Mercurial > hg > orthanc
annotate OrthancServer/FromDcmtkBridge.cpp @ 1543:8b6d8f9b9f71
fix
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Thu, 13 Aug 2015 17:26:46 +0200 |
| parents | f967bdf8534e |
| children | ad1e127b4ed5 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
| 0 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
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32 |
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33 |
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34 #include "PrecompiledHeadersServer.h" |
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35 |
| 71 | 36 #ifndef NOMINMAX |
| 37 #define NOMINMAX | |
| 38 #endif | |
| 0 | 39 |
| 846 | 40 #include "Internals/DicomImageDecoder.h" |
| 41 | |
| 0 | 42 #include "FromDcmtkBridge.h" |
| 43 #include "ToDcmtkBridge.h" | |
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44 #include "OrthancInitialization.h" |
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45 #include "../Core/Logging.h" |
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46 #include "../Core/Toolbox.h" |
| 62 | 47 #include "../Core/OrthancException.h" |
| 799 | 48 #include "../Core/ImageFormats/PngWriter.h" |
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49 #include "../Core/Uuid.h" |
| 0 | 50 #include "../Core/DicomFormat/DicomString.h" |
| 51 #include "../Core/DicomFormat/DicomNullValue.h" | |
| 79 | 52 #include "../Core/DicomFormat/DicomIntegerPixelAccessor.h" |
| 0 | 53 |
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54 #include <list> |
| 71 | 55 #include <limits> |
| 56 | |
| 0 | 57 #include <boost/lexical_cast.hpp> |
| 58 | |
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59 #include <dcmtk/dcmdata/dcchrstr.h> |
| 0 | 60 #include <dcmtk/dcmdata/dcdicent.h> |
| 61 #include <dcmtk/dcmdata/dcdict.h> | |
| 62 #include <dcmtk/dcmdata/dcfilefo.h> | |
| 63 #include <dcmtk/dcmdata/dcistrmb.h> | |
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64 #include <dcmtk/dcmdata/dcuid.h> |
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65 #include <dcmtk/dcmdata/dcmetinf.h> |
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66 #include <dcmtk/dcmdata/dcdeftag.h> |
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67 |
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68 #include <dcmtk/dcmdata/dcvrae.h> |
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69 #include <dcmtk/dcmdata/dcvras.h> |
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70 #include <dcmtk/dcmdata/dcvrcs.h> |
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71 #include <dcmtk/dcmdata/dcvrda.h> |
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72 #include <dcmtk/dcmdata/dcvrds.h> |
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73 #include <dcmtk/dcmdata/dcvrdt.h> |
| 0 | 74 #include <dcmtk/dcmdata/dcvrfd.h> |
| 75 #include <dcmtk/dcmdata/dcvrfl.h> | |
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76 #include <dcmtk/dcmdata/dcvris.h> |
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77 #include <dcmtk/dcmdata/dcvrlo.h> |
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78 #include <dcmtk/dcmdata/dcvrlt.h> |
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79 #include <dcmtk/dcmdata/dcvrpn.h> |
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80 #include <dcmtk/dcmdata/dcvrsh.h> |
| 0 | 81 #include <dcmtk/dcmdata/dcvrsl.h> |
| 82 #include <dcmtk/dcmdata/dcvrss.h> | |
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83 #include <dcmtk/dcmdata/dcvrst.h> |
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84 #include <dcmtk/dcmdata/dcvrtm.h> |
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85 #include <dcmtk/dcmdata/dcvrui.h> |
| 0 | 86 #include <dcmtk/dcmdata/dcvrul.h> |
| 87 #include <dcmtk/dcmdata/dcvrus.h> | |
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88 #include <dcmtk/dcmdata/dcvrut.h> |
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89 #include <dcmtk/dcmdata/dcpixel.h> |
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90 #include <dcmtk/dcmdata/dcpixseq.h> |
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91 #include <dcmtk/dcmdata/dcpxitem.h> |
| 1131 | 92 #include <dcmtk/dcmdata/dcvrat.h> |
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93 |
| 0 | 94 |
| 2 | 95 #include <boost/math/special_functions/round.hpp> |
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96 #include <dcmtk/dcmdata/dcostrmb.h> |
| 0 | 97 |
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98 |
| 62 | 99 namespace Orthanc |
| 0 | 100 { |
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101 static inline uint16_t GetCharValue(char c) |
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102 { |
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103 if (c >= '0' && c <= '9') |
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104 return c - '0'; |
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105 else if (c >= 'a' && c <= 'f') |
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106 return c - 'a' + 10; |
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107 else if (c >= 'A' && c <= 'F') |
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108 return c - 'A' + 10; |
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109 else |
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110 return 0; |
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111 } |
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112 |
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113 static inline uint16_t GetTagValue(const char* c) |
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114 { |
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115 return ((GetCharValue(c[0]) << 12) + |
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116 (GetCharValue(c[1]) << 8) + |
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117 (GetCharValue(c[2]) << 4) + |
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118 GetCharValue(c[3])); |
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119 } |
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120 |
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121 |
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122 Encoding FromDcmtkBridge::DetectEncoding(DcmDataset& dataset) |
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123 { |
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124 // By default, Latin1 encoding is assumed |
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125 std::string s = Configuration::GetGlobalStringParameter("DefaultEncoding", ""); |
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126 Encoding encoding = s.empty() ? Encoding_Latin1 : StringToEncoding(s.c_str()); |
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127 |
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128 OFString tmp; |
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129 if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good()) |
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130 { |
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131 std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str())); |
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132 |
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133 if (characterSet.empty()) |
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134 { |
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135 // Empty specific character set tag: Use the default encoding |
| 1087 | 136 } |
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137 else if (GetDicomEncoding(encoding, characterSet.c_str())) |
| 1087 | 138 { |
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139 // The specific character set is supported by the Orthanc core |
| 1087 | 140 } |
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141 else |
| 1087 | 142 { |
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143 LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet |
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144 << ", fallback to ASCII (remove all special characters)"; |
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145 encoding = Encoding_Ascii; |
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146 } |
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147 } |
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148 else |
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149 { |
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150 // No specific character set tag: Use the default encoding |
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151 } |
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152 |
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153 return encoding; |
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154 } |
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155 |
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156 |
| 0 | 157 void FromDcmtkBridge::Convert(DicomMap& target, DcmDataset& dataset) |
| 158 { | |
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159 Encoding encoding = DetectEncoding(dataset); |
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160 |
| 0 | 161 target.Clear(); |
| 162 for (unsigned long i = 0; i < dataset.card(); i++) | |
| 163 { | |
| 164 DcmElement* element = dataset.getElement(i); | |
| 165 if (element && element->isLeaf()) | |
| 166 { | |
| 167 target.SetValue(element->getTag().getGTag(), | |
| 168 element->getTag().getETag(), | |
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169 ConvertLeafElement(*element, encoding)); |
| 0 | 170 } |
| 171 } | |
| 172 } | |
| 173 | |
| 174 | |
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175 DicomTag FromDcmtkBridge::Convert(const DcmTag& tag) |
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176 { |
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177 return DicomTag(tag.getGTag(), tag.getETag()); |
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178 } |
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179 |
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180 |
| 0 | 181 DicomTag FromDcmtkBridge::GetTag(const DcmElement& element) |
| 182 { | |
| 183 return DicomTag(element.getGTag(), element.getETag()); | |
| 184 } | |
| 185 | |
| 186 | |
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187 bool FromDcmtkBridge::IsPrivateTag(DcmTag& tag) |
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188 { |
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189 #if 1 |
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190 DcmTagKey tmp(tag.getGTag(), tag.getETag()); |
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191 return tmp.isPrivate(); |
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192 #else |
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193 // Implementation for Orthanc versions <= 0.8.5 |
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194 return (tag.getPrivateCreator() != NULL || |
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195 !strcmp("PrivateCreator", tag.getTagName())); // TODO - This may change with future versions of DCMTK |
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196 #endif |
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197 } |
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198 |
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199 |
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200 bool FromDcmtkBridge::IsPrivateTag(const DicomTag& tag) |
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201 { |
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202 #if 1 |
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203 DcmTagKey tmp(tag.GetGroup(), tag.GetElement()); |
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204 return tmp.isPrivate(); |
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205 #else |
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206 // Implementation for Orthanc versions <= 0.8.5 |
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207 DcmTag tmp(tag.GetGroup(), tag.GetElement()); |
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208 return IsPrivateTag(tmp); |
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209 #endif |
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210 } |
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211 |
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212 |
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213 DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element, |
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214 Encoding encoding) |
| 0 | 215 { |
| 216 if (!element.isLeaf()) | |
| 217 { | |
| 62 | 218 throw OrthancException("Only applicable to leaf elements"); |
| 0 | 219 } |
| 220 | |
| 221 if (element.isaString()) | |
| 222 { | |
| 223 char *c; | |
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224 if (element.getString(c).good()) |
| 0 | 225 { |
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226 if (c == NULL) // This case corresponds to the empty string |
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227 { |
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228 return new DicomString(""); |
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229 } |
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230 else |
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231 { |
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232 std::string s(c); |
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233 std::string utf8 = Toolbox::ConvertToUtf8(s, encoding); |
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234 return new DicomString(utf8); |
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235 } |
| 0 | 236 } |
| 237 else | |
| 238 { | |
| 239 return new DicomNullValue; | |
| 240 } | |
| 241 } | |
| 242 | |
| 243 try | |
| 244 { | |
| 245 // http://support.dcmtk.org/docs/dcvr_8h-source.html | |
| 246 switch (element.getVR()) | |
| 247 { | |
| 248 | |
| 249 /** | |
| 250 * TODO. | |
| 251 **/ | |
|
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252 |
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253 case EVR_OB: // other byte |
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254 case EVR_OF: // other float |
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255 case EVR_OW: // other word |
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256 case EVR_UN: // unknown value representation |
| 1131 | 257 return new DicomNullValue; |
|
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258 |
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259 /** |
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260 * String types, should never happen at this point because of |
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261 * "element.isaString()". |
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262 **/ |
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263 |
|
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264 case EVR_DS: // decimal string |
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265 case EVR_IS: // integer string |
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266 case EVR_AS: // age string |
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267 case EVR_DA: // date string |
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268 case EVR_DT: // date time string |
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269 case EVR_TM: // time string |
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270 case EVR_AE: // application entity title |
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271 case EVR_CS: // code string |
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272 case EVR_SH: // short string |
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273 case EVR_LO: // long string |
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274 case EVR_ST: // short text |
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275 case EVR_LT: // long text |
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276 case EVR_UT: // unlimited text |
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277 case EVR_PN: // person name |
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278 case EVR_UI: // unique identifier |
| 1131 | 279 return new DicomNullValue; |
| 0 | 280 |
| 281 | |
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282 /** |
| 1131 | 283 * Numberic types |
|
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284 **/ |
| 0 | 285 |
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286 case EVR_SL: // signed long |
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287 { |
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288 Sint32 f; |
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289 if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good()) |
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290 return new DicomString(boost::lexical_cast<std::string>(f)); |
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291 else |
| 1131 | 292 return new DicomNullValue; |
|
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293 } |
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294 |
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295 case EVR_SS: // signed short |
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296 { |
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297 Sint16 f; |
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298 if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good()) |
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299 return new DicomString(boost::lexical_cast<std::string>(f)); |
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300 else |
| 1131 | 301 return new DicomNullValue; |
|
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302 } |
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303 |
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304 case EVR_UL: // unsigned long |
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305 { |
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306 Uint32 f; |
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307 if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good()) |
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308 return new DicomString(boost::lexical_cast<std::string>(f)); |
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309 else |
| 1131 | 310 return new DicomNullValue; |
|
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311 } |
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312 |
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313 case EVR_US: // unsigned short |
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314 { |
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315 Uint16 f; |
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316 if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good()) |
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317 return new DicomString(boost::lexical_cast<std::string>(f)); |
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318 else |
| 1131 | 319 return new DicomNullValue; |
|
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320 } |
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321 |
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322 case EVR_FL: // float single-precision |
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323 { |
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324 Float32 f; |
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325 if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good()) |
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326 return new DicomString(boost::lexical_cast<std::string>(f)); |
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327 else |
| 1131 | 328 return new DicomNullValue; |
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329 } |
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330 |
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331 case EVR_FD: // float double-precision |
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332 { |
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333 Float64 f; |
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334 if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good()) |
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335 return new DicomString(boost::lexical_cast<std::string>(f)); |
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336 else |
| 1131 | 337 return new DicomNullValue; |
| 338 } | |
| 339 | |
| 340 | |
| 341 /** | |
| 342 * Attribute tag. | |
| 343 **/ | |
| 344 | |
| 345 case EVR_AT: | |
| 346 { | |
| 1147 | 347 DcmTagKey tag; |
| 348 if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good()) | |
| 349 { | |
| 350 DicomTag t(tag.getGroup(), tag.getElement()); | |
| 351 return new DicomString(t.Format()); | |
| 352 } | |
| 1131 | 353 else |
| 1147 | 354 { |
| 1131 | 355 return new DicomNullValue; |
| 1147 | 356 } |
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357 } |
| 0 | 358 |
| 359 | |
| 360 /** | |
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361 * Sequence types, should never occur at this point because of |
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362 * "element.isLeaf()". |
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363 **/ |
| 0 | 364 |
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365 case EVR_SQ: // sequence of items |
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366 return new DicomNullValue; |
| 0 | 367 |
| 368 | |
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369 /** |
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370 * Internal to DCMTK. |
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371 **/ |
| 0 | 372 |
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373 case EVR_ox: // OB or OW depending on context |
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374 case EVR_xs: // SS or US depending on context |
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375 case EVR_lt: // US, SS or OW depending on context, used for LUT Data (thus the name) |
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376 case EVR_na: // na="not applicable", for data which has no VR |
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377 case EVR_up: // up="unsigned pointer", used internally for DICOMDIR suppor |
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378 case EVR_item: // used internally for items |
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379 case EVR_metainfo: // used internally for meta info datasets |
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380 case EVR_dataset: // used internally for datasets |
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381 case EVR_fileFormat: // used internally for DICOM files |
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382 case EVR_dicomDir: // used internally for DICOMDIR objects |
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383 case EVR_dirRecord: // used internally for DICOMDIR records |
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384 case EVR_pixelSQ: // used internally for pixel sequences in a compressed image |
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385 case EVR_pixelItem: // used internally for pixel items in a compressed image |
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386 case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR) |
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387 case EVR_PixelData: // used internally for uncompressed pixeld data |
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388 case EVR_OverlayData: // used internally for overlay data |
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389 case EVR_UNKNOWN2B: // used internally for elements with unknown VR with 2-byte length field in explicit VR |
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390 return new DicomNullValue; |
| 0 | 391 |
| 392 | |
|
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393 /** |
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394 * Default case. |
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395 **/ |
| 0 | 396 |
|
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397 default: |
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398 return new DicomNullValue; |
| 0 | 399 } |
| 400 } | |
| 401 catch (boost::bad_lexical_cast) | |
| 402 { | |
| 403 return new DicomNullValue; | |
| 404 } | |
|
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405 catch (std::bad_cast) |
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406 { |
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407 return new DicomNullValue; |
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408 } |
| 0 | 409 } |
| 410 | |
| 411 | |
| 412 static void StoreElement(Json::Value& target, | |
| 413 DcmElement& element, | |
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414 unsigned int maxStringLength, |
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415 Encoding encoding); |
| 0 | 416 |
| 417 static void StoreItem(Json::Value& target, | |
| 418 DcmItem& item, | |
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419 unsigned int maxStringLength, |
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420 Encoding encoding) |
| 0 | 421 { |
| 422 target = Json::Value(Json::objectValue); | |
| 423 | |
| 424 for (unsigned long i = 0; i < item.card(); i++) | |
| 425 { | |
| 426 DcmElement* element = item.getElement(i); | |
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427 StoreElement(target, *element, maxStringLength, encoding); |
| 0 | 428 } |
| 429 } | |
| 430 | |
| 431 | |
| 432 static void StoreElement(Json::Value& target, | |
| 433 DcmElement& element, | |
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434 unsigned int maxStringLength, |
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435 Encoding encoding) |
| 0 | 436 { |
| 437 assert(target.type() == Json::objectValue); | |
| 438 | |
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439 DicomTag tag(FromDcmtkBridge::GetTag(element)); |
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440 const std::string formattedTag = tag.Format(); |
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441 |
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442 #if 0 |
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443 const std::string tagName = FromDcmtkBridge::GetName(tag); |
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444 #else |
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445 // This version of the code gives access to the name of the private tags |
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446 DcmTag tagbis(element.getTag()); |
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447 const std::string tagName(tagbis.getTagName()); |
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448 #endif |
| 0 | 449 |
| 450 if (element.isLeaf()) | |
| 451 { | |
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452 Json::Value value(Json::objectValue); |
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453 value["Name"] = tagName; |
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454 |
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455 if (tagbis.getPrivateCreator() != NULL) |
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456 { |
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457 value["PrivateCreator"] = tagbis.getPrivateCreator(); |
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458 } |
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459 |
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460 std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element, encoding)); |
| 0 | 461 if (v->IsNull()) |
| 462 { | |
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463 value["Type"] = "Null"; |
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464 value["Value"] = Json::nullValue; |
| 0 | 465 } |
| 466 else | |
| 467 { | |
| 468 std::string s = v->AsString(); | |
| 469 if (maxStringLength == 0 || | |
| 470 s.size() <= maxStringLength) | |
| 471 { | |
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472 value["Type"] = "String"; |
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473 value["Value"] = s; |
| 0 | 474 } |
| 475 else | |
| 476 { | |
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477 value["Type"] = "TooLong"; |
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478 value["Value"] = Json::nullValue; |
| 0 | 479 } |
| 480 } | |
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481 |
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482 target[formattedTag] = value; |
| 0 | 483 } |
| 484 else | |
| 485 { | |
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486 Json::Value children(Json::arrayValue); |
| 0 | 487 |
| 488 // "All subclasses of DcmElement except for DcmSequenceOfItems | |
| 489 // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset | |
| 490 // etc. are not." The following cast is thus OK. | |
| 491 DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element); | |
| 492 | |
| 493 for (unsigned long i = 0; i < sequence.card(); i++) | |
| 494 { | |
| 495 DcmItem* child = sequence.getItem(i); | |
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496 Json::Value& v = children.append(Json::objectValue); |
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497 StoreItem(v, *child, maxStringLength, encoding); |
| 0 | 498 } |
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499 |
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500 target[formattedTag]["Name"] = tagName; |
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501 target[formattedTag]["Type"] = "Sequence"; |
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502 target[formattedTag]["Value"] = children; |
| 0 | 503 } |
| 504 } | |
| 505 | |
| 506 | |
| 507 void FromDcmtkBridge::ToJson(Json::Value& root, | |
| 508 DcmDataset& dataset, | |
| 509 unsigned int maxStringLength) | |
| 510 { | |
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511 StoreItem(root, dataset, maxStringLength, DetectEncoding(dataset)); |
| 0 | 512 } |
| 513 | |
| 514 | |
| 515 | |
| 516 void FromDcmtkBridge::ToJson(Json::Value& target, | |
| 517 const std::string& path, | |
| 518 unsigned int maxStringLength) | |
| 519 { | |
| 520 DcmFileFormat dicom; | |
| 521 if (!dicom.loadFile(path.c_str()).good()) | |
| 522 { | |
| 62 | 523 throw OrthancException(ErrorCode_BadFileFormat); |
| 0 | 524 } |
| 525 else | |
| 526 { | |
| 527 FromDcmtkBridge::ToJson(target, *dicom.getDataset(), maxStringLength); | |
| 528 } | |
| 529 } | |
| 530 | |
| 531 | |
| 532 | |
| 533 std::string FromDcmtkBridge::GetName(const DicomTag& t) | |
| 534 { | |
| 106 | 535 // Some patches for important tags because of different DICOM |
| 536 // dictionaries between DCMTK versions | |
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537 std::string n = t.GetMainTagsName(); |
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538 if (n.size() != 0) |
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539 { |
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540 return n; |
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541 } |
| 106 | 542 // End of patches |
| 543 | |
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544 #if 0 |
| 0 | 545 DcmTagKey tag(t.GetGroup(), t.GetElement()); |
| 546 const DcmDataDictionary& dict = dcmDataDict.rdlock(); | |
| 547 const DcmDictEntry* entry = dict.findEntry(tag, NULL); | |
| 548 | |
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549 std::string s(DcmTag_ERROR_TagName); |
| 0 | 550 if (entry != NULL) |
| 551 { | |
| 552 s = std::string(entry->getTagName()); | |
| 553 } | |
| 554 | |
| 555 dcmDataDict.unlock(); | |
| 556 return s; | |
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557 #else |
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558 DcmTag tag(t.GetGroup(), t.GetElement()); |
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559 const char* name = tag.getTagName(); |
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560 if (name == NULL) |
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561 { |
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562 return DcmTag_ERROR_TagName; |
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563 } |
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564 else |
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565 { |
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566 return std::string(name); |
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567 } |
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568 #endif |
| 0 | 569 } |
| 570 | |
| 571 | |
| 304 | 572 DicomTag FromDcmtkBridge::ParseTag(const char* name) |
| 0 | 573 { |
| 304 | 574 if (strlen(name) == 9 && |
| 575 isxdigit(name[0]) && | |
| 576 isxdigit(name[1]) && | |
| 577 isxdigit(name[2]) && | |
| 578 isxdigit(name[3]) && | |
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579 (name[4] == '-' || name[4] == ',') && |
| 304 | 580 isxdigit(name[5]) && |
| 581 isxdigit(name[6]) && | |
| 582 isxdigit(name[7]) && | |
| 583 isxdigit(name[8])) | |
| 584 { | |
| 585 uint16_t group = GetTagValue(name); | |
| 586 uint16_t element = GetTagValue(name + 5); | |
| 587 return DicomTag(group, element); | |
| 588 } | |
| 589 | |
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590 #if 0 |
| 0 | 591 const DcmDataDictionary& dict = dcmDataDict.rdlock(); |
| 592 const DcmDictEntry* entry = dict.findEntry(name); | |
| 593 | |
| 594 if (entry == NULL) | |
| 595 { | |
| 596 dcmDataDict.unlock(); | |
| 62 | 597 throw OrthancException("Unknown DICOM tag"); |
| 0 | 598 } |
| 599 else | |
| 600 { | |
| 601 DcmTagKey key = entry->getKey(); | |
| 602 DicomTag tag(key.getGroup(), key.getElement()); | |
| 603 dcmDataDict.unlock(); | |
| 604 return tag; | |
| 605 } | |
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606 #else |
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607 DcmTag tag; |
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608 if (DcmTag::findTagFromName(name, tag).good()) |
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609 { |
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610 return DicomTag(tag.getGTag(), tag.getETag()); |
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611 } |
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612 else |
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613 { |
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614 throw OrthancException("Unknown DICOM tag"); |
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615 } |
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616 #endif |
| 0 | 617 } |
| 618 | |
| 619 | |
| 620 void FromDcmtkBridge::Print(FILE* fp, const DicomMap& m) | |
| 621 { | |
| 622 for (DicomMap::Map::const_iterator | |
| 656 | 623 it = m.map_.begin(); it != m.map_.end(); ++it) |
| 0 | 624 { |
| 625 DicomTag t = it->first; | |
| 626 std::string s = it->second->AsString(); | |
| 319 | 627 fprintf(fp, "0x%04x 0x%04x (%s) [%s]\n", t.GetGroup(), t.GetElement(), GetName(t).c_str(), s.c_str()); |
| 0 | 628 } |
| 629 } | |
| 630 | |
| 631 | |
| 632 void FromDcmtkBridge::ToJson(Json::Value& result, | |
| 1368 | 633 const DicomMap& values, |
| 634 bool simplify) | |
| 0 | 635 { |
| 636 if (result.type() != Json::objectValue) | |
| 637 { | |
| 62 | 638 throw OrthancException(ErrorCode_BadParameterType); |
| 0 | 639 } |
| 640 | |
| 641 result.clear(); | |
| 642 | |
| 643 for (DicomMap::Map::const_iterator | |
| 656 | 644 it = values.map_.begin(); it != values.map_.end(); ++it) |
| 0 | 645 { |
| 1368 | 646 if (simplify) |
| 647 { | |
| 648 result[GetName(it->first)] = it->second->AsString(); | |
| 649 } | |
| 650 else | |
| 651 { | |
| 652 Json::Value value = Json::objectValue; | |
| 653 | |
| 654 value["Name"] = GetName(it->first); | |
| 655 | |
| 656 if (it->second->IsNull()) | |
| 657 { | |
| 658 value["Type"] = "Null"; | |
| 659 value["Value"] = Json::nullValue; | |
| 660 } | |
| 661 else | |
| 662 { | |
| 663 value["Type"] = "String"; | |
| 664 value["Value"] = it->second->AsString(); | |
| 665 } | |
| 666 | |
| 667 result[it->first.Format()] = value; | |
| 668 } | |
| 0 | 669 } |
| 670 } | |
| 176 | 671 |
| 672 | |
| 788 | 673 std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level) |
| 176 | 674 { |
| 675 char uid[100]; | |
| 676 | |
| 677 switch (level) | |
| 678 { | |
| 788 | 679 case ResourceType_Patient: |
| 311 | 680 // The "PatientID" field is of type LO (Long String), 64 |
| 681 // Bytes Maximum. An UUID is of length 36, thus it can be used | |
| 682 // as a random PatientID. | |
| 683 return Toolbox::GenerateUuid(); | |
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684 |
| 788 | 685 case ResourceType_Instance: |
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686 return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT); |
| 176 | 687 |
| 788 | 688 case ResourceType_Series: |
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689 return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT); |
| 176 | 690 |
| 788 | 691 case ResourceType_Study: |
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692 return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT); |
| 176 | 693 |
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694 default: |
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695 throw OrthancException(ErrorCode_ParameterOutOfRange); |
| 176 | 696 } |
| 697 } | |
| 698 | |
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699 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
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700 DcmDataset& dataSet) |
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701 { |
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702 // Determine the transfer syntax which shall be used to write the |
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703 // information to the file. We always switch to the Little Endian |
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704 // syntax, with explicit length. |
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705 |
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706 // http://support.dcmtk.org/docs/dcxfer_8h-source.html |
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707 |
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708 |
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709 /** |
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710 * Note that up to Orthanc 0.7.1 (inclusive), the |
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711 * "EXS_LittleEndianExplicit" was always used to save the DICOM |
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712 * dataset into memory. We now keep the original transfer syntax |
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713 * (if available). |
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714 **/ |
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715 E_TransferSyntax xfer = dataSet.getOriginalXfer(); |
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716 if (xfer == EXS_Unknown) |
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717 { |
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718 // No information about the original transfer syntax: This is |
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719 // most probably a DICOM dataset that was read from memory. |
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720 xfer = EXS_LittleEndianExplicit; |
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721 } |
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722 |
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723 E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength; |
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724 |
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725 // Create the meta-header information |
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726 DcmFileFormat ff(&dataSet); |
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727 ff.validateMetaInfo(xfer); |
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728 ff.removeInvalidGroups(); |
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729 |
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730 // Create a memory buffer with the proper size |
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731 uint32_t s = ff.calcElementLength(xfer, encodingType); |
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732 buffer.resize(s); |
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733 DcmOutputBufferStream ob(&buffer[0], s); |
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734 |
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735 // Fill the memory buffer with the meta-header and the dataset |
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736 ff.transferInit(); |
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737 OFCondition c = ff.write(ob, xfer, encodingType, NULL, |
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738 /*opt_groupLength*/ EGL_recalcGL, |
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739 /*opt_paddingType*/ EPD_withoutPadding); |
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740 ff.transferEnd(); |
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741 |
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742 // Handle errors |
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743 if (c.good()) |
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744 { |
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745 return true; |
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746 } |
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747 else |
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748 { |
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749 buffer.clear(); |
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750 return false; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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751 } |
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752 } |
| 1360 | 753 |
| 754 | |
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755 ValueRepresentation FromDcmtkBridge::GetValueRepresentation(const DicomTag& tag) |
| 1360 | 756 { |
| 757 DcmTag t(tag.GetGroup(), tag.GetElement()); | |
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parents:
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758 switch (t.getEVR()) |
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parents:
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759 { |
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parents:
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760 case EVR_PN: |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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761 return ValueRepresentation_PatientName; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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762 |
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parents:
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763 case EVR_DA: |
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parents:
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764 return ValueRepresentation_Date; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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765 |
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parents:
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766 case EVR_DT: |
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8e23f16a198d
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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767 return ValueRepresentation_DateTime; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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768 |
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8e23f16a198d
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Sebastien Jodogne <s.jodogne@gmail.com>
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769 case EVR_TM: |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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770 return ValueRepresentation_Time; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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771 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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772 default: |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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773 return ValueRepresentation_Other; |
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8e23f16a198d
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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774 } |
| 1360 | 775 } |
| 776 | |
| 0 | 777 } |