Mercurial > hg > orthanc
annotate TODO @ 5084:9770d537880d attach-custom-data
added support for revision in SQLite + avoid upgrading DB version
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Thu, 15 Sep 2022 09:02:07 +0200 |
| parents | 75e949689c08 |
| children | 79f98ee4f04b |
| rev | line source |
|---|---|
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allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
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1 TODO_CUSTOM_DATA branch |
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2 - add REVISIONS in AttachedFiles + Metadata in SQLite since we change the DB schema |
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3 - add revisions and customData in all Database plugins |
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4 - check if we can play with GlobalProperty_DatabasePatchLevel instead of upgrading the DB version ! |
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5 - upgrade DB automatically such that it does not need a specific launch with --update , add --downgrade + --no-auto-upgrade command lines |
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6 - refuse to instantiate a PluginStorage3 if a DBv4 is not instantiated ! |
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7 - handle all TODO_CUSTOM_DATA |
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8 - check /attachments/... routes for path returned |
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allow plugins to store a customData in the Attachments table to e.g. store custom paths without requiring an external DB
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9 - AdvancedStoragePlugin |
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10 - show warning if a tag is missing when generating the path from tags (+ option to disable this warning) |
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11 - generate path from tags from resource (CreateAttachment) |
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12 - add an instanceId or parentSeriesId arg in CreateInstance ? |
| 5081 | 13 - implement a 'legacy' root path to group all files with missing tags or path too long |
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14 - document that, once you have used the AdvancedStoragePlugin and stored DICOM files, you can not downgrade Orthanc to a previous Orthanc |
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15 without loosing access to the DICOM files |
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16 - write integration test for advanced-storage: |
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17 - launch 1.11.2 |
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18 - upload 1 file |
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19 - launch 1.12.0 with advanced-storage plugin with a non default namingScheme |
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20 - upload 1 file |
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21 - access + delete initial file |
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22 |
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23 - write integration test for transitions from one DB to the other (for each DB plugin): |
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24 - launch 1.11.2, |
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25 - upload 2 files, |
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26 - launch 1.12.0, |
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27 - access + delete one file, |
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28 - upload one file, |
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29 - launch 1.11.2 again, |
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30 - access + delete last 2 files |
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31 |
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32 |
| 2163 | 33 ======================= |
| 34 === Orthanc Roadmap === | |
| 35 ======================= | |
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36 |
| 4707 | 37 For higher-level ideas in the roadmap, please first read the |
| 38 "Contributing to Orthanc" section of the Orthanc Book: | |
| 39 https://book.orthanc-server.com/contributing.html | |
| 40 | |
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41 |
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42 Some features are being funded by an OpenCollective one-time donations. |
| 4927 | 43 selected features are marked with priorities ((1) - higher, (2) - medium, (3) - nice to have) |
| 44 | |
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45 ======= |
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46 General |
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47 ======= |
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48 |
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49 * Configure an user-defined site UID root if generating DICOM UIDs |
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50 ("FromDcmtkBridge::GenerateUuid()") |
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51 * Improve handling of errors in the command queue: |
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52 https://groups.google.com/d/msg/orthanc-users/--njEbqcDDI/rBu8XL-Mm-cJ |
| 2178 | 53 * Support partial file retrieval in Orthanc::HttpClient |
| 54 * Support retry counter in Orthanc::HttpClient | |
| 4662 | 55 * Option to enable DNS lookups in DICOM: |
| 56 https://hg.orthanc-server.com/orthanc/file/Orthanc-1.9.3/OrthancFramework/Sources/OrthancFramework.cpp#l88 | |
| 4643 | 57 * Toolbox::ComputeMD5() fails on files larger than 4GB |
| 4841 | 58 * Add an option to run Orthanc in read-only mode both for DICOM and for Rest API. |
| 4885 | 59 * Logging: add some information like Thread-Id to contextualize the logs |
| 4927 | 60 * (1) Accept extra DICOM tags dictionaries in the DCMTK format '.dic' (easier to use than declare |
| 4885 | 61 them in the Orthanc configuration file). Even the standard dictionaries could be |
| 62 overriden by these custom dictionaries. | |
| 4931 | 63 * Provide more flexibility wrt Dicom TLS ciphers and TLS version: |
| 4926 | 64 https://groups.google.com/g/orthanc-users/c/X4IhmXCSr7I/m/EirawAFcBwAJ |
| 5010 | 65 Can maybe be achieved by adding a configuration to select the TLS Security Profile: |
| 66 https://github.com/DCMTK/dcmtk/blob/master/dcmtls/include/dcmtk/dcmtls/tlsciphr.h#L83 | |
| 67 (e.g: TSP_Profile_BCP195_ND instead of TSP_Profile_BCP195) | |
| 5002 | 68 * Provide a configuration option related to MaximumStorageSize: instead of |
| 69 recycling older patients, simply block new ingests (from DICOM/DICOMweb/API) | |
| 70 by returning out-of-resource status (HTTP or DIMSE) | |
| 5013 | 71 * Add configurations to enable/disable warnings: |
| 72 - Modifying an instance while keeping its original SOPInstanceUID: This should be avoided! | |
| 5034 | 73 - Modifying a study while keeping its original StudyInstanceUID: This should be avoided! |
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74 |
| 4643 | 75 |
| 76 ============================ | |
| 77 Documentation (Orthanc Book) | |
| 78 ============================ | |
| 79 | |
| 4928 | 80 * Write a getting started guide (step by step) for each platform to replace |
| 81 https://book.orthanc-server.com/users/cookbook.html : | |
| 82 - Ubuntu/Debian | |
| 83 - Windows | |
| 84 - OSX | |
| 85 - Docker on Linux | |
| 86 Each step by step guide should contain: | |
| 87 - get binaries | |
| 88 - launch | |
| 89 - open explorer | |
| 90 - edit configuration file | |
| 91 - restart and observe changes | |
| 92 | |
| 4645 | 93 * Explain how log rotation can be achieved (no built-in support in Orthanc) |
| 94 * Explain how to interface with Mirth/NextGen Connect | |
| 95 https://en.wikipedia.org/wiki/NextGen_Connect | |
| 96 * How to reproduce issues by replacing Orthanc with storescp or wlmscpfs | |
| 97 * How to capture TCP traffic of DICOM protocol using tcpdump and Wireshark | |
| 98 * Add more configurations of viewers (Weasis, Slicer...): | |
| 99 https://book.orthanc-server.com/integrations.html | |
| 4648 | 100 * Discuss HL7 in a dedicated page: |
| 101 https://groups.google.com/d/msg/orthanc-users/4dt4992O0lQ/opTjTFU2BgAJ | |
| 4728 | 102 https://groups.google.com/g/orthanc-users/c/Spjtcj9vSPo/m/ktUArWxUDQAJ |
| 4812 | 103 |
| 104 | |
| 105 ================ | |
| 106 Orthanc Explorer | |
| 107 ================ | |
| 108 | |
| 109 * Option to tune the number of results for a local lookup: | |
| 110 https://groups.google.com/g/orthanc-users/c/LF39musq02Y/ | |
| 111 | |
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112 |
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113 ======== |
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114 REST API |
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115 ======== |
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116 |
| 5014 | 117 ---------- |
| 118 Short-term | |
| 119 ---------- | |
| 120 | |
| 121 * Add "KeepSource" to "/modify" and "/anonymize" routes | |
| 122 https://groups.google.com/g/orthanc-users/c/svS3YOqA2Mo/m/wcoE18IcAAAJ | |
| 123 | |
| 3967 | 124 -------- |
| 125 Mid-term | |
| 126 -------- | |
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127 |
| 4927 | 128 * (1) Archive jobs: Resume downloads using "range requests": |
| 4478 | 129 https://developer.mozilla.org/en-US/docs/Web/HTTP/Range_requests |
| 4927 | 130 * (3) Create DICOM from DICOMweb JSON ("application/dicom+json") |
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131 with "/tools/create-dicom" |
| 4927 | 132 * (2) Create multi-frame images with /tools/create-dicom (by adding a |
| 4644 | 133 "MultiFrame" flag to avoid creating a series), or modify PixelData |
| 134 of a multi-frame image: | |
| 135 https://groups.google.com/g/orthanc-users/c/y3-xa_GcdLM/m/m0Kr5G5UPAAJ | |
| 4927 | 136 * (1) Specify the transfer syntax in /tools/create-dicom |
| 5055 | 137 https://groups.google.com/g/orthanc-users/c/o15Dekecgds/m/xmPE2y3bAwAJ |
| 4927 | 138 * (1) In the /studies/{id}/anonymize route, add an option to remove |
| 4478 | 139 secondary captures. They usually contains Patient info in the |
| 140 image. The SOPClassUID might be used to identify such secondary | |
| 141 captures. | |
| 142 * Support "/preview" and "/matlab" for LUT color images | |
| 4803 | 143 * Try to transcode files if a simple decoding fails: |
| 144 https://groups.google.com/g/orthanc-users/c/b8168-NkAhA/m/Df3j-CO9CgAJ | |
| 4927 | 145 * (2) Ranges of DICOM tags for "Keep" and "Remove" in ".../modify" and ".../anonymize": |
| 4644 | 146 https://groups.google.com/g/orthanc-users/c/6dETktKo9v8/m/b0LUvSfwAgAJ |
| 5006 | 147 * return error code/reason in HTTP response if resubmit/cancel/pause fails ... |
| 5008 | 148 * filter /changes by type e.g: /changes?filter=StablePatient |
| 149 https://groups.google.com/g/orthanc-users/c/r20kDb0axms/m/2tzbQzYJAgAJ | |
| 150 * save more details in jobs e.g: the resources being sent/exported ... | |
| 151 https://groups.google.com/g/orthanc-users/c/rDDusFG5Lco/m/TzTUjWXLAQAJ | |
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152 |
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153 --------- |
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154 Long-term |
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155 --------- |
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156 |
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157 * Stick to the JSONapi or JAREST guidelines for a "v2" of the API: |
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158 https://groups.google.com/forum/#!msg/orthanc-users/Bag-SwEE9ZI/-w7QXI6p7-oJ |
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159 http://www.admiraalit.nl/jarest/ |
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160 |
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161 |
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162 ===== |
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163 DICOM |
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164 ===== |
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165 |
| 3383 | 166 -------- |
| 167 Mid-term | |
| 168 -------- | |
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169 |
| 4452 | 170 * Support C-GET SCU (note that C-GET SCP was introduced in Orthanc 1.7.0) |
| 3335 | 171 * Support "Retrieve AE Title" (0008,0054) in C-FIND: |
| 4144 | 172 - On SCP side: done by https://hg.orthanc-server.com/orthanc/rev/1ec3e1e18f50 |
| 3472 | 173 - On SCU side: |
| 174 https://groups.google.com/d/msg/orthanc-users/wPl0g5mqZco/5X1Z8tEzBgAJ | |
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175 * Check Big Endian transfer syntax in ParsedDicomFile::EmbedImage and |
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176 DicomImageDecoder |
| 3384 | 177 * Strict hierarchical C-FIND: |
| 178 https://groups.google.com/d/msg/orthanc-users/VBHpeGVSNKM/tkaVvjWFBwAJ | |
| 4986 | 179 * report DIMSE error codes in Rest API and job status for /store /query /move /retrieve |
| 180 * Log outgoing C-Find queries | |
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181 |
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182 --------- |
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183 Long-term |
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184 --------- |
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185 |
| 4885 | 186 * Support extended association (e.g. for C-Find relational queries): |
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187 https://groups.google.com/d/msg/orthanc-users/xD4d3mpc6ms/srF7E2goAAAJ |
| 3465 | 188 * Support C-MOVE-CANCEL: |
| 189 https://groups.google.com/d/msg/orthanc-users/KnduYBFd06A/o86cl5SeCAAJ | |
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190 |
| 3967 | 191 -------------------- |
| 192 Internationalization | |
| 193 -------------------- | |
| 3218 | 194 |
| 195 * Support multiple specific character sets (cf. "SCSH32" in orthanc-tests) | |
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196 - http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#sect_C.12.1.1.2 |
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197 - Japanese test: http://dicom.nema.org/MEDICAL/dicom/2017c/output/chtml/part05/sect_H.3.2.html |
| 3218 | 198 * Support Supplementary Kanji set (ISO 2022 IR 159) |
| 3261 | 199 * Create DICOM files with multibyte encodings (Korean, JapaneseKanji, SimplifiedChinese) |
| 3218 | 200 |
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201 |
| 4467 | 202 =========== |
| 203 Performance | |
| 204 =========== | |
| 205 | |
| 4927 | 206 * (3) ServerContext::DicomCacheLocker => give access to the raw buffer, |
| 4467 | 207 useful in ServerContext::DecodeDicomInstance() |
| 4927 | 208 * (2) DicomMap: create a cache to the main DICOM tags index |
| 209 * (3) Check out rapidjson: https://github.com/miloyip/nativejson-benchmark | |
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210 * For C-Find results: we could store the computed tags |
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211 in metadata on some events like NewSeries + DeletedSeries (same for other computer tags). |
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212 OtherTags that could be saved in Metadata as well: |
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213 - ModalitiesInStudy |
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214 - all computed counters at series/study/patient level |
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215 - RequestAttributesSequence (sequence that must be included in all DicomWeb QIDO-RS for series) |
| 4467 | 216 |
| 4986 | 217 * Long-shot & not sure it is even feasible at all: try to reduce memory usage by implementing streaming |
| 218 when receiving DICOM instances from the Rest API or from DICOM and store files directly to disk as they | |
| 219 are received. Note that this would likely require rewriting large parts of Orthanc. Note sure that | |
| 220 would be compatible with Transcoding. | |
| 221 Use case: receiving 10 1GB instances in parallel can consume up to 20 GB | |
| 222 Alternative option 1: write an "external application/plugin" that would take care of these receptions, write the | |
| 223 file at the right place and send a signal to Orthanc to "adopt" the file. | |
| 224 Alternative option 2: declare a memory resource (X GB) that is available for reception. Every time | |
| 225 Orthanc starts receiving a file, it reserves the memory or twice the memory (through a Semaphore) | |
| 226 if no memory is available, it waits and possibly timeouts returning a 503 or DIMSE A700 (out of resources). | |
| 227 This would at least protect from "out of memory" crashes. | |
| 228 | |
| 229 | |
| 4624 | 230 ======== |
| 231 Database | |
| 232 ======== | |
| 233 | |
| 234 * Integration test searching for "\" and "%" in PatientName, PatientID... | |
| 235 | |
| 236 | |
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237 ======= |
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238 Plugins |
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239 ======= |
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240 |
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241 --- |
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242 SDK |
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243 --- |
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244 |
| 4212 | 245 * Implement PluginsJob::GetOutput() to allow user-defined jobs to provide output: |
| 246 https://groups.google.com/g/orthanc-users/c/GZ7u0bTTVoo/m/Z7iTNTi2BgAJ | |
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247 * Add plugins for normalized operations (notably so as to support |
| 4645 | 248 Print SCU/SCP, cf. "dcmprscp"): |
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249 https://web.archive.org/web/20170923150432/https://www.medicalconnections.co.uk/kb/DICOM_Print_Service |
| 3153 | 250 * Provide access to the Orthanc::DicomUserConnection class in plugins: |
| 251 https://groups.google.com/d/msg/orthanc-users/ycDA1xPuTRY/nsT2_GOtEgAJ | |
| 3390 | 252 * Provide a C++ callback similar to "ReceivedInstanceFilter()" in Lua |
| 253 https://book.orthanc-server.com/users/lua.html#filtering-incoming-dicom-instances | |
| 254 https://groups.google.com/d/msg/orthanc-users/BtvLTE5Ni8A/vIMhmMgfBAAJ | |
| 4645 | 255 * In "OrthancPluginLog[Error|Warning|Info]()", prefix the log line with |
| 256 the name of the plugin, as retrieved by "OrthancPluginGetName()" | |
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257 * Update the SDK to handle buffer sizes > 4GB (all sizes are currently coded in uint32_t) |
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258 |
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259 ---------------- |
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260 Ideas of plugins |
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261 ---------------- |
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262 |
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263 * DICOM-RT primitives (RT-STRUCT, RT-PLAN, RT-DOSE) |
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264 * Converter to/from NIfTI |
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265 * Decode JPEG2k with grok: https://github.com/GrokImageCompression/grok |
| 2251 | 266 * Generate dynamic HTTP content using Lua: |
| 2199 | 267 https://groups.google.com/d/msg/orthanc-users/KompazkxRSs/5Rh03mzgDAAJ |
| 2251 | 268 * More generally, expose more callbacks of the plugin SDK in Lua: |
| 269 https://groups.google.com/d/msg/orthanc-users/_FbiRHuXPGM/J-OAv7zaCAAJ | |
| 3300 | 270 * Configuration interface plugin |
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271 |
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272 |
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273 === |
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274 Lua |
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275 === |
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276 |
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277 * Configure HTTP headers from Lua (in RestApiPost(), RestApiPut() |
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278 and RestApiDelete(). |
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279 https://groups.google.com/forum/#!msg/orthanc-users/WNnW187OILM/6XX_bm96BwAJ |
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280 |
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281 |
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282 ================ |
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283 Code refactoring |
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284 ================ |
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285 |
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286 * Use Semaphore::Locker everywhere (instead of explicit |
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287 Release() and Acquire()) |
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288 * Avoid direct calls to FromDcmtkBridge (make most of its |
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289 methods private), go through ParsedDicomFile wherever possible |
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290 |
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291 |
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292 ================= |
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293 Platform-specific |
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294 ================= |
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295 |
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296 --------- |
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297 Packaging |
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298 --------- |
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299 |
| 4467 | 300 * RHEL through EPEL (as of 2021, CentOS seems to be over): |
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301 http://fedoraproject.org/wiki/EPEL_Package_Maintainers |
| 4643 | 302 * Fedora: Are DICOM dictionaries correctly located? |
| 303 https://groups.google.com/g/orthanc-users/c/YB_LTBuUQNA/m/3H1xsrZJDgAJ | |
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304 |
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305 ------------------------ |
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306 Big-endian architectures |
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307 ------------------------ |
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308 |
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309 * Check the generated 16bpp PNG images |
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310 |
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311 ----------------- |
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312 Microsoft Windows |
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313 ----------------- |
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314 |
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315 * Add compatibility with non-ASCII paths (Orthanc expresses its paths |
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316 as UTF-8 strings, but Windows expects them to be translated to the |
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317 system locale) |
| 5053 | 318 * Fix error message when stopping the service: |
| 319 https://groups.google.com/g/orthanc-users/c/NyrwUJ9N6Ec/m/sTZIcWvaAgAJ | |
| 320 | |
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321 |
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322 ==== |
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323 Misc |
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324 ==== |
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325 |
| 4643 | 326 ----------------- |
| 327 Maintenance tools | |
| 328 ----------------- | |
| 329 | |
| 330 * Standalone tool to detect corrupted files: | |
| 331 https://groups.google.com/g/orthanc-users/c/KASEJ9Gx3vQ/m/MIJFJdRhAwAJ | |
| 332 * Standalone tool to detect orphan files in OrthancStorage | |
| 333 | |
| 334 ---------------------------------- | |
| 335 Code quality and integration tests | |
| 336 ---------------------------------- | |
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337 |
| 4467 | 338 * Have a look at openQA (cf. GNU Health) |
| 4643 | 339 * Add integration tests for LUT |
| 4926 | 340 * Add more complex testing scenarios like data-migration, change of |
| 341 configuration files, multiple orthanc interacting togethers with various | |
| 342 config. This should probably look like the python toolbox tests ... | |
| 343 | |
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344 |
| 4467 | 345 --------------------- |
| 346 External applications | |
| 347 --------------------- | |
| 348 | |
| 349 * Create REST bindings with Slicer | |
| 350 * Create REST bindings with Horos/OsiriX |