Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2208:90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 09 Dec 2016 14:48:31 +0100 |
parents | c4b3259c8bce |
children | e3fd5bc429a2 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
0 | 34 #include "ServerIndex.h" |
35 | |
6 | 36 #ifndef NOMINMAX |
2 | 37 #define NOMINMAX |
6 | 38 #endif |
39 | |
1198 | 40 #include "ServerIndexChange.h" |
8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
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43 #include "ServerToolbox.h" |
0 | 44 #include "../Core/Toolbox.h" |
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45 #include "../Core/Logging.h" |
0 | 46 #include "../Core/DicomFormat/DicomArray.h" |
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47 |
0 | 48 #include "FromDcmtkBridge.h" |
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49 #include "ServerContext.h" |
1822 | 50 #include "DicomInstanceToStore.h" |
2122 | 51 #include "Search/LookupResource.h" |
0 | 52 |
53 #include <boost/lexical_cast.hpp> | |
54 #include <stdio.h> | |
55 | |
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56 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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57 |
62 | 58 namespace Orthanc |
0 | 59 { |
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60 class ServerIndex::Listener : public IDatabaseListener |
0 | 61 { |
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62 private: |
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63 struct FileToRemove |
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64 { |
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65 private: |
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66 std::string uuid_; |
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67 FileContentType type_; |
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68 |
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69 public: |
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70 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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71 type_(info.GetContentType()) |
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72 { |
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73 } |
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74 |
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75 const std::string& GetUuid() const |
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76 { |
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77 return uuid_; |
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78 } |
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79 |
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80 FileContentType GetContentType() const |
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81 { |
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82 return type_; |
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83 } |
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84 }; |
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85 |
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86 ServerContext& context_; |
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87 bool hasRemainingLevel_; |
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88 ResourceType remainingType_; |
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89 std::string remainingPublicId_; |
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90 std::list<FileToRemove> pendingFilesToRemove_; |
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91 std::list<ServerIndexChange> pendingChanges_; |
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92 uint64_t sizeOfFilesToRemove_; |
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93 bool insideTransaction_; |
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94 |
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95 void Reset() |
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96 { |
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97 sizeOfFilesToRemove_ = 0; |
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98 hasRemainingLevel_ = false; |
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99 pendingFilesToRemove_.clear(); |
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100 pendingChanges_.clear(); |
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101 } |
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102 |
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103 public: |
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104 Listener(ServerContext& context) : context_(context), |
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105 insideTransaction_(false) |
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106 { |
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107 Reset(); |
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108 assert(ResourceType_Patient < ResourceType_Study && |
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109 ResourceType_Study < ResourceType_Series && |
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110 ResourceType_Series < ResourceType_Instance); |
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111 } |
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112 |
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113 void StartTransaction() |
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114 { |
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115 Reset(); |
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116 insideTransaction_ = true; |
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117 } |
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118 |
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119 void EndTransaction() |
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120 { |
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121 insideTransaction_ = false; |
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122 } |
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123 |
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124 uint64_t GetSizeOfFilesToRemove() |
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125 { |
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126 return sizeOfFilesToRemove_; |
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127 } |
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128 |
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129 void CommitFilesToRemove() |
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130 { |
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131 for (std::list<FileToRemove>::const_iterator |
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132 it = pendingFilesToRemove_.begin(); |
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133 it != pendingFilesToRemove_.end(); ++it) |
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134 { |
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135 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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136 } |
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137 } |
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138 |
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139 void CommitChanges() |
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140 { |
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141 for (std::list<ServerIndexChange>::const_iterator |
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142 it = pendingChanges_.begin(); |
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143 it != pendingChanges_.end(); ++it) |
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144 { |
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145 context_.SignalChange(*it); |
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146 } |
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147 } |
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148 |
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149 virtual void SignalRemainingAncestor(ResourceType parentType, |
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150 const std::string& publicId) |
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151 { |
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152 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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153 |
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154 if (hasRemainingLevel_) |
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155 { |
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156 if (parentType < remainingType_) |
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157 { |
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158 remainingType_ = parentType; |
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159 remainingPublicId_ = publicId; |
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160 } |
1158 | 161 } |
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162 else |
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163 { |
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164 hasRemainingLevel_ = true; |
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165 remainingType_ = parentType; |
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166 remainingPublicId_ = publicId; |
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167 } |
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168 } |
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169 |
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170 virtual void SignalFileDeleted(const FileInfo& info) |
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171 { |
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172 assert(Toolbox::IsUuid(info.GetUuid())); |
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173 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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174 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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175 } |
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176 |
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177 virtual void SignalChange(const ServerIndexChange& change) |
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178 { |
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179 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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180 << EnumerationToString(change.GetResourceType()) << ": " |
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181 << EnumerationToString(change.GetChangeType()); |
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182 |
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183 if (insideTransaction_) |
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184 { |
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185 pendingChanges_.push_back(change); |
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186 } |
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187 else |
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188 { |
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189 context_.SignalChange(change); |
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190 } |
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191 } |
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192 |
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193 bool HasRemainingLevel() const |
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194 { |
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195 return hasRemainingLevel_; |
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196 } |
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197 |
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198 ResourceType GetRemainingType() const |
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199 { |
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200 assert(HasRemainingLevel()); |
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201 return remainingType_; |
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202 } |
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203 |
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204 const std::string& GetRemainingPublicId() const |
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205 { |
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206 assert(HasRemainingLevel()); |
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207 return remainingPublicId_; |
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208 } |
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209 }; |
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211 | |
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212 class ServerIndex::Transaction |
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213 { |
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214 private: |
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215 ServerIndex& index_; |
1235 | 216 std::auto_ptr<SQLite::ITransaction> transaction_; |
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217 bool isCommitted_; |
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218 |
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219 public: |
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220 Transaction(ServerIndex& index) : |
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221 index_(index), |
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222 isCommitted_(false) |
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223 { |
1247 | 224 transaction_.reset(index_.db_.StartTransaction()); |
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225 transaction_->Begin(); |
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226 |
1270 | 227 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
228 | |
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229 index_.listener_->StartTransaction(); |
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230 } |
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231 |
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232 ~Transaction() |
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233 { |
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234 index_.listener_->EndTransaction(); |
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235 |
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236 if (!isCommitted_) |
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237 { |
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238 transaction_->Rollback(); |
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239 } |
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240 } |
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241 |
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242 void Commit(uint64_t sizeOfAddedFiles) |
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243 { |
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244 if (!isCommitted_) |
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245 { |
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246 transaction_->Commit(); |
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247 |
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248 // We can remove the files once the SQLite transaction has |
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249 // been successfully committed. Some files might have to be |
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250 // deleted because of recycling. |
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251 index_.listener_->CommitFilesToRemove(); |
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252 |
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253 index_.currentStorageSize_ += sizeOfAddedFiles; |
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254 |
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255 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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256 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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257 |
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258 // Send all the pending changes to the Orthanc plugins |
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259 index_.listener_->CommitChanges(); |
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260 |
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261 isCommitted_ = true; |
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262 } |
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263 } |
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264 }; |
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265 |
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266 |
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267 class ServerIndex::UnstableResourcePayload |
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268 { |
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269 private: |
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270 ResourceType type_; |
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271 std::string publicId_; |
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272 boost::posix_time::ptime time_; |
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273 |
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274 public: |
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275 UnstableResourcePayload() : type_(ResourceType_Instance) |
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276 { |
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277 } |
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278 |
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279 UnstableResourcePayload(Orthanc::ResourceType type, |
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280 const std::string& publicId) : |
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281 type_(type), |
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282 publicId_(publicId) |
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283 { |
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284 time_ = boost::posix_time::second_clock::local_time(); |
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285 } |
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286 |
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287 unsigned int GetAge() const |
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288 { |
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289 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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290 } |
1177
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291 |
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292 ResourceType GetResourceType() const |
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293 { |
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294 return type_; |
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295 } |
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296 |
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297 const std::string& GetPublicId() const |
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298 { |
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299 return publicId_; |
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300 } |
511
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301 }; |
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302 |
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303 |
212 | 304 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 305 const std::string& uuid, |
202 | 306 ResourceType expectedType) |
0 | 307 { |
206
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308 boost::mutex::scoped_lock lock(mutex_); |
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309 |
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310 Transaction t(*this); |
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311 |
202 | 312 int64_t id; |
313 ResourceType type; | |
1294 | 314 if (!db_.LookupResource(id, type, uuid) || |
202 | 315 expectedType != type) |
0 | 316 { |
317 return false; | |
318 } | |
202 | 319 |
1247 | 320 db_.DeleteResource(id); |
0 | 321 |
202 | 322 if (listener_->HasRemainingLevel()) |
0 | 323 { |
202 | 324 ResourceType type = listener_->GetRemainingType(); |
325 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 326 |
327 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 328 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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329 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 330 target["RemainingAncestor"]["ID"] = uuid; |
331 } | |
332 else | |
333 { | |
334 target["RemainingAncestor"] = Json::nullValue; | |
335 } | |
336 | |
278
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337 t.Commit(0); |
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338 |
0 | 339 return true; |
340 } | |
341 | |
342 | |
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343 void ServerIndex::FlushThread(ServerIndex* that) |
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344 { |
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345 // By default, wait for 10 seconds before flushing |
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346 unsigned int sleep = 10; |
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347 |
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348 try |
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349 { |
744 | 350 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 351 std::string sleepString; |
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352 |
1247 | 353 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 354 Toolbox::IsInteger(sleepString)) |
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355 { |
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356 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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357 } |
511
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358 } |
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359 catch (boost::bad_lexical_cast&) |
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360 { |
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361 } |
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362 |
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363 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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364 |
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365 unsigned int count = 0; |
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366 |
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367 while (!that->done_) |
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368 { |
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369 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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370 count++; |
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371 if (count < sleep) |
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372 { |
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373 continue; |
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374 } |
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375 |
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376 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 377 that->db_.FlushToDisk(); |
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378 count = 0; |
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379 } |
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380 |
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381 LOG(INFO) << "Stopping the database flushing thread"; |
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382 } |
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383 |
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384 |
1247 | 385 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 386 int64_t series, |
387 const DicomMap& dicomSummary) | |
388 { | |
389 try | |
390 { | |
656 | 391 const DicomValue* value; |
392 const DicomValue* value2; | |
393 | |
433 | 394 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
395 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
396 { | |
397 // Patch for series with temporal positions thanks to Will Ryder | |
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398 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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399 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 400 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
401 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
402 } | |
403 | |
404 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
405 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
406 { | |
407 // Support of Cardio-PET images | |
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408 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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409 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 410 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
411 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
412 } | |
413 | |
414 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
415 { | |
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416 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 417 } |
418 } | |
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419 catch (OrthancException&) |
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420 { |
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421 } |
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422 catch (boost::bad_lexical_cast&) |
433 | 423 { |
424 } | |
425 } | |
426 | |
427 | |
1237 | 428 |
429 | |
1238 | 430 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 431 int64_t id, |
432 MetadataType type) | |
433 { | |
1238 | 434 std::string s; |
1247 | 435 if (!db_.LookupMetadata(s, id, type)) |
1237 | 436 { |
437 return false; | |
438 } | |
439 | |
440 try | |
441 { | |
1238 | 442 result = boost::lexical_cast<int64_t>(s); |
1237 | 443 return true; |
444 } | |
445 catch (boost::bad_lexical_cast&) | |
446 { | |
447 return false; | |
448 } | |
449 } | |
450 | |
451 | |
1297 | 452 void ServerIndex::LogChange(int64_t internalId, |
453 ChangeType changeType, | |
454 ResourceType resourceType, | |
455 const std::string& publicId) | |
456 { | |
457 ServerIndexChange change(changeType, resourceType, publicId); | |
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458 |
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459 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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460 { |
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461 db_.LogChange(internalId, change); |
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462 } |
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463 |
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464 assert(listener_.get() != NULL); |
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465 listener_->SignalChange(change); |
1297 | 466 } |
467 | |
1237 | 468 |
469 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
470 { | |
471 std::string oldValue; | |
472 | |
1247 | 473 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 474 { |
475 uint64_t oldNumber; | |
476 | |
477 try | |
478 { | |
479 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 480 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 481 return oldNumber + 1; |
482 } | |
483 catch (boost::bad_lexical_cast&) | |
484 { | |
485 throw OrthancException(ErrorCode_InternalError); | |
486 } | |
487 } | |
488 else | |
489 { | |
490 // Initialize the sequence at "1" | |
1247 | 491 db_.SetGlobalProperty(property, "1"); |
1237 | 492 return 1; |
493 } | |
494 } | |
495 | |
496 | |
497 | |
1299 | 498 int64_t ServerIndex::CreateResource(const std::string& publicId, |
499 ResourceType type) | |
500 { | |
501 int64_t id = db_.CreateResource(publicId, type); | |
502 | |
503 ChangeType changeType; | |
504 switch (type) | |
505 { | |
506 case ResourceType_Patient: | |
507 changeType = ChangeType_NewPatient; | |
508 break; | |
509 | |
510 case ResourceType_Study: | |
511 changeType = ChangeType_NewStudy; | |
512 break; | |
513 | |
514 case ResourceType_Series: | |
515 changeType = ChangeType_NewSeries; | |
516 break; | |
517 | |
518 case ResourceType_Instance: | |
519 changeType = ChangeType_NewInstance; | |
520 break; | |
521 | |
522 default: | |
523 throw OrthancException(ErrorCode_InternalError); | |
524 } | |
525 | |
526 ServerIndexChange change(changeType, type, publicId); | |
527 db_.LogChange(id, change); | |
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528 |
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529 assert(listener_.get() != NULL); |
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530 listener_->SignalChange(change); |
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531 |
1299 | 532 return id; |
533 } | |
534 | |
1286 | 535 |
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536 ServerIndex::ServerIndex(ServerContext& context, |
1247 | 537 IDatabaseWrapper& db) : |
511
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538 done_(false), |
1247 | 539 db_(db), |
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540 maximumStorageSize_(0), |
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541 maximumPatients_(0) |
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542 { |
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543 listener_.reset(new Listener(context)); |
1247 | 544 db_.SetListener(*listener_); |
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545 |
1247 | 546 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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547 |
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548 // Initial recycling if the parameters have changed since the last |
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549 // execution of Orthanc |
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550 StandaloneRecycling(); |
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551 |
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552 if (db.HasFlushToDisk()) |
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553 { |
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554 flushThread_ = boost::thread(FlushThread, this); |
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555 } |
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556 |
511
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557 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
206
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558 } |
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559 |
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560 |
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561 |
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562 ServerIndex::~ServerIndex() |
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563 { |
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564 if (!done_) |
511
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565 { |
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566 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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567 Stop(); |
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568 } |
0 | 569 } |
570 | |
571 | |
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572 |
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573 void ServerIndex::Stop() |
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574 { |
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575 if (!done_) |
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576 { |
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577 done_ = true; |
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578 |
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579 if (db_.HasFlushToDisk() && |
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580 flushThread_.joinable()) |
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581 { |
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582 flushThread_.join(); |
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583 } |
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584 |
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585 if (unstableResourcesMonitorThread_.joinable()) |
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586 { |
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587 unstableResourcesMonitorThread_.join(); |
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588 } |
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589 } |
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590 } |
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591 |
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592 |
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593 |
2188 | 594 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
595 int64_t instance, | |
596 MetadataType metadata, | |
597 const std::string& value) | |
598 { | |
599 db_.SetMetadata(instance, metadata, value); | |
600 instanceMetadata[metadata] = value; | |
601 } | |
602 | |
603 | |
604 | |
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605 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 606 DicomInstanceToStore& instanceToStore, |
607 const Attachments& attachments) | |
0 | 608 { |
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609 boost::mutex::scoped_lock lock(mutex_); |
0 | 610 |
1822 | 611 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
612 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
613 | |
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614 instanceMetadata.clear(); |
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615 |
1822 | 616 DicomInstanceHasher hasher(instanceToStore.GetSummary()); |
0 | 617 |
618 try | |
619 { | |
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620 Transaction t(*this); |
0 | 621 |
202 | 622 // Do nothing if the instance already exists |
0 | 623 { |
432 | 624 ResourceType type; |
625 int64_t tmp; | |
1294 | 626 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
432 | 627 { |
628 assert(type == ResourceType_Instance); | |
1247 | 629 db_.GetAllMetadata(instanceMetadata, tmp); |
432 | 630 return StoreStatus_AlreadyStored; |
631 } | |
0 | 632 } |
633 | |
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634 // Ensure there is enough room in the storage for the new instance |
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635 uint64_t instanceSize = 0; |
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636 for (Attachments::const_iterator it = attachments.begin(); |
656 | 637 it != attachments.end(); ++it) |
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638 { |
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639 instanceSize += it->GetCompressedSize(); |
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640 } |
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641 |
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642 Recycle(instanceSize, hasher.HashPatient()); |
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643 |
202 | 644 // Create the instance |
1299 | 645 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
2120 | 646 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 647 |
432 | 648 // Detect up to which level the patient/study/series/instance |
649 // hierarchy must be created | |
650 int64_t patient = -1, study = -1, series = -1; | |
651 bool isNewPatient = false; | |
652 bool isNewStudy = false; | |
653 bool isNewSeries = false; | |
654 | |
0 | 655 { |
432 | 656 ResourceType dummy; |
657 | |
1294 | 658 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
432 | 659 { |
660 assert(dummy == ResourceType_Series); | |
661 // The patient, the study and the series already exist | |
662 | |
1294 | 663 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
664 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
432 | 665 assert(ok); |
666 } | |
1294 | 667 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
432 | 668 { |
669 assert(dummy == ResourceType_Study); | |
670 | |
671 // New series: The patient and the study already exist | |
672 isNewSeries = true; | |
673 | |
1294 | 674 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
432 | 675 assert(ok); |
676 } | |
1294 | 677 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
432 | 678 { |
679 assert(dummy == ResourceType_Patient); | |
680 | |
681 // New study and series: The patient already exist | |
682 isNewStudy = true; | |
683 isNewSeries = true; | |
684 } | |
685 else | |
686 { | |
687 // New patient, study and series: Nothing exists | |
688 isNewPatient = true; | |
689 isNewStudy = true; | |
690 isNewSeries = true; | |
691 } | |
692 } | |
693 | |
694 // Create the series if needed | |
695 if (isNewSeries) | |
696 { | |
1299 | 697 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
2120 | 698 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 699 } |
202 | 700 |
432 | 701 // Create the study if needed |
702 if (isNewStudy) | |
703 { | |
1299 | 704 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
2120 | 705 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 706 } |
707 | |
708 // Create the patient if needed | |
709 if (isNewPatient) | |
710 { | |
1299 | 711 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
2120 | 712 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 713 } |
202 | 714 |
432 | 715 // Create the parent-to-child links |
1247 | 716 db_.AttachChild(series, instance); |
432 | 717 |
718 if (isNewSeries) | |
719 { | |
1247 | 720 db_.AttachChild(study, series); |
0 | 721 } |
432 | 722 |
723 if (isNewStudy) | |
0 | 724 { |
1247 | 725 db_.AttachChild(patient, study); |
0 | 726 } |
727 | |
432 | 728 // Sanity checks |
729 assert(patient != -1); | |
730 assert(study != -1); | |
731 assert(series != -1); | |
732 assert(instance != -1); | |
733 | |
202 | 734 // Attach the files to the newly created instance |
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735 for (Attachments::const_iterator it = attachments.begin(); |
656 | 736 it != attachments.end(); ++it) |
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737 { |
1247 | 738 db_.AddAttachment(instance, *it); |
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739 } |
202 | 740 |
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741 // Attach the user-specified metadata |
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742 for (MetadataMap::const_iterator |
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743 it = metadata.begin(); it != metadata.end(); ++it) |
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744 { |
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745 switch (it->first.first) |
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746 { |
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747 case ResourceType_Patient: |
1247 | 748 db_.SetMetadata(patient, it->first.second, it->second); |
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749 break; |
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750 |
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751 case ResourceType_Study: |
1247 | 752 db_.SetMetadata(study, it->first.second, it->second); |
1006
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753 break; |
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754 |
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755 case ResourceType_Series: |
1247 | 756 db_.SetMetadata(series, it->first.second, it->second); |
1006
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757 break; |
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758 |
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759 case ResourceType_Instance: |
2188 | 760 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
1006
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761 break; |
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762 |
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763 default: |
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764 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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765 } |
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766 } |
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767 |
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768 // Attach the auto-computed metadata for the patient/study/series levels |
2140 | 769 std::string now = SystemToolbox::GetNowIsoString(); |
1247 | 770 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
771 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
772 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
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DicomInstanceToStore
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|
773 |
a226e0959d8b
DicomInstanceToStore
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774 // Attach the auto-computed metadata for the instance level, |
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775 // reflecting these additions into the input metadata map |
2188 | 776 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
777 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, instanceToStore.GetRemoteAet()); | |
2189
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778 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
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779 EnumerationToString(instanceToStore.GetRequestOrigin())); |
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780 |
1823
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781 { |
2189
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782 std::string s; |
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783 if (instanceToStore.LookupTransferSyntax(s)) |
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784 { |
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785 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
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786 } |
1823
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787 } |
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788 |
202 | 789 const DicomValue* value; |
2208
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790 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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791 !value->IsNull() && |
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792 !value->IsBinary()) |
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793 { |
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794 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
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795 } |
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|
796 |
202 | 797 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
798 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 799 { |
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800 if (!value->IsNull() && |
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801 !value->IsBinary()) |
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|
802 { |
2188 | 803 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
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804 } |
0 | 805 } |
806 | |
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diff
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|
807 // Check whether the series of this new instance is now completed |
202 | 808 if (isNewSeries) |
809 { | |
1247 | 810 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 811 } |
812 | |
205
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813 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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814 if (seriesStatus == SeriesStatus_Complete) |
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815 { |
1237 | 816 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
205
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|
817 } |
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|
818 |
511
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819 // Mark the parent resources of this instance as unstable |
1177
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820 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
5b2d8c280ac2
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diff
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|
821 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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|
822 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
511
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823 |
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824 t.Commit(instanceSize); |
268
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825 |
0 | 826 return StoreStatus_Success; |
827 } | |
62 | 828 catch (OrthancException& e) |
0 | 829 { |
1247 | 830 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 831 } |
832 | |
833 return StoreStatus_Failure; | |
834 } | |
835 | |
836 | |
238 | 837 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 838 { |
206
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839 boost::mutex::scoped_lock lock(mutex_); |
238 | 840 target = Json::objectValue; |
0 | 841 |
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|
842 uint64_t cs = currentStorageSize_; |
1247 | 843 assert(cs == db_.GetTotalCompressedSize()); |
844 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
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438
diff
changeset
|
845 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 846 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
61ce8147f30d
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Sebastien Jodogne <s.jodogne@gmail.com>
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1306
diff
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|
847 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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|
848 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 849 |
1247 | 850 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
851 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
852 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
853 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 854 } |
855 | |
187
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diff
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|
856 |
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186
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857 |
585 | 858 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 859 { |
860 // Get the expected number of instances in this series (from the metadata) | |
1238 | 861 int64_t expected; |
862 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 863 { |
864 return SeriesStatus_Unknown; | |
865 } | |
866 | |
867 // Loop over the instances of this series | |
868 std::list<int64_t> children; | |
1247 | 869 db_.GetChildrenInternalId(children, id); |
199 | 870 |
1238 | 871 std::set<int64_t> instances; |
199 | 872 for (std::list<int64_t>::const_iterator |
656 | 873 it = children.begin(); it != children.end(); ++it) |
199 | 874 { |
875 // Get the index of this instance in the series | |
1238 | 876 int64_t index; |
877 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 878 { |
879 return SeriesStatus_Unknown; | |
880 } | |
881 | |
656 | 882 if (!(index > 0 && index <= expected)) |
199 | 883 { |
884 // Out-of-range instance index | |
885 return SeriesStatus_Inconsistent; | |
886 } | |
887 | |
888 if (instances.find(index) != instances.end()) | |
889 { | |
890 // Twice the same instance index | |
891 return SeriesStatus_Inconsistent; | |
892 } | |
893 | |
894 instances.insert(index); | |
895 } | |
896 | |
1238 | 897 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 898 { |
899 return SeriesStatus_Complete; | |
900 } | |
901 else | |
902 { | |
903 return SeriesStatus_Missing; | |
904 } | |
905 } | |
906 | |
907 | |
202 | 908 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
909 int64_t resourceId, |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
910 ResourceType resourceType) |
198
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|
911 { |
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|
912 DicomMap tags; |
1247 | 913 db_.GetMainDicomTags(tags, resourceId); |
1676
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
914 |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
915 if (resourceType == ResourceType_Study) |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
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1668
diff
changeset
|
916 { |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
917 DicomMap t1, t2; |
f079f3efe33b
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parents:
1668
diff
changeset
|
918 tags.ExtractStudyInformation(t1); |
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parents:
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diff
changeset
|
919 tags.ExtractPatientInformation(t2); |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
920 |
f079f3efe33b
patient tags reported in studies
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parents:
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diff
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|
921 target["MainDicomTags"] = Json::objectValue; |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
922 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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diff
changeset
|
923 |
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diff
changeset
|
924 target["PatientMainDicomTags"] = Json::objectValue; |
f079f3efe33b
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diff
changeset
|
925 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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diff
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|
926 } |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
927 else |
f079f3efe33b
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parents:
1668
diff
changeset
|
928 { |
f079f3efe33b
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parents:
1668
diff
changeset
|
929 target["MainDicomTags"] = Json::objectValue; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
930 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
f079f3efe33b
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|
931 } |
198
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932 } |
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933 |
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diff
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|
934 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 935 const std::string& publicId, |
936 ResourceType expectedType) | |
198
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937 { |
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938 result = Json::objectValue; |
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939 |
206
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diff
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|
940 boost::mutex::scoped_lock lock(mutex_); |
199 | 941 |
198
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942 // Lookup for the requested resource |
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943 int64_t id; |
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|
944 ResourceType type; |
1294 | 945 if (!db_.LookupResource(id, type, publicId) || |
199 | 946 type != expectedType) |
198
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947 { |
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948 return false; |
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949 } |
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950 |
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951 // Find the parent resource (if it exists) |
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952 if (type != ResourceType_Patient) |
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953 { |
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diff
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|
954 int64_t parentId; |
1247 | 955 if (!db_.LookupParent(parentId, id)) |
198
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956 { |
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|
957 throw OrthancException(ErrorCode_InternalError); |
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958 } |
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|
959 |
1247 | 960 std::string parent = db_.GetPublicId(parentId); |
198
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961 |
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962 switch (type) |
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963 { |
269
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diff
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|
964 case ResourceType_Study: |
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|
965 result["ParentPatient"] = parent; |
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diff
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|
966 break; |
198
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|
967 |
269
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diff
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|
968 case ResourceType_Series: |
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|
969 result["ParentStudy"] = parent; |
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diff
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|
970 break; |
198
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before refactoring of ServerIndex::GetXXX
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diff
changeset
|
971 |
269
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diff
changeset
|
972 case ResourceType_Instance: |
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|
973 result["ParentSeries"] = parent; |
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diff
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|
974 break; |
198
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diff
changeset
|
975 |
269
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diff
changeset
|
976 default: |
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|
977 throw OrthancException(ErrorCode_InternalError); |
198
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|
978 } |
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changeset
|
979 } |
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diff
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|
980 |
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changeset
|
981 // List the children resources |
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diff
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|
982 std::list<std::string> children; |
1247 | 983 db_.GetChildrenPublicId(children, id); |
198
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before refactoring of ServerIndex::GetXXX
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|
984 |
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diff
changeset
|
985 if (type != ResourceType_Instance) |
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diff
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|
986 { |
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diff
changeset
|
987 Json::Value c = Json::arrayValue; |
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diff
changeset
|
988 |
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diff
changeset
|
989 for (std::list<std::string>::const_iterator |
656 | 990 it = children.begin(); it != children.end(); ++it) |
198
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changeset
|
991 { |
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diff
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|
992 c.append(*it); |
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before refactoring of ServerIndex::GetXXX
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diff
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|
993 } |
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diff
changeset
|
994 |
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diff
changeset
|
995 switch (type) |
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diff
changeset
|
996 { |
269
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diff
changeset
|
997 case ResourceType_Patient: |
f6fdf5abe751
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diff
changeset
|
998 result["Studies"] = c; |
f6fdf5abe751
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diff
changeset
|
999 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1000 |
269
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diff
changeset
|
1001 case ResourceType_Study: |
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diff
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|
1002 result["Series"] = c; |
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diff
changeset
|
1003 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
1004 |
269
f6fdf5abe751
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diff
changeset
|
1005 case ResourceType_Series: |
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diff
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|
1006 result["Instances"] = c; |
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diff
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|
1007 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1008 |
269
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diff
changeset
|
1009 default: |
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diff
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|
1010 throw OrthancException(ErrorCode_InternalError); |
198
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diff
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|
1011 } |
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|
1012 } |
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|
1013 |
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diff
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|
1014 // Set the resource type |
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diff
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|
1015 switch (type) |
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diff
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|
1016 { |
269
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diff
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|
1017 case ResourceType_Patient: |
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diff
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|
1018 result["Type"] = "Patient"; |
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diff
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|
1019 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1020 |
269
f6fdf5abe751
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268
diff
changeset
|
1021 case ResourceType_Study: |
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diff
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|
1022 result["Type"] = "Study"; |
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diff
changeset
|
1023 break; |
199 | 1024 |
269
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diff
changeset
|
1025 case ResourceType_Series: |
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diff
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|
1026 { |
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268
diff
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|
1027 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1028 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
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|
1029 |
1238 | 1030 int64_t i; |
1237 | 1031 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1032 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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diff
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|
1033 else |
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268
diff
changeset
|
1034 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
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199
diff
changeset
|
1035 |
269
f6fdf5abe751
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268
diff
changeset
|
1036 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1037 } |
9c58b2b03cf0
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parents:
199
diff
changeset
|
1038 |
269
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diff
changeset
|
1039 case ResourceType_Instance: |
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diff
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|
1040 { |
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diff
changeset
|
1041 result["Type"] = "Instance"; |
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diff
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|
1042 |
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268
diff
changeset
|
1043 FileInfo attachment; |
1247 | 1044 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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diff
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|
1045 { |
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diff
changeset
|
1046 throw OrthancException(ErrorCode_InternalError); |
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diff
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|
1047 } |
200
9c58b2b03cf0
refactoring of read operations
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199
diff
changeset
|
1048 |
269
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diff
changeset
|
1049 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
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268
diff
changeset
|
1050 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1051 |
1238 | 1052 int64_t i; |
1237 | 1053 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1054 result["IndexInSeries"] = static_cast<int>(i); |
269
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diff
changeset
|
1055 else |
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diff
changeset
|
1056 result["IndexInSeries"] = Json::nullValue; |
198
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changeset
|
1057 |
269
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diff
changeset
|
1058 break; |
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|
1059 } |
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diff
changeset
|
1060 |
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diff
changeset
|
1061 default: |
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changeset
|
1062 throw OrthancException(ErrorCode_InternalError); |
198
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|
1063 } |
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|
1064 |
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|
1065 // Record the remaining information |
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diff
changeset
|
1066 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1067 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
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|
1068 |
315 | 1069 std::string tmp; |
1070 | |
1247 | 1071 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1072 { |
315 | 1073 result["AnonymizedFrom"] = tmp; |
1236 | 1074 } |
315 | 1075 |
1247 | 1076 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1077 { |
315 | 1078 result["ModifiedFrom"] = tmp; |
1236 | 1079 } |
315 | 1080 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1081 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1082 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1083 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1084 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1085 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1086 |
1247 | 1087 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1088 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1089 result["LastUpdate"] = tmp; |
1236 | 1090 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1091 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1092 |
198
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diff
changeset
|
1093 return true; |
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diff
changeset
|
1094 } |
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diff
changeset
|
1095 |
0 | 1096 |
232
5368bbe813cf
refactoring of attachments
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parents:
231
diff
changeset
|
1097 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
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parents:
231
diff
changeset
|
1098 const std::string& instanceUuid, |
233 | 1099 FileContentType contentType) |
0 | 1100 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1101 boost::mutex::scoped_lock lock(mutex_); |
0 | 1102 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1103 int64_t id; |
a1b9d1e1497b
failed attempt to compile with linux standard base
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parents:
192
diff
changeset
|
1104 ResourceType type; |
1294 | 1105 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1106 { |
1113
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1107 throw OrthancException(ErrorCode_UnknownResource); |
192
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1108 } |
193
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1109 |
1247 | 1110 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1111 { |
233 | 1112 assert(attachment.GetContentType() == contentType); |
232
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1113 return true; |
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1114 } |
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1115 else |
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1116 { |
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1117 return false; |
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1118 } |
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1119 } |
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1120 |
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1121 |
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1122 |
1354 | 1123 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1124 ResourceType resourceType) |
0 | 1125 { |
1357 | 1126 boost::mutex::scoped_lock lock(mutex_); |
1127 db_.GetAllPublicIds(target, resourceType); | |
0 | 1128 } |
1129 | |
1130 | |
1509
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1131 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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1132 ResourceType resourceType, |
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1133 size_t since, |
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1134 size_t limit) |
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1135 { |
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1136 if (limit == 0) |
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1137 { |
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1138 target.clear(); |
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1139 return; |
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1140 } |
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1141 |
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1142 boost::mutex::scoped_lock lock(mutex_); |
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1143 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1144 } |
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1145 |
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1146 |
1244 | 1147 template <typename T> |
1148 static void FormatLog(Json::Value& target, | |
1149 const std::list<T>& log, | |
1150 const std::string& name, | |
1151 bool done, | |
1152 int64_t since) | |
1240 | 1153 { |
1154 Json::Value items = Json::arrayValue; | |
1244 | 1155 for (typename std::list<T>::const_iterator |
1304 | 1156 it = log.begin(); it != log.end(); ++it) |
1240 | 1157 { |
1158 Json::Value item; | |
1159 it->Format(item); | |
1160 items.append(item); | |
1161 } | |
1162 | |
1163 target = Json::objectValue; | |
1244 | 1164 target[name] = items; |
1240 | 1165 target["Done"] = done; |
1166 | |
1305 | 1167 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1168 target["Last"] = static_cast<int>(last); |
1169 } | |
1170 | |
1171 | |
1247 | 1172 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1173 int64_t since, |
0 | 1174 unsigned int maxResults) |
1175 { | |
1240 | 1176 std::list<ServerIndexChange> changes; |
1177 bool done; | |
1178 | |
1179 { | |
1180 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1181 db_.GetChanges(changes, done, since, maxResults); |
1240 | 1182 } |
1183 | |
1244 | 1184 FormatLog(target, changes, "Changes", done, since); |
237
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1185 } |
0 | 1186 |
1240 | 1187 |
1247 | 1188 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1189 { |
1240 | 1190 std::list<ServerIndexChange> changes; |
1191 | |
1192 { | |
1193 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1194 db_.GetLastChange(changes); |
1240 | 1195 } |
1196 | |
1244 | 1197 FormatLog(target, changes, "Changes", true, 0); |
0 | 1198 } |
231 | 1199 |
1240 | 1200 |
231 | 1201 void ServerIndex::LogExportedResource(const std::string& publicId, |
1202 const std::string& remoteModality) | |
1203 { | |
1204 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1205 Transaction transaction(*this); |
231 | 1206 |
1207 int64_t id; | |
1208 ResourceType type; | |
1294 | 1209 if (!db_.LookupResource(id, type, publicId)) |
231 | 1210 { |
1211 throw OrthancException(ErrorCode_InternalError); | |
1212 } | |
1213 | |
1214 std::string patientId; | |
1215 std::string studyInstanceUid; | |
1216 std::string seriesInstanceUid; | |
1217 std::string sopInstanceUid; | |
1218 | |
1219 int64_t currentId = id; | |
1220 ResourceType currentType = type; | |
1221 | |
1222 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1223 bool done = false; | |
1224 while (!done) | |
1225 { | |
1226 DicomMap map; | |
1247 | 1227 db_.GetMainDicomTags(map, currentId); |
231 | 1228 |
1229 switch (currentType) | |
1230 { | |
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1231 case ResourceType_Patient: |
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1232 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1233 { |
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1234 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1235 } |
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1236 done = true; |
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1237 break; |
231 | 1238 |
269
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1239 case ResourceType_Study: |
2090
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1240 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1241 { |
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1242 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1243 } |
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1244 currentType = ResourceType_Patient; |
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1245 break; |
231 | 1246 |
269
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1247 case ResourceType_Series: |
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1248 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1249 { |
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1250 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1251 } |
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1252 currentType = ResourceType_Study; |
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1253 break; |
231 | 1254 |
269
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1255 case ResourceType_Instance: |
2090
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1256 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1257 { |
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1258 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1259 } |
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1260 currentType = ResourceType_Series; |
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1261 break; |
231 | 1262 |
269
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1263 default: |
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1264 throw OrthancException(ErrorCode_InternalError); |
231 | 1265 } |
1266 | |
1267 // If we have not reached the Patient level, find the parent of | |
1268 // the current resource | |
1269 if (!done) | |
1270 { | |
1247 | 1271 bool ok = db_.LookupParent(currentId, currentId); |
375
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1272 assert(ok); |
231 | 1273 } |
1274 } | |
1275 | |
1246 | 1276 ExportedResource resource(-1, |
1277 type, | |
1278 publicId, | |
1279 remoteModality, | |
2140 | 1280 SystemToolbox::GetNowIsoString(), |
1246 | 1281 patientId, |
1282 studyInstanceUid, | |
1283 seriesInstanceUid, | |
1284 sopInstanceUid); | |
1310
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1285 |
1247 | 1286 db_.LogExportedResource(resource); |
1310
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|
1287 transaction.Commit(0); |
231 | 1288 } |
1289 | |
1290 | |
1247 | 1291 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1292 int64_t since, |
1293 unsigned int maxResults) | |
1294 { | |
1244 | 1295 std::list<ExportedResource> exported; |
1296 bool done; | |
1297 | |
1298 { | |
1299 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1300 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1301 } |
1302 | |
1303 FormatLog(target, exported, "Exports", done, since); | |
231 | 1304 } |
237
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1305 |
1244 | 1306 |
1247 | 1307 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1308 { |
1244 | 1309 std::list<ExportedResource> exported; |
1310 | |
1311 { | |
1312 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1313 db_.GetLastExportedResource(exported); |
1244 | 1314 } |
1315 | |
1316 FormatLog(target, exported, "Exports", true, 0); | |
237
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1317 } |
268
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1318 |
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1319 |
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1320 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1321 { |
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1322 if (maximumStorageSize_ != 0) |
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1323 { |
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1324 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1325 assert(db_.GetTotalCompressedSize() == currentSize); |
278
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1326 |
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1327 if (currentSize + instanceSize > maximumStorageSize_) |
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1328 { |
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1329 return true; |
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1330 } |
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1331 } |
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1332 |
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1333 if (maximumPatients_ != 0) |
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1334 { |
1247 | 1335 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1336 if (patientCount > maximumPatients_) |
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1337 { |
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1338 return true; |
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1339 } |
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1340 } |
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1341 |
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1342 return false; |
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1343 } |
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1344 |
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1345 |
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1346 void ServerIndex::Recycle(uint64_t instanceSize, |
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1347 const std::string& newPatientId) |
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1348 { |
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1349 if (!IsRecyclingNeeded(instanceSize)) |
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1350 { |
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1351 return; |
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1352 } |
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1353 |
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1354 // Check whether other DICOM instances from this patient are |
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1355 // already stored |
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1356 int64_t patientToAvoid; |
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1357 ResourceType type; |
1294 | 1358 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1359 |
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1360 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1361 { |
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1362 throw OrthancException(ErrorCode_InternalError); |
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1363 } |
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1364 |
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1365 // Iteratively select patient to remove until there is enough |
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1366 // space in the DICOM store |
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1367 int64_t patientToRecycle; |
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1368 while (true) |
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1369 { |
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1370 // If other instances of this patient are already in the store, |
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1371 // we must avoid to recycle them |
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1372 bool ok = hasPatientToAvoid ? |
1247 | 1373 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1374 db_.SelectPatientToRecycle(patientToRecycle); | |
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1375 |
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1376 if (!ok) |
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1377 { |
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1378 throw OrthancException(ErrorCode_FullStorage); |
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1379 } |
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1380 |
1331
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1381 VLOG(1) << "Recycling one patient"; |
1247 | 1382 db_.DeleteResource(patientToRecycle); |
269
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1383 |
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1384 if (!IsRecyclingNeeded(instanceSize)) |
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1385 { |
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1386 // OK, we're done |
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1387 break; |
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1388 } |
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1389 } |
268
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1390 } |
269
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1391 |
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1392 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1393 { |
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1394 boost::mutex::scoped_lock lock(mutex_); |
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1395 maximumPatients_ = count; |
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1396 |
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1397 if (count == 0) |
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1398 { |
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1399 LOG(WARNING) << "No limit on the number of stored patients"; |
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1400 } |
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1401 else |
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1402 { |
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1403 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1404 } |
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1405 |
269
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1406 StandaloneRecycling(); |
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1407 } |
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1408 |
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1409 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1410 { |
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1411 boost::mutex::scoped_lock lock(mutex_); |
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1412 maximumStorageSize_ = size; |
270
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1413 |
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1414 if (size == 0) |
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1415 { |
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1416 LOG(WARNING) << "No limit on the size of the storage area"; |
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1417 } |
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1418 else |
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1419 { |
440
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diff
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|
1420 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1421 } |
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1422 |
269
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1423 StandaloneRecycling(); |
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1424 } |
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1425 |
272
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1426 void ServerIndex::StandaloneRecycling() |
269
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1427 { |
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1428 // WARNING: No mutex here, do not include this as a public method |
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1429 Transaction t(*this); |
269
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1430 Recycle(0, ""); |
278
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1431 t.Commit(0); |
269
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1432 } |
272
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1433 |
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1434 |
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1435 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1436 { |
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1437 boost::mutex::scoped_lock lock(mutex_); |
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1438 |
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1439 // Lookup for the requested resource |
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1440 int64_t id; |
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1441 ResourceType type; |
1294 | 1442 if (!db_.LookupResource(id, type, publicId) || |
272
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1443 type != ResourceType_Patient) |
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1444 { |
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1445 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1446 } |
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1447 |
1247 | 1448 return db_.IsProtectedPatient(id); |
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1449 } |
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1450 |
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1451 |
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1452 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1453 bool isProtected) |
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1454 { |
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1455 boost::mutex::scoped_lock lock(mutex_); |
1310
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1456 Transaction transaction(*this); |
272
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1457 |
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1458 // Lookup for the requested resource |
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1459 int64_t id; |
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1460 ResourceType type; |
1294 | 1461 if (!db_.LookupResource(id, type, publicId) || |
272
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1462 type != ResourceType_Patient) |
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1463 { |
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1464 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1465 } |
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1466 |
1247 | 1467 db_.SetProtectedPatient(id, isProtected); |
1310
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1468 transaction.Commit(0); |
272
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1469 |
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1470 if (isProtected) |
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1471 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1472 else |
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1473 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1474 } |
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1475 |
304 | 1476 |
714
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1477 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1478 const std::string& publicId) |
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1479 { |
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1480 result.clear(); |
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1481 |
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1482 boost::mutex::scoped_lock lock(mutex_); |
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1483 |
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1484 ResourceType type; |
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1485 int64_t resource; |
1294 | 1486 if (!db_.LookupResource(resource, type, publicId)) |
714
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1487 { |
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1488 throw OrthancException(ErrorCode_UnknownResource); |
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1489 } |
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1490 |
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1491 if (type == ResourceType_Instance) |
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1492 { |
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1493 // An instance cannot have a child |
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1494 throw OrthancException(ErrorCode_BadParameterType); |
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1495 } |
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1496 |
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1497 std::list<int64_t> tmp; |
1247 | 1498 db_.GetChildrenInternalId(tmp, resource); |
714
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1499 |
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1500 for (std::list<int64_t>::const_iterator |
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1501 it = tmp.begin(); it != tmp.end(); ++it) |
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1502 { |
1247 | 1503 result.push_back(db_.GetPublicId(*it)); |
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1504 } |
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1505 } |
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1506 |
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1507 |
304 | 1508 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1509 const std::string& publicId) | |
1510 { | |
1511 result.clear(); | |
1512 | |
1513 boost::mutex::scoped_lock lock(mutex_); | |
1514 | |
1515 ResourceType type; | |
1516 int64_t top; | |
1294 | 1517 if (!db_.LookupResource(top, type, publicId)) |
304 | 1518 { |
1519 throw OrthancException(ErrorCode_UnknownResource); | |
1520 } | |
1521 | |
1522 if (type == ResourceType_Instance) | |
1523 { | |
1524 // The resource is already an instance: Do not go down the hierarchy | |
1525 result.push_back(publicId); | |
1526 return; | |
1527 } | |
1528 | |
1529 std::stack<int64_t> toExplore; | |
1530 toExplore.push(top); | |
1531 | |
1532 std::list<int64_t> tmp; | |
1533 | |
1534 while (!toExplore.empty()) | |
1535 { | |
1536 // Get the internal ID of the current resource | |
1537 int64_t resource = toExplore.top(); | |
1538 toExplore.pop(); | |
1539 | |
1247 | 1540 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1541 { |
1247 | 1542 result.push_back(db_.GetPublicId(resource)); |
304 | 1543 } |
1544 else | |
1545 { | |
1546 // Tag all the children of this resource as to be explored | |
1247 | 1547 db_.GetChildrenInternalId(tmp, resource); |
304 | 1548 for (std::list<int64_t>::const_iterator |
656 | 1549 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1550 { |
1551 toExplore.push(*it); | |
1552 } | |
1553 } | |
1554 } | |
1555 } | |
1556 | |
306
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1557 |
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1558 void ServerIndex::SetMetadata(const std::string& publicId, |
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1559 MetadataType type, |
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1560 const std::string& value) |
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1561 { |
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1562 boost::mutex::scoped_lock lock(mutex_); |
1773
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1563 Transaction t(*this); |
306
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1564 |
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1565 ResourceType rtype; |
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1566 int64_t id; |
1294 | 1567 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1568 { |
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1569 throw OrthancException(ErrorCode_UnknownResource); |
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1570 } |
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1571 |
1247 | 1572 db_.SetMetadata(id, type, value); |
1773
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1573 |
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1574 if (IsUserMetadata(type)) |
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1575 { |
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1576 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1577 } |
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1578 |
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1579 t.Commit(0); |
306
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1580 } |
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1581 |
438 | 1582 |
1583 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1584 MetadataType type) | |
1585 { | |
1586 boost::mutex::scoped_lock lock(mutex_); | |
1773
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|
1587 Transaction t(*this); |
438 | 1588 |
1589 ResourceType rtype; | |
1590 int64_t id; | |
1294 | 1591 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1592 { |
1593 throw OrthancException(ErrorCode_UnknownResource); | |
1594 } | |
1595 | |
1247 | 1596 db_.DeleteMetadata(id, type); |
1773
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1597 |
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1598 if (IsUserMetadata(type)) |
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1599 { |
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1600 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1601 } |
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1602 |
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|
1603 t.Commit(0); |
438 | 1604 } |
1605 | |
1606 | |
306
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1607 bool ServerIndex::LookupMetadata(std::string& target, |
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1608 const std::string& publicId, |
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1609 MetadataType type) |
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1610 { |
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1611 boost::mutex::scoped_lock lock(mutex_); |
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1612 |
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1613 ResourceType rtype; |
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1614 int64_t id; |
1294 | 1615 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1616 { |
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1617 throw OrthancException(ErrorCode_UnknownResource); |
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1618 } |
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1619 |
1247 | 1620 return db_.LookupMetadata(target, id, type); |
306
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1621 } |
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1622 |
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1623 |
739 | 1624 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1625 const std::string& publicId) |
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1626 { |
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1627 boost::mutex::scoped_lock lock(mutex_); |
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1628 |
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1629 ResourceType rtype; |
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1630 int64_t id; |
1294 | 1631 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1632 { |
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1633 throw OrthancException(ErrorCode_UnknownResource); |
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1634 } |
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1635 |
1247 | 1636 db_.ListAvailableMetadata(target, id); |
436
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1637 } |
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1638 |
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1639 |
697
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1640 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1641 const std::string& publicId, |
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|
1642 ResourceType expectedType) |
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1643 { |
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|
1644 boost::mutex::scoped_lock lock(mutex_); |
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1645 |
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1646 ResourceType type; |
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|
1647 int64_t id; |
1294 | 1648 if (!db_.LookupResource(id, type, publicId) || |
697
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1649 expectedType != type) |
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|
1650 { |
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|
1651 throw OrthancException(ErrorCode_UnknownResource); |
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1652 } |
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1653 |
1247 | 1654 db_.ListAvailableAttachments(target, id); |
697
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1655 } |
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diff
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|
1656 |
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|
1657 |
306
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|
1658 bool ServerIndex::LookupParent(std::string& target, |
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|
1659 const std::string& publicId) |
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1660 { |
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|
1661 boost::mutex::scoped_lock lock(mutex_); |
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|
1662 |
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1663 ResourceType type; |
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1664 int64_t id; |
1294 | 1665 if (!db_.LookupResource(id, type, publicId)) |
306
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|
1666 { |
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1667 throw OrthancException(ErrorCode_UnknownResource); |
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|
1668 } |
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1669 |
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1670 int64_t parentId; |
1247 | 1671 if (db_.LookupParent(parentId, id)) |
306
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1672 { |
1247 | 1673 target = db_.GetPublicId(parentId); |
306
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|
1674 return true; |
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|
1675 } |
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|
1676 else |
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|
1677 { |
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|
1678 return false; |
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|
1679 } |
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|
1680 } |
310 | 1681 |
1682 | |
1683 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1684 { | |
1685 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1686 Transaction transaction(*this); |
311 | 1687 |
1237 | 1688 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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|
1689 transaction.Commit(0); |
311 | 1690 |
1691 return seq; | |
310 | 1692 } |
315 | 1693 |
1694 | |
1695 | |
1696 void ServerIndex::LogChange(ChangeType changeType, | |
1697 const std::string& publicId) | |
1698 { | |
1699 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1700 Transaction transaction(*this); |
315 | 1701 |
1702 int64_t id; | |
1703 ResourceType type; | |
1294 | 1704 if (!db_.LookupResource(id, type, publicId)) |
315 | 1705 { |
1706 throw OrthancException(ErrorCode_UnknownResource); | |
1707 } | |
1708 | |
1237 | 1709 LogChange(id, changeType, type, publicId); |
1310
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|
1710 transaction.Commit(0); |
315 | 1711 } |
413
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|
1712 |
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|
1713 |
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|
1714 void ServerIndex::DeleteChanges() |
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|
1715 { |
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|
1716 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1717 db_.ClearChanges(); |
413
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|
1718 } |
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|
1719 |
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|
1720 void ServerIndex::DeleteExportedResources() |
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|
1721 { |
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|
1722 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1723 db_.ClearExportedResources(); |
413
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|
1724 } |
440
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1725 |
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1726 |
646 | 1727 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1728 /* out */ uint64_t& uncompressedSize, | |
1729 /* out */ unsigned int& countStudies, | |
1730 /* out */ unsigned int& countSeries, | |
1731 /* out */ unsigned int& countInstances, | |
1732 /* in */ int64_t id, | |
1733 /* in */ ResourceType type) | |
440
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|
1734 { |
646 | 1735 std::stack<int64_t> toExplore; |
1736 toExplore.push(id); | |
440
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1737 |
646 | 1738 countInstances = 0; |
1739 countSeries = 0; | |
1740 countStudies = 0; | |
1741 compressedSize = 0; | |
1742 uncompressedSize = 0; | |
440
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1743 |
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1744 while (!toExplore.empty()) |
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1745 { |
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1746 // Get the internal ID of the current resource |
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1747 int64_t resource = toExplore.top(); |
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1748 toExplore.pop(); |
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1749 |
1247 | 1750 ResourceType thisType = db_.GetResourceType(resource); |
440
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1751 |
702
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|
1752 std::list<FileContentType> f; |
1247 | 1753 db_.ListAvailableAttachments(f, resource); |
702
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|
1754 |
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|
1755 for (std::list<FileContentType>::const_iterator |
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1756 it = f.begin(); it != f.end(); ++it) |
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|
1757 { |
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1758 FileInfo attachment; |
1247 | 1759 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1760 { |
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1761 compressedSize += attachment.GetCompressedSize(); |
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1762 uncompressedSize += attachment.GetUncompressedSize(); |
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1763 } |
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1764 } |
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1765 |
440
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1766 if (thisType == ResourceType_Instance) |
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1767 { |
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1768 countInstances++; |
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1769 } |
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1770 else |
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1771 { |
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1772 switch (thisType) |
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1773 { |
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|
1774 case ResourceType_Study: |
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1775 countStudies++; |
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1776 break; |
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1777 |
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|
1778 case ResourceType_Series: |
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1779 countSeries++; |
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1780 break; |
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1781 |
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1782 default: |
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1783 break; |
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1784 } |
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1785 |
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1786 // Tag all the children of this resource as to be explored |
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1787 std::list<int64_t> tmp; |
1247 | 1788 db_.GetChildrenInternalId(tmp, resource); |
440
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|
1789 for (std::list<int64_t>::const_iterator |
656 | 1790 it = tmp.begin(); it != tmp.end(); ++it) |
440
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|
1791 { |
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|
1792 toExplore.push(*it); |
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1793 } |
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1794 } |
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1795 } |
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1796 |
646 | 1797 if (countStudies == 0) |
1798 { | |
1799 countStudies = 1; | |
1800 } | |
1801 | |
1802 if (countSeries == 0) | |
1803 { | |
1804 countSeries = 1; | |
1805 } | |
1806 } | |
1807 | |
1808 | |
1809 | |
1810 void ServerIndex::GetStatistics(Json::Value& target, | |
1811 const std::string& publicId) | |
1812 { | |
1813 boost::mutex::scoped_lock lock(mutex_); | |
1814 | |
1815 ResourceType type; | |
1816 int64_t top; | |
1294 | 1817 if (!db_.LookupResource(top, type, publicId)) |
646 | 1818 { |
1819 throw OrthancException(ErrorCode_UnknownResource); | |
1820 } | |
1821 | |
1822 uint64_t uncompressedSize; | |
1823 uint64_t compressedSize; | |
1824 unsigned int countStudies; | |
1825 unsigned int countSeries; | |
1826 unsigned int countInstances; | |
1827 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1828 countSeries, countInstances, top, type); | |
1829 | |
440
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1830 target = Json::objectValue; |
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1831 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
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1832 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
440
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1833 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1834 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1835 |
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1836 switch (type) |
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1837 { |
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1838 // Do NOT add "break" below this point! |
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1839 case ResourceType_Patient: |
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1840 target["CountStudies"] = countStudies; |
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1841 |
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1842 case ResourceType_Study: |
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1843 target["CountSeries"] = countSeries; |
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1844 |
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1845 case ResourceType_Series: |
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1846 target["CountInstances"] = countInstances; |
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1847 |
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1848 case ResourceType_Instance: |
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1849 default: |
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1850 break; |
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1851 } |
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1852 } |
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1853 |
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1854 |
646 | 1855 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1856 /* out */ uint64_t& uncompressedSize, | |
1857 /* out */ unsigned int& countStudies, | |
1858 /* out */ unsigned int& countSeries, | |
1859 /* out */ unsigned int& countInstances, | |
1860 const std::string& publicId) | |
1861 { | |
1862 boost::mutex::scoped_lock lock(mutex_); | |
1863 | |
1864 ResourceType type; | |
1865 int64_t top; | |
1294 | 1866 if (!db_.LookupResource(top, type, publicId)) |
646 | 1867 { |
1868 throw OrthancException(ErrorCode_UnknownResource); | |
1869 } | |
1870 | |
1871 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1872 countSeries, countInstances, top, type); | |
1873 } | |
1874 | |
1875 | |
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1876 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
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1877 { |
2069
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1878 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60); |
511
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1879 if (stableAge <= 0) |
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1880 { |
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1881 stableAge = 60; |
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1882 } |
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1883 |
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1884 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1885 |
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1886 while (!that->done_) |
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1887 { |
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1888 // Check for stable resources each second |
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1889 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1890 |
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1891 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1892 |
511
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1893 while (!that->unstableResources_.IsEmpty() && |
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1894 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1895 { |
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1896 // This DICOM resource has not received any new instance for |
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1897 // some time. It can be considered as stable. |
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1898 |
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1899 UnstableResourcePayload payload; |
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1900 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1901 |
513 | 1902 // Ensure that the resource is still existing before logging the change |
1247 | 1903 if (that->db_.IsExistingResource(id)) |
511
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1904 { |
1177
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1905 switch (payload.GetResourceType()) |
513 | 1906 { |
1177
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1907 case ResourceType_Patient: |
1237 | 1908 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1909 break; |
511
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1910 |
1177
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1911 case ResourceType_Study: |
1237 | 1912 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1913 break; |
511
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1914 |
1177
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1915 case ResourceType_Series: |
1237 | 1916 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1917 break; |
1918 | |
1919 default: | |
1920 throw OrthancException(ErrorCode_InternalError); | |
1921 } | |
1922 | |
1923 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1924 } |
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1925 } |
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1926 } |
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1927 |
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1928 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1929 } |
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1930 |
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1931 |
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1932 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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1933 Orthanc::ResourceType type, |
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1934 const std::string& publicId) |
511
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1935 { |
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1936 // WARNING: Before calling this method, "mutex_" must be locked. |
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1937 |
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1938 assert(type == Orthanc::ResourceType_Patient || |
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1939 type == Orthanc::ResourceType_Study || |
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1940 type == Orthanc::ResourceType_Series); |
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1941 |
1177
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1942 UnstableResourcePayload payload(type, publicId); |
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1943 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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1944 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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1945 |
1237 | 1946 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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1947 } |
521 | 1948 |
1949 | |
1950 | |
1728
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1951 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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1952 ResourceType level, |
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1953 const DicomTag& tag, |
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1954 const std::string& value) |
615 | 1955 { |
1727 | 1956 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
1957 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
1958 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
1959 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
1960 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 1961 |
615 | 1962 result.clear(); |
1963 | |
1964 boost::mutex::scoped_lock lock(mutex_); | |
1965 | |
1746 | 1966 LookupIdentifierQuery query(level); |
1967 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
1968 query.Apply(result, db_); | |
615 | 1969 } |
1970 | |
1971 | |
699
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1972 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1973 const std::string& publicId) |
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1974 { |
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1975 boost::mutex::scoped_lock lock(mutex_); |
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1976 |
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1977 Transaction t(*this); |
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1978 |
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1979 ResourceType resourceType; |
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1980 int64_t resourceId; |
1294 | 1981 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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1982 { |
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1983 return StoreStatus_Failure; // Inexistent resource |
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1984 } |
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1985 |
704
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1986 // Remove possible previous attachment |
1247 | 1987 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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1988 |
704
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1989 // Locate the patient of the target resource |
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1990 int64_t patientId = resourceId; |
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|
1991 for (;;) |
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|
1992 { |
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1993 int64_t parent; |
1247 | 1994 if (db_.LookupParent(parent, patientId)) |
704
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|
1995 { |
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|
1996 // We have not reached the patient level yet |
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1997 patientId = parent; |
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|
1998 } |
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|
1999 else |
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|
2000 { |
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|
2001 // We have reached the patient level |
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|
2002 break; |
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|
2003 } |
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diff
changeset
|
2004 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2005 |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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702
diff
changeset
|
2006 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2007 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2008 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2009 |
1247 | 2010 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2011 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2012 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2013 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2014 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2015 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2016 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2017 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2018 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2019 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2020 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2021 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2022 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2023 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2024 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2025 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2026 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2027 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2028 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2029 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2030 int64_t id; |
1294 | 2031 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2032 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2033 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2034 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2035 |
1247 | 2036 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2037 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2038 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2039 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2040 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2041 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2042 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2043 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2044 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2045 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2046 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2047 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2048 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2049 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2050 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2051 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2052 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2053 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2054 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2055 int64_t id; |
1294 | 2056 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2057 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2058 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2059 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2060 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2061 std::list<MetadataType> metadata; |
1247 | 2062 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2063 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2064 for (std::list<MetadataType>::const_iterator |
1304 | 2065 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2066 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2067 std::string key = EnumerationToString(*it); |
1238 | 2068 |
2069 std::string value; | |
1247 | 2070 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2071 { |
2072 value.clear(); | |
2073 } | |
2074 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2075 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2076 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2077 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2078 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2079 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2080 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2081 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2082 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2083 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2084 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2085 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2086 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2087 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2088 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2089 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2090 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2091 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2092 { |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2093 boost::mutex::scoped_lock lock(mutex_); |
1239 | 2094 |
2095 std::string value; | |
1247 | 2096 if (db_.LookupGlobalProperty(value, property)) |
1239 | 2097 { |
2098 return value; | |
2099 } | |
2100 else | |
2101 { | |
2102 return defaultValue; | |
2103 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2104 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2105 |
1352 | 2106 |
2107 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2108 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2109 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2110 ResourceType levelOfInterest) |
1352 | 2111 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2112 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2113 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2114 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2115 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2116 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2117 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2118 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2119 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2120 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2121 |
1352 | 2122 result.Clear(); |
2123 | |
2124 boost::mutex::scoped_lock lock(mutex_); | |
2125 | |
2126 // Lookup for the requested resource | |
2127 int64_t id; | |
2128 ResourceType type; | |
2129 if (!db_.LookupResource(id, type, publicId) || | |
2130 type != expectedType) | |
2131 { | |
2132 return false; | |
2133 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2134 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2135 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2136 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2137 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2138 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2139 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2140 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2141 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2142 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2143 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2144 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2145 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2146 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2147 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2148 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2149 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2150 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2151 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2152 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2153 } |
1352 | 2154 else |
2155 { | |
2156 db_.GetMainDicomTags(result, id); | |
2157 return true; | |
2158 } | |
2159 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2160 |
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2161 |
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2162 bool ServerIndex::LookupResourceType(ResourceType& type, |
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2163 const std::string& publicId) |
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2164 { |
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2165 boost::mutex::scoped_lock lock(mutex_); |
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2166 |
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2167 int64_t id; |
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2168 return db_.LookupResource(id, type, publicId); |
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2169 } |
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2170 |
1668
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2171 |
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2172 unsigned int ServerIndex::GetDatabaseVersion() |
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2173 { |
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2174 boost::mutex::scoped_lock lock(mutex_); |
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2175 return db_.GetDatabaseVersion(); |
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2176 } |
1750
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2177 |
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2178 |
1753 | 2179 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2180 std::vector<std::string>& instances, | |
1757
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2181 const ::Orthanc::LookupResource& lookup) |
1750
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2182 { |
1753 | 2183 boost::mutex::scoped_lock lock(mutex_); |
2184 | |
2185 std::list<int64_t> tmp; | |
2186 lookup.FindCandidates(tmp, db_); | |
2187 | |
2188 resources.resize(tmp.size()); | |
2189 instances.resize(tmp.size()); | |
2190 | |
2191 size_t pos = 0; | |
2192 for (std::list<int64_t>::const_iterator | |
2193 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2194 { | |
1754 | 2195 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2196 | |
1753 | 2197 int64_t instance; |
2120 | 2198 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2199 { |
2200 throw OrthancException(ErrorCode_InternalError); | |
2201 } | |
2202 | |
2203 resources[pos] = db_.GetPublicId(*it); | |
2204 instances[pos] = db_.GetPublicId(instance); | |
2205 } | |
1750
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2206 } |
1898
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2207 |
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2208 |
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2209 bool ServerIndex::LookupParent(std::string& target, |
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2210 const std::string& publicId, |
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2211 ResourceType parentType) |
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2212 { |
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2213 boost::mutex::scoped_lock lock(mutex_); |
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2214 |
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2215 ResourceType type; |
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2216 int64_t id; |
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2217 if (!db_.LookupResource(id, type, publicId)) |
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2218 { |
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2219 throw OrthancException(ErrorCode_UnknownResource); |
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2220 } |
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2221 |
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2222 while (type != parentType) |
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2223 { |
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2224 int64_t parentId; |
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2225 |
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2226 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
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2227 !db_.LookupParent(parentId, id)) |
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2228 { |
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2229 return false; |
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2230 } |
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2231 |
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2232 id = parentId; |
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2233 type = GetParentResourceType(type); |
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2234 } |
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2235 |
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2236 target = db_.GetPublicId(id); |
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2237 return true; |
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2238 } |
0 | 2239 } |