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annotate OrthancFramework/Sources/DicomFormat/DicomMap.h @ 5440:99fa307438e1 debug-telemis

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DicomStoreUserConnection: improved logs
author Alain Mazy <am@osimis.io>
date Wed, 22 Nov 2023 21:18:16 +0100
parents 138e9d0c08c1
children 48b8dae6dc77
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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24 #pragma once
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26 #include "DicomTag.h"
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27 #include "DicomValue.h"
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28 #include "../Enumerations.h"
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29
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30 #include <set>
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31 #include <map>
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32 #include <json/value.h>
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33
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34 namespace Orthanc
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35 {
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36 class ORTHANC_PUBLIC DicomMap : public boost::noncopyable
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37 {
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38 public:
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39 typedef std::map<DicomTag, DicomValue*> Content;
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40
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41 private:
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42 class MainDicomTagsConfiguration;
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43 friend class DicomArray;
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44 friend class FromDcmtkBridge;
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45 friend class ParsedDicomFile;
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46
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47 Content content_;
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49 // Warning: This takes the ownership of "value"
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50 void SetValueInternal(uint16_t group,
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51 uint16_t element,
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52 DicomValue* value);
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54 public:
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55 ~DicomMap();
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56
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57 static void ResetDefaultMainDicomTags();
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58
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59 size_t GetSize() const;
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61 DicomMap* Clone() const;
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62
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63 void Assign(const DicomMap& other);
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65 void Clear();
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66
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67 void SetNullValue(uint16_t group,
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68 uint16_t element);
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69
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70 void SetNullValue(const DicomTag& tag);
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72 void SetValue(uint16_t group,
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73 uint16_t element,
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74 const DicomValue& value);
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76 void SetValue(const DicomTag& tag,
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77 const DicomValue& value);
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79 void SetValue(const DicomTag& tag,
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80 const std::string& str,
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81 bool isBinary);
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83 void SetValue(uint16_t group,
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84 uint16_t element,
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85 const std::string& str,
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86 bool isBinary);
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88 void SetSequenceValue(const DicomTag& tag,
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89 const Json::Value& value);
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91 bool HasTag(uint16_t group, uint16_t element) const;
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93 bool HasTag(const DicomTag& tag) const;
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95 const DicomValue& GetValue(uint16_t group, uint16_t element) const;
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97 const DicomValue& GetValue(const DicomTag& tag) const;
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98
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99 // DO NOT delete the returned value!
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100 const DicomValue* TestAndGetValue(uint16_t group, uint16_t element) const;
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101
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102 // DO NOT delete the returned value!
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103 const DicomValue* TestAndGetValue(const DicomTag& tag) const;
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104
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105 void Remove(const DicomTag& tag);
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106
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107 void RemoveTags(const std::set<DicomTag>& tags);
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108
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109 void ExtractPatientInformation(DicomMap& result) const;
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110
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111 void ExtractStudyInformation(DicomMap& result) const;
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112
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113 void ExtractSeriesInformation(DicomMap& result) const;
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114
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115 void ExtractInstanceInformation(DicomMap& result) const;
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116
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117 void ExtractResourceInformation(DicomMap& result, ResourceType level) const;
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118
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119 void ExtractTags(DicomMap& result, const std::set<DicomTag>& tags) const;
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120
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121 void ExtractSequences(DicomMap& result) const;
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122
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123 static void SetupFindPatientTemplate(DicomMap& result);
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124
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125 static void SetupFindStudyTemplate(DicomMap& result);
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126
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127 static void SetupFindSeriesTemplate(DicomMap& result);
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128
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129 static void SetupFindInstanceTemplate(DicomMap& result);
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130
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131 void CopyTagIfExists(const DicomMap& source,
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132 const DicomTag& tag);
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133
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134 static bool IsMainDicomTag(const DicomTag& tag, ResourceType level);
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135
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136 static bool IsMainDicomTag(const DicomTag& tag);
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137
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138 static bool IsComputedTag(const DicomTag& tag, ResourceType level);
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139
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140 static bool IsComputedTag(const DicomTag& tag);
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141
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142 static bool HasOnlyComputedTags(const std::set<DicomTag>& tags);
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143
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144 static bool HasComputedTags(const std::set<DicomTag>& tags, ResourceType level);
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145
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146 static bool HasComputedTags(const std::set<DicomTag>& tags);
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147
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148 static void GetMainDicomTags(std::set<DicomTag>& target,
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149 ResourceType level);
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150
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151 // returns a string uniquely identifying the list of main dicom tags for a level
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152 static std::string GetMainDicomTagsSignature(ResourceType level);
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153
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154 static std::string GetDefaultMainDicomTagsSignature(ResourceType level);
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155
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156 static void GetAllMainDicomTags(std::set<DicomTag>& target);
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157
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158 // adds a main dicom tag to the definition of main dicom tags for each level.
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159 // this should be done once at startup before you use MainDicomTags methods
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160 static void AddMainDicomTag(const DicomTag& tag, ResourceType level);
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161
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162 void GetTags(std::set<DicomTag>& tags) const;
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163
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164 static bool IsDicomFile(const void* dicom,
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165 size_t size);
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166
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167 static bool ParseDicomMetaInformation(DicomMap& result,
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168 const void* dicom,
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169 size_t size);
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170
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171 void LogMissingTagsForStore() const;
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172
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173 static void LogMissingTagsForStore(const std::string& patientId,
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174 const std::string& studyInstanceUid,
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175 const std::string& seriesInstanceUid,
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176 const std::string& sopInstanceUid);
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177
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178 bool LookupStringValue(std::string& result,
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179 const DicomTag& tag,
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180 bool allowBinary) const;
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181
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182 bool ParseInteger32(int32_t& result,
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183 const DicomTag& tag) const;
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184
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185 bool ParseInteger64(int64_t& result,
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186 const DicomTag& tag) const;
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187
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188 bool ParseUnsignedInteger32(uint32_t& result,
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189 const DicomTag& tag) const;
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190
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191 bool ParseUnsignedInteger64(uint64_t& result,
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192 const DicomTag& tag) const;
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193
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194 bool ParseFloat(float& result,
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195 const DicomTag& tag) const;
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196
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197 bool ParseFirstFloat(float& result,
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198 const DicomTag& tag) const;
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199
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200 bool ParseDouble(double& result,
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201 const DicomTag& tag) const;
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202
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203 void FromDicomAsJson(const Json::Value& dicomAsJson,
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204 bool append = false,
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205 bool parseSequences = false);
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206
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207 void Merge(const DicomMap& other);
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208
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209 void MergeMainDicomTags(const DicomMap& other,
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210 ResourceType level);
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211
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212 void ExtractMainDicomTags(const DicomMap& other);
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213
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214 bool HasOnlyMainDicomTags() const;
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215
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216 void Serialize(Json::Value& target) const;
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217
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218 void Unserialize(const Json::Value& source);
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219
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220 void FromDicomWeb(const Json::Value& source);
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221
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222 std::string GetStringValue(const DicomTag& tag,
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223 const std::string& defaultValue,
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224 bool allowBinary) const;
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225
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226 void RemoveBinaryTags();
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227
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228 void RemoveSequences();
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229
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230 void DumpMainDicomTags(Json::Value& target,
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231 ResourceType level) const;
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232
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233 ValueRepresentation GuessPixelDataValueRepresentation(DicomTransferSyntax transferSyntax) const;
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234
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235 void Print(FILE* fp) const; // For debugging only
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236 };
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237 }