | |
| 207 Json::Value v = Json::arrayValue; | |
| 208 | |
| 209 for (unsigned long i = 0; i < sequence.card(); i++) | |
| 210 { | |
| 211 v.append(boost::lexical_cast<std::string>(i)); | |
| 212 } | |
| 213 | |
| 214 output.AnswerJson(v); | |
| 215 } | |
| 216 | |
| 217 | |
| 218 static unsigned int GetPixelDataBlockCount(DcmPixelData& pixelData, | |
| 219 E_TransferSyntax transferSyntax) | |
| 220 { | |
| 221 DcmPixelSequence* pixelSequence = NULL; | |
| 222 if (pixelData.getEncapsulatedRepresentation | |
| 223 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
| 224 { | |
| 225 return pixelSequence->card(); | |
| 226 } | |
| 227 else | |
| 228 { | |
| 229 return 1; | |
| 230 } | |
| 231 } | |
| 232 | |
| 233 | |
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234 namespace |
| 790 | 235 { |
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236 class DicomFieldStream : public IHttpStreamAnswer |
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237 { |
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238 private: |
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239 DcmElement& element_; |
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240 uint32_t length_; |
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241 uint32_t offset_; |
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242 std::string chunk_; |
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243 size_t chunkSize_; |
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244 |
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245 public: |
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246 DicomFieldStream(DcmElement& element, |
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247 E_TransferSyntax transferSyntax) : |
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248 element_(element), |
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249 length_(element.getLength(transferSyntax)), |
| 1616 | 250 offset_(0), |
| 251 chunkSize_(0) | |
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252 { |
| 1521 | 253 static const size_t CHUNK_SIZE = 64 * 1024; // Use chunks of max 64KB |
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254 chunk_.resize(CHUNK_SIZE); |
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255 } |
| 790 | 256 |
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257 virtual HttpCompression SetupHttpCompression(bool /*gzipAllowed*/, |
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258 bool /*deflateAllowed*/) |
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259 { |
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260 // No support for compression |
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261 return HttpCompression_None; |
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262 } |
| 790 | 263 |
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264 virtual bool HasContentFilename(std::string& filename) |
| 790 | 265 { |
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266 return false; |
| 790 | 267 } |
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268 |
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269 virtual std::string GetContentType() |
| 790 | 270 { |
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271 return ""; |
| 790 | 272 } |
| 273 | |
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274 virtual uint64_t GetContentLength() |
| 790 | 275 { |
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276 return length_; |
| 790 | 277 } |
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278 |
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279 virtual bool ReadNextChunk() |
| 790 | 280 { |
| 1520 | 281 assert(offset_ <= length_); |
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282 |
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283 if (offset_ == length_) |
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284 { |
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285 return false; |
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286 } |
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287 else |
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288 { |
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289 if (length_ - offset_ < chunk_.size()) |
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290 { |
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291 chunkSize_ = length_ - offset_; |
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292 } |
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293 else |
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294 { |
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295 chunkSize_ = chunk_.size(); |
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296 } |
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297 |
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298 OFCondition cond = element_.getPartialValue(&chunk_[0], offset_, chunkSize_); |
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299 |
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300 offset_ += chunkSize_; |
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301 |
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302 if (!cond.good()) |
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303 { |
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304 LOG(ERROR) << "Error while sending a DICOM field: " << cond.text(); |
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305 throw OrthancException(ErrorCode_InternalError); |
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306 } |
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307 |
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308 return true; |
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309 } |
| 790 | 310 } |
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311 |
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312 virtual const char *GetChunkContent() |
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313 { |
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314 return chunk_.c_str(); |
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315 } |
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316 |
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317 virtual size_t GetChunkSize() |
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318 { |
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319 return chunkSize_; |
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320 } |
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321 }; |
| 790 | 322 } |
| 323 | |
| 324 | |
| 325 static bool AnswerPixelData(RestApiOutput& output, | |
| 326 DcmItem& dicom, | |
| 327 E_TransferSyntax transferSyntax, | |
| 328 const std::string* blockUri) | |
| 329 { | |
| 330 DcmTag k(DICOM_TAG_PIXEL_DATA.GetGroup(), | |
| 331 DICOM_TAG_PIXEL_DATA.GetElement()); | |
| 332 | |
| 333 DcmElement *element = NULL; | |
| 334 if (!dicom.findAndGetElement(k, element).good() || | |
| 335 element == NULL) | |
| 336 { | |
| 337 return false; | |
| 338 } | |
| 339 | |
| 340 try | |
| 341 { | |
| 342 DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element); | |
| 343 if (blockUri == NULL) | |
| 344 { | |
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345 // The user asks how many blocks are present in this pixel data |
| 790 | 346 unsigned int blocks = GetPixelDataBlockCount(pixelData, transferSyntax); |
| 347 | |
| 348 Json::Value result(Json::arrayValue); | |
| 349 for (unsigned int i = 0; i < blocks; i++) | |
| 350 { | |
| 351 result.append(boost::lexical_cast<std::string>(i)); | |
| 352 } | |
| 353 | |
| 354 output.AnswerJson(result); | |
| 355 return true; | |
| 356 } | |
| 357 | |
| 358 | |
| 359 unsigned int block = boost::lexical_cast<unsigned int>(*blockUri); | |
| 360 | |
| 361 if (block < GetPixelDataBlockCount(pixelData, transferSyntax)) | |
| 362 { | |
| 363 DcmPixelSequence* pixelSequence = NULL; | |
| 364 if (pixelData.getEncapsulatedRepresentation | |
| 365 (transferSyntax, NULL, pixelSequence).good() && pixelSequence) | |
| 366 { | |
| 367 // This is the case for JPEG transfer syntaxes | |
| 368 if (block < pixelSequence->card()) | |
| 369 { | |
| 370 DcmPixelItem* pixelItem = NULL; | |
| 371 if (pixelSequence->getItem(pixelItem, block).good() && pixelItem) | |
| 372 { | |
| 373 if (pixelItem->getLength() == 0) | |
| 374 { | |
| 375 output.AnswerBuffer(NULL, 0, CONTENT_TYPE_OCTET_STREAM); | |
| 376 return true; | |
| 377 } | |
| 378 | |
| 379 Uint8* buffer = NULL; | |
| 380 if (pixelItem->getUint8Array(buffer).good() && buffer) | |
| 381 { | |
| 382 output.AnswerBuffer(buffer, pixelItem->getLength(), CONTENT_TYPE_OCTET_STREAM); | |
| 383 return true; | |
| 384 } | |
| 385 } | |
| 386 } | |
| 387 } | |
| 388 else | |
| 389 { | |
| 390 // This is the case for raw, uncompressed image buffers | |
| 391 assert(*blockUri == "0"); | |
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392 DicomFieldStream stream(*element, transferSyntax); |
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393 output.AnswerStream(stream); |
| 790 | 394 } |
| 395 } | |
| 396 } | |
| 397 catch (boost::bad_lexical_cast&) | |
| 398 { | |
| 399 // The URI entered by the user is not a number | |
| 400 } | |
| 401 catch (std::bad_cast&) | |
| 402 { | |
| 403 // This should never happen | |
| 404 } | |
| 405 | |
| 406 return false; | |
| 407 } | |
| 408 | |
| 409 | |
| 410 | |
| 411 static void SendPathValueForLeaf(RestApiOutput& output, | |
| 412 const std::string& tag, | |
| 413 DcmItem& dicom, | |
| 414 E_TransferSyntax transferSyntax) | |
| 415 { | |
| 416 DcmTagKey k; | |
| 417 ParseTagAndGroup(k, tag); | |
| 418 | |
| 419 DcmSequenceOfItems* sequence = NULL; | |
| 420 if (dicom.findAndGetSequence(k, sequence).good() && | |
| 421 sequence != NULL && | |
| 422 sequence->getVR() == EVR_SQ) | |
| 423 { | |
| 424 SendSequence(output, *sequence); | |
| 425 return; | |
| 426 } | |
| 427 | |
| 428 DcmElement* element = NULL; | |
| 429 if (dicom.findAndGetElement(k, element).good() && | |
| 430 element != NULL && | |
| 431 //element->getVR() != EVR_UNKNOWN && // This would forbid private tags | |
| 432 element->getVR() != EVR_SQ) | |
| 433 { | |
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434 DicomFieldStream stream(*element, transferSyntax); |
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435 output.AnswerStream(stream); |
| 790 | 436 } |
| 437 } | |
| 438 | |
| 439 void ParsedDicomFile::SendPathValue(RestApiOutput& output, | |
| 440 const UriComponents& uri) | |
| 441 { | |
| 794 | 442 DcmItem* dicom = pimpl_->file_->getDataset(); |
| 443 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer(); | |
| 790 | 444 |
| 445 // Special case: Accessing the pixel data | |
| 446 if (uri.size() == 1 || | |
| 447 uri.size() == 2) | |
| 448 { | |
| 449 DcmTagKey tag; | |
| 450 ParseTagAndGroup(tag, uri[0]); | |
| 451 | |
| 452 if (tag.getGroup() == DICOM_TAG_PIXEL_DATA.GetGroup() && | |
| 453 tag.getElement() == DICOM_TAG_PIXEL_DATA.GetElement()) | |
| 454 { | |
| 455 AnswerPixelData(output, *dicom, transferSyntax, uri.size() == 1 ? NULL : &uri[1]); | |
| 456 return; | |
| 457 } | |
| 458 } | |
| 459 | |
| 460 // Go down in the tag hierarchy according to the URI | |
| 461 for (size_t pos = 0; pos < uri.size() / 2; pos++) | |
| 462 { | |
| 463 size_t index; | |
| 464 try | |
| 465 { | |
| 466 index = boost::lexical_cast<size_t>(uri[2 * pos + 1]); | |
| 467 } | |
| 468 catch (boost::bad_lexical_cast&) | |
| 469 { | |
| 470 return; | |
| 471 } | |
| 472 | |
| 473 DcmTagKey k; | |
| 474 DcmItem *child = NULL; | |
| 475 ParseTagAndGroup(k, uri[2 * pos]); | |
| 476 if (!dicom->findAndGetSequenceItem(k, child, index).good() || | |
| 477 child == NULL) | |
| 478 { | |
| 479 return; | |
| 480 } | |
| 481 | |
| 482 dicom = child; | |
| 483 } | |
| 484 | |
| 485 // We have reached the end of the URI | |
| 486 if (uri.size() % 2 == 0) | |
| 487 { | |
| 488 SendPathValueForDictionary(output, *dicom); | |
| 489 } | |
| 490 else | |
| 491 { | |
| 492 SendPathValueForLeaf(output, uri.back(), *dicom, transferSyntax); | |
| 493 } | |
| 494 } | |
| 495 | |
| 496 | |
| 497 void ParsedDicomFile::Remove(const DicomTag& tag) | |
| 498 { | |
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499 InvalidateCache(); |
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500 |
| 790 | 501 DcmTagKey key(tag.GetGroup(), tag.GetElement()); |
| 794 | 502 DcmElement* element = pimpl_->file_->getDataset()->remove(key); |
| 790 | 503 if (element != NULL) |
| 504 { | |
| 505 delete element; | |
| 506 } | |
| 507 } | |
| 508 | |
| 509 | |
| 510 | |
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511 void ParsedDicomFile::RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep) |
| 790 | 512 { |
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513 InvalidateCache(); |
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514 |
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515 DcmDataset& dataset = *pimpl_->file_->getDataset(); |
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516 |
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517 // Loop over the dataset to detect its private tags |
| 790 | 518 typedef std::list<DcmElement*> Tags; |
| 519 Tags privateTags; | |
| 520 | |
| 521 for (unsigned long i = 0; i < dataset.card(); i++) | |
| 522 { | |
| 523 DcmElement* element = dataset.getElement(i); | |
| 524 DcmTag tag(element->getTag()); | |
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525 |
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526 // Is this a private tag? |
| 1694 | 527 if (tag.isPrivate()) |
| 790 | 528 { |
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529 bool remove = true; |
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530 |
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531 // Check whether this private tag is to be kept |
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532 if (toKeep != NULL) |
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533 { |
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534 DicomTag tmp = FromDcmtkBridge::Convert(tag); |
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535 if (toKeep->find(tmp) != toKeep->end()) |
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536 { |
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537 remove = false; // Keep it |
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538 } |
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539 } |
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540 |
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541 if (remove) |
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542 { |
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543 privateTags.push_back(element); |
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544 } |
| 790 | 545 } |
| 546 } | |
| 547 | |
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548 // Loop over the detected private tags to remove them |
| 790 | 549 for (Tags::iterator it = privateTags.begin(); |
| 550 it != privateTags.end(); ++it) | |
| 551 { | |
| 552 DcmElement* tmp = dataset.remove(*it); | |
| 553 if (tmp != NULL) | |
| 554 { | |
| 555 delete tmp; | |
| 556 } | |
| 557 } | |
| 558 } | |
| 559 | |
| 560 | |
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561 static void InsertInternal(DcmDataset& dicom, |
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562 DcmElement* element) |
| 790 | 563 { |
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564 OFCondition cond = dicom.insert(element, false, false); |
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565 if (!cond.good()) |
| 790 | 566 { |
| 567 // This field already exists | |
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568 delete element; |
| 790 | 569 throw OrthancException(ErrorCode_InternalError); |
| 570 } | |
| 571 } | |
| 572 | |
| 573 | |
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574 void ParsedDicomFile::Insert(const DicomTag& tag, |
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575 const Json::Value& value, |
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576 bool decodeDataUriScheme) |
| 790 | 577 { |
|
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578 if (pimpl_->file_->getDataset()->tagExists(ToDcmtkBridge::Convert(tag))) |
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579 { |
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580 throw OrthancException(ErrorCode_AlreadyExistingTag); |
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581 } |
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582 |
|
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583 if (decodeDataUriScheme && |
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584 value.type() == Json::stringValue && |
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585 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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586 tag == DICOM_TAG_PIXEL_DATA)) |
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587 { |
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588 if (EmbedContentInternal(value.asString())) |
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589 { |
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590 return; |
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591 } |
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592 } |
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593 |
|
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594 InvalidateCache(); |
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595 std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding())); |
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596 InsertInternal(*pimpl_->file_->getDataset(), element.release()); |
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597 } |
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598 |
| 790 | 599 |
|
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600 static bool CanReplaceProceed(DcmDataset& dicom, |
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601 const DcmTagKey& tag, |
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602 DicomReplaceMode mode) |
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603 { |
| 1979 | 604 if (dicom.findAndDeleteElement(tag).good()) |
| 790 | 605 { |
| 1979 | 606 // This tag was existing, it has been deleted |
| 607 return true; | |
| 608 } | |
| 609 else | |
| 610 { | |
| 611 // This tag was absent, act wrt. the specified "mode" | |
| 790 | 612 switch (mode) |
| 613 { | |
| 614 case DicomReplaceMode_InsertIfAbsent: | |
| 1979 | 615 return true; |
| 790 | 616 |
| 617 case DicomReplaceMode_ThrowIfAbsent: | |
| 618 throw OrthancException(ErrorCode_InexistentItem); | |
| 619 | |
| 620 case DicomReplaceMode_IgnoreIfAbsent: | |
| 1979 | 621 return false; |
| 622 | |
| 623 default: | |
| 624 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 790 | 625 } |
| 626 } | |
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627 } |
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628 |
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629 |
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630 void ParsedDicomFile::UpdateStorageUid(const DicomTag& tag, |
| 1695 | 631 const std::string& utf8Value, |
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632 bool decodeDataUriScheme) |
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633 { |
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634 if (tag != DICOM_TAG_SOP_CLASS_UID && |
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635 tag != DICOM_TAG_SOP_INSTANCE_UID) |
| 790 | 636 { |
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637 return; |
| 790 | 638 } |
| 639 | |
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640 std::string binary; |
| 1695 | 641 const std::string* decoded = &utf8Value; |
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642 |
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643 if (decodeDataUriScheme && |
| 1695 | 644 boost::starts_with(utf8Value, "data:application/octet-stream;base64,")) |
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645 { |
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646 std::string mime; |
|
1981
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return code in Toolbox::DecodeDataUriScheme
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647 if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value)) |
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return code in Toolbox::DecodeDataUriScheme
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648 { |
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649 throw OrthancException(ErrorCode_BadFileFormat); |
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650 } |
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651 |
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652 decoded = &binary; |
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653 } |
| 1695 | 654 else |
| 655 { | |
| 656 Encoding encoding = GetEncoding(); | |
| 657 if (GetEncoding() != Encoding_Utf8) | |
| 658 { | |
| 659 binary = Toolbox::ConvertFromUtf8(utf8Value, encoding); | |
| 660 decoded = &binary; | |
| 661 } | |
| 662 } | |
| 790 | 663 |
| 664 /** | |
| 665 * dcmodify will automatically correct 'Media Storage SOP Class | |
| 666 * UID' and 'Media Storage SOP Instance UID' in the metaheader, if | |
| 667 * you make changes to the related tags in the dataset ('SOP Class | |
| 668 * UID' and 'SOP Instance UID') via insert or modify mode | |
| 669 * options. You can disable this behaviour by using the -nmu | |
| 670 * option. | |
| 671 **/ | |
| 672 | |
| 673 if (tag == DICOM_TAG_SOP_CLASS_UID) | |
| 674 { | |
|
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675 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID, *decoded); |
| 790 | 676 } |
| 677 | |
| 678 if (tag == DICOM_TAG_SOP_INSTANCE_UID) | |
| 679 { | |
|
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680 ReplacePlainString(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID, *decoded); |
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681 } |
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|
682 } |
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|
683 |
|
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|
684 |
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|
685 void ParsedDicomFile::Replace(const DicomTag& tag, |
| 1695 | 686 const std::string& utf8Value, |
|
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687 bool decodeDataUriScheme, |
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688 DicomReplaceMode mode) |
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689 { |
|
1924
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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|
690 InvalidateCache(); |
|
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|
691 |
|
1982
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1981
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|
692 DcmDataset& dicom = *pimpl_->file_->getDataset(); |
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1981
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693 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
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1981
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|
694 { |
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1981
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|
695 // Either the tag was previously existing (and now removed), or |
|
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Modification of instances can now replace PixelData
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parents:
1981
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|
696 // the replace mode was set to "InsertIfAbsent" |
| 1979 | 697 |
|
1982
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698 if (decodeDataUriScheme && |
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699 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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700 tag == DICOM_TAG_PIXEL_DATA)) |
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1981
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|
701 { |
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|
702 if (EmbedContentInternal(utf8Value)) |
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1981
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|
703 { |
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|
704 return; |
|
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1981
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|
705 } |
|
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1981
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|
706 } |
|
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Modification of instances can now replace PixelData
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1981
diff
changeset
|
707 |
|
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|
708 std::auto_ptr<DcmElement> element(FromDcmtkBridge::CreateElementForTag(tag)); |
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709 FromDcmtkBridge::FillElementWithString(*element, tag, utf8Value, decodeDataUriScheme, GetEncoding()); |
|
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|
710 |
| 1979 | 711 InsertInternal(dicom, element.release()); |
| 712 UpdateStorageUid(tag, utf8Value, false); | |
| 713 } | |
|
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|
714 } |
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|
715 |
|
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|
716 |
|
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|
717 void ParsedDicomFile::Replace(const DicomTag& tag, |
|
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718 const Json::Value& value, |
|
1818
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719 bool decodeDataUriScheme, |
|
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|
720 DicomReplaceMode mode) |
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|
721 { |
|
1924
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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|
722 InvalidateCache(); |
|
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|
723 |
|
1982
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Modification of instances can now replace PixelData
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1981
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|
724 DcmDataset& dicom = *pimpl_->file_->getDataset(); |
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1981
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|
725 if (CanReplaceProceed(dicom, ToDcmtkBridge::Convert(tag), mode)) |
|
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1981
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|
726 { |
|
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1981
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|
727 // Either the tag was previously existing (and now removed), or |
|
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1981
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|
728 // the replace mode was set to "InsertIfAbsent" |
|
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|
729 |
|
1982
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Modification of instances can now replace PixelData
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1981
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|
730 if (decodeDataUriScheme && |
|
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1981
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|
731 value.type() == Json::stringValue && |
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1981
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|
732 (tag == DICOM_TAG_ENCAPSULATED_DOCUMENT || |
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|
733 tag == DICOM_TAG_PIXEL_DATA)) |
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1981
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|
734 { |
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Modification of instances can now replace PixelData
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1981
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|
735 if (EmbedContentInternal(value.asString())) |
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1981
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|
736 { |
|
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1981
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|
737 return; |
|
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1981
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|
738 } |
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Modification of instances can now replace PixelData
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|
739 } |
|
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Modification of instances can now replace PixelData
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1981
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|
740 |
|
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Modification of instances can now replace PixelData
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diff
changeset
|
741 InsertInternal(dicom, FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, GetEncoding())); |
| 1979 | 742 |
| 743 if (tag == DICOM_TAG_SOP_CLASS_UID || | |
| 744 tag == DICOM_TAG_SOP_INSTANCE_UID) | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
745 { |
| 1979 | 746 if (value.type() != Json::stringValue) |
| 747 { | |
| 748 throw OrthancException(ErrorCode_BadParameterType); | |
| 749 } | |
| 750 | |
| 751 UpdateStorageUid(tag, value.asString(), decodeDataUriScheme); | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
752 } |
| 790 | 753 } |
| 754 } | |
| 755 | |
| 756 | |
| 757 void ParsedDicomFile::Answer(RestApiOutput& output) | |
| 758 { | |
| 759 std::string serialized; | |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
760 if (FromDcmtkBridge::SaveToMemoryBuffer(serialized, *pimpl_->file_->getDataset())) |
| 790 | 761 { |
| 762 output.AnswerBuffer(serialized, CONTENT_TYPE_OCTET_STREAM); | |
| 763 } | |
| 764 } | |
| 765 | |
| 766 | |
| 767 | |
| 768 bool ParsedDicomFile::GetTagValue(std::string& value, | |
| 769 const DicomTag& tag) | |
| 770 { | |
| 771 DcmTagKey k(tag.GetGroup(), tag.GetElement()); | |
| 794 | 772 DcmDataset& dataset = *pimpl_->file_->getDataset(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
773 |
|
1818
1065401501fb
ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1805
diff
changeset
|
774 if (tag.IsPrivate() || |
|
1655
e40fd0d925c5
/tools/create-dicom can create tags with unknown VR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1641
diff
changeset
|
775 FromDcmtkBridge::IsUnknownTag(tag) || |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
776 tag == DICOM_TAG_PIXEL_DATA || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
777 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
| 790 | 778 { |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
779 const Uint8* data = NULL; // This is freed in the destructor of the dataset |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
780 long unsigned int count = 0; |
| 790 | 781 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
782 if (dataset.findAndGetUint8Array(k, data, &count).good()) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
783 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
784 if (count > 0) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
785 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
786 assert(data != NULL); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
787 value.assign(reinterpret_cast<const char*>(data), count); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
788 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
789 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
790 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
791 value.clear(); |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
792 } |
| 790 | 793 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
794 return true; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
795 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
796 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
797 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
798 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
799 } |
| 790 | 800 } |
| 801 else | |
| 802 { | |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
803 DcmElement* element = NULL; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
804 if (!dataset.findAndGetElement(k, element).good() || |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
805 element == NULL) |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
806 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
807 return false; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
808 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
809 |
|
1736
b953c6eef28d
ToJson: IncludePrivateTags and IncludeUnknownTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1735
diff
changeset
|
810 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement |
|
1929
cda5b0ab4ce5
ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1928
diff
changeset
|
811 (*element, DicomToJsonFlags_Default, |
|
cda5b0ab4ce5
ORTHANC_MAXIMUM_TAG_LENGTH made explicit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1928
diff
changeset
|
812 ORTHANC_MAXIMUM_TAG_LENGTH, GetEncoding())); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
813 |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
814 if (v.get() == NULL || |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
815 v->IsNull()) |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
816 { |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
817 value = ""; |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
818 } |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
819 else |
|
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
820 { |
|
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
821 // TODO v->IsBinary() |
|
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1736
diff
changeset
|
822 value = v->GetContent(); |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
823 } |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
824 |
|
1307
f796207e3df1
Fix replacement and insertion of private DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
825 return true; |
| 790 | 826 } |
| 827 } | |
| 828 | |
| 829 | |
| 830 DicomInstanceHasher ParsedDicomFile::GetHasher() | |
| 831 { | |
| 832 std::string patientId, studyUid, seriesUid, instanceUid; | |
| 833 | |
| 834 if (!GetTagValue(patientId, DICOM_TAG_PATIENT_ID) || | |
| 835 !GetTagValue(studyUid, DICOM_TAG_STUDY_INSTANCE_UID) || | |
| 836 !GetTagValue(seriesUid, DICOM_TAG_SERIES_INSTANCE_UID) || | |
| 837 !GetTagValue(instanceUid, DICOM_TAG_SOP_INSTANCE_UID)) | |
| 838 { | |
| 839 throw OrthancException(ErrorCode_BadFileFormat); | |
| 840 } | |
| 841 | |
| 842 return DicomInstanceHasher(patientId, studyUid, seriesUid, instanceUid); | |
| 843 } | |
| 844 | |
| 845 | |
| 846 void ParsedDicomFile::SaveToMemoryBuffer(std::string& buffer) | |
| 847 { | |
|
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
848 FromDcmtkBridge::SaveToMemoryBuffer(buffer, *pimpl_->file_->getDataset()); |
| 790 | 849 } |
| 850 | |
| 851 | |
| 852 void ParsedDicomFile::SaveToFile(const std::string& path) | |
| 853 { | |
| 854 // TODO Avoid using a temporary memory buffer, write directly on disk | |
| 855 std::string content; | |
| 856 SaveToMemoryBuffer(content); | |
| 2140 | 857 SystemToolbox::WriteFile(content, path); |
| 790 | 858 } |
| 859 | |
| 860 | |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
861 ParsedDicomFile::ParsedDicomFile(bool createIdentifiers) : pimpl_(new PImpl) |
| 790 | 862 { |
| 794 | 863 pimpl_->file_.reset(new DcmFileFormat); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
864 |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
865 if (createIdentifiers) |
|
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
866 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
867 ReplacePlainString(DICOM_TAG_PATIENT_ID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
868 ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Study)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
869 ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Series)); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
870 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
|
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
871 } |
| 790 | 872 } |
| 873 | |
| 791 | 874 |
|
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
875 ParsedDicomFile::ParsedDicomFile(const DicomMap& map) : pimpl_(new PImpl) |
|
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
876 { |
|
1787
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
877 std::auto_ptr<DcmDataset> dataset(ToDcmtkBridge::Convert(map)); |
|
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
878 |
|
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
879 // NOTE: This implies an unnecessary memory copy of the dataset, but no way to get around |
|
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
880 // http://support.dcmtk.org/redmine/issues/544 |
|
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
881 std::auto_ptr<DcmFileFormat> fileFormat(new DcmFileFormat(dataset.get())); |
|
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
882 |
|
1b1d5470233f
refactoring of DicomFindAnswers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1786
diff
changeset
|
883 pimpl_->file_.reset(fileFormat.release()); |
|
1786
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
884 } |
|
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
885 |
|
164d78911382
primitives to handle dicom worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1781
diff
changeset
|
886 |
|
1800
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
887 ParsedDicomFile::ParsedDicomFile(const void* content, |
|
30e97a1f4093
callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1788
diff
changeset
|
888 size_t size) : pimpl_(new PImpl) |
| 791 | 889 { |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
890 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(content, size)); |
| 791 | 891 } |
| 892 | |
| 794 | 893 ParsedDicomFile::ParsedDicomFile(const std::string& content) : pimpl_(new PImpl) |
| 791 | 894 { |
| 895 if (content.size() == 0) | |
| 896 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
897 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(NULL, 0)); |
| 791 | 898 } |
| 899 else | |
| 900 { | |
|
1935
e251606c1433
FromDcmtkBridge::LoadFromMemoryBuffer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
901 pimpl_->file_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(&content[0], content.size())); |
| 791 | 902 } |
| 903 } | |
| 792 | 904 |
| 905 | |
| 794 | 906 ParsedDicomFile::ParsedDicomFile(ParsedDicomFile& other) : |
| 907 pimpl_(new PImpl) | |
| 792 | 908 { |
| 794 | 909 pimpl_->file_.reset(dynamic_cast<DcmFileFormat*>(other.pimpl_->file_->clone())); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
910 |
|
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
911 // Create a new instance-level identifier |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
912 ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Instance)); |
| 792 | 913 } |
| 914 | |
| 915 | |
|
1788
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
916 ParsedDicomFile::ParsedDicomFile(DcmDataset& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
917 { |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
918 pimpl_->file_.reset(new DcmFileFormat(&dicom)); |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
919 } |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
920 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
921 |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
922 ParsedDicomFile::ParsedDicomFile(DcmFileFormat& dicom) : pimpl_(new PImpl) |
|
6a2d507ef064
getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1787
diff
changeset
|
923 { |
|
6a2d507ef064
getting rid of opaque data structures
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parents:
1787
diff
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|
924 pimpl_->file_.reset(new DcmFileFormat(dicom)); |
|
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getting rid of opaque data structures
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parents:
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diff
changeset
|
925 } |
|
6a2d507ef064
getting rid of opaque data structures
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parents:
1787
diff
changeset
|
926 |
|
6a2d507ef064
getting rid of opaque data structures
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parents:
1787
diff
changeset
|
927 |
| 792 | 928 ParsedDicomFile::~ParsedDicomFile() |
| 929 { | |
| 794 | 930 delete pimpl_; |
| 792 | 931 } |
| 932 | |
| 793 | 933 |
|
1824
b530c3dfe2a6
refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1818
diff
changeset
|
934 DcmFileFormat& ParsedDicomFile::GetDcmtkObject() const |
| 793 | 935 { |
|
1788
6a2d507ef064
getting rid of opaque data structures
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parents:
1787
diff
changeset
|
936 return *pimpl_->file_.get(); |
| 793 | 937 } |
| 938 | |
| 939 | |
| 940 ParsedDicomFile* ParsedDicomFile::Clone() | |
| 941 { | |
| 794 | 942 return new ParsedDicomFile(*this); |
| 793 | 943 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
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parents:
799
diff
changeset
|
944 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
945 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
946 bool ParsedDicomFile::EmbedContentInternal(const std::string& dataUriScheme) |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
947 { |
|
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1616
diff
changeset
|
948 std::string mime, content; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
949 if (!Toolbox::DecodeDataUriScheme(mime, content, dataUriScheme)) |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
950 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
951 return false; |
|
1981
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
952 } |
|
4b545a8b1f95
return code in Toolbox::DecodeDataUriScheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1980
diff
changeset
|
953 |
| 1562 | 954 Toolbox::ToLowerCase(mime); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
955 |
|
1781
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
956 if (mime == "image/png" || |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
957 mime == "image/jpeg") |
| 1562 | 958 { |
| 959 EmbedImage(mime, content); | |
| 960 } | |
| 961 else if (mime == "application/pdf") | |
| 962 { | |
| 963 EmbedPdf(content); | |
| 964 } | |
| 965 else | |
| 966 { | |
|
1693
558b25228a23
creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1689
diff
changeset
|
967 LOG(ERROR) << "Unsupported MIME type for the content of a new DICOM file: " << mime; |
| 1562 | 968 throw OrthancException(ErrorCode_NotImplemented); |
| 969 } | |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
970 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
971 return true; |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
972 } |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
973 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
974 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
975 void ParsedDicomFile::EmbedContent(const std::string& dataUriScheme) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
976 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
977 if (!EmbedContentInternal(dataUriScheme)) |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
978 { |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
979 throw OrthancException(ErrorCode_BadFileFormat); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
980 } |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
981 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
982 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
983 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
984 void ParsedDicomFile::EmbedImage(const std::string& mime, |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
985 const std::string& content) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
986 { |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
987 if (mime == "image/png") |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
988 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
989 PngReader reader; |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
990 reader.ReadFromMemory(content); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
991 EmbedImage(reader); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
992 } |
|
1781
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
993 else if (mime == "image/jpeg") |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
994 { |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
995 JpegReader reader; |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
996 reader.ReadFromMemory(content); |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
997 EmbedImage(reader); |
|
5ad4e4d92ecb
AcceptMediaDispatcher bootstrap
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1737
diff
changeset
|
998 } |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
999 else |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1000 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1001 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1002 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1003 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1004 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1005 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1006 void ParsedDicomFile::EmbedImage(const ImageAccessor& accessor) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1007 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1008 if (accessor.GetFormat() != PixelFormat_Grayscale8 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1009 accessor.GetFormat() != PixelFormat_Grayscale16 && |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1010 accessor.GetFormat() != PixelFormat_SignedGrayscale16 && |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1011 accessor.GetFormat() != PixelFormat_RGB24 && |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1012 accessor.GetFormat() != PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1013 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1014 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1015 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1016 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1017 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1018 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1019 if (accessor.GetFormat() == PixelFormat_RGBA32) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1020 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1021 LOG(WARNING) << "Getting rid of the alpha channel when embedding a RGBA image inside DICOM"; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1022 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1023 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1024 // http://dicomiseasy.blogspot.be/2012/08/chapter-12-pixel-data.html |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1025 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1026 Remove(DICOM_TAG_PIXEL_DATA); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1027 ReplacePlainString(DICOM_TAG_COLUMNS, boost::lexical_cast<std::string>(accessor.GetWidth())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1028 ReplacePlainString(DICOM_TAG_ROWS, boost::lexical_cast<std::string>(accessor.GetHeight())); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1029 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "1"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1030 ReplacePlainString(DICOM_TAG_NUMBER_OF_FRAMES, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1031 |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1032 if (accessor.GetFormat() == PixelFormat_SignedGrayscale16) |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1033 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1034 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "1"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1035 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1036 else |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1037 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1038 ReplacePlainString(DICOM_TAG_PIXEL_REPRESENTATION, "0"); // Unsigned pixels |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1039 } |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1040 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1041 ReplacePlainString(DICOM_TAG_PLANAR_CONFIGURATION, "0"); // Color channels are interleaved |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1042 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "MONOCHROME2"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1043 |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1044 unsigned int bytesPerPixel = 0; |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1045 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1046 switch (accessor.GetFormat()) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1047 { |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1048 case PixelFormat_Grayscale8: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1049 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1050 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1051 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1052 bytesPerPixel = 1; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1053 break; |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1054 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1055 case PixelFormat_RGB24: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1056 case PixelFormat_RGBA32: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1057 ReplacePlainString(DICOM_TAG_PHOTOMETRIC_INTERPRETATION, "RGB"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1058 ReplacePlainString(DICOM_TAG_SAMPLES_PER_PIXEL, "3"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1059 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1060 ReplacePlainString(DICOM_TAG_BITS_STORED, "8"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1061 ReplacePlainString(DICOM_TAG_HIGH_BIT, "7"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1062 bytesPerPixel = 3; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1063 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1064 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1065 case PixelFormat_Grayscale16: |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1066 case PixelFormat_SignedGrayscale16: |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1067 ReplacePlainString(DICOM_TAG_BITS_ALLOCATED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1068 ReplacePlainString(DICOM_TAG_BITS_STORED, "16"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1069 ReplacePlainString(DICOM_TAG_HIGH_BIT, "15"); |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1070 bytesPerPixel = 2; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1071 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1072 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1073 default: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1074 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1075 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1076 |
|
1941
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1077 assert(bytesPerPixel != 0); |
|
d7b176f7dd1b
test dicom patterns
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1935
diff
changeset
|
1078 |
|
800
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1079 DcmTag key(DICOM_TAG_PIXEL_DATA.GetGroup(), |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1080 DICOM_TAG_PIXEL_DATA.GetElement()); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1081 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1082 std::auto_ptr<DcmPixelData> pixels(new DcmPixelData(key)); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1083 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1084 unsigned int pitch = accessor.GetWidth() * bytesPerPixel; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1085 Uint8* target = NULL; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1086 pixels->createUint8Array(accessor.GetHeight() * pitch, target); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1087 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1088 for (unsigned int y = 0; y < accessor.GetHeight(); y++) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1089 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1090 switch (accessor.GetFormat()) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1091 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1092 case PixelFormat_RGB24: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1093 case PixelFormat_Grayscale8: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1094 case PixelFormat_Grayscale16: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1095 case PixelFormat_SignedGrayscale16: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1096 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1097 memcpy(target, reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)), pitch); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1098 target += pitch; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1099 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1100 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1101 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1102 case PixelFormat_RGBA32: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1103 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1104 // The alpha channel is not supported by the DICOM standard |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1105 const Uint8* source = reinterpret_cast<const Uint8*>(accessor.GetConstRow(y)); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1106 for (unsigned int x = 0; x < accessor.GetWidth(); x++, target += 3, source += 4) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1107 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1108 target[0] = source[0]; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1109 target[1] = source[1]; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1110 target[2] = source[2]; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1111 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1112 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1113 break; |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1114 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1115 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1116 default: |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1117 throw OrthancException(ErrorCode_NotImplemented); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1118 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1119 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1120 |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1121 if (!pimpl_->file_->getDataset()->insert(pixels.release(), false, false).good()) |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1122 { |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1123 throw OrthancException(ErrorCode_InternalError); |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1124 } |
|
ecedd89055db
generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
799
diff
changeset
|
1125 } |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1126 |
|
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
853
diff
changeset
|
1127 |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1128 Encoding ParsedDicomFile::GetEncoding() const |
|
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1129 { |
|
1928
84c7eaeb5244
Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
1130 return FromDcmtkBridge::DetectEncoding(*pimpl_->file_->getDataset(), |
|
84c7eaeb5244
Configuration::GetDefaultEncoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1924
diff
changeset
|
1131 Configuration::GetDefaultEncoding()); |
|
956
2fd5a163776d
primitives for proper encoding handling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
1132 } |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1133 |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1134 |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1135 void ParsedDicomFile::SetEncoding(Encoding encoding) |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1136 { |
|
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1137 if (encoding == Encoding_Windows1251) |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1138 { |
|
1558
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1139 // This Cyrillic codepage is not officially supported by the |
|
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1140 // DICOM standard. Do not set the SpecificCharacterSet tag. |
|
124de28b32ed
fix encodings of newly created dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1141 return; |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1142 } |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1143 |
|
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
1144 std::string s = GetDicomSpecificCharacterSet(encoding); |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1145 ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, s); |
|
1090
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1146 } |
|
e494ceb8d763
support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1018
diff
changeset
|
1147 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1148 void ParsedDicomFile::DatasetToJson(Json::Value& target, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1149 DicomToJsonFormat format, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1150 DicomToJsonFlags flags, |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1151 unsigned int maxStringLength) |
|
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1152 { |
| 2126 | 1153 FromDcmtkBridge::ExtractDicomAsJson(target, *pimpl_->file_->getDataset(), |
| 2131 | 1154 format, flags, maxStringLength, Configuration::GetDefaultEncoding()); |
|
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1113
diff
changeset
|
1155 } |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1156 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1157 |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1158 void ParsedDicomFile::DatasetToJson(Json::Value& target) |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1159 { |
| 2131 | 1160 Configuration::ExtractDicomAsJson(target, *pimpl_->file_->getDataset()); |
|
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1161 } |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1162 |
|
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2126
diff
changeset
|
1163 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1164 void ParsedDicomFile::HeaderToJson(Json::Value& target, |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1165 DicomToJsonFormat format) |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1166 { |
| 2126 | 1167 FromDcmtkBridge::ExtractHeaderAsJson(target, *pimpl_->file_->getMetaInfo(), format, DicomToJsonFlags_None, 0); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1168 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1169 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1827
diff
changeset
|
1170 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1171 bool ParsedDicomFile::HasTag(const DicomTag& tag) const |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1172 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1173 DcmTag key(tag.GetGroup(), tag.GetElement()); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1174 return pimpl_->file_->getDataset()->tagExists(key); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1175 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1176 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1177 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1178 void ParsedDicomFile::EmbedPdf(const std::string& pdf) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1179 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1180 if (pdf.size() < 5 || // (*) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1181 strncmp("%PDF-", pdf.c_str(), 5) != 0) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1182 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1183 LOG(ERROR) << "Not a PDF file"; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1184 throw OrthancException(ErrorCode_BadFileFormat); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1185 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1186 |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1187 InvalidateCache(); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1188 |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1189 ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_EncapsulatedPDFStorage); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1190 ReplacePlainString(FromDcmtkBridge::Convert(DCM_Modality), "OT"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1191 ReplacePlainString(FromDcmtkBridge::Convert(DCM_ConversionType), "WSD"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1192 ReplacePlainString(FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument), "application/pdf"); |
|
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1981
diff
changeset
|
1193 //ReplacePlainString(FromDcmtkBridge::Convert(DCM_SeriesNumber), "1"); |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1194 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1195 std::auto_ptr<DcmPolymorphOBOW> element(new DcmPolymorphOBOW(DCM_EncapsulatedDocument)); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1196 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1197 size_t s = pdf.size(); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1198 if (s & 1) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1199 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1200 // The size of the buffer must be even |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1201 s += 1; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1202 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1203 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1204 Uint8* bytes = NULL; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1205 OFCondition result = element->createUint8Array(s, bytes); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1206 if (!result.good() || bytes == NULL) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1207 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1208 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1209 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1210 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1211 // Blank pad byte (no access violation, as "pdf.size() >= 5" because of (*) ) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1212 bytes[s - 1] = 0; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1213 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1214 memcpy(bytes, pdf.c_str(), pdf.size()); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1215 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1216 DcmPolymorphOBOW* obj = element.release(); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1217 result = pimpl_->file_->getDataset()->insert(obj); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1218 |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1219 if (!result.good()) |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1220 { |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1221 delete obj; |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1222 throw OrthancException(ErrorCode_NotEnoughMemory); |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1223 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1224 } |
|
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1523
diff
changeset
|
1225 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1226 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1227 bool ParsedDicomFile::ExtractPdf(std::string& pdf) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1228 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1229 std::string sop, mime; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1230 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1231 if (!GetTagValue(sop, DICOM_TAG_SOP_CLASS_UID) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1232 !GetTagValue(mime, FromDcmtkBridge::Convert(DCM_MIMETypeOfEncapsulatedDocument)) || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1233 sop != UID_EncapsulatedPDFStorage || |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1234 mime != "application/pdf") |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1235 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1236 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1237 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1238 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1239 if (!GetTagValue(pdf, DICOM_TAG_ENCAPSULATED_DOCUMENT)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1240 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1241 return false; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1242 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1243 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1244 // Strip the possible pad byte at the end of file, because the |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1245 // encapsulated documents must always have an even length. The PDF |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1246 // format expects files to end with %%EOF followed by CR/LF. If |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1247 // the last character of the file is not a CR or LF, we assume it |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1248 // is a pad byte and remove it. |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1249 if (pdf.size() > 0) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1250 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1251 char last = *pdf.rbegin(); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1252 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1253 if (last != 10 && last != 13) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1254 { |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1255 pdf.resize(pdf.size() - 1); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1256 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1257 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1258 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1259 return true; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1260 } |
|
1662
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1261 |
|
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1262 |
|
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1655
diff
changeset
|
1263 void ParsedDicomFile::Convert(DicomMap& tags) |
|
09be34b2f30e
ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1264 { |
| 2131 | 1265 Configuration::ExtractDicomSummary(tags, *pimpl_->file_->getDataset()); |
|
1662
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1266 } |
|
1818
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1267 |
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1268 |
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1269 ParsedDicomFile* ParsedDicomFile::CreateFromJson(const Json::Value& json, |
|
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1270 DicomFromJsonFlags flags) |
|
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1271 { |
| 2028 | 1272 const bool generateIdentifiers = (flags & DicomFromJsonFlags_GenerateIdentifiers) ? true : false; |
| 1273 const bool decodeDataUriScheme = (flags & DicomFromJsonFlags_DecodeDataUriScheme) ? true : false; | |
|
1818
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1274 |
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1275 std::auto_ptr<ParsedDicomFile> result(new ParsedDicomFile(generateIdentifiers)); |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
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1276 result->SetEncoding(FromDcmtkBridge::ExtractEncoding(json, Configuration::GetDefaultEncoding())); |
|
1818
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1277 |
|
1934
72a2fd7fed8b
FromDcmtkBridge::FromJson
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|
1278 const Json::Value::Members tags = json.getMemberNames(); |
|
72a2fd7fed8b
FromDcmtkBridge::FromJson
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1279 |
|
1818
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1280 for (size_t i = 0; i < tags.size(); i++) |
|
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1281 { |
|
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1282 DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]); |
|
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1283 const Json::Value& value = json[tags[i]]; |
|
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1284 |
|
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1285 if (tag == DICOM_TAG_PIXEL_DATA || |
|
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1286 tag == DICOM_TAG_ENCAPSULATED_DOCUMENT) |
|
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1287 { |
|
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1288 if (value.type() != Json::stringValue) |
|
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1289 { |
|
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1290 throw OrthancException(ErrorCode_BadRequest); |
|
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1291 } |
|
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1292 else |
|
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|
1293 { |
|
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1294 result->EmbedContent(value.asString()); |
|
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1295 } |
|
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1296 } |
|
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1297 else if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
|
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1298 { |
|
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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|
1299 result->Replace(tag, value, decodeDataUriScheme, DicomReplaceMode_InsertIfAbsent); |
|
1818
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1300 } |
|
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1301 } |
|
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|
1302 |
|
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1303 return result.release(); |
|
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1304 } |
|
1924
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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1305 |
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1306 |
|
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|
1307 void ParsedDicomFile::GetRawFrame(std::string& target, |
|
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|
1308 std::string& mime, |
|
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|
1309 unsigned int frameId) |
|
6c73df12ca51
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1310 { |
|
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1311 if (pimpl_->frameIndex_.get() == NULL) |
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|
1312 { |
| 1956 | 1313 pimpl_->frameIndex_.reset(new DicomFrameIndex(*pimpl_->file_)); |
|
1924
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1314 } |
|
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1315 |
|
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|
1316 pimpl_->frameIndex_->GetRawFrame(target, frameId); |
|
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1317 |
|
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|
1318 E_TransferSyntax transferSyntax = pimpl_->file_->getDataset()->getOriginalXfer(); |
|
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|
1319 switch (transferSyntax) |
|
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|
1320 { |
|
1946
40b7a0176305
fix compilation against DCMTK 3.6.1
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1945
diff
changeset
|
1321 case EXS_JPEGProcess1: |
|
1924
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|
1322 mime = "image/jpeg"; |
|
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|
1323 break; |
|
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1324 |
|
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|
1325 case EXS_JPEG2000LosslessOnly: |
|
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|
1326 case EXS_JPEG2000: |
|
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|
1327 mime = "image/jp2"; |
| 2016 | 1328 break; |
|
1924
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diff
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|
1329 |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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diff
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|
1330 default: |
|
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|
1331 mime = "application/octet-stream"; |
|
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diff
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|
1332 break; |
|
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|
1333 } |
|
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1334 } |
|
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|
1335 |
|
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|
1336 |
|
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|
1337 void ParsedDicomFile::InvalidateCache() |
|
6c73df12ca51
New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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|
1338 { |
|
6c73df12ca51
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changeset
|
1339 pimpl_->frameIndex_.reset(NULL); |
|
6c73df12ca51
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changeset
|
1340 } |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
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parents:
1946
diff
changeset
|
1341 |
|
533ff46e944b
return a single raw frame from DICOM videos
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parents:
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diff
changeset
|
1342 |
|
533ff46e944b
return a single raw frame from DICOM videos
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1946
diff
changeset
|
1343 unsigned int ParsedDicomFile::GetFramesCount() const |
|
533ff46e944b
return a single raw frame from DICOM videos
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parents:
1946
diff
changeset
|
1344 { |
| 1956 | 1345 return DicomFrameIndex::GetFramesCount(*pimpl_->file_); |
|
1950
533ff46e944b
return a single raw frame from DICOM videos
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diff
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|
1346 } |
| 790 | 1347 } |