Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2825:8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 19 Sep 2018 15:24:01 +0200 |
parents | 46061a91c88a |
children | c277e0421200 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
0 | 35 #include "ServerIndex.h" |
36 | |
6 | 37 #ifndef NOMINMAX |
2 | 38 #define NOMINMAX |
6 | 39 #endif |
40 | |
1198 | 41 #include "ServerIndexChange.h" |
8 | 42 #include "EmbeddedResources.h" |
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43 #include "OrthancInitialization.h" |
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44 #include "../Core/DicomParsing/ParsedDicomFile.h" |
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45 #include "ServerToolbox.h" |
0 | 46 #include "../Core/Toolbox.h" |
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47 #include "../Core/Logging.h" |
0 | 48 #include "../Core/DicomFormat/DicomArray.h" |
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49 |
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50 #include "../Core/DicomParsing/FromDcmtkBridge.h" |
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51 #include "ServerContext.h" |
1822 | 52 #include "DicomInstanceToStore.h" |
2122 | 53 #include "Search/LookupResource.h" |
0 | 54 |
55 #include <boost/lexical_cast.hpp> | |
56 #include <stdio.h> | |
57 | |
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58 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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59 |
62 | 60 namespace Orthanc |
0 | 61 { |
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62 class ServerIndex::Listener : public IDatabaseListener |
0 | 63 { |
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64 private: |
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65 struct FileToRemove |
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66 { |
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67 private: |
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68 std::string uuid_; |
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69 FileContentType type_; |
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70 |
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71 public: |
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72 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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73 type_(info.GetContentType()) |
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74 { |
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75 } |
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76 |
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77 const std::string& GetUuid() const |
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78 { |
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79 return uuid_; |
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80 } |
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81 |
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82 FileContentType GetContentType() const |
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83 { |
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84 return type_; |
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85 } |
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86 }; |
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87 |
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88 ServerContext& context_; |
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89 bool hasRemainingLevel_; |
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90 ResourceType remainingType_; |
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91 std::string remainingPublicId_; |
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92 std::list<FileToRemove> pendingFilesToRemove_; |
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93 std::list<ServerIndexChange> pendingChanges_; |
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94 uint64_t sizeOfFilesToRemove_; |
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95 bool insideTransaction_; |
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96 |
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97 void Reset() |
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98 { |
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99 sizeOfFilesToRemove_ = 0; |
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100 hasRemainingLevel_ = false; |
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101 pendingFilesToRemove_.clear(); |
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102 pendingChanges_.clear(); |
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103 } |
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104 |
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105 public: |
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106 Listener(ServerContext& context) : context_(context), |
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107 insideTransaction_(false) |
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108 { |
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109 Reset(); |
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110 assert(ResourceType_Patient < ResourceType_Study && |
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111 ResourceType_Study < ResourceType_Series && |
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112 ResourceType_Series < ResourceType_Instance); |
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113 } |
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114 |
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115 void StartTransaction() |
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116 { |
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117 Reset(); |
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118 insideTransaction_ = true; |
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119 } |
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120 |
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121 void EndTransaction() |
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122 { |
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123 insideTransaction_ = false; |
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124 } |
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125 |
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126 uint64_t GetSizeOfFilesToRemove() |
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127 { |
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128 return sizeOfFilesToRemove_; |
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129 } |
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131 void CommitFilesToRemove() |
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132 { |
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133 for (std::list<FileToRemove>::const_iterator |
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134 it = pendingFilesToRemove_.begin(); |
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135 it != pendingFilesToRemove_.end(); ++it) |
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136 { |
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137 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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138 } |
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139 } |
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141 void CommitChanges() |
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142 { |
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143 for (std::list<ServerIndexChange>::const_iterator |
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144 it = pendingChanges_.begin(); |
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145 it != pendingChanges_.end(); ++it) |
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146 { |
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147 context_.SignalChange(*it); |
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148 } |
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149 } |
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150 |
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151 virtual void SignalRemainingAncestor(ResourceType parentType, |
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152 const std::string& publicId) |
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153 { |
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154 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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155 |
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156 if (hasRemainingLevel_) |
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157 { |
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158 if (parentType < remainingType_) |
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159 { |
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160 remainingType_ = parentType; |
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161 remainingPublicId_ = publicId; |
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162 } |
1158 | 163 } |
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164 else |
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165 { |
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166 hasRemainingLevel_ = true; |
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167 remainingType_ = parentType; |
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168 remainingPublicId_ = publicId; |
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169 } |
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170 } |
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171 |
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172 virtual void SignalFileDeleted(const FileInfo& info) |
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173 { |
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174 assert(Toolbox::IsUuid(info.GetUuid())); |
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175 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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176 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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177 } |
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178 |
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179 virtual void SignalChange(const ServerIndexChange& change) |
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180 { |
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181 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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182 << EnumerationToString(change.GetResourceType()) << ": " |
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183 << EnumerationToString(change.GetChangeType()); |
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184 |
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185 if (insideTransaction_) |
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186 { |
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187 pendingChanges_.push_back(change); |
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188 } |
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189 else |
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190 { |
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191 context_.SignalChange(change); |
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192 } |
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193 } |
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194 |
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195 bool HasRemainingLevel() const |
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196 { |
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197 return hasRemainingLevel_; |
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198 } |
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199 |
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200 ResourceType GetRemainingType() const |
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201 { |
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202 assert(HasRemainingLevel()); |
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203 return remainingType_; |
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204 } |
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205 |
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206 const std::string& GetRemainingPublicId() const |
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207 { |
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208 assert(HasRemainingLevel()); |
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209 return remainingPublicId_; |
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210 } |
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211 }; |
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213 | |
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214 class ServerIndex::Transaction |
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215 { |
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216 private: |
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217 ServerIndex& index_; |
1235 | 218 std::auto_ptr<SQLite::ITransaction> transaction_; |
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219 bool isCommitted_; |
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220 |
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221 public: |
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222 Transaction(ServerIndex& index) : |
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223 index_(index), |
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224 isCommitted_(false) |
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225 { |
1247 | 226 transaction_.reset(index_.db_.StartTransaction()); |
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227 transaction_->Begin(); |
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228 |
1270 | 229 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
230 | |
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231 index_.listener_->StartTransaction(); |
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232 } |
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233 |
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234 ~Transaction() |
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235 { |
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236 index_.listener_->EndTransaction(); |
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237 |
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238 if (!isCommitted_) |
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239 { |
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240 transaction_->Rollback(); |
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241 } |
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242 } |
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243 |
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244 void Commit(uint64_t sizeOfAddedFiles) |
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245 { |
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246 if (!isCommitted_) |
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247 { |
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248 transaction_->Commit(); |
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249 |
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250 // We can remove the files once the SQLite transaction has |
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251 // been successfully committed. Some files might have to be |
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252 // deleted because of recycling. |
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253 index_.listener_->CommitFilesToRemove(); |
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254 |
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255 index_.currentStorageSize_ += sizeOfAddedFiles; |
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256 |
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257 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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258 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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259 |
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260 // Send all the pending changes to the Orthanc plugins |
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261 index_.listener_->CommitChanges(); |
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262 |
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263 isCommitted_ = true; |
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264 } |
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265 } |
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266 }; |
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267 |
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268 |
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269 class ServerIndex::UnstableResourcePayload |
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270 { |
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271 private: |
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272 ResourceType type_; |
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273 std::string publicId_; |
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274 boost::posix_time::ptime time_; |
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275 |
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276 public: |
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277 UnstableResourcePayload() : type_(ResourceType_Instance) |
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278 { |
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279 } |
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280 |
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281 UnstableResourcePayload(Orthanc::ResourceType type, |
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282 const std::string& publicId) : |
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283 type_(type), |
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284 publicId_(publicId) |
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285 { |
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286 time_ = boost::posix_time::second_clock::local_time(); |
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287 } |
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288 |
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289 unsigned int GetAge() const |
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290 { |
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291 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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292 } |
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293 |
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294 ResourceType GetResourceType() const |
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295 { |
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296 return type_; |
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297 } |
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298 |
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299 const std::string& GetPublicId() const |
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300 { |
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301 return publicId_; |
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302 } |
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303 }; |
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304 |
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305 |
212 | 306 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 307 const std::string& uuid, |
202 | 308 ResourceType expectedType) |
0 | 309 { |
206
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310 boost::mutex::scoped_lock lock(mutex_); |
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311 |
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312 Transaction t(*this); |
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313 |
202 | 314 int64_t id; |
315 ResourceType type; | |
1294 | 316 if (!db_.LookupResource(id, type, uuid) || |
202 | 317 expectedType != type) |
0 | 318 { |
319 return false; | |
320 } | |
202 | 321 |
1247 | 322 db_.DeleteResource(id); |
0 | 323 |
202 | 324 if (listener_->HasRemainingLevel()) |
0 | 325 { |
202 | 326 ResourceType type = listener_->GetRemainingType(); |
327 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 328 |
329 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 330 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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331 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 332 target["RemainingAncestor"]["ID"] = uuid; |
333 } | |
334 else | |
335 { | |
336 target["RemainingAncestor"] = Json::nullValue; | |
337 } | |
338 | |
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339 t.Commit(0); |
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340 |
0 | 341 return true; |
342 } | |
343 | |
344 | |
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345 void ServerIndex::FlushThread(ServerIndex* that, |
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346 unsigned int threadSleep) |
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347 { |
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348 // By default, wait for 10 seconds before flushing |
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349 unsigned int sleep = 10; |
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350 |
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351 try |
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352 { |
744 | 353 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 354 std::string sleepString; |
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355 |
1247 | 356 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 357 Toolbox::IsInteger(sleepString)) |
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358 { |
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359 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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360 } |
511
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361 } |
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362 catch (boost::bad_lexical_cast&) |
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363 { |
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364 } |
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365 |
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366 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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367 |
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368 unsigned int count = 0; |
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369 |
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370 while (!that->done_) |
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371 { |
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372 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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373 count++; |
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374 if (count < sleep) |
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375 { |
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376 continue; |
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377 } |
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378 |
2217 | 379 Logging::Flush(); |
380 | |
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381 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 382 that->db_.FlushToDisk(); |
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383 count = 0; |
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384 } |
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385 |
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386 LOG(INFO) << "Stopping the database flushing thread"; |
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387 } |
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388 |
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389 |
1247 | 390 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 391 int64_t series, |
392 const DicomMap& dicomSummary) | |
393 { | |
394 try | |
395 { | |
656 | 396 const DicomValue* value; |
397 const DicomValue* value2; | |
398 | |
433 | 399 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
400 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
401 { | |
402 // Patch for series with temporal positions thanks to Will Ryder | |
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403 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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404 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 405 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
406 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
407 } | |
408 | |
409 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
410 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
411 { | |
412 // Support of Cardio-PET images | |
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413 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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414 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 415 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
416 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
417 } | |
418 | |
419 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
420 { | |
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421 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 422 } |
423 } | |
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424 catch (OrthancException&) |
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425 { |
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426 } |
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427 catch (boost::bad_lexical_cast&) |
433 | 428 { |
429 } | |
430 } | |
431 | |
432 | |
1237 | 433 |
434 | |
1238 | 435 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 436 int64_t id, |
437 MetadataType type) | |
438 { | |
1238 | 439 std::string s; |
1247 | 440 if (!db_.LookupMetadata(s, id, type)) |
1237 | 441 { |
442 return false; | |
443 } | |
444 | |
445 try | |
446 { | |
1238 | 447 result = boost::lexical_cast<int64_t>(s); |
1237 | 448 return true; |
449 } | |
450 catch (boost::bad_lexical_cast&) | |
451 { | |
452 return false; | |
453 } | |
454 } | |
455 | |
456 | |
1297 | 457 void ServerIndex::LogChange(int64_t internalId, |
458 ChangeType changeType, | |
459 ResourceType resourceType, | |
460 const std::string& publicId) | |
461 { | |
462 ServerIndexChange change(changeType, resourceType, publicId); | |
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463 |
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464 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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465 { |
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466 db_.LogChange(internalId, change); |
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467 } |
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468 |
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469 assert(listener_.get() != NULL); |
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470 listener_->SignalChange(change); |
1297 | 471 } |
472 | |
1237 | 473 |
474 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
475 { | |
476 std::string oldValue; | |
477 | |
1247 | 478 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 479 { |
480 uint64_t oldNumber; | |
481 | |
482 try | |
483 { | |
484 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 485 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 486 return oldNumber + 1; |
487 } | |
488 catch (boost::bad_lexical_cast&) | |
489 { | |
490 throw OrthancException(ErrorCode_InternalError); | |
491 } | |
492 } | |
493 else | |
494 { | |
495 // Initialize the sequence at "1" | |
1247 | 496 db_.SetGlobalProperty(property, "1"); |
1237 | 497 return 1; |
498 } | |
499 } | |
500 | |
501 | |
502 | |
1299 | 503 int64_t ServerIndex::CreateResource(const std::string& publicId, |
504 ResourceType type) | |
505 { | |
506 int64_t id = db_.CreateResource(publicId, type); | |
507 | |
508 ChangeType changeType; | |
509 switch (type) | |
510 { | |
511 case ResourceType_Patient: | |
512 changeType = ChangeType_NewPatient; | |
513 break; | |
514 | |
515 case ResourceType_Study: | |
516 changeType = ChangeType_NewStudy; | |
517 break; | |
518 | |
519 case ResourceType_Series: | |
520 changeType = ChangeType_NewSeries; | |
521 break; | |
522 | |
523 case ResourceType_Instance: | |
524 changeType = ChangeType_NewInstance; | |
525 break; | |
526 | |
527 default: | |
528 throw OrthancException(ErrorCode_InternalError); | |
529 } | |
530 | |
531 ServerIndexChange change(changeType, type, publicId); | |
532 db_.LogChange(id, change); | |
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533 |
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534 assert(listener_.get() != NULL); |
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535 listener_->SignalChange(change); |
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536 |
1299 | 537 return id; |
538 } | |
539 | |
1286 | 540 |
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541 ServerIndex::ServerIndex(ServerContext& context, |
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542 IDatabaseWrapper& db, |
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543 unsigned int threadSleep) : |
511
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544 done_(false), |
1247 | 545 db_(db), |
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546 maximumStorageSize_(0), |
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547 maximumPatients_(0) |
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548 { |
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549 listener_.reset(new Listener(context)); |
1247 | 550 db_.SetListener(*listener_); |
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551 |
1247 | 552 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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553 |
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554 // Initial recycling if the parameters have changed since the last |
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555 // execution of Orthanc |
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556 StandaloneRecycling(); |
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557 |
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558 if (db.HasFlushToDisk()) |
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559 { |
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560 flushThread_ = boost::thread(FlushThread, this, threadSleep); |
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561 } |
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562 |
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563 unstableResourcesMonitorThread_ = boost::thread |
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564 (UnstableResourcesMonitorThread, this, threadSleep); |
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565 } |
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566 |
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567 |
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568 |
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569 ServerIndex::~ServerIndex() |
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570 { |
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571 if (!done_) |
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572 { |
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573 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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574 Stop(); |
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575 } |
0 | 576 } |
577 | |
578 | |
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579 |
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580 void ServerIndex::Stop() |
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581 { |
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582 if (!done_) |
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583 { |
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584 done_ = true; |
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585 |
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586 if (db_.HasFlushToDisk() && |
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587 flushThread_.joinable()) |
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588 { |
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589 flushThread_.join(); |
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590 } |
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591 |
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592 if (unstableResourcesMonitorThread_.joinable()) |
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593 { |
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594 unstableResourcesMonitorThread_.join(); |
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595 } |
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596 } |
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597 } |
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598 |
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599 |
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600 |
2188 | 601 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
602 int64_t instance, | |
603 MetadataType metadata, | |
604 const std::string& value) | |
605 { | |
606 db_.SetMetadata(instance, metadata, value); | |
607 instanceMetadata[metadata] = value; | |
608 } | |
609 | |
610 | |
611 | |
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612 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 613 DicomInstanceToStore& instanceToStore, |
614 const Attachments& attachments) | |
0 | 615 { |
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616 boost::mutex::scoped_lock lock(mutex_); |
0 | 617 |
1822 | 618 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
619 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
620 | |
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621 instanceMetadata.clear(); |
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622 |
1822 | 623 DicomInstanceHasher hasher(instanceToStore.GetSummary()); |
0 | 624 |
625 try | |
626 { | |
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627 Transaction t(*this); |
0 | 628 |
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629 // Check whether this instance is already stored |
0 | 630 { |
432 | 631 ResourceType type; |
632 int64_t tmp; | |
1294 | 633 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
432 | 634 { |
635 assert(type == ResourceType_Instance); | |
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636 |
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637 if (overwrite_) |
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638 { |
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639 // Overwrite the old instance |
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640 LOG(INFO) << "Overwriting instance: " << hasher.HashInstance(); |
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641 db_.DeleteResource(tmp); |
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642 } |
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643 else |
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644 { |
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645 // Do nothing if the instance already exists |
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646 db_.GetAllMetadata(instanceMetadata, tmp); |
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647 return StoreStatus_AlreadyStored; |
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648 } |
432 | 649 } |
0 | 650 } |
651 | |
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652 // Ensure there is enough room in the storage for the new instance |
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653 uint64_t instanceSize = 0; |
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654 for (Attachments::const_iterator it = attachments.begin(); |
656 | 655 it != attachments.end(); ++it) |
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656 { |
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657 instanceSize += it->GetCompressedSize(); |
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658 } |
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659 |
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660 Recycle(instanceSize, hasher.HashPatient()); |
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661 |
202 | 662 // Create the instance |
1299 | 663 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
2120 | 664 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 665 |
432 | 666 // Detect up to which level the patient/study/series/instance |
667 // hierarchy must be created | |
668 int64_t patient = -1, study = -1, series = -1; | |
669 bool isNewPatient = false; | |
670 bool isNewStudy = false; | |
671 bool isNewSeries = false; | |
672 | |
0 | 673 { |
432 | 674 ResourceType dummy; |
675 | |
1294 | 676 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
432 | 677 { |
678 assert(dummy == ResourceType_Series); | |
679 // The patient, the study and the series already exist | |
680 | |
1294 | 681 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
682 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
432 | 683 assert(ok); |
684 } | |
1294 | 685 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
432 | 686 { |
687 assert(dummy == ResourceType_Study); | |
688 | |
689 // New series: The patient and the study already exist | |
690 isNewSeries = true; | |
691 | |
1294 | 692 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
432 | 693 assert(ok); |
694 } | |
1294 | 695 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
432 | 696 { |
697 assert(dummy == ResourceType_Patient); | |
698 | |
699 // New study and series: The patient already exist | |
700 isNewStudy = true; | |
701 isNewSeries = true; | |
702 } | |
703 else | |
704 { | |
705 // New patient, study and series: Nothing exists | |
706 isNewPatient = true; | |
707 isNewStudy = true; | |
708 isNewSeries = true; | |
709 } | |
710 } | |
711 | |
712 // Create the series if needed | |
713 if (isNewSeries) | |
714 { | |
1299 | 715 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
2120 | 716 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 717 } |
202 | 718 |
432 | 719 // Create the study if needed |
720 if (isNewStudy) | |
721 { | |
1299 | 722 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
2120 | 723 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 724 } |
725 | |
726 // Create the patient if needed | |
727 if (isNewPatient) | |
728 { | |
1299 | 729 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
2120 | 730 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 731 } |
202 | 732 |
432 | 733 // Create the parent-to-child links |
1247 | 734 db_.AttachChild(series, instance); |
432 | 735 |
736 if (isNewSeries) | |
737 { | |
1247 | 738 db_.AttachChild(study, series); |
0 | 739 } |
432 | 740 |
741 if (isNewStudy) | |
0 | 742 { |
1247 | 743 db_.AttachChild(patient, study); |
0 | 744 } |
745 | |
432 | 746 // Sanity checks |
747 assert(patient != -1); | |
748 assert(study != -1); | |
749 assert(series != -1); | |
750 assert(instance != -1); | |
751 | |
202 | 752 // Attach the files to the newly created instance |
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753 for (Attachments::const_iterator it = attachments.begin(); |
656 | 754 it != attachments.end(); ++it) |
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755 { |
1247 | 756 db_.AddAttachment(instance, *it); |
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757 } |
202 | 758 |
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759 // Attach the user-specified metadata |
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760 for (MetadataMap::const_iterator |
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proper handling of metadata in Store
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|
761 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
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|
762 { |
1006
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proper handling of metadata in Store
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diff
changeset
|
763 switch (it->first.first) |
1002
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anonymization refactoring
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diff
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|
764 { |
1006
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proper handling of metadata in Store
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parents:
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diff
changeset
|
765 case ResourceType_Patient: |
1247 | 766 db_.SetMetadata(patient, it->first.second, it->second); |
1006
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proper handling of metadata in Store
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parents:
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diff
changeset
|
767 break; |
1002
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anonymization refactoring
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parents:
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changeset
|
768 |
1006
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proper handling of metadata in Store
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diff
changeset
|
769 case ResourceType_Study: |
1247 | 770 db_.SetMetadata(study, it->first.second, it->second); |
1006
649d47854314
proper handling of metadata in Store
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diff
changeset
|
771 break; |
1002
b067017a8a5b
anonymization refactoring
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parents:
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diff
changeset
|
772 |
1006
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proper handling of metadata in Store
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diff
changeset
|
773 case ResourceType_Series: |
1247 | 774 db_.SetMetadata(series, it->first.second, it->second); |
1006
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proper handling of metadata in Store
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diff
changeset
|
775 break; |
1002
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diff
changeset
|
776 |
1006
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proper handling of metadata in Store
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777 case ResourceType_Instance: |
2188 | 778 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
1006
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proper handling of metadata in Store
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parents:
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diff
changeset
|
779 break; |
1002
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anonymization refactoring
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diff
changeset
|
780 |
1006
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proper handling of metadata in Store
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parents:
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diff
changeset
|
781 default: |
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proper handling of metadata in Store
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
782 throw OrthancException(ErrorCode_ParameterOutOfRange); |
1002
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anonymization refactoring
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parents:
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diff
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|
783 } |
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|
784 } |
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diff
changeset
|
785 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
786 // Attach the auto-computed metadata for the patient/study/series levels |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
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parents:
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diff
changeset
|
787 std::string now = SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */); |
1247 | 788 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
789 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
790 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
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DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
791 |
a226e0959d8b
DicomInstanceToStore
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parents:
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diff
changeset
|
792 // Attach the auto-computed metadata for the instance level, |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
793 // reflecting these additions into the input metadata map |
2188 | 794 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
2640
c691fcf66071
ResourceModificationJob
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parents:
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diff
changeset
|
795 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, |
2664
a21b244efb37
serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
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parents:
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diff
changeset
|
796 instanceToStore.GetOrigin().GetRemoteAetC()); |
2189
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New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
2188
diff
changeset
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797 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
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diff
changeset
|
798 EnumerationToString(instanceToStore.GetOrigin().GetRequestOrigin())); |
2726
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diff
changeset
|
799 |
1823
0ef4e6e66b56
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diff
changeset
|
800 { |
2189
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New metadata automatically computed at the instance level: "TransferSyntax"
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diff
changeset
|
801 std::string s; |
2726
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parents:
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diff
changeset
|
802 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
2188
diff
changeset
|
803 if (instanceToStore.LookupTransferSyntax(s)) |
c4b3259c8bce
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parents:
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diff
changeset
|
804 { |
2726
46061a91c88a
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parents:
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diff
changeset
|
805 // New in Orthanc 1.2.0 |
2189
c4b3259c8bce
New metadata automatically computed at the instance level: "TransferSyntax"
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parents:
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diff
changeset
|
806 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
c4b3259c8bce
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diff
changeset
|
807 } |
2726
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
808 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
809 if (instanceToStore.GetOrigin().LookupRemoteIp(s)) |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
810 { |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
811 // New in Orthanc 1.4.0 |
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parents:
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diff
changeset
|
812 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteIp, s); |
46061a91c88a
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
813 } |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
814 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
815 if (instanceToStore.GetOrigin().LookupCalledAet(s)) |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
816 { |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
817 // New in Orthanc 1.4.0 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
818 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_CalledAet, s); |
46061a91c88a
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diff
changeset
|
819 } |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
820 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
821 if (instanceToStore.GetOrigin().LookupHttpUsername(s)) |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
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|
822 { |
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new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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parents:
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diff
changeset
|
823 // New in Orthanc 1.4.0 |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
824 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_HttpUsername, s); |
46061a91c88a
new metadata (RemoteIP, CalledAET, HttpUsername), "?expand" metadata
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diff
changeset
|
825 } |
1823
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"Origin" metadata for the instances
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parents:
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diff
changeset
|
826 } |
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"Origin" metadata for the instances
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diff
changeset
|
827 |
202 | 828 const DicomValue* value; |
2208
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
829 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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parents:
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diff
changeset
|
830 !value->IsNull() && |
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New metadata automatically computed at the instance level: "SopClassUid"
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parents:
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diff
changeset
|
831 !value->IsBinary()) |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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parents:
2189
diff
changeset
|
832 { |
90ea60bee5ff
New metadata automatically computed at the instance level: "SopClassUid"
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parents:
2189
diff
changeset
|
833 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
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diff
changeset
|
834 } |
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New metadata automatically computed at the instance level: "SopClassUid"
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diff
changeset
|
835 |
202 | 836 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
837 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 838 { |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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parents:
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diff
changeset
|
839 if (!value->IsNull() && |
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removal of DicomStringValue and DicomNullValue
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parents:
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diff
changeset
|
840 !value->IsBinary()) |
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removal of DicomStringValue and DicomNullValue
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parents:
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diff
changeset
|
841 { |
2188 | 842 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
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parents:
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diff
changeset
|
843 } |
0 | 844 } |
845 | |
1004
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
846 // Check whether the series of this new instance is now completed |
202 | 847 if (isNewSeries) |
848 { | |
1247 | 849 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 850 } |
851 | |
205
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logging of completed series
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parents:
204
diff
changeset
|
852 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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logging of completed series
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diff
changeset
|
853 if (seriesStatus == SeriesStatus_Complete) |
6ab754744446
logging of completed series
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204
diff
changeset
|
854 { |
1237 | 855 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
205
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logging of completed series
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diff
changeset
|
856 } |
6ab754744446
logging of completed series
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parents:
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diff
changeset
|
857 |
511
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
858 // Mark the parent resources of this instance as unstable |
1177
5b2d8c280ac2
Plugins can monitor changes through callbacks
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parents:
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diff
changeset
|
859 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
5b2d8c280ac2
Plugins can monitor changes through callbacks
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parents:
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diff
changeset
|
860 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
5b2d8c280ac2
Plugins can monitor changes through callbacks
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diff
changeset
|
861 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
511
3b735fdf320b
monitoring of stable patients/studies/series
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diff
changeset
|
862 |
278
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273
diff
changeset
|
863 t.Commit(instanceSize); |
268
4bc02e2254ec
preparing ServerIndex for recycling
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parents:
264
diff
changeset
|
864 |
0 | 865 return StoreStatus_Success; |
866 } | |
62 | 867 catch (OrthancException& e) |
0 | 868 { |
1247 | 869 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 870 } |
871 | |
872 return StoreStatus_Failure; | |
873 } | |
874 | |
875 | |
238 | 876 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 877 { |
206
4453a010d0db
flush to disk thread
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parents:
205
diff
changeset
|
878 boost::mutex::scoped_lock lock(mutex_); |
238 | 879 target = Json::objectValue; |
0 | 880 |
278
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diff
changeset
|
881 uint64_t cs = currentStorageSize_; |
1247 | 882 assert(cs == db_.GetTotalCompressedSize()); |
883 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
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parents:
438
diff
changeset
|
884 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 885 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
61ce8147f30d
custom database back-end
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1306
diff
changeset
|
886 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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custom database back-end
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diff
changeset
|
887 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 888 |
1247 | 889 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
890 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
891 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
892 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 893 } |
894 | |
187
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refactoring of storing new instances
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diff
changeset
|
895 |
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changeset
|
896 |
585 | 897 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 898 { |
899 // Get the expected number of instances in this series (from the metadata) | |
1238 | 900 int64_t expected; |
901 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 902 { |
903 return SeriesStatus_Unknown; | |
904 } | |
905 | |
906 // Loop over the instances of this series | |
907 std::list<int64_t> children; | |
1247 | 908 db_.GetChildrenInternalId(children, id); |
199 | 909 |
1238 | 910 std::set<int64_t> instances; |
199 | 911 for (std::list<int64_t>::const_iterator |
656 | 912 it = children.begin(); it != children.end(); ++it) |
199 | 913 { |
914 // Get the index of this instance in the series | |
1238 | 915 int64_t index; |
916 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 917 { |
918 return SeriesStatus_Unknown; | |
919 } | |
920 | |
656 | 921 if (!(index > 0 && index <= expected)) |
199 | 922 { |
923 // Out-of-range instance index | |
924 return SeriesStatus_Inconsistent; | |
925 } | |
926 | |
927 if (instances.find(index) != instances.end()) | |
928 { | |
929 // Twice the same instance index | |
930 return SeriesStatus_Inconsistent; | |
931 } | |
932 | |
933 instances.insert(index); | |
934 } | |
935 | |
1238 | 936 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 937 { |
938 return SeriesStatus_Complete; | |
939 } | |
940 else | |
941 { | |
942 return SeriesStatus_Missing; | |
943 } | |
944 } | |
945 | |
946 | |
202 | 947 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
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|
948 int64_t resourceId, |
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|
949 ResourceType resourceType) |
198
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950 { |
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951 DicomMap tags; |
1247 | 952 db_.GetMainDicomTags(tags, resourceId); |
1676
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|
953 |
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|
954 if (resourceType == ResourceType_Study) |
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|
955 { |
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diff
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|
956 DicomMap t1, t2; |
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|
957 tags.ExtractStudyInformation(t1); |
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|
958 tags.ExtractPatientInformation(t2); |
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|
959 |
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960 target["MainDicomTags"] = Json::objectValue; |
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|
961 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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|
962 |
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|
963 target["PatientMainDicomTags"] = Json::objectValue; |
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|
964 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
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|
965 } |
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|
966 else |
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|
967 { |
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|
968 target["MainDicomTags"] = Json::objectValue; |
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|
969 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
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|
970 } |
198
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971 } |
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972 |
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973 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 974 const std::string& publicId, |
975 ResourceType expectedType) | |
198
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976 { |
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977 result = Json::objectValue; |
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978 |
206
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979 boost::mutex::scoped_lock lock(mutex_); |
199 | 980 |
198
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981 // Lookup for the requested resource |
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982 int64_t id; |
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983 ResourceType type; |
1294 | 984 if (!db_.LookupResource(id, type, publicId) || |
199 | 985 type != expectedType) |
198
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986 { |
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987 return false; |
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988 } |
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989 |
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990 // Find the parent resource (if it exists) |
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991 if (type != ResourceType_Patient) |
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992 { |
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|
993 int64_t parentId; |
1247 | 994 if (!db_.LookupParent(parentId, id)) |
198
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|
995 { |
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|
996 throw OrthancException(ErrorCode_InternalError); |
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997 } |
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998 |
1247 | 999 std::string parent = db_.GetPublicId(parentId); |
198
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1000 |
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|
1001 switch (type) |
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1002 { |
269
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|
1003 case ResourceType_Study: |
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1004 result["ParentPatient"] = parent; |
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1005 break; |
198
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|
1006 |
269
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|
1007 case ResourceType_Series: |
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|
1008 result["ParentStudy"] = parent; |
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|
1009 break; |
198
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|
1010 |
269
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|
1011 case ResourceType_Instance: |
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1012 result["ParentSeries"] = parent; |
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|
1013 break; |
198
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1014 |
269
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|
1015 default: |
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|
1016 throw OrthancException(ErrorCode_InternalError); |
198
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|
1017 } |
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1018 } |
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1019 |
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1020 // List the children resources |
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|
1021 std::list<std::string> children; |
1247 | 1022 db_.GetChildrenPublicId(children, id); |
198
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|
1023 |
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|
1024 if (type != ResourceType_Instance) |
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1025 { |
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|
1026 Json::Value c = Json::arrayValue; |
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|
1027 |
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|
1028 for (std::list<std::string>::const_iterator |
656 | 1029 it = children.begin(); it != children.end(); ++it) |
198
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1030 { |
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|
1031 c.append(*it); |
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1032 } |
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|
1033 |
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|
1034 switch (type) |
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|
1035 { |
269
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|
1036 case ResourceType_Patient: |
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|
1037 result["Studies"] = c; |
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|
1038 break; |
198
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|
1039 |
269
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|
1040 case ResourceType_Study: |
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|
1041 result["Series"] = c; |
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|
1042 break; |
198
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|
1043 |
269
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|
1044 case ResourceType_Series: |
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|
1045 result["Instances"] = c; |
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|
1046 break; |
198
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|
1047 |
269
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|
1048 default: |
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|
1049 throw OrthancException(ErrorCode_InternalError); |
198
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1050 } |
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1051 } |
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1052 |
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1053 // Set the resource type |
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1054 switch (type) |
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|
1055 { |
269
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|
1056 case ResourceType_Patient: |
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|
1057 result["Type"] = "Patient"; |
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|
1058 break; |
198
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changeset
|
1059 |
269
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changeset
|
1060 case ResourceType_Study: |
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|
1061 result["Type"] = "Study"; |
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|
1062 break; |
199 | 1063 |
269
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|
1064 case ResourceType_Series: |
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|
1065 { |
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|
1066 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
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diff
changeset
|
1067 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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1068 |
1238 | 1069 int64_t i; |
1237 | 1070 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1071 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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|
1072 else |
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changeset
|
1073 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
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diff
changeset
|
1074 |
269
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changeset
|
1075 break; |
200
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1076 } |
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1077 |
269
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1078 case ResourceType_Instance: |
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1079 { |
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1080 result["Type"] = "Instance"; |
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1081 |
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1082 FileInfo attachment; |
1247 | 1083 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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1084 { |
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1085 throw OrthancException(ErrorCode_InternalError); |
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1086 } |
200
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1087 |
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1088 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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1089 result["FileUuid"] = attachment.GetUuid(); |
200
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|
1090 |
1238 | 1091 int64_t i; |
1237 | 1092 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1093 result["IndexInSeries"] = static_cast<int>(i); |
269
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1094 else |
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1095 result["IndexInSeries"] = Json::nullValue; |
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1096 |
269
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1097 break; |
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1098 } |
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1099 |
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1100 default: |
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1101 throw OrthancException(ErrorCode_InternalError); |
198
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1102 } |
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1103 |
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1104 // Record the remaining information |
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1105 result["ID"] = publicId; |
1668
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diff
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|
1106 MainDicomTagsToJson(result, id, type); |
198
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1107 |
315 | 1108 std::string tmp; |
1109 | |
1247 | 1110 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1111 { |
315 | 1112 result["AnonymizedFrom"] = tmp; |
1236 | 1113 } |
315 | 1114 |
1247 | 1115 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1116 { |
315 | 1117 result["ModifiedFrom"] = tmp; |
1236 | 1118 } |
315 | 1119 |
511
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|
1120 if (type == ResourceType_Patient || |
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1121 type == ResourceType_Study || |
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|
1122 type == ResourceType_Series) |
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|
1123 { |
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diff
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|
1124 result["IsStable"] = !unstableResources_.Contains(id); |
1148
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1125 |
1247 | 1126 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1127 { |
1148
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diff
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|
1128 result["LastUpdate"] = tmp; |
1236 | 1129 } |
511
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1130 } |
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1131 |
198
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1132 return true; |
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1133 } |
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1134 |
0 | 1135 |
232
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1136 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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|
1137 const std::string& instanceUuid, |
233 | 1138 FileContentType contentType) |
0 | 1139 { |
206
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1140 boost::mutex::scoped_lock lock(mutex_); |
0 | 1141 |
193
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1142 int64_t id; |
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|
1143 ResourceType type; |
1294 | 1144 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1145 { |
1113
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Refactoring of HttpOutput ("Content-Length" header is now always sent)
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diff
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|
1146 throw OrthancException(ErrorCode_UnknownResource); |
192
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|
1147 } |
193
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1148 |
1247 | 1149 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1150 { |
233 | 1151 assert(attachment.GetContentType() == contentType); |
232
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|
1152 return true; |
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|
1153 } |
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|
1154 else |
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|
1155 { |
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|
1156 return false; |
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|
1157 } |
192
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|
1158 } |
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|
1159 |
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|
1160 |
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diff
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|
1161 |
1354 | 1162 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1163 ResourceType resourceType) |
0 | 1164 { |
1357 | 1165 boost::mutex::scoped_lock lock(mutex_); |
1166 db_.GetAllPublicIds(target, resourceType); | |
0 | 1167 } |
1168 | |
1169 | |
1509
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diff
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|
1170 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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|
1171 ResourceType resourceType, |
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|
1172 size_t since, |
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|
1173 size_t limit) |
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1174 { |
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|
1175 if (limit == 0) |
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1176 { |
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|
1177 target.clear(); |
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1178 return; |
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1179 } |
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|
1180 |
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|
1181 boost::mutex::scoped_lock lock(mutex_); |
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|
1182 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1183 } |
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1184 |
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1185 |
1244 | 1186 template <typename T> |
1187 static void FormatLog(Json::Value& target, | |
1188 const std::list<T>& log, | |
1189 const std::string& name, | |
1190 bool done, | |
1191 int64_t since) | |
1240 | 1192 { |
1193 Json::Value items = Json::arrayValue; | |
1244 | 1194 for (typename std::list<T>::const_iterator |
1304 | 1195 it = log.begin(); it != log.end(); ++it) |
1240 | 1196 { |
1197 Json::Value item; | |
1198 it->Format(item); | |
1199 items.append(item); | |
1200 } | |
1201 | |
1202 target = Json::objectValue; | |
1244 | 1203 target[name] = items; |
1240 | 1204 target["Done"] = done; |
1205 | |
1305 | 1206 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1207 target["Last"] = static_cast<int>(last); |
1208 } | |
1209 | |
1210 | |
1247 | 1211 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1212 int64_t since, |
0 | 1213 unsigned int maxResults) |
1214 { | |
1240 | 1215 std::list<ServerIndexChange> changes; |
1216 bool done; | |
1217 | |
1218 { | |
1219 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1220 |
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1221 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1222 // "GetLastChange()" involves calls to "GetPublicId()" |
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|
1223 Transaction transaction(*this); |
1247 | 1224 db_.GetChanges(changes, done, since, maxResults); |
2717
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|
1225 transaction.Commit(0); |
1240 | 1226 } |
1227 | |
1244 | 1228 FormatLog(target, changes, "Changes", done, since); |
237
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1229 } |
0 | 1230 |
1240 | 1231 |
1247 | 1232 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1233 { |
1240 | 1234 std::list<ServerIndexChange> changes; |
1235 | |
1236 { | |
1237 boost::mutex::scoped_lock lock(mutex_); | |
2717
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1238 |
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1239 // Fix wrt. Orthanc <= 1.3.2: A transaction was missing, as |
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1240 // "GetLastChange()" involves calls to "GetPublicId()" |
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1241 Transaction transaction(*this); |
1247 | 1242 db_.GetLastChange(changes); |
2717
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1243 transaction.Commit(0); |
1240 | 1244 } |
1245 | |
1244 | 1246 FormatLog(target, changes, "Changes", true, 0); |
0 | 1247 } |
231 | 1248 |
1240 | 1249 |
231 | 1250 void ServerIndex::LogExportedResource(const std::string& publicId, |
1251 const std::string& remoteModality) | |
1252 { | |
1253 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1254 Transaction transaction(*this); |
231 | 1255 |
1256 int64_t id; | |
1257 ResourceType type; | |
1294 | 1258 if (!db_.LookupResource(id, type, publicId)) |
231 | 1259 { |
2573
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StoreScuJob, Orthanc Explorer for jobs
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|
1260 throw OrthancException(ErrorCode_InexistentItem); |
231 | 1261 } |
1262 | |
1263 std::string patientId; | |
1264 std::string studyInstanceUid; | |
1265 std::string seriesInstanceUid; | |
1266 std::string sopInstanceUid; | |
1267 | |
1268 int64_t currentId = id; | |
1269 ResourceType currentType = type; | |
1270 | |
1271 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1272 bool done = false; | |
1273 while (!done) | |
1274 { | |
1275 DicomMap map; | |
1247 | 1276 db_.GetMainDicomTags(map, currentId); |
231 | 1277 |
1278 switch (currentType) | |
1279 { | |
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1280 case ResourceType_Patient: |
2090
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diff
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|
1281 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1282 { |
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|
1283 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1284 } |
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1285 done = true; |
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1286 break; |
231 | 1287 |
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1288 case ResourceType_Study: |
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1289 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1290 { |
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1291 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1292 } |
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1293 currentType = ResourceType_Patient; |
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1294 break; |
231 | 1295 |
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1296 case ResourceType_Series: |
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1297 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1298 { |
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1299 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1300 } |
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1301 currentType = ResourceType_Study; |
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1302 break; |
231 | 1303 |
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1304 case ResourceType_Instance: |
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1305 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1306 { |
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1307 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1308 } |
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1309 currentType = ResourceType_Series; |
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1310 break; |
231 | 1311 |
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1312 default: |
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1313 throw OrthancException(ErrorCode_InternalError); |
231 | 1314 } |
1315 | |
1316 // If we have not reached the Patient level, find the parent of | |
1317 // the current resource | |
1318 if (!done) | |
1319 { | |
1247 | 1320 bool ok = db_.LookupParent(currentId, currentId); |
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1321 assert(ok); |
231 | 1322 } |
1323 } | |
1324 | |
1246 | 1325 ExportedResource resource(-1, |
1326 type, | |
1327 publicId, | |
1328 remoteModality, | |
2475
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1329 SystemToolbox::GetNowIsoString(true /* use UTC time (not local time) */), |
1246 | 1330 patientId, |
1331 studyInstanceUid, | |
1332 seriesInstanceUid, | |
1333 sopInstanceUid); | |
1310
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1334 |
1247 | 1335 db_.LogExportedResource(resource); |
1310
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1336 transaction.Commit(0); |
231 | 1337 } |
1338 | |
1339 | |
1247 | 1340 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1341 int64_t since, |
1342 unsigned int maxResults) | |
1343 { | |
1244 | 1344 std::list<ExportedResource> exported; |
1345 bool done; | |
1346 | |
1347 { | |
1348 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1349 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1350 } |
1351 | |
1352 FormatLog(target, exported, "Exports", done, since); | |
231 | 1353 } |
237
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1354 |
1244 | 1355 |
1247 | 1356 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1357 { |
1244 | 1358 std::list<ExportedResource> exported; |
1359 | |
1360 { | |
1361 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1362 db_.GetLastExportedResource(exported); |
1244 | 1363 } |
1364 | |
1365 FormatLog(target, exported, "Exports", true, 0); | |
237
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1366 } |
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1367 |
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1368 |
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1369 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1370 { |
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1371 if (maximumStorageSize_ != 0) |
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1372 { |
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1373 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1374 assert(db_.GetTotalCompressedSize() == currentSize); |
278
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1375 |
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1376 if (currentSize + instanceSize > maximumStorageSize_) |
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1377 { |
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1378 return true; |
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1379 } |
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1380 } |
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1381 |
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1382 if (maximumPatients_ != 0) |
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1383 { |
1247 | 1384 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1385 if (patientCount > maximumPatients_) |
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1386 { |
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1387 return true; |
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1388 } |
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1389 } |
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1390 |
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1391 return false; |
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1392 } |
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1393 |
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1394 |
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1395 void ServerIndex::Recycle(uint64_t instanceSize, |
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1396 const std::string& newPatientId) |
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1397 { |
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1398 if (!IsRecyclingNeeded(instanceSize)) |
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1399 { |
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1400 return; |
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1401 } |
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1402 |
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1403 // Check whether other DICOM instances from this patient are |
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1404 // already stored |
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1405 int64_t patientToAvoid; |
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1406 ResourceType type; |
1294 | 1407 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1408 |
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1409 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1410 { |
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1411 throw OrthancException(ErrorCode_InternalError); |
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1412 } |
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1413 |
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1414 // Iteratively select patient to remove until there is enough |
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1415 // space in the DICOM store |
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1416 int64_t patientToRecycle; |
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1417 while (true) |
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1418 { |
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1419 // If other instances of this patient are already in the store, |
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1420 // we must avoid to recycle them |
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1421 bool ok = hasPatientToAvoid ? |
1247 | 1422 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1423 db_.SelectPatientToRecycle(patientToRecycle); | |
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1424 |
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1425 if (!ok) |
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1426 { |
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1427 throw OrthancException(ErrorCode_FullStorage); |
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1428 } |
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1429 |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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1430 VLOG(1) << "Recycling one patient"; |
1247 | 1431 db_.DeleteResource(patientToRecycle); |
269
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1432 |
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1433 if (!IsRecyclingNeeded(instanceSize)) |
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1434 { |
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1435 // OK, we're done |
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1436 break; |
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1437 } |
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1438 } |
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1439 } |
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1440 |
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1441 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1442 { |
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1443 boost::mutex::scoped_lock lock(mutex_); |
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1444 maximumPatients_ = count; |
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1445 |
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1446 if (count == 0) |
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1447 { |
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1448 LOG(WARNING) << "No limit on the number of stored patients"; |
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1449 } |
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1450 else |
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1451 { |
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1452 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1453 } |
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1454 |
269
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1455 StandaloneRecycling(); |
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1456 } |
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1457 |
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1458 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1459 { |
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1460 boost::mutex::scoped_lock lock(mutex_); |
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1461 maximumStorageSize_ = size; |
270
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1462 |
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1463 if (size == 0) |
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1464 { |
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1465 LOG(WARNING) << "No limit on the size of the storage area"; |
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1466 } |
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1467 else |
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1468 { |
440
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diff
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|
1469 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1470 } |
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1471 |
269
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1472 StandaloneRecycling(); |
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1473 } |
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1474 |
2825
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|
1475 void ServerIndex::SetOverwriteInstances(bool overwrite) |
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|
1476 { |
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|
1477 boost::mutex::scoped_lock lock(mutex_); |
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|
1478 overwrite_ = overwrite; |
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|
1479 } |
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|
1480 |
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1481 |
272
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1482 void ServerIndex::StandaloneRecycling() |
269
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1483 { |
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1484 // WARNING: No mutex here, do not include this as a public method |
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1485 Transaction t(*this); |
269
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1486 Recycle(0, ""); |
278
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1487 t.Commit(0); |
269
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1488 } |
272
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1489 |
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1490 |
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1491 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1492 { |
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1493 boost::mutex::scoped_lock lock(mutex_); |
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1494 |
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1495 // Lookup for the requested resource |
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1496 int64_t id; |
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1497 ResourceType type; |
1294 | 1498 if (!db_.LookupResource(id, type, publicId) || |
272
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1499 type != ResourceType_Patient) |
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1500 { |
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1501 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1502 } |
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1503 |
1247 | 1504 return db_.IsProtectedPatient(id); |
272
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1505 } |
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1506 |
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1507 |
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1508 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1509 bool isProtected) |
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1510 { |
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1511 boost::mutex::scoped_lock lock(mutex_); |
1310
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1512 Transaction transaction(*this); |
272
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1513 |
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1514 // Lookup for the requested resource |
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1515 int64_t id; |
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1516 ResourceType type; |
1294 | 1517 if (!db_.LookupResource(id, type, publicId) || |
272
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1518 type != ResourceType_Patient) |
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1519 { |
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1520 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1521 } |
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1522 |
1247 | 1523 db_.SetProtectedPatient(id, isProtected); |
1310
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1524 transaction.Commit(0); |
272
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1525 |
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1526 if (isProtected) |
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1527 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1528 else |
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1529 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1530 } |
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1531 |
304 | 1532 |
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1533 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1534 const std::string& publicId) |
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1535 { |
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1536 result.clear(); |
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1537 |
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1538 boost::mutex::scoped_lock lock(mutex_); |
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1539 |
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1540 ResourceType type; |
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1541 int64_t resource; |
1294 | 1542 if (!db_.LookupResource(resource, type, publicId)) |
714
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1543 { |
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1544 throw OrthancException(ErrorCode_UnknownResource); |
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1545 } |
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1546 |
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1547 if (type == ResourceType_Instance) |
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1548 { |
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1549 // An instance cannot have a child |
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1550 throw OrthancException(ErrorCode_BadParameterType); |
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1551 } |
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1552 |
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1553 std::list<int64_t> tmp; |
1247 | 1554 db_.GetChildrenInternalId(tmp, resource); |
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1555 |
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1556 for (std::list<int64_t>::const_iterator |
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1557 it = tmp.begin(); it != tmp.end(); ++it) |
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1558 { |
1247 | 1559 result.push_back(db_.GetPublicId(*it)); |
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1560 } |
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1561 } |
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1562 |
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1563 |
304 | 1564 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1565 const std::string& publicId) | |
1566 { | |
1567 result.clear(); | |
1568 | |
1569 boost::mutex::scoped_lock lock(mutex_); | |
1570 | |
1571 ResourceType type; | |
1572 int64_t top; | |
1294 | 1573 if (!db_.LookupResource(top, type, publicId)) |
304 | 1574 { |
1575 throw OrthancException(ErrorCode_UnknownResource); | |
1576 } | |
1577 | |
1578 if (type == ResourceType_Instance) | |
1579 { | |
1580 // The resource is already an instance: Do not go down the hierarchy | |
1581 result.push_back(publicId); | |
1582 return; | |
1583 } | |
1584 | |
1585 std::stack<int64_t> toExplore; | |
1586 toExplore.push(top); | |
1587 | |
1588 std::list<int64_t> tmp; | |
1589 | |
1590 while (!toExplore.empty()) | |
1591 { | |
1592 // Get the internal ID of the current resource | |
1593 int64_t resource = toExplore.top(); | |
1594 toExplore.pop(); | |
1595 | |
1247 | 1596 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1597 { |
1247 | 1598 result.push_back(db_.GetPublicId(resource)); |
304 | 1599 } |
1600 else | |
1601 { | |
1602 // Tag all the children of this resource as to be explored | |
1247 | 1603 db_.GetChildrenInternalId(tmp, resource); |
304 | 1604 for (std::list<int64_t>::const_iterator |
656 | 1605 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1606 { |
1607 toExplore.push(*it); | |
1608 } | |
1609 } | |
1610 } | |
1611 } | |
1612 | |
306
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1613 |
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1614 void ServerIndex::SetMetadata(const std::string& publicId, |
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1615 MetadataType type, |
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1616 const std::string& value) |
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1617 { |
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1618 boost::mutex::scoped_lock lock(mutex_); |
1773
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1619 Transaction t(*this); |
306
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1620 |
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1621 ResourceType rtype; |
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1622 int64_t id; |
1294 | 1623 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1624 { |
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1625 throw OrthancException(ErrorCode_UnknownResource); |
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1626 } |
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1627 |
1247 | 1628 db_.SetMetadata(id, type, value); |
1773
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1629 |
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1630 if (IsUserMetadata(type)) |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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|
1631 { |
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1632 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1633 } |
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1634 |
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1635 t.Commit(0); |
306
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1636 } |
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1637 |
438 | 1638 |
1639 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1640 MetadataType type) | |
1641 { | |
1642 boost::mutex::scoped_lock lock(mutex_); | |
1773
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|
1643 Transaction t(*this); |
438 | 1644 |
1645 ResourceType rtype; | |
1646 int64_t id; | |
1294 | 1647 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1648 { |
1649 throw OrthancException(ErrorCode_UnknownResource); | |
1650 } | |
1651 | |
1247 | 1652 db_.DeleteMetadata(id, type); |
1773
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|
1653 |
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|
1654 if (IsUserMetadata(type)) |
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diff
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|
1655 { |
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|
1656 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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|
1657 } |
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|
1658 |
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|
1659 t.Commit(0); |
438 | 1660 } |
1661 | |
1662 | |
306
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1663 bool ServerIndex::LookupMetadata(std::string& target, |
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1664 const std::string& publicId, |
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1665 MetadataType type) |
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1666 { |
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|
1667 boost::mutex::scoped_lock lock(mutex_); |
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1668 |
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1669 ResourceType rtype; |
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1670 int64_t id; |
1294 | 1671 if (!db_.LookupResource(id, rtype, publicId)) |
306
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|
1672 { |
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|
1673 throw OrthancException(ErrorCode_UnknownResource); |
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|
1674 } |
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1675 |
1247 | 1676 return db_.LookupMetadata(target, id, type); |
306
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1677 } |
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|
1678 |
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1679 |
739 | 1680 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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|
1681 const std::string& publicId) |
d51186bf7602
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|
1682 { |
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|
1683 boost::mutex::scoped_lock lock(mutex_); |
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|
1684 |
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diff
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|
1685 ResourceType rtype; |
d51186bf7602
read access to metadata
Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
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|
1686 int64_t id; |
1294 | 1687 if (!db_.LookupResource(id, rtype, publicId)) |
436
d51186bf7602
read access to metadata
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diff
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|
1688 { |
d51186bf7602
read access to metadata
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434
diff
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|
1689 throw OrthancException(ErrorCode_UnknownResource); |
d51186bf7602
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Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
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|
1690 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
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|
1691 |
1247 | 1692 db_.ListAvailableMetadata(target, id); |
436
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diff
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|
1693 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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434
diff
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|
1694 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1695 |
697
dd1ce9a2844c
access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1696 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
dd1ce9a2844c
access to attachments
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diff
changeset
|
1697 const std::string& publicId, |
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1698 ResourceType expectedType) |
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1699 { |
dd1ce9a2844c
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diff
changeset
|
1700 boost::mutex::scoped_lock lock(mutex_); |
dd1ce9a2844c
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diff
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|
1701 |
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1702 ResourceType type; |
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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689
diff
changeset
|
1703 int64_t id; |
1294 | 1704 if (!db_.LookupResource(id, type, publicId) || |
697
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1705 expectedType != type) |
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1706 { |
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1707 throw OrthancException(ErrorCode_UnknownResource); |
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1708 } |
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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689
diff
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|
1709 |
1247 | 1710 db_.ListAvailableAttachments(target, id); |
697
dd1ce9a2844c
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1711 } |
dd1ce9a2844c
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diff
changeset
|
1712 |
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|
1713 |
306
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|
1714 bool ServerIndex::LookupParent(std::string& target, |
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|
1715 const std::string& publicId) |
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|
1716 { |
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|
1717 boost::mutex::scoped_lock lock(mutex_); |
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|
1718 |
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|
1719 ResourceType type; |
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|
1720 int64_t id; |
1294 | 1721 if (!db_.LookupResource(id, type, publicId)) |
306
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|
1722 { |
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|
1723 throw OrthancException(ErrorCode_UnknownResource); |
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|
1724 } |
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|
1725 |
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|
1726 int64_t parentId; |
1247 | 1727 if (db_.LookupParent(parentId, id)) |
306
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|
1728 { |
1247 | 1729 target = db_.GetPublicId(parentId); |
306
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1730 return true; |
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|
1731 } |
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|
1732 else |
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|
1733 { |
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|
1734 return false; |
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|
1735 } |
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|
1736 } |
310 | 1737 |
1738 | |
1739 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1740 { | |
1741 boost::mutex::scoped_lock lock(mutex_); | |
1310
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|
1742 Transaction transaction(*this); |
311 | 1743 |
1237 | 1744 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
1310
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|
1745 transaction.Commit(0); |
311 | 1746 |
1747 return seq; | |
310 | 1748 } |
315 | 1749 |
1750 | |
1751 | |
1752 void ServerIndex::LogChange(ChangeType changeType, | |
1753 const std::string& publicId) | |
1754 { | |
1755 boost::mutex::scoped_lock lock(mutex_); | |
1310
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diff
changeset
|
1756 Transaction transaction(*this); |
315 | 1757 |
1758 int64_t id; | |
1759 ResourceType type; | |
1294 | 1760 if (!db_.LookupResource(id, type, publicId)) |
315 | 1761 { |
1762 throw OrthancException(ErrorCode_UnknownResource); | |
1763 } | |
1764 | |
1237 | 1765 LogChange(id, changeType, type, publicId); |
1310
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|
1766 transaction.Commit(0); |
315 | 1767 } |
413
47d63c941902
clearing /exports and /changes
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399
diff
changeset
|
1768 |
47d63c941902
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399
diff
changeset
|
1769 |
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399
diff
changeset
|
1770 void ServerIndex::DeleteChanges() |
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diff
changeset
|
1771 { |
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diff
changeset
|
1772 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1773 db_.ClearChanges(); |
413
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399
diff
changeset
|
1774 } |
47d63c941902
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399
diff
changeset
|
1775 |
47d63c941902
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399
diff
changeset
|
1776 void ServerIndex::DeleteExportedResources() |
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diff
changeset
|
1777 { |
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diff
changeset
|
1778 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1779 db_.ClearExportedResources(); |
413
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diff
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|
1780 } |
440
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diff
changeset
|
1781 |
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diff
changeset
|
1782 |
646 | 1783 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1784 /* out */ uint64_t& uncompressedSize, | |
1785 /* out */ unsigned int& countStudies, | |
1786 /* out */ unsigned int& countSeries, | |
1787 /* out */ unsigned int& countInstances, | |
1788 /* in */ int64_t id, | |
1789 /* in */ ResourceType type) | |
440
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diff
changeset
|
1790 { |
646 | 1791 std::stack<int64_t> toExplore; |
1792 toExplore.push(id); | |
440
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1793 |
646 | 1794 countInstances = 0; |
1795 countSeries = 0; | |
1796 countStudies = 0; | |
1797 compressedSize = 0; | |
1798 uncompressedSize = 0; | |
440
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1799 |
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1800 while (!toExplore.empty()) |
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1801 { |
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1802 // Get the internal ID of the current resource |
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1803 int64_t resource = toExplore.top(); |
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1804 toExplore.pop(); |
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1805 |
1247 | 1806 ResourceType thisType = db_.GetResourceType(resource); |
440
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1807 |
702
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1808 std::list<FileContentType> f; |
1247 | 1809 db_.ListAvailableAttachments(f, resource); |
702
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1810 |
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1811 for (std::list<FileContentType>::const_iterator |
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1812 it = f.begin(); it != f.end(); ++it) |
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1813 { |
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1814 FileInfo attachment; |
1247 | 1815 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1816 { |
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1817 compressedSize += attachment.GetCompressedSize(); |
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1818 uncompressedSize += attachment.GetUncompressedSize(); |
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1819 } |
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1820 } |
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1821 |
440
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1822 if (thisType == ResourceType_Instance) |
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1823 { |
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1824 countInstances++; |
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1825 } |
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1826 else |
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1827 { |
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1828 switch (thisType) |
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1829 { |
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1830 case ResourceType_Study: |
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1831 countStudies++; |
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1832 break; |
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1833 |
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1834 case ResourceType_Series: |
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1835 countSeries++; |
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1836 break; |
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1837 |
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1838 default: |
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1839 break; |
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1840 } |
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1841 |
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1842 // Tag all the children of this resource as to be explored |
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1843 std::list<int64_t> tmp; |
1247 | 1844 db_.GetChildrenInternalId(tmp, resource); |
440
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1845 for (std::list<int64_t>::const_iterator |
656 | 1846 it = tmp.begin(); it != tmp.end(); ++it) |
440
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1847 { |
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1848 toExplore.push(*it); |
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1849 } |
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1850 } |
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1851 } |
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1852 |
646 | 1853 if (countStudies == 0) |
1854 { | |
1855 countStudies = 1; | |
1856 } | |
1857 | |
1858 if (countSeries == 0) | |
1859 { | |
1860 countSeries = 1; | |
1861 } | |
1862 } | |
1863 | |
1864 | |
1865 | |
1866 void ServerIndex::GetStatistics(Json::Value& target, | |
1867 const std::string& publicId) | |
1868 { | |
1869 boost::mutex::scoped_lock lock(mutex_); | |
1870 | |
1871 ResourceType type; | |
1872 int64_t top; | |
1294 | 1873 if (!db_.LookupResource(top, type, publicId)) |
646 | 1874 { |
1875 throw OrthancException(ErrorCode_UnknownResource); | |
1876 } | |
1877 | |
1878 uint64_t uncompressedSize; | |
1879 uint64_t compressedSize; | |
1880 unsigned int countStudies; | |
1881 unsigned int countSeries; | |
1882 unsigned int countInstances; | |
1883 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1884 countSeries, countInstances, top, type); | |
1885 | |
440
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1886 target = Json::objectValue; |
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1887 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
1310
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|
1888 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
440
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1889 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
1310
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1890 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1891 |
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1892 switch (type) |
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1893 { |
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1894 // Do NOT add "break" below this point! |
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1895 case ResourceType_Patient: |
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1896 target["CountStudies"] = countStudies; |
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1897 |
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1898 case ResourceType_Study: |
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1899 target["CountSeries"] = countSeries; |
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1900 |
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1901 case ResourceType_Series: |
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1902 target["CountInstances"] = countInstances; |
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1903 |
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1904 case ResourceType_Instance: |
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1905 default: |
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1906 break; |
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1907 } |
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1908 } |
511
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1909 |
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1910 |
646 | 1911 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1912 /* out */ uint64_t& uncompressedSize, | |
1913 /* out */ unsigned int& countStudies, | |
1914 /* out */ unsigned int& countSeries, | |
1915 /* out */ unsigned int& countInstances, | |
1916 const std::string& publicId) | |
1917 { | |
1918 boost::mutex::scoped_lock lock(mutex_); | |
1919 | |
1920 ResourceType type; | |
1921 int64_t top; | |
1294 | 1922 if (!db_.LookupResource(top, type, publicId)) |
646 | 1923 { |
1924 throw OrthancException(ErrorCode_UnknownResource); | |
1925 } | |
1926 | |
1927 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1928 countSeries, countInstances, top, type); | |
1929 } | |
1930 | |
1931 | |
2665
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1932 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that, |
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1933 unsigned int threadSleep) |
511
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1934 { |
2069
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1935 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60); |
511
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1936 if (stableAge <= 0) |
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1937 { |
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1938 stableAge = 60; |
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1939 } |
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1940 |
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1941 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1942 |
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1943 while (!that->done_) |
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1944 { |
2665
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1945 // Check for stable resources each few seconds |
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1946 boost::this_thread::sleep(boost::posix_time::milliseconds(threadSleep)); |
511
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1947 |
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1948 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1949 |
511
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1950 while (!that->unstableResources_.IsEmpty() && |
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1951 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1952 { |
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1953 // This DICOM resource has not received any new instance for |
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1954 // some time. It can be considered as stable. |
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1955 |
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1956 UnstableResourcePayload payload; |
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1957 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1958 |
513 | 1959 // Ensure that the resource is still existing before logging the change |
1247 | 1960 if (that->db_.IsExistingResource(id)) |
511
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1961 { |
1177
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1962 switch (payload.GetResourceType()) |
513 | 1963 { |
1177
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1964 case ResourceType_Patient: |
1237 | 1965 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1966 break; |
511
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1967 |
1177
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1968 case ResourceType_Study: |
1237 | 1969 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1970 break; |
511
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1971 |
1177
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1972 case ResourceType_Series: |
1237 | 1973 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1974 break; |
1975 | |
1976 default: | |
1977 throw OrthancException(ErrorCode_InternalError); | |
1978 } | |
1979 | |
1980 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1981 } |
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|
1982 } |
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|
1983 } |
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|
1984 |
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1985 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1986 } |
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|
1987 |
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|
1988 |
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1989 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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|
1990 Orthanc::ResourceType type, |
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|
1991 const std::string& publicId) |
511
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1992 { |
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|
1993 // WARNING: Before calling this method, "mutex_" must be locked. |
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|
1994 |
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diff
changeset
|
1995 assert(type == Orthanc::ResourceType_Patient || |
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diff
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|
1996 type == Orthanc::ResourceType_Study || |
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diff
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1997 type == Orthanc::ResourceType_Series); |
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|
1998 |
1177
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|
1999 UnstableResourcePayload payload(type, publicId); |
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|
2000 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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|
2001 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
6b9b02a16e99
NewChildInstance change type
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diff
changeset
|
2002 |
1237 | 2003 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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diff
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|
2004 } |
521 | 2005 |
2006 | |
2007 | |
1728
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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1727
diff
changeset
|
2008 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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rename LookupIdentifier as LookupIdentifierExact
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parents:
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diff
changeset
|
2009 ResourceType level, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
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diff
changeset
|
2010 const DicomTag& tag, |
4941494b5dd8
rename LookupIdentifier as LookupIdentifierExact
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2011 const std::string& value) |
615 | 2012 { |
1727 | 2013 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
2014 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
2015 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
2016 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
2017 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 2018 |
615 | 2019 result.clear(); |
2020 | |
2021 boost::mutex::scoped_lock lock(mutex_); | |
2022 | |
1746 | 2023 LookupIdentifierQuery query(level); |
2024 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
2025 query.Apply(result, db_); | |
615 | 2026 } |
2027 | |
2028 | |
699
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add attachments to resources
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diff
changeset
|
2029 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
2929e17f8447
add attachments to resources
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diff
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|
2030 const std::string& publicId) |
2929e17f8447
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diff
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|
2031 { |
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diff
changeset
|
2032 boost::mutex::scoped_lock lock(mutex_); |
2929e17f8447
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diff
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|
2033 |
2929e17f8447
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diff
changeset
|
2034 Transaction t(*this); |
2929e17f8447
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diff
changeset
|
2035 |
2929e17f8447
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diff
changeset
|
2036 ResourceType resourceType; |
2929e17f8447
add attachments to resources
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diff
changeset
|
2037 int64_t resourceId; |
1294 | 2038 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
2929e17f8447
add attachments to resources
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diff
changeset
|
2039 { |
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diff
changeset
|
2040 return StoreStatus_Failure; // Inexistent resource |
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diff
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|
2041 } |
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diff
changeset
|
2042 |
704
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diff
changeset
|
2043 // Remove possible previous attachment |
1247 | 2044 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
2929e17f8447
add attachments to resources
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diff
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|
2045 |
704
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diff
changeset
|
2046 // Locate the patient of the target resource |
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recycling with custom attachments
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diff
changeset
|
2047 int64_t patientId = resourceId; |
4789da60d655
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diff
changeset
|
2048 for (;;) |
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diff
changeset
|
2049 { |
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diff
changeset
|
2050 int64_t parent; |
1247 | 2051 if (db_.LookupParent(parent, patientId)) |
704
4789da60d655
recycling with custom attachments
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diff
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|
2052 { |
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diff
changeset
|
2053 // We have not reached the patient level yet |
4789da60d655
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diff
changeset
|
2054 patientId = parent; |
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diff
changeset
|
2055 } |
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diff
changeset
|
2056 else |
4789da60d655
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702
diff
changeset
|
2057 { |
4789da60d655
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diff
changeset
|
2058 // We have reached the patient level |
4789da60d655
recycling with custom attachments
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diff
changeset
|
2059 break; |
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diff
changeset
|
2060 } |
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diff
changeset
|
2061 } |
4789da60d655
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diff
changeset
|
2062 |
4789da60d655
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diff
changeset
|
2063 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2064 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2065 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
4789da60d655
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diff
changeset
|
2066 |
1247 | 2067 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
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diff
changeset
|
2068 |
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2069 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2070 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2071 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
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|
2072 } |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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changeset
|
2073 |
699
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diff
changeset
|
2074 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
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diff
changeset
|
2075 |
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diff
changeset
|
2076 return StoreStatus_Success; |
2929e17f8447
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changeset
|
2077 } |
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diff
changeset
|
2078 |
702
7592a48e97e4
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changeset
|
2079 |
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changeset
|
2080 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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changeset
|
2081 FileContentType type) |
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diff
changeset
|
2082 { |
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diff
changeset
|
2083 boost::mutex::scoped_lock lock(mutex_); |
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diff
changeset
|
2084 Transaction t(*this); |
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diff
changeset
|
2085 |
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changeset
|
2086 ResourceType rtype; |
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diff
changeset
|
2087 int64_t id; |
1294 | 2088 if (!db_.LookupResource(id, rtype, publicId)) |
702
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diff
changeset
|
2089 { |
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diff
changeset
|
2090 throw OrthancException(ErrorCode_UnknownResource); |
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diff
changeset
|
2091 } |
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diff
changeset
|
2092 |
1247 | 2093 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
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diff
changeset
|
2094 |
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
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changeset
|
2095 if (IsUserContentType(type)) |
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diff
changeset
|
2096 { |
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New UpdatedAttachment and UpdatedMetadata events in plugins
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diff
changeset
|
2097 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
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changeset
|
2098 } |
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diff
changeset
|
2099 |
702
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changeset
|
2100 t.Commit(0); |
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changeset
|
2101 } |
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changeset
|
2102 |
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changeset
|
2103 |
1002
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anonymization refactoring
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diff
changeset
|
2104 bool ServerIndex::GetMetadata(Json::Value& target, |
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changeset
|
2105 const std::string& publicId) |
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changeset
|
2106 { |
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changeset
|
2107 boost::mutex::scoped_lock lock(mutex_); |
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changeset
|
2108 |
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changeset
|
2109 target = Json::objectValue; |
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changeset
|
2110 |
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diff
changeset
|
2111 ResourceType type; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2112 int64_t id; |
1294 | 2113 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2114 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2115 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2116 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2117 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2118 std::list<MetadataType> metadata; |
1247 | 2119 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2120 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2121 for (std::list<MetadataType>::const_iterator |
1304 | 2122 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2123 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2124 std::string key = EnumerationToString(*it); |
1238 | 2125 |
2126 std::string value; | |
1247 | 2127 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2128 { |
2129 value.clear(); | |
2130 } | |
2131 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2132 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2133 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2134 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2135 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2136 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2137 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2138 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2139 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2140 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2141 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2142 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2143 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2144 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2145 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2146 |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2147 bool ServerIndex::LookupGlobalProperty(std::string& value, |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2148 GlobalProperty property) |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2149 { |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2150 boost::mutex::scoped_lock lock(mutex_); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2151 return db_.LookupGlobalProperty(value, property); |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2152 } |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2153 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2154 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2155 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2156 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2157 { |
1239 | 2158 std::string value; |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2159 |
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
2160 if (LookupGlobalProperty(value, property)) |
1239 | 2161 { |
2162 return value; | |
2163 } | |
2164 else | |
2165 { | |
2166 return defaultValue; | |
2167 } | |
1218
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2168 } |
efece308018e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2169 |
1352 | 2170 |
2171 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2172 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2173 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2174 ResourceType levelOfInterest) |
1352 | 2175 { |
1677
a903d57d9f0c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2176 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2177 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2178 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2179 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2180 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2181 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2182 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2183 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2184 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2185 |
1352 | 2186 result.Clear(); |
2187 | |
2188 boost::mutex::scoped_lock lock(mutex_); | |
2189 | |
2190 // Lookup for the requested resource | |
2191 int64_t id; | |
2192 ResourceType type; | |
2193 if (!db_.LookupResource(id, type, publicId) || | |
2194 type != expectedType) | |
2195 { | |
2196 return false; | |
2197 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2198 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2199 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2200 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2201 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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1676
diff
changeset
|
2202 db_.GetMainDicomTags(tmp, id); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2203 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2204 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2205 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2206 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2207 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2208 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2209 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2210 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2211 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2212 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2213 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2214 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2215 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2216 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2217 } |
1352 | 2218 else |
2219 { | |
2220 db_.GetMainDicomTags(result, id); | |
2221 return true; | |
2222 } | |
2223 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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1509
diff
changeset
|
2224 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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1509
diff
changeset
|
2225 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2226 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2227 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2228 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2229 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
2230 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2231 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2232 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2233 } |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2234 |
1668
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reconstructing main dicom tags
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diff
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|
2235 |
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changeset
|
2236 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
reconstructing main dicom tags
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diff
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|
2237 { |
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diff
changeset
|
2238 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
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diff
changeset
|
2239 return db_.GetDatabaseVersion(); |
de1413733c97
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diff
changeset
|
2240 } |
1750
55d52567bebb
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diff
changeset
|
2241 |
55d52567bebb
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diff
changeset
|
2242 |
1753 | 2243 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2244 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
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1754
diff
changeset
|
2245 const ::Orthanc::LookupResource& lookup) |
1750
55d52567bebb
LookupResource implemented
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diff
changeset
|
2246 { |
1753 | 2247 boost::mutex::scoped_lock lock(mutex_); |
2248 | |
2249 std::list<int64_t> tmp; | |
2250 lookup.FindCandidates(tmp, db_); | |
2251 | |
2252 resources.resize(tmp.size()); | |
2253 instances.resize(tmp.size()); | |
2254 | |
2255 size_t pos = 0; | |
2256 for (std::list<int64_t>::const_iterator | |
2257 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2258 { | |
1754 | 2259 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2260 | |
1753 | 2261 int64_t instance; |
2120 | 2262 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2263 { |
2264 throw OrthancException(ErrorCode_InternalError); | |
2265 } | |
2266 | |
2267 resources[pos] = db_.GetPublicId(*it); | |
2268 instances[pos] = db_.GetPublicId(instance); | |
2269 } | |
1750
55d52567bebb
LookupResource implemented
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1747
diff
changeset
|
2270 } |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
1823
diff
changeset
|
2271 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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diff
changeset
|
2272 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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diff
changeset
|
2273 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
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diff
changeset
|
2274 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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1823
diff
changeset
|
2275 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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1823
diff
changeset
|
2276 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
1823
diff
changeset
|
2277 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
1823
diff
changeset
|
2278 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
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parents:
1823
diff
changeset
|
2279 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2280 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2281 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2282 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2283 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2284 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2285 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2286 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2287 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2288 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2289 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2290 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2291 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2292 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2293 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2294 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2295 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2296 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2297 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2298 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2299 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2300 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2301 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2302 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2303 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2304 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2305 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2306 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2307 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2308 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2309 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2310 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2311 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2312 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2313 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2314 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2315 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2316 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2317 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2318 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2319 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2320 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2321 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2322 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2323 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2324 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2325 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2326 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2327 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2328 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2329 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2330 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2331 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2332 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2333 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2334 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2335 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2336 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2337 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2338 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2339 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2340 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2341 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2342 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2343 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2344 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2345 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2346 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2347 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2348 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2349 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2350 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2351 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2352 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2353 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2354 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2355 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2356 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2357 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2358 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2359 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2360 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2361 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2362 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2363 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2364 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2365 } |
0 | 2366 } |