Mercurial > hg > orthanc
annotate OrthancServer/ServerContext.cpp @ 3119:8f2bda0719f4
Fix issue #125 (Mongoose: /instances/{id} returns 500 on invalid HTTP Method)
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 14 Jan 2019 13:11:43 +0100 |
parents | 4e43e67f8ecf |
children | ce272138f15e |
rev | line source |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
224 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
224 | 35 #include "ServerContext.h" |
36 | |
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37 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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38 #include "../Core/FileStorage/StorageAccessor.h" |
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39 #include "../Core/HttpServer/FilesystemHttpSender.h" |
1525 | 40 #include "../Core/HttpServer/HttpStreamTranscoder.h" |
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41 #include "../Core/Logging.h" |
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42 #include "../Plugins/Engine/OrthancPlugins.h" |
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43 #include "OrthancConfiguration.h" |
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44 #include "OrthancRestApi/OrthancRestApi.h" |
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45 #include "Search/LookupResource.h" |
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46 #include "ServerJobs/OrthancJobUnserializer.h" |
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47 #include "ServerToolbox.h" |
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48 |
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49 #include <EmbeddedResources.h> |
794 | 50 #include <dcmtk/dcmdata/dcfilefo.h> |
224 | 51 |
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52 |
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53 |
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54 #define ENABLE_DICOM_CACHE 1 |
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55 |
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56 static const size_t DICOM_CACHE_SIZE = 2; |
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57 |
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58 /** |
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59 * IMPORTANT: We make the assumption that the same instance of |
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60 * FileStorage can be accessed from multiple threads. This seems OK |
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61 * since the filesystem implements the required locking mechanisms, |
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62 * but maybe a read-writer lock on the "FileStorage" could be |
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63 * useful. Conversely, "ServerIndex" already implements mutex-based |
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64 * locking. |
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65 **/ |
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66 |
224 | 67 namespace Orthanc |
68 { | |
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69 void ServerContext::ChangeThread(ServerContext* that, |
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70 unsigned int sleepDelay) |
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71 { |
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72 while (!that->done_) |
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73 { |
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74 std::auto_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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75 |
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76 if (obj.get() != NULL) |
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77 { |
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78 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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79 |
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80 boost::recursive_mutex::scoped_lock lock(that->listenersMutex_); |
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81 for (ServerListeners::iterator it = that->listeners_.begin(); |
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82 it != that->listeners_.end(); ++it) |
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83 { |
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84 try |
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85 { |
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86 try |
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87 { |
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88 it->GetListener().SignalChange(change); |
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89 } |
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90 catch (std::bad_alloc&) |
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91 { |
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92 LOG(ERROR) << "Not enough memory while signaling a change"; |
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93 } |
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94 catch (...) |
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95 { |
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96 throw OrthancException(ErrorCode_InternalError); |
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97 } |
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98 } |
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99 catch (OrthancException& e) |
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100 { |
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101 LOG(ERROR) << "Error in the " << it->GetDescription() |
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102 << " callback while signaling a change: " << e.What() |
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103 << " (code " << e.GetErrorCode() << ")"; |
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104 } |
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105 } |
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106 } |
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107 } |
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108 } |
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109 |
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110 |
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111 void ServerContext::SaveJobsThread(ServerContext* that, |
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112 unsigned int sleepDelay) |
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113 { |
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114 static const boost::posix_time::time_duration PERIODICITY = |
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115 boost::posix_time::seconds(10); |
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116 |
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117 boost::posix_time::ptime next = |
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118 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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119 |
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120 while (!that->done_) |
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121 { |
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122 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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123 |
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124 if (that->haveJobsChanged_ || |
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125 boost::posix_time::microsec_clock::universal_time() >= next) |
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126 { |
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127 that->haveJobsChanged_ = false; |
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128 that->SaveJobsEngine(); |
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129 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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130 } |
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131 } |
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132 } |
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133 |
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134 |
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135 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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136 { |
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137 haveJobsChanged_ = true; |
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138 mainLua_.SignalJobSubmitted(jobId); |
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139 } |
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140 |
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141 |
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142 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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143 { |
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144 haveJobsChanged_ = true; |
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145 mainLua_.SignalJobSuccess(jobId); |
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146 } |
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147 |
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148 |
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149 void ServerContext::SignalJobFailure(const std::string& jobId) |
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150 { |
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151 haveJobsChanged_ = true; |
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152 mainLua_.SignalJobFailure(jobId); |
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153 } |
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154 |
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155 |
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156 void ServerContext::SetupJobsEngine(bool unitTesting, |
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157 bool loadJobsFromDatabase) |
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158 { |
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159 if (loadJobsFromDatabase) |
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160 { |
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161 std::string serialized; |
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162 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry)) |
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163 { |
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164 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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165 OrthancJobUnserializer unserializer(*this); |
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166 |
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167 try |
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168 { |
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169 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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170 } |
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171 catch (OrthancException& e) |
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172 { |
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173 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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174 } |
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175 } |
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176 else |
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177 { |
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178 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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179 } |
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180 } |
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181 else |
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182 { |
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183 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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184 } |
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185 |
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186 jobsEngine_.GetRegistry().SetObserver(*this); |
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187 jobsEngine_.Start(); |
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188 isJobsEngineUnserialized_ = true; |
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189 |
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190 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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191 } |
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192 |
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193 |
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194 void ServerContext::SaveJobsEngine() |
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195 { |
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197 |
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198 try |
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199 { |
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200 Json::Value value; |
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201 jobsEngine_.GetRegistry().Serialize(value); |
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202 |
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203 Json::FastWriter writer; |
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204 std::string serialized = writer.write(value); |
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205 |
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206 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, serialized); |
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207 } |
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208 catch (OrthancException& e) |
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209 { |
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210 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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211 } |
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212 } |
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213 |
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214 |
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215 ServerContext::ServerContext(IDatabaseWrapper& database, |
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216 IStorageArea& area, |
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217 bool unitTesting, |
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218 size_t maxCompletedJobs) : |
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219 index_(*this, database, (unitTesting ? 20 : 500)), |
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220 area_(area), |
656 | 221 compressionEnabled_(false), |
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222 storeMD5_(true), |
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223 provider_(*this), |
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224 dicomCache_(provider_, DICOM_CACHE_SIZE), |
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225 mainLua_(*this), |
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226 filterLua_(*this), |
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227 luaListener_(*this), |
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228 jobsEngine_(maxCompletedJobs), |
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229 #if ORTHANC_ENABLE_PLUGINS == 1 |
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230 plugins_(NULL), |
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231 #endif |
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232 done_(false), |
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233 haveJobsChanged_(false), |
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234 isJobsEngineUnserialized_(false) |
224 | 235 { |
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236 { |
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237 OrthancConfiguration::ReaderLock lock; |
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238 |
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239 queryRetrieveArchive_.reset( |
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240 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 10))); |
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241 mediaArchive_.reset( |
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242 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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243 defaultLocalAet_ = lock.GetConfiguration().GetStringParameter("DicomAet", "ORTHANC"); |
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244 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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245 } |
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246 |
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247 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
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248 |
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249 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
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250 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
224 | 251 } |
252 | |
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253 |
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254 |
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255 ServerContext::~ServerContext() |
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256 { |
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257 if (!done_) |
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258 { |
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259 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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260 Stop(); |
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261 } |
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262 } |
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263 |
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264 |
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265 void ServerContext::Stop() |
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266 { |
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267 if (!done_) |
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268 { |
1459 | 269 { |
270 boost::recursive_mutex::scoped_lock lock(listenersMutex_); | |
271 listeners_.clear(); | |
272 } | |
273 | |
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274 done_ = true; |
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275 |
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276 if (changeThread_.joinable()) |
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277 { |
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278 changeThread_.join(); |
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279 } |
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280 |
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281 if (saveJobsThread_.joinable()) |
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282 { |
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283 saveJobsThread_.join(); |
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284 } |
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285 |
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286 jobsEngine_.GetRegistry().ResetObserver(); |
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287 |
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288 if (isJobsEngineUnserialized_) |
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289 { |
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290 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
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291 SaveJobsEngine(); |
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292 } |
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293 |
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294 // Do not change the order below! |
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295 jobsEngine_.Stop(); |
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296 index_.Stop(); |
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297 } |
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298 } |
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299 |
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300 |
236 | 301 void ServerContext::SetCompressionEnabled(bool enabled) |
302 { | |
303 if (enabled) | |
304 LOG(WARNING) << "Disk compression is enabled"; | |
305 else | |
306 LOG(WARNING) << "Disk compression is disabled"; | |
307 | |
308 compressionEnabled_ = enabled; | |
309 } | |
310 | |
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311 |
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312 void ServerContext::RemoveFile(const std::string& fileUuid, |
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313 FileContentType type) |
227
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314 { |
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315 area_.Remove(fileUuid, type); |
227
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316 } |
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317 |
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318 |
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319 StoreStatus ServerContext::Store(std::string& resultPublicId, |
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320 DicomInstanceToStore& dicom) |
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321 { |
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322 try |
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323 { |
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324 StorageAccessor accessor(area_); |
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325 |
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326 resultPublicId = dicom.GetHasher().HashInstance(); |
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327 |
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328 Json::Value simplifiedTags; |
2120 | 329 ServerToolbox::SimplifyTags(simplifiedTags, dicom.GetJson(), DicomToJsonFormat_Human); |
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330 |
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331 // Test if the instance must be filtered out |
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332 bool accepted = true; |
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333 |
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334 { |
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335 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
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336 |
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337 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
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338 { |
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339 try |
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340 { |
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341 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
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342 { |
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343 accepted = false; |
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344 break; |
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345 } |
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346 } |
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347 catch (OrthancException& e) |
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348 { |
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349 LOG(ERROR) << "Error in the " << it->GetDescription() |
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350 << " callback while receiving an instance: " << e.What() |
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351 << " (code " << e.GetErrorCode() << ")"; |
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352 throw; |
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353 } |
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354 } |
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355 } |
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356 |
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357 if (!accepted) |
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358 { |
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359 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
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360 return StoreStatus_FilteredOut; |
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361 } |
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362 |
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363 { |
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364 // Remove the file from the DicomCache (useful if |
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365 // "OverwriteInstances" is set to "true") |
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366 boost::mutex::scoped_lock lock(dicomCacheMutex_); |
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367 dicomCache_.Invalidate(resultPublicId); |
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368 } |
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369 |
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370 // TODO Should we use "gzip" instead? |
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371 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
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372 |
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373 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
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374 FileContentType_Dicom, compression, storeMD5_); |
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375 FileInfo jsonInfo = accessor.Write(dicom.GetJson().toStyledString(), |
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376 FileContentType_DicomAsJson, compression, storeMD5_); |
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377 |
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378 ServerIndex::Attachments attachments; |
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379 attachments.push_back(dicomInfo); |
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380 attachments.push_back(jsonInfo); |
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381 |
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382 typedef std::map<MetadataType, std::string> InstanceMetadata; |
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383 InstanceMetadata instanceMetadata; |
1822 | 384 StoreStatus status = index_.Store(instanceMetadata, dicom, attachments); |
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385 |
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386 // Only keep the metadata for the "instance" level |
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387 dicom.GetMetadata().clear(); |
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388 |
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389 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 390 it != instanceMetadata.end(); ++it) |
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391 { |
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392 dicom.GetMetadata().insert(std::make_pair(std::make_pair(ResourceType_Instance, it->first), |
ace99e272203
access metadata in plugins
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393 it->second)); |
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access metadata in plugins
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394 } |
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access metadata in plugins
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|
395 |
1004
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396 if (status != StoreStatus_Success) |
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397 { |
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398 accessor.Remove(dicomInfo); |
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399 accessor.Remove(jsonInfo); |
1004
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|
400 } |
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diff
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|
401 |
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diff
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|
402 switch (status) |
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|
403 { |
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DicomInstanceToStore
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diff
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|
404 case StoreStatus_Success: |
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DicomInstanceToStore
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405 LOG(INFO) << "New instance stored"; |
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DicomInstanceToStore
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diff
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|
406 break; |
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diff
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|
407 |
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|
408 case StoreStatus_AlreadyStored: |
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DicomInstanceToStore
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diff
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|
409 LOG(INFO) << "Already stored"; |
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DicomInstanceToStore
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diff
changeset
|
410 break; |
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DicomInstanceToStore
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parents:
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diff
changeset
|
411 |
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DicomInstanceToStore
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diff
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|
412 case StoreStatus_Failure: |
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DicomInstanceToStore
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diff
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|
413 LOG(ERROR) << "Store failure"; |
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DicomInstanceToStore
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parents:
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diff
changeset
|
414 break; |
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DicomInstanceToStore
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parents:
1002
diff
changeset
|
415 |
a226e0959d8b
DicomInstanceToStore
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1002
diff
changeset
|
416 default: |
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DicomInstanceToStore
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1002
diff
changeset
|
417 // This should never happen |
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DicomInstanceToStore
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diff
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|
418 break; |
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DicomInstanceToStore
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parents:
1002
diff
changeset
|
419 } |
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DicomInstanceToStore
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parents:
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diff
changeset
|
420 |
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DicomInstanceToStore
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diff
changeset
|
421 if (status == StoreStatus_Success || |
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DicomInstanceToStore
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parents:
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diff
changeset
|
422 status == StoreStatus_AlreadyStored) |
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DicomInstanceToStore
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diff
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|
423 { |
1456
68827c07e683
fix recursive calls with Lua
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1453
diff
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424 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
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1447
diff
changeset
|
425 |
1433
461e7554bff7
refactoring: LuaScripting
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1427
diff
changeset
|
426 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
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diff
changeset
|
427 { |
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OnStoredInstance callback in plugins
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diff
changeset
|
428 try |
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diff
changeset
|
429 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
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1550
diff
changeset
|
430 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
1066
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diff
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|
431 } |
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diff
changeset
|
432 catch (OrthancException& e) |
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diff
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|
433 { |
1433
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refactoring: LuaScripting
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diff
changeset
|
434 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
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2134
diff
changeset
|
435 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
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diff
changeset
|
436 << " (code " << e.GetErrorCode() << ")"; |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
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1065
diff
changeset
|
437 } |
bb82e5e818e9
OnStoredInstance callback in plugins
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1065
diff
changeset
|
438 } |
1004
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DicomInstanceToStore
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parents:
1002
diff
changeset
|
439 } |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
440 |
a226e0959d8b
DicomInstanceToStore
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1002
diff
changeset
|
441 return status; |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
442 } |
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DicomInstanceToStore
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1002
diff
changeset
|
443 catch (OrthancException& e) |
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DicomInstanceToStore
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parents:
1002
diff
changeset
|
444 { |
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DicomInstanceToStore
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1002
diff
changeset
|
445 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
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1002
diff
changeset
|
446 { |
2380
96b3ec054b69
reorganization in macros
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parents:
2304
diff
changeset
|
447 dicom.GetSummary().LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
448 } |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
449 |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
450 throw; |
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DicomInstanceToStore
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parents:
1002
diff
changeset
|
451 } |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
452 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
453 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
454 |
1146
200fcac0deb4
optimization for access to attachments
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parents:
1145
diff
changeset
|
455 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
456 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
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1145
diff
changeset
|
457 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
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parents:
224
diff
changeset
|
458 { |
232
5368bbe813cf
refactoring of attachments
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parents:
227
diff
changeset
|
459 FileInfo attachment; |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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1632
diff
changeset
|
460 if (!index_.LookupAttachment(attachment, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
461 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
462 throw OrthancException(ErrorCode_UnknownResource); |
236 | 463 } |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
464 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
465 StorageAccessor accessor(area_); |
1772
53e045b5a8ec
MIME content type can be associated to custom attachments (cf. "UserContentType")
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1758
diff
changeset
|
466 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
226
8a26a8e85edf
refactoring to read files
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parents:
224
diff
changeset
|
467 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
468 |
8a26a8e85edf
refactoring to read files
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parents:
224
diff
changeset
|
469 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
470 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
471 FileContentType attachmentType, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
472 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
473 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
474 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
475 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
476 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
477 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
478 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
479 FileInfo attachment; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
480 if (!index_.LookupAttachment(attachment, resourceId, attachmentType)) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
481 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
482 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
483 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
484 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
485 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
486 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
487 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
488 return; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
489 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
490 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
491 std::string content; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
492 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
493 StorageAccessor accessor(area_); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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1632
diff
changeset
|
494 accessor.Read(content, attachment); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
495 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
496 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
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1632
diff
changeset
|
497 content.size(), attachmentType, compression, storeMD5_); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
498 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
499 try |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
500 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
501 StoreStatus status = index_.AddAttachment(modified, resourceId); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
502 if (status != StoreStatus_Success) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
503 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
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|
504 accessor.Remove(modified); |
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505 throw OrthancException(ErrorCode_Database); |
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506 } |
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507 } |
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508 catch (OrthancException&) |
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509 { |
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510 accessor.Remove(modified); |
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511 throw; |
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512 } |
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513 } |
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514 |
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515 |
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516 void ServerContext::ReadDicomAsJsonInternal(std::string& result, |
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517 const std::string& instancePublicId) |
2127 | 518 { |
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519 FileInfo attachment; |
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520 if (index_.LookupAttachment(attachment, instancePublicId, FileContentType_DicomAsJson)) |
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521 { |
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522 ReadAttachment(result, attachment); |
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523 } |
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524 else |
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525 { |
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526 // The "DICOM as JSON" summary is not available from the Orthanc |
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527 // store (most probably deleted), reconstruct it from the DICOM file |
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528 std::string dicom; |
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529 ReadDicom(dicom, instancePublicId); |
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530 |
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531 LOG(INFO) << "Reconstructing the missing DICOM-as-JSON summary for instance: " |
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532 << instancePublicId; |
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533 |
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534 ParsedDicomFile parsed(dicom); |
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535 |
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536 Json::Value summary; |
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537 parsed.DatasetToJson(summary); |
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538 |
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539 result = summary.toStyledString(); |
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540 |
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541 if (!AddAttachment(instancePublicId, FileContentType_DicomAsJson, |
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542 result.c_str(), result.size())) |
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543 { |
2956 | 544 throw OrthancException(ErrorCode_InternalError, |
545 "Cannot associate the DICOM-as-JSON summary to instance: " + instancePublicId); | |
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546 } |
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547 } |
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548 } |
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549 |
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550 |
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551 void ServerContext::ReadDicomAsJson(std::string& result, |
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552 const std::string& instancePublicId, |
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553 const std::set<DicomTag>& ignoreTagLength) |
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554 { |
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555 if (ignoreTagLength.empty()) |
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556 { |
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557 ReadDicomAsJsonInternal(result, instancePublicId); |
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558 } |
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559 else |
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560 { |
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561 Json::Value tmp; |
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562 ReadDicomAsJson(tmp, instancePublicId, ignoreTagLength); |
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563 result = tmp.toStyledString(); |
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564 } |
2127 | 565 } |
566 | |
567 | |
2124 | 568 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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569 const std::string& instancePublicId, |
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570 const std::set<DicomTag>& ignoreTagLength) |
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571 { |
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572 if (ignoreTagLength.empty()) |
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573 { |
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574 std::string tmp; |
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575 ReadDicomAsJsonInternal(tmp, instancePublicId); |
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576 |
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577 Json::Reader reader; |
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578 if (!reader.parse(tmp, result)) |
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579 { |
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580 throw OrthancException(ErrorCode_CorruptedFile); |
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581 } |
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582 } |
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583 else |
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584 { |
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585 // The "DicomAsJson" attachment might have stored some tags as |
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586 // "too long". We are forced to re-parse the DICOM file. |
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587 std::string dicom; |
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588 ReadDicom(dicom, instancePublicId); |
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589 |
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590 ParsedDicomFile parsed(dicom); |
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591 parsed.DatasetToJson(result, ignoreTagLength); |
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592 } |
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593 } |
227
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594 |
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595 |
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596 void ServerContext::ReadAttachment(std::string& result, |
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597 const std::string& instancePublicId, |
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598 FileContentType content, |
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599 bool uncompressIfNeeded) |
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600 { |
232
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601 FileInfo attachment; |
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602 if (!index_.LookupAttachment(attachment, instancePublicId, content)) |
227
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603 { |
2956 | 604 throw OrthancException(ErrorCode_InternalError, |
605 "Unable to read attachment " + EnumerationToString(content) + | |
606 " of instance " + instancePublicId); | |
227
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607 } |
1550 | 608 |
609 if (uncompressIfNeeded) | |
610 { | |
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611 ReadAttachment(result, attachment); |
1550 | 612 } |
613 else | |
614 { | |
615 // Do not interpret the content of the storage area, return the | |
616 // raw data | |
617 area_.Read(result, attachment.GetUuid(), content); | |
618 } | |
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619 } |
285
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620 |
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621 |
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622 void ServerContext::ReadAttachment(std::string& result, |
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623 const FileInfo& attachment) |
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624 { |
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625 // This will decompress the attachment |
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626 StorageAccessor accessor(area_); |
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627 accessor.Read(result, attachment); |
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628 } |
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629 |
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|
630 |
285
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631 IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) |
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632 { |
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633 std::string content; |
2124 | 634 context_.ReadDicom(content, instancePublicId); |
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635 return new ParsedDicomFile(content); |
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636 } |
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637 |
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638 |
778
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639 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, |
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640 const std::string& instancePublicId) : |
1129
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641 that_(that), |
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642 lock_(that_.dicomCacheMutex_) |
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643 { |
291
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644 #if ENABLE_DICOM_CACHE == 0 |
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645 static std::auto_ptr<IDynamicObject> p; |
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646 p.reset(provider_.Provide(instancePublicId)); |
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647 dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); |
291
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648 #else |
778
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649 dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); |
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650 #endif |
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651 } |
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652 |
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653 |
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654 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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655 { |
285
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656 } |
304 | 657 |
658 | |
695
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659 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
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660 { |
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661 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
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662 storeMD5_ = storeMD5; |
695
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663 } |
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664 |
699
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697
diff
changeset
|
665 |
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666 bool ServerContext::AddAttachment(const std::string& resourceId, |
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667 FileContentType attachmentType, |
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|
668 const void* data, |
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669 size_t size) |
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670 { |
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|
671 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
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672 |
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673 // TODO Should we use "gzip" instead? |
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674 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
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diff
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|
675 |
1549
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diff
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|
676 StorageAccessor accessor(area_); |
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diff
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|
677 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
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parents:
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diff
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|
678 |
1549
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679 StoreStatus status = index_.AddAttachment(attachment, resourceId); |
699
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diff
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|
680 if (status != StoreStatus_Success) |
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diff
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|
681 { |
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682 accessor.Remove(attachment); |
699
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|
683 return false; |
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|
684 } |
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|
685 else |
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diff
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|
686 { |
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diff
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|
687 return true; |
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diff
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|
688 } |
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diff
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|
689 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
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diff
changeset
|
690 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
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parents:
1134
diff
changeset
|
691 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
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diff
changeset
|
692 bool ServerContext::DeleteResource(Json::Value& target, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
693 const std::string& uuid, |
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Plugins can retrieve the path to Orthanc and to its configuration file
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diff
changeset
|
694 ResourceType expectedType) |
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Plugins can retrieve the path to Orthanc and to its configuration file
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diff
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|
695 { |
2507 | 696 if (expectedType == ResourceType_Instance) |
697 { | |
698 // remove the file from the DicomCache | |
699 boost::mutex::scoped_lock lock(dicomCacheMutex_); | |
700 dicomCache_.Invalidate(uuid); | |
701 } | |
702 | |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
703 return index_.DeleteResource(target, uuid, expectedType); |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
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parents:
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diff
changeset
|
704 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
705 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
706 |
1198 | 707 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
708 { |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
709 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
710 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
711 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
712 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
713 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
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parents:
1433
diff
changeset
|
714 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
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parents:
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diff
changeset
|
715 { |
1459 | 716 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
717 | |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
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parents:
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diff
changeset
|
718 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
719 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
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parents:
1433
diff
changeset
|
720 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
721 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
722 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
723 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
724 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
725 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
726 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
727 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
728 { |
1459 | 729 boost::recursive_mutex::scoped_lock lock(listenersMutex_); |
730 | |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
731 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
732 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
733 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
734 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
735 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
736 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
737 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
738 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
739 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
740 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
741 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
742 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
743 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
744 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
745 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
746 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
747 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
748 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
749 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
750 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
751 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
752 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
753 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
754 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
755 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
756 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
757 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
758 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
759 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
760 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
761 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
762 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
763 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
764 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
765 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
766 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
767 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
768 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
769 return (plugins_ != NULL); |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
770 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
771 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
772 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
773 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
774 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
775 |
3021
2cbafb5d5a62
renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3015
diff
changeset
|
776 void ServerContext::Apply(ILookupVisitor& visitor, |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
777 const ::Orthanc::LookupResource& lookup, |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
778 size_t since, |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
779 size_t limit) |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
780 { |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
781 LookupMode mode; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
782 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
783 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
784 // New configuration option in 1.5.1 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
785 OrthancConfiguration::ReaderLock lock; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
786 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
787 std::string value = lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always"); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
788 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
789 if (value == "Always") |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
790 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
791 mode = LookupMode_DiskOnLookupAndAnswer; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
792 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
793 else if (value == "Never") |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
794 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
795 mode = LookupMode_DatabaseOnly; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
796 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
797 else if (value == "Answers") |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
798 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
799 mode = LookupMode_DiskOnAnswer; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
800 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
801 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
802 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
803 throw OrthancException(ErrorCode_ParameterOutOfRange, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
804 "Configuration option \"StorageAccessOnFind\" " |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
805 "should be \"Always\", \"Never\" or \"Answers\": " + value); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
806 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
807 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
808 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
809 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
810 std::vector<std::string> resources, instances; |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
811 GetIndex().FindCandidates(resources, instances, lookup); |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
812 |
3005
8265a6b56100
DicomMap::FromDicomAsJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3003
diff
changeset
|
813 LOG(INFO) << "Number of candidate resources after fast DB filtering on main DICOM tags: " << resources.size(); |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
814 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
815 assert(resources.size() == instances.size()); |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
816 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
817 size_t countResults = 0; |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
818 size_t skipped = 0; |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
819 bool complete = true; |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
820 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
821 const bool isDicomAsJsonNeeded = visitor.IsDicomAsJsonNeeded(); |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
822 |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
823 for (size_t i = 0; i < instances.size(); i++) |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
824 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
825 // Optimization in Orthanc 1.5.1 - Don't read the full JSON from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
826 // the disk if only "main DICOM tags" are to be returned |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
827 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
828 std::auto_ptr<Json::Value> dicomAsJson; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
829 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
830 bool hasOnlyMainDicomTags; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
831 DicomMap dicom; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
832 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
833 if (mode == LookupMode_DatabaseOnly || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
834 mode == LookupMode_DiskOnAnswer || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
835 lookup.HasOnlyMainDicomTags()) |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
836 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
837 // Case (1): The main DICOM tags, as stored in the database, |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
838 // are sufficient to look for match |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
839 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
840 if (!GetIndex().GetAllMainDicomTags(dicom, instances[i])) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
841 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
842 // The instance has been removed during the execution of the |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
843 // lookup, ignore it |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
844 continue; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
845 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
846 |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
847 hasOnlyMainDicomTags = true; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
848 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
849 else |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
850 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
851 // Case (2): Need to read the "DICOM-as-JSON" attachment from |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
852 // the storage area |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
853 dicomAsJson.reset(new Json::Value); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
854 ReadDicomAsJson(*dicomAsJson, instances[i]); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
855 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
856 dicom.FromDicomAsJson(*dicomAsJson); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
857 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
858 // This map contains the entire JSON, i.e. more than the main DICOM tags |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
859 hasOnlyMainDicomTags = false; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
860 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
861 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
862 if (lookup.IsMatch(dicom)) |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
863 { |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
864 if (skipped < since) |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
865 { |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
866 skipped++; |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
867 } |
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
868 else if (limit != 0 && |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
869 countResults >= limit) |
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2244
diff
changeset
|
870 { |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
871 // Too many results, don't mark as complete |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
872 complete = false; |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
873 break; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
874 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
875 else |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
876 { |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
877 if ((mode == LookupMode_DiskOnLookupAndAnswer || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
878 mode == LookupMode_DiskOnAnswer) && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
879 dicomAsJson.get() == NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
880 isDicomAsJsonNeeded) |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
881 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
882 dicomAsJson.reset(new Json::Value); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
883 ReadDicomAsJson(*dicomAsJson, instances[i]); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
884 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
885 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
886 if (hasOnlyMainDicomTags) |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
887 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
888 // This is Case (1): The variable "dicom" only contains the main DICOM tags |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
889 visitor.Visit(resources[i], instances[i], dicom, dicomAsJson.get()); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
890 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
891 else |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
892 { |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
893 // Remove the non-main DICOM tags from "dicom" if Case (2) |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
894 // was used, for consistency with Case (1) |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
895 |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
896 DicomMap mainDicomTags; |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
897 mainDicomTags.ExtractMainDicomTags(dicom); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
898 visitor.Visit(resources[i], instances[i], mainDicomTags, dicomAsJson.get()); |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
899 } |
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3005
diff
changeset
|
900 |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
901 countResults ++; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
902 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
903 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
904 } |
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2965
diff
changeset
|
905 |
3003
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
906 if (complete) |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
907 { |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
908 visitor.MarkAsComplete(); |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
909 } |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
910 |
5ae3ff2398e9
refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3001
diff
changeset
|
911 LOG(INFO) << "Number of matching resources: " << countResults; |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
912 } |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
913 |
2626 | 914 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
915 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
916 const std::string& publicId, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
917 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
918 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
919 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
920 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
921 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
922 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
923 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
924 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
925 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
926 if (index_.LookupMetadata(target, publicId, metadata)) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
927 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
928 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
929 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
930 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
931 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
932 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
933 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
934 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
935 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
936 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
937 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
938 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
939 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
940 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
941 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
942 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
943 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
944 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
945 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
946 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
947 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
948 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
949 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
950 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
951 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
952 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
953 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
954 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
955 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
956 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
957 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
958 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
959 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
960 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
961 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
962 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
963 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
964 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
965 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
966 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
967 // Store for reuse |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
968 index_.SetMetadata(publicId, metadata, target); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
969 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
970 } |
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971 else |
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972 { |
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973 // Should never happen |
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974 return false; |
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975 } |
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parents:
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976 } |
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parents:
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977 } |
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parents:
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978 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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979 { |
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parents:
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980 // No backward |
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981 return index_.LookupMetadata(target, publicId, metadata); |
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982 } |
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983 } |
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984 |
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985 |
2626 | 986 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
987 const std::string& publicId) | |
988 { | |
989 std::list<std::string> instances; | |
990 GetIndex().GetChildInstances(instances, publicId); | |
991 | |
992 job.Reserve(job.GetInstancesCount() + instances.size()); | |
993 | |
994 for (std::list<std::string>::const_iterator | |
995 it = instances.begin(); it != instances.end(); ++it) | |
996 { | |
997 job.AddInstance(*it); | |
998 } | |
999 } | |
2940
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1000 |
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1001 |
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1002 void ServerContext::SignalUpdatedModalities() |
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1003 { |
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1004 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1005 if (HasPlugins()) |
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1006 { |
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1007 GetPlugins().SignalUpdatedModalities(); |
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1008 } |
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1009 #endif |
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1010 } |
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1011 |
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1012 |
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1013 void ServerContext::SignalUpdatedPeers() |
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1014 { |
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1015 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1016 if (HasPlugins()) |
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1017 { |
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1018 GetPlugins().SignalUpdatedPeers(); |
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1019 } |
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1020 #endif |
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1021 } |
224 | 1022 } |