Mercurial > hg > orthanc
annotate OrthancServer/Sources/Database/SQLiteDatabaseWrapper.cpp @ 5437:85da6dcd0e08
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author | Alain Mazy <am@osimis.io> |
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date | Wed, 22 Nov 2023 09:39:35 +0100 |
parents | 261ce0ed85e6 |
children | 176bc05f85f4 48b8dae6dc77 |
rev | line source |
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183 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
183 | 7 * |
8 * This program is free software: you can redistribute it and/or | |
9 * modify it under the terms of the GNU General Public License as | |
10 * published by the Free Software Foundation, either version 3 of the | |
11 * License, or (at your option) any later version. | |
12 * | |
13 * This program is distributed in the hope that it will be useful, but | |
14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
16 * General Public License for more details. | |
17 * | |
18 * You should have received a copy of the GNU General Public License | |
19 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
20 **/ | |
21 | |
22 | |
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23 #include "../PrecompiledHeadersServer.h" |
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24 #include "SQLiteDatabaseWrapper.h" |
183 | 25 |
4045 | 26 #include "../../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
27 #include "../../../OrthancFramework/Sources/Logging.h" | |
28 #include "../../../OrthancFramework/Sources/SQLite/Transaction.h" | |
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29 #include "../Search/ISqlLookupFormatter.h" |
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30 #include "../ServerToolbox.h" |
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31 #include "Compatibility/ICreateInstance.h" |
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32 #include "Compatibility/IGetChildrenMetadata.h" |
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33 #include "Compatibility/ILookupResourceAndParent.h" |
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34 #include "Compatibility/ISetResourcesContent.h" |
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35 #include "VoidDatabaseListener.h" |
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36 |
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37 #include <OrthancServerResources.h> |
183 | 38 |
39 #include <stdio.h> | |
1247 | 40 #include <boost/lexical_cast.hpp> |
183 | 41 |
42 namespace Orthanc | |
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43 { |
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44 class SQLiteDatabaseWrapper::LookupFormatter : public ISqlLookupFormatter |
183 | 45 { |
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46 private: |
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47 std::list<std::string> values_; |
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48 |
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49 public: |
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50 virtual std::string GenerateParameter(const std::string& value) ORTHANC_OVERRIDE |
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51 { |
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52 values_.push_back(value); |
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53 return "?"; |
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54 } |
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55 |
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56 virtual std::string FormatResourceType(ResourceType level) ORTHANC_OVERRIDE |
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57 { |
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58 return boost::lexical_cast<std::string>(level); |
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59 } |
183 | 60 |
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61 virtual std::string FormatWildcardEscape() ORTHANC_OVERRIDE |
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62 { |
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63 return "ESCAPE '\\'"; |
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64 } |
1158 | 65 |
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66 virtual bool IsEscapeBrackets() const ORTHANC_OVERRIDE |
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67 { |
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68 return false; |
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69 } |
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70 |
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71 void Bind(SQLite::Statement& statement) const |
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72 { |
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73 size_t pos = 0; |
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74 |
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75 for (std::list<std::string>::const_iterator |
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76 it = values_.begin(); it != values_.end(); ++it, pos++) |
1158 | 77 { |
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78 statement.BindString(pos, *it); |
1158 | 79 } |
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80 } |
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81 }; |
1158 | 82 |
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83 |
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84 class SQLiteDatabaseWrapper::SignalRemainingAncestor : public SQLite::IScalarFunction |
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85 { |
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86 private: |
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87 bool hasRemainingAncestor_; |
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88 std::string remainingPublicId_; |
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89 ResourceType remainingType_; |
660 | 90 |
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91 public: |
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92 SignalRemainingAncestor() : |
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93 hasRemainingAncestor_(false) |
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94 { |
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95 } |
183 | 96 |
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97 void Reset() |
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98 { |
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99 hasRemainingAncestor_ = false; |
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100 } |
183 | 101 |
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102 virtual const char* GetName() const ORTHANC_OVERRIDE |
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103 { |
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104 return "SignalRemainingAncestor"; |
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105 } |
183 | 106 |
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107 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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108 { |
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109 return 2; |
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110 } |
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111 |
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112 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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113 { |
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114 CLOG(TRACE, SQLITE) << "There exists a remaining ancestor with public ID \"" |
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115 << context.GetStringValue(0) << "\" of type " |
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116 << context.GetIntValue(1); |
183 | 117 |
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118 if (!hasRemainingAncestor_ || |
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119 remainingType_ >= context.GetIntValue(1)) |
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120 { |
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121 hasRemainingAncestor_ = true; |
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122 remainingPublicId_ = context.GetStringValue(0); |
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123 remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); |
183 | 124 } |
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125 } |
183 | 126 |
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127 bool HasRemainingAncestor() const |
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128 { |
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129 return hasRemainingAncestor_; |
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130 } |
183 | 131 |
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132 const std::string& GetRemainingAncestorId() const |
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133 { |
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134 assert(hasRemainingAncestor_); |
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135 return remainingPublicId_; |
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136 } |
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137 |
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138 ResourceType GetRemainingAncestorType() const |
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139 { |
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140 assert(hasRemainingAncestor_); |
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141 return remainingType_; |
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142 } |
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143 }; |
183 | 144 |
145 | |
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146 class SQLiteDatabaseWrapper::TransactionBase : |
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147 public SQLiteDatabaseWrapper::UnitTestsTransaction, |
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148 public Compatibility::ICreateInstance, |
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149 public Compatibility::IGetChildrenMetadata, |
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150 public Compatibility::ILookupResourceAndParent, |
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151 public Compatibility::ISetResourcesContent |
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152 { |
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153 private: |
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154 void AnswerLookup(std::list<std::string>& resourcesId, |
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155 std::list<std::string>& instancesId, |
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156 ResourceType level) |
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157 { |
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158 resourcesId.clear(); |
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159 instancesId.clear(); |
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160 |
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161 std::unique_ptr<SQLite::Statement> statement; |
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162 |
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163 switch (level) |
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164 { |
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165 case ResourceType_Patient: |
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166 { |
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167 statement.reset( |
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168 new SQLite::Statement( |
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169 db_, SQLITE_FROM_HERE, |
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170 "SELECT patients.publicId, instances.publicID FROM Lookup AS patients " |
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171 "INNER JOIN Resources studies ON patients.internalId=studies.parentId " |
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172 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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173 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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174 "GROUP BY patients.publicId")); |
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175 |
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176 break; |
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177 } |
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178 |
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179 case ResourceType_Study: |
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180 { |
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181 statement.reset( |
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182 new SQLite::Statement( |
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183 db_, SQLITE_FROM_HERE, |
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184 "SELECT studies.publicId, instances.publicID FROM Lookup AS studies " |
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185 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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186 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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187 "GROUP BY studies.publicId")); |
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188 |
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189 break; |
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190 } |
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191 |
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192 case ResourceType_Series: |
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193 { |
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194 statement.reset( |
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195 new SQLite::Statement( |
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196 db_, SQLITE_FROM_HERE, |
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197 "SELECT series.publicId, instances.publicID FROM Lookup AS series " |
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198 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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199 "GROUP BY series.publicId")); |
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200 |
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201 break; |
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202 } |
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203 |
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204 case ResourceType_Instance: |
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205 { |
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206 statement.reset( |
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207 new SQLite::Statement( |
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208 db_, SQLITE_FROM_HERE, "SELECT publicId, publicId FROM Lookup")); |
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209 |
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210 break; |
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211 } |
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212 |
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213 default: |
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214 throw OrthancException(ErrorCode_InternalError); |
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215 } |
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216 |
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217 assert(statement.get() != NULL); |
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218 |
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219 while (statement->Step()) |
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220 { |
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221 resourcesId.push_back(statement->ColumnString(0)); |
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222 instancesId.push_back(statement->ColumnString(1)); |
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223 } |
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224 } |
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225 |
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226 |
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227 void ClearTable(const std::string& tableName) |
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228 { |
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229 db_.Execute("DELETE FROM " + tableName); |
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230 } |
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231 |
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232 |
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233 void GetChangesInternal(std::list<ServerIndexChange>& target, |
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234 bool& done, |
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235 SQLite::Statement& s, |
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236 uint32_t limit) |
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237 { |
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238 target.clear(); |
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239 |
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240 while (target.size() < limit && s.Step()) |
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241 { |
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242 int64_t seq = s.ColumnInt64(0); |
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243 ChangeType changeType = static_cast<ChangeType>(s.ColumnInt(1)); |
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244 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(3)); |
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245 const std::string& date = s.ColumnString(4); |
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246 |
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247 int64_t internalId = s.ColumnInt64(2); |
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248 std::string publicId = GetPublicId(internalId); |
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249 |
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250 target.push_back(ServerIndexChange(seq, changeType, resourceType, publicId, date)); |
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251 } |
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252 |
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253 done = !(target.size() == limit && s.Step()); |
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254 } |
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255 |
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256 |
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257 void GetExportedResourcesInternal(std::list<ExportedResource>& target, |
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258 bool& done, |
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259 SQLite::Statement& s, |
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260 uint32_t limit) |
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261 { |
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262 target.clear(); |
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263 |
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264 while (target.size() < limit && s.Step()) |
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265 { |
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266 int64_t seq = s.ColumnInt64(0); |
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267 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(1)); |
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268 std::string publicId = s.ColumnString(2); |
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269 |
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270 ExportedResource resource(seq, |
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271 resourceType, |
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272 publicId, |
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273 s.ColumnString(3), // modality |
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274 s.ColumnString(8), // date |
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275 s.ColumnString(4), // patient ID |
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276 s.ColumnString(5), // study instance UID |
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277 s.ColumnString(6), // series instance UID |
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278 s.ColumnString(7)); // sop instance UID |
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279 |
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280 target.push_back(resource); |
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281 } |
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282 |
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283 done = !(target.size() == limit && s.Step()); |
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284 } |
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285 |
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286 |
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287 void GetChildren(std::list<std::string>& childrenPublicIds, |
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288 int64_t id) |
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289 { |
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290 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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291 s.BindInt64(0, id); |
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292 |
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293 childrenPublicIds.clear(); |
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294 while (s.Step()) |
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295 { |
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296 childrenPublicIds.push_back(s.ColumnString(0)); |
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297 } |
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298 } |
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299 |
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300 boost::mutex::scoped_lock lock_; |
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301 IDatabaseListener& listener_; |
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302 SignalRemainingAncestor& signalRemainingAncestor_; |
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303 |
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304 public: |
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305 TransactionBase(boost::mutex& mutex, |
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306 SQLite::Connection& db, |
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307 IDatabaseListener& listener, |
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308 SignalRemainingAncestor& signalRemainingAncestor) : |
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309 UnitTestsTransaction(db), |
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310 lock_(mutex), |
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311 listener_(listener), |
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312 signalRemainingAncestor_(signalRemainingAncestor) |
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313 { |
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314 } |
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315 |
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316 IDatabaseListener& GetListener() const |
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317 { |
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318 return listener_; |
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319 } |
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320 |
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321 |
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322 virtual void AddAttachment(int64_t id, |
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323 const FileInfo& attachment, |
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324 int64_t revision) ORTHANC_OVERRIDE |
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325 { |
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326 // TODO - REVISIONS |
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327 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles (id, fileType, uuid, compressedSize, uncompressedSize, compressionType, uncompressedMD5, compressedMD5) VALUES(?, ?, ?, ?, ?, ?, ?, ?)"); |
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328 s.BindInt64(0, id); |
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329 s.BindInt(1, attachment.GetContentType()); |
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330 s.BindString(2, attachment.GetUuid()); |
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331 s.BindInt64(3, attachment.GetCompressedSize()); |
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332 s.BindInt64(4, attachment.GetUncompressedSize()); |
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333 s.BindInt(5, attachment.GetCompressionType()); |
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334 s.BindString(6, attachment.GetUncompressedMD5()); |
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335 s.BindString(7, attachment.GetCompressedMD5()); |
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336 s.Run(); |
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337 } |
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338 |
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339 |
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340 virtual void ApplyLookupResources(std::list<std::string>& resourcesId, |
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341 std::list<std::string>* instancesId, |
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342 const std::vector<DatabaseConstraint>& lookup, |
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343 ResourceType queryLevel, |
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344 const std::set<std::string>& labels, |
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345 LabelsConstraint labelsConstraint, |
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346 uint32_t limit) ORTHANC_OVERRIDE |
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347 { |
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348 LookupFormatter formatter; |
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349 |
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350 std::string sql; |
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351 LookupFormatter::Apply(sql, formatter, lookup, queryLevel, labels, labelsConstraint, limit); |
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352 |
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353 sql = "CREATE TEMPORARY TABLE Lookup AS " + sql; |
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354 |
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355 { |
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356 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DROP TABLE IF EXISTS Lookup"); |
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357 s.Run(); |
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358 } |
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359 |
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360 { |
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361 SQLite::Statement statement(db_, sql); |
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362 formatter.Bind(statement); |
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363 statement.Run(); |
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364 } |
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365 |
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366 if (instancesId != NULL) |
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367 { |
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368 AnswerLookup(resourcesId, *instancesId, queryLevel); |
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369 } |
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370 else |
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371 { |
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372 resourcesId.clear(); |
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373 |
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374 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Lookup"); |
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375 |
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376 while (s.Step()) |
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377 { |
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378 resourcesId.push_back(s.ColumnString(0)); |
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379 } |
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380 } |
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381 } |
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382 |
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383 |
4592 | 384 // From the "ICreateInstance" interface |
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385 virtual void AttachChild(int64_t parent, |
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386 int64_t child) ORTHANC_OVERRIDE |
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387 { |
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388 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
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389 s.BindInt64(0, parent); |
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390 s.BindInt64(1, child); |
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391 s.Run(); |
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392 } |
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393 |
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394 |
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395 virtual void ClearChanges() ORTHANC_OVERRIDE |
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396 { |
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397 ClearTable("Changes"); |
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398 } |
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399 |
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400 virtual void ClearExportedResources() ORTHANC_OVERRIDE |
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401 { |
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402 ClearTable("ExportedResources"); |
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403 } |
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404 |
1241 | 405 |
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406 virtual void ClearMainDicomTags(int64_t id) ORTHANC_OVERRIDE |
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407 { |
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408 { |
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409 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM DicomIdentifiers WHERE id=?"); |
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410 s.BindInt64(0, id); |
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411 s.Run(); |
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412 } |
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413 |
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414 { |
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415 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM MainDicomTags WHERE id=?"); |
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416 s.BindInt64(0, id); |
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417 s.Run(); |
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418 } |
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419 } |
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420 |
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421 |
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422 virtual bool CreateInstance(CreateInstanceResult& result, |
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423 int64_t& instanceId, |
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424 const std::string& patient, |
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425 const std::string& study, |
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426 const std::string& series, |
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427 const std::string& instance) ORTHANC_OVERRIDE |
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428 { |
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429 return ICreateInstance::Apply |
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430 (*this, result, instanceId, patient, study, series, instance); |
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431 } |
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432 |
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433 |
4592 | 434 // From the "ICreateInstance" interface |
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435 virtual int64_t CreateResource(const std::string& publicId, |
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436 ResourceType type) ORTHANC_OVERRIDE |
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437 { |
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438 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources (internalId, resourceType, publicId, parentId) VALUES(NULL, ?, ?, NULL)"); |
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439 s.BindInt(0, type); |
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440 s.BindString(1, publicId); |
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441 s.Run(); |
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442 return db_.GetLastInsertRowId(); |
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443 } |
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444 |
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445 |
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446 virtual void DeleteAttachment(int64_t id, |
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447 FileContentType attachment) ORTHANC_OVERRIDE |
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448 { |
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449 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM AttachedFiles WHERE id=? AND fileType=?"); |
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450 s.BindInt64(0, id); |
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451 s.BindInt(1, attachment); |
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452 s.Run(); |
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453 } |
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454 |
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455 |
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456 virtual void DeleteMetadata(int64_t id, |
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457 MetadataType type) ORTHANC_OVERRIDE |
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458 { |
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459 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Metadata WHERE id=? and type=?"); |
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460 s.BindInt64(0, id); |
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461 s.BindInt(1, type); |
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462 s.Run(); |
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463 } |
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464 |
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465 |
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466 virtual void DeleteResource(int64_t id) ORTHANC_OVERRIDE |
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467 { |
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468 signalRemainingAncestor_.Reset(); |
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469 |
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470 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); |
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471 s.BindInt64(0, id); |
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472 s.Run(); |
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473 |
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474 if (signalRemainingAncestor_.HasRemainingAncestor()) |
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475 { |
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476 listener_.SignalRemainingAncestor(signalRemainingAncestor_.GetRemainingAncestorType(), |
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477 signalRemainingAncestor_.GetRemainingAncestorId()); |
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478 } |
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479 } |
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480 |
183 | 481 |
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482 virtual void GetAllMetadata(std::map<MetadataType, std::string>& target, |
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483 int64_t id) ORTHANC_OVERRIDE |
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484 { |
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485 target.clear(); |
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486 |
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487 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type, value FROM Metadata WHERE id=?"); |
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488 s.BindInt64(0, id); |
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489 |
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490 while (s.Step()) |
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491 { |
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492 MetadataType key = static_cast<MetadataType>(s.ColumnInt(0)); |
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493 target[key] = s.ColumnString(1); |
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494 } |
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495 } |
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496 |
183 | 497 |
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498 virtual void GetAllPublicIds(std::list<std::string>& target, |
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499 ResourceType resourceType) ORTHANC_OVERRIDE |
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500 { |
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501 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); |
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502 s.BindInt(0, resourceType); |
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503 |
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504 target.clear(); |
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505 while (s.Step()) |
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506 { |
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507 target.push_back(s.ColumnString(0)); |
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508 } |
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509 } |
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510 |
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511 |
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512 virtual void GetAllPublicIds(std::list<std::string>& target, |
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513 ResourceType resourceType, |
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514 int64_t since, |
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515 uint32_t limit) ORTHANC_OVERRIDE |
183 | 516 { |
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517 if (limit == 0) |
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518 { |
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519 target.clear(); |
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520 return; |
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521 } |
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522 |
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523 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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524 "SELECT publicId FROM Resources WHERE " |
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525 "resourceType=? LIMIT ? OFFSET ?"); |
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526 s.BindInt(0, resourceType); |
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527 s.BindInt64(1, limit); |
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528 s.BindInt64(2, since); |
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529 |
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530 target.clear(); |
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531 while (s.Step()) |
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532 { |
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533 target.push_back(s.ColumnString(0)); |
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534 } |
183 | 535 } |
536 | |
537 | |
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538 virtual void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
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539 bool& done /*out*/, |
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540 int64_t since, |
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541 uint32_t limit) ORTHANC_OVERRIDE |
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542 { |
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543 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes WHERE seq>? ORDER BY seq LIMIT ?"); |
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544 s.BindInt64(0, since); |
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545 s.BindInt(1, limit + 1); |
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546 GetChangesInternal(target, done, s, limit); |
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547 } |
183 | 548 |
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549 |
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550 virtual void GetChildrenMetadata(std::list<std::string>& target, |
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551 int64_t resourceId, |
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552 MetadataType metadata) ORTHANC_OVERRIDE |
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553 { |
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554 IGetChildrenMetadata::Apply(*this, target, resourceId, metadata); |
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555 } |
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556 |
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557 |
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558 virtual void GetChildrenInternalId(std::list<int64_t>& target, |
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559 int64_t id) ORTHANC_OVERRIDE |
183 | 560 { |
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561 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.internalId FROM Resources AS a, Resources AS b " |
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562 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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563 s.BindInt64(0, id); |
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564 |
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565 target.clear(); |
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566 |
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567 while (s.Step()) |
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568 { |
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569 target.push_back(s.ColumnInt64(0)); |
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570 } |
183 | 571 } |
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572 |
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573 |
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574 virtual void GetChildrenPublicId(std::list<std::string>& target, |
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575 int64_t id) ORTHANC_OVERRIDE |
183 | 576 { |
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577 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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578 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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579 s.BindInt64(0, id); |
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580 |
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581 target.clear(); |
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582 |
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583 while (s.Step()) |
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584 { |
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585 target.push_back(s.ColumnString(0)); |
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586 } |
183 | 587 } |
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588 |
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589 |
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590 virtual void GetExportedResources(std::list<ExportedResource>& target, |
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591 bool& done, |
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592 int64_t since, |
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593 uint32_t limit) ORTHANC_OVERRIDE |
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594 { |
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595 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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596 "SELECT * FROM ExportedResources WHERE seq>? ORDER BY seq LIMIT ?"); |
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597 s.BindInt64(0, since); |
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598 s.BindInt(1, limit + 1); |
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599 GetExportedResourcesInternal(target, done, s, limit); |
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600 } |
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601 |
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602 |
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603 virtual void GetLastChange(std::list<ServerIndexChange>& target /*out*/) ORTHANC_OVERRIDE |
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604 { |
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605 bool done; // Ignored |
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606 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); |
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607 GetChangesInternal(target, done, s, 1); |
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608 } |
183 | 609 |
610 | |
4591
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611 int64_t GetLastChangeIndex() ORTHANC_OVERRIDE |
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612 { |
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613 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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614 "SELECT seq FROM sqlite_sequence WHERE name='Changes'"); |
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615 |
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616 if (s.Step()) |
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617 { |
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618 int64_t c = s.ColumnInt(0); |
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619 assert(!s.Step()); |
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620 return c; |
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621 } |
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622 else |
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623 { |
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624 // No change has been recorded so far in the database |
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625 return 0; |
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626 } |
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627 } |
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628 |
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629 |
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630 virtual void GetLastExportedResource(std::list<ExportedResource>& target) ORTHANC_OVERRIDE |
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631 { |
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632 bool done; // Ignored |
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633 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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634 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); |
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635 GetExportedResourcesInternal(target, done, s, 1); |
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636 } |
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637 |
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638 |
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639 virtual void GetMainDicomTags(DicomMap& map, |
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640 int64_t id) ORTHANC_OVERRIDE |
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641 { |
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642 map.Clear(); |
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643 |
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644 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); |
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645 s.BindInt64(0, id); |
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646 while (s.Step()) |
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647 { |
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648 map.SetValue(s.ColumnInt(1), |
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649 s.ColumnInt(2), |
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650 s.ColumnString(3), false); |
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651 } |
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652 } |
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653 |
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654 |
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655 virtual std::string GetPublicId(int64_t resourceId) ORTHANC_OVERRIDE |
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656 { |
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657 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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658 "SELECT publicId FROM Resources WHERE internalId=?"); |
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659 s.BindInt64(0, resourceId); |
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660 |
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661 if (s.Step()) |
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662 { |
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663 return s.ColumnString(0); |
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664 } |
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665 else |
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666 { |
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667 throw OrthancException(ErrorCode_UnknownResource); |
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668 } |
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669 } |
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|
670 |
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|
671 |
4595
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|
672 virtual uint64_t GetResourcesCount(ResourceType resourceType) ORTHANC_OVERRIDE |
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673 { |
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674 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
675 "SELECT COUNT(*) FROM Resources WHERE resourceType=?"); |
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|
676 s.BindInt(0, resourceType); |
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|
677 |
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678 if (!s.Step()) |
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679 { |
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680 return 0; |
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681 } |
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682 else |
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683 { |
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684 int64_t c = s.ColumnInt(0); |
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685 assert(!s.Step()); |
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686 return c; |
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687 } |
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688 } |
183 | 689 |
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|
690 |
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691 virtual ResourceType GetResourceType(int64_t resourceId) ORTHANC_OVERRIDE |
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692 { |
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|
693 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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694 "SELECT resourceType FROM Resources WHERE internalId=?"); |
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695 s.BindInt64(0, resourceId); |
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696 |
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697 if (s.Step()) |
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698 { |
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699 return static_cast<ResourceType>(s.ColumnInt(0)); |
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700 } |
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701 else |
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702 { |
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703 throw OrthancException(ErrorCode_UnknownResource); |
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|
704 } |
3809
2bf30ef727e3
enforcing SQLiteDatabaseWrapper::GetTableRecordCount() against SQL injection
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diff
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|
705 } |
4591
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|
706 |
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707 |
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708 virtual uint64_t GetTotalCompressedSize() ORTHANC_OVERRIDE |
218 | 709 { |
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710 // Old SQL query that was used in Orthanc <= 1.5.0: |
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711 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); |
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712 |
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713 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=0"); |
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|
714 s.Run(); |
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715 return static_cast<uint64_t>(s.ColumnInt64(0)); |
218 | 716 } |
183 | 717 |
718 | |
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719 virtual uint64_t GetTotalUncompressedSize() ORTHANC_OVERRIDE |
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720 { |
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721 // Old SQL query that was used in Orthanc <= 1.5.0: |
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722 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); |
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|
723 |
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724 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=1"); |
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725 s.Run(); |
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726 return static_cast<uint64_t>(s.ColumnInt64(0)); |
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727 } |
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|
728 |
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|
729 |
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|
730 virtual bool IsDiskSizeAbove(uint64_t threshold) ORTHANC_OVERRIDE |
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731 { |
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732 return GetTotalCompressedSize() > threshold; |
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733 } |
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734 |
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735 |
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736 virtual bool IsProtectedPatient(int64_t internalId) ORTHANC_OVERRIDE |
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737 { |
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738 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
739 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ?"); |
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740 s.BindInt64(0, internalId); |
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741 return !s.Step(); |
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742 } |
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743 |
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744 |
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|
745 virtual void ListAvailableAttachments(std::set<FileContentType>& target, |
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746 int64_t id) ORTHANC_OVERRIDE |
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747 { |
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748 target.clear(); |
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|
749 |
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|
750 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
751 "SELECT fileType FROM AttachedFiles WHERE id=?"); |
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|
752 s.BindInt64(0, id); |
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|
753 |
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|
754 while (s.Step()) |
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|
755 { |
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|
756 target.insert(static_cast<FileContentType>(s.ColumnInt(0))); |
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|
757 } |
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758 } |
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changeset
|
759 |
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changeset
|
760 |
5216
450ac804d3af
simplifying IDatabaseWrapper::LogChange()
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diff
changeset
|
761 virtual void LogChange(ChangeType changeType, |
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|
762 ResourceType resourceType, |
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|
763 int64_t internalId, |
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|
764 const std::string& /* publicId - unused */, |
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|
765 const std::string& date) ORTHANC_OVERRIDE |
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|
766 { |
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Alain Mazy <am@osimis.io>
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diff
changeset
|
767 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes (seq, changeType, internalId, resourceType, date) VALUES(NULL, ?, ?, ?, ?)"); |
5216
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|
768 s.BindInt(0, changeType); |
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|
769 s.BindInt64(1, internalId); |
5216
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|
770 s.BindInt(2, resourceType); |
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|
771 s.BindString(3, date); |
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|
772 s.Run(); |
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|
773 } |
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changeset
|
774 |
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changeset
|
775 |
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776 virtual void LogExportedResource(const ExportedResource& resource) ORTHANC_OVERRIDE |
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777 { |
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|
778 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
779 "INSERT INTO ExportedResources (seq, resourceType, publicId, remoteModality, patientId, studyInstanceUid, seriesInstanceUid, sopInstanceUid, date) VALUES(NULL, ?, ?, ?, ?, ?, ?, ?, ?)"); |
4591
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|
780 |
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|
781 s.BindInt(0, resource.GetResourceType()); |
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|
782 s.BindString(1, resource.GetPublicId()); |
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|
783 s.BindString(2, resource.GetModality()); |
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|
784 s.BindString(3, resource.GetPatientId()); |
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|
785 s.BindString(4, resource.GetStudyInstanceUid()); |
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|
786 s.BindString(5, resource.GetSeriesInstanceUid()); |
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|
787 s.BindString(6, resource.GetSopInstanceUid()); |
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|
788 s.BindString(7, resource.GetDate()); |
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|
789 s.Run(); |
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|
790 } |
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changeset
|
791 |
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diff
changeset
|
792 |
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changeset
|
793 virtual bool LookupAttachment(FileInfo& attachment, |
4627
f7d5372b59b3
handling revisions of attachments
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|
794 int64_t& revision, |
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|
795 int64_t id, |
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|
796 FileContentType contentType) ORTHANC_OVERRIDE |
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|
797 { |
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changeset
|
798 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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changeset
|
799 "SELECT uuid, uncompressedSize, compressionType, compressedSize, " |
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changeset
|
800 "uncompressedMD5, compressedMD5 FROM AttachedFiles WHERE id=? AND fileType=?"); |
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changeset
|
801 s.BindInt64(0, id); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
802 s.BindInt(1, contentType); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
803 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
804 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
805 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
806 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
807 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
808 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
809 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
810 attachment = FileInfo(s.ColumnString(0), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
811 contentType, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
812 s.ColumnInt64(1), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
813 s.ColumnString(4), |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
814 static_cast<CompressionType>(s.ColumnInt(2)), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
815 s.ColumnInt64(3), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
816 s.ColumnString(5)); |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
817 revision = 0; // TODO - REVISIONS |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
818 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
819 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
820 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
821 |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
822 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
823 virtual bool LookupGlobalProperty(std::string& target, |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
824 GlobalProperty property, |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
825 bool shared) ORTHANC_OVERRIDE |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
826 { |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
827 // The "shared" info is not used by the SQLite database, as it |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
828 // can only be used by one Orthanc server. |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
829 |
4591
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
830 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
831 "SELECT value FROM GlobalProperties WHERE property=?"); |
ff8170d17d90
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parents:
4589
diff
changeset
|
832 s.BindInt(0, property); |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
833 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
834 if (!s.Step()) |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
835 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
836 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
837 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
838 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
839 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
4589
diff
changeset
|
840 target = s.ColumnString(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
841 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
842 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
843 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
844 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
845 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
846 virtual bool LookupMetadata(std::string& target, |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
847 int64_t& revision, |
4591
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
848 int64_t id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
849 MetadataType type) ORTHANC_OVERRIDE |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
850 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
851 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
852 "SELECT value FROM Metadata WHERE id=? AND type=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
4589
diff
changeset
|
853 s.BindInt64(0, id); |
ff8170d17d90
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parents:
4589
diff
changeset
|
854 s.BindInt(1, type); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
855 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
856 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
857 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
858 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
859 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
860 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
861 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
862 target = s.ColumnString(0); |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
863 revision = 0; // TODO - REVISIONS |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
864 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
865 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
866 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
867 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
868 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
869 virtual bool LookupParent(int64_t& parentId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
870 int64_t resourceId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
871 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
872 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
873 "SELECT parentId FROM Resources WHERE internalId=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
874 s.BindInt64(0, resourceId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
875 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
4589
diff
changeset
|
876 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
877 { |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
878 throw OrthancException(ErrorCode_UnknownResource); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
879 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
880 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
881 if (s.ColumnIsNull(0)) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
882 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
883 return false; |
ff8170d17d90
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parents:
4589
diff
changeset
|
884 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
885 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
886 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
4589
diff
changeset
|
887 parentId = s.ColumnInt(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
888 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
889 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
890 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
891 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
892 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
893 virtual bool LookupResourceAndParent(int64_t& id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
894 ResourceType& type, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
895 std::string& parentPublicId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
4589
diff
changeset
|
896 const std::string& publicId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
897 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
898 return ILookupResourceAndParent::Apply(*this, id, type, parentPublicId, publicId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
899 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
900 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
901 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
902 virtual bool LookupResource(int64_t& id, |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
903 ResourceType& type, |
ff8170d17d90
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diff
changeset
|
904 const std::string& publicId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
905 { |
ff8170d17d90
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diff
changeset
|
906 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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diff
changeset
|
907 "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
908 s.BindString(0, publicId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
909 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
910 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
911 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
912 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
913 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
914 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
915 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
916 id = s.ColumnInt(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
917 type = static_cast<ResourceType>(s.ColumnInt(1)); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
918 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
919 // Check whether there is a single resource with this public id |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
920 assert(!s.Step()); |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
921 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
922 return true; |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
923 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
924 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
925 |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
926 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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|
927 virtual bool SelectPatientToRecycle(int64_t& internalId) ORTHANC_OVERRIDE |
ff8170d17d90
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diff
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|
928 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
929 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
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diff
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|
930 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
931 |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
932 if (!s.Step()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
933 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
934 // No patient remaining or all the patients are protected |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
935 return false; |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
936 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
937 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
938 { |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
939 internalId = s.ColumnInt(0); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
940 return true; |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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4589
diff
changeset
|
941 } |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
942 } |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
943 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
944 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
945 virtual bool SelectPatientToRecycle(int64_t& internalId, |
ff8170d17d90
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diff
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|
946 int64_t patientIdToAvoid) ORTHANC_OVERRIDE |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
947 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
948 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
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diff
changeset
|
949 "SELECT patientId FROM PatientRecyclingOrder " |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
950 "WHERE patientId != ? ORDER BY seq ASC LIMIT 1"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
951 s.BindInt64(0, patientIdToAvoid); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
952 |
ff8170d17d90
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
953 if (!s.Step()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
954 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
955 // No patient remaining or all the patients are protected |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
956 return false; |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
957 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
958 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
959 { |
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diff
changeset
|
960 internalId = s.ColumnInt(0); |
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diff
changeset
|
961 return true; |
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diff
changeset
|
962 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
963 } |
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diff
changeset
|
964 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
965 |
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diff
changeset
|
966 virtual void SetGlobalProperty(GlobalProperty property, |
4607
f75c63aa9de0
differentiating between shared and private global properties
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4595
diff
changeset
|
967 bool shared, |
4591
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|
968 const std::string& value) ORTHANC_OVERRIDE |
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diff
changeset
|
969 { |
4607
f75c63aa9de0
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diff
changeset
|
970 // The "shared" info is not used by the SQLite database, as it |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
971 // can only be used by one Orthanc server. |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
972 |
5090
cc1a8b3ff319
Made the default SQLite DB more robust wrt future updates like adding new columns in DB.
Alain Mazy <am@osimis.io>
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diff
changeset
|
973 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties (property, value) VALUES(?, ?)"); |
4591
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|
974 s.BindInt(0, property); |
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|
975 s.BindString(1, value); |
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changeset
|
976 s.Run(); |
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changeset
|
977 } |
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diff
changeset
|
978 |
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diff
changeset
|
979 |
4592 | 980 // From the "ISetResourcesContent" interface |
4591
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diff
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|
981 virtual void SetIdentifierTag(int64_t id, |
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|
982 const DicomTag& tag, |
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changeset
|
983 const std::string& value) ORTHANC_OVERRIDE |
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diff
changeset
|
984 { |
5090
cc1a8b3ff319
Made the default SQLite DB more robust wrt future updates like adding new columns in DB.
Alain Mazy <am@osimis.io>
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diff
changeset
|
985 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
4591
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diff
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|
986 s.BindInt64(0, id); |
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diff
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|
987 s.BindInt(1, tag.GetGroup()); |
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diff
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|
988 s.BindInt(2, tag.GetElement()); |
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|
989 s.BindString(3, value); |
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|
990 s.Run(); |
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changeset
|
991 } |
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diff
changeset
|
992 |
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diff
changeset
|
993 |
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changeset
|
994 virtual void SetProtectedPatient(int64_t internalId, |
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|
995 bool isProtected) ORTHANC_OVERRIDE |
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changeset
|
996 { |
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changeset
|
997 if (isProtected) |
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changeset
|
998 { |
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changeset
|
999 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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|
1000 s.BindInt64(0, internalId); |
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|
1001 s.Run(); |
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changeset
|
1002 } |
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|
1003 else if (IsProtectedPatient(internalId)) |
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changeset
|
1004 { |
5090
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Alain Mazy <am@osimis.io>
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diff
changeset
|
1005 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO PatientRecyclingOrder (seq, patientId) VALUES(NULL, ?)"); |
4591
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changeset
|
1006 s.BindInt64(0, internalId); |
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|
1007 s.Run(); |
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changeset
|
1008 } |
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|
1009 else |
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diff
changeset
|
1010 { |
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diff
changeset
|
1011 // Nothing to do: The patient is already unprotected |
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changeset
|
1012 } |
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changeset
|
1013 } |
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changeset
|
1014 |
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diff
changeset
|
1015 |
4592 | 1016 // From the "ISetResourcesContent" interface |
4591
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|
1017 virtual void SetMainDicomTag(int64_t id, |
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|
1018 const DicomTag& tag, |
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changeset
|
1019 const std::string& value) ORTHANC_OVERRIDE |
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diff
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|
1020 { |
5090
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diff
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|
1021 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
4591
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1022 s.BindInt64(0, id); |
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|
1023 s.BindInt(1, tag.GetGroup()); |
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|
1024 s.BindInt(2, tag.GetElement()); |
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|
1025 s.BindString(3, value); |
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|
1026 s.Run(); |
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|
1027 } |
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1028 |
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1029 |
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1030 virtual void SetMetadata(int64_t id, |
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1031 MetadataType type, |
4623
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|
1032 const std::string& value, |
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1033 int64_t revision) ORTHANC_OVERRIDE |
4591
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|
1034 { |
4623
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|
1035 // TODO - REVISIONS |
5090
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1036 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata (id, type, value) VALUES(?, ?, ?)"); |
4591
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|
1037 s.BindInt64(0, id); |
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|
1038 s.BindInt(1, type); |
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|
1039 s.BindString(2, value); |
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1040 s.Run(); |
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1041 } |
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1042 |
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1043 |
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|
1044 virtual void SetResourcesContent(const Orthanc::ResourcesContent& content) ORTHANC_OVERRIDE |
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|
1045 { |
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diff
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|
1046 ISetResourcesContent::Apply(*this, content); |
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|
1047 } |
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|
1048 |
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1049 |
4592 | 1050 // From the "ICreateInstance" interface |
4591
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1051 virtual void TagMostRecentPatient(int64_t patient) ORTHANC_OVERRIDE |
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|
1052 { |
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|
1053 { |
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diff
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|
1054 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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|
1055 "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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diff
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|
1056 s.BindInt64(0, patient); |
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|
1057 s.Run(); |
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|
1058 |
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|
1059 assert(db_.GetLastChangeCount() == 0 || |
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|
1060 db_.GetLastChangeCount() == 1); |
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|
1061 |
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|
1062 if (db_.GetLastChangeCount() == 0) |
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|
1063 { |
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diff
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|
1064 // The patient was protected, there was nothing to delete from the recycling order |
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|
1065 return; |
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|
1066 } |
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diff
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|
1067 } |
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|
1068 |
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|
1069 { |
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changeset
|
1070 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
5090
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Alain Mazy <am@osimis.io>
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|
1071 "INSERT INTO PatientRecyclingOrder (seq, patientId) VALUES(NULL, ?)"); |
4591
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|
1072 s.BindInt64(0, patient); |
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changeset
|
1073 s.Run(); |
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|
1074 } |
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|
1075 } |
5220
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diff
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|
1076 |
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|
1077 |
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|
1078 virtual void AddLabel(int64_t resource, |
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|
1079 const std::string& label) ORTHANC_OVERRIDE |
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1080 { |
5221
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|
1081 if (label.empty()) |
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|
1082 { |
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|
1083 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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diff
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|
1084 } |
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diff
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|
1085 else |
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|
1086 { |
5256 | 1087 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR IGNORE INTO Labels (id, label) VALUES(?, ?)"); |
5221
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diff
changeset
|
1088 s.BindInt64(0, resource); |
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diff
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|
1089 s.BindString(1, label); |
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|
1090 s.Run(); |
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|
1091 } |
5220
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|
1092 } |
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diff
changeset
|
1093 |
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changeset
|
1094 |
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changeset
|
1095 virtual void RemoveLabel(int64_t resource, |
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|
1096 const std::string& label) ORTHANC_OVERRIDE |
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1097 { |
5221
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1098 if (label.empty()) |
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|
1099 { |
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1100 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1101 } |
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|
1102 else |
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|
1103 { |
5256 | 1104 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Labels WHERE id=? AND label=?"); |
5221
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changeset
|
1105 s.BindInt64(0, resource); |
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|
1106 s.BindString(1, label); |
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|
1107 s.Run(); |
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1108 } |
5220
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|
1109 } |
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changeset
|
1110 |
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|
1111 |
5221
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|
1112 virtual void ListLabels(std::set<std::string>& target, |
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|
1113 int64_t resource) ORTHANC_OVERRIDE |
5220
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|
1114 { |
5221
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|
1115 target.clear(); |
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|
1116 |
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|
1117 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
5256 | 1118 "SELECT label FROM Labels WHERE id=?"); |
5221
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|
1119 s.BindInt64(0, resource); |
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|
1120 |
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1121 while (s.Step()) |
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|
1122 { |
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|
1123 target.insert(s.ColumnString(0)); |
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|
1124 } |
5220
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|
1125 } |
5249
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diff
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|
1126 |
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diff
changeset
|
1127 |
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diff
changeset
|
1128 virtual void ListAllLabels(std::set<std::string>& target) ORTHANC_OVERRIDE |
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|
1129 { |
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changeset
|
1130 target.clear(); |
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|
1131 |
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1132 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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1133 "SELECT DISTINCT label FROM Labels"); |
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1134 |
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1135 while (s.Step()) |
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1136 { |
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1137 target.insert(s.ColumnString(0)); |
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1138 } |
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1139 } |
4591
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1140 }; |
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1141 |
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1142 |
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1143 class SQLiteDatabaseWrapper::SignalFileDeleted : public SQLite::IScalarFunction |
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1144 { |
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1145 private: |
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1146 SQLiteDatabaseWrapper& sqlite_; |
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1147 |
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1148 public: |
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1149 SignalFileDeleted(SQLiteDatabaseWrapper& sqlite) : |
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1150 sqlite_(sqlite) |
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1151 { |
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1152 } |
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1153 |
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1154 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1155 { |
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1156 return "SignalFileDeleted"; |
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1157 } |
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1158 |
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1159 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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1160 { |
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1161 return 7; |
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1162 } |
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1163 |
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1164 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1165 { |
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1166 if (sqlite_.activeTransaction_ != NULL) |
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1167 { |
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1168 std::string uncompressedMD5, compressedMD5; |
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1169 |
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1170 if (!context.IsNullValue(5)) |
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1171 { |
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1172 uncompressedMD5 = context.GetStringValue(5); |
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1173 } |
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1174 |
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1175 if (!context.IsNullValue(6)) |
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1176 { |
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1177 compressedMD5 = context.GetStringValue(6); |
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1178 } |
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1179 |
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1180 FileInfo info(context.GetStringValue(0), |
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1181 static_cast<FileContentType>(context.GetIntValue(1)), |
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1182 static_cast<uint64_t>(context.GetInt64Value(2)), |
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1183 uncompressedMD5, |
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1184 static_cast<CompressionType>(context.GetIntValue(3)), |
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1185 static_cast<uint64_t>(context.GetInt64Value(4)), |
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1186 compressedMD5); |
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1187 |
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1188 sqlite_.activeTransaction_->GetListener().SignalAttachmentDeleted(info); |
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1189 } |
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1190 } |
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1191 }; |
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1192 |
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1193 |
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1194 class SQLiteDatabaseWrapper::SignalResourceDeleted : public SQLite::IScalarFunction |
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1195 { |
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1196 private: |
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1197 SQLiteDatabaseWrapper& sqlite_; |
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1198 |
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1199 public: |
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1200 SignalResourceDeleted(SQLiteDatabaseWrapper& sqlite) : |
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1201 sqlite_(sqlite) |
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1202 { |
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1203 } |
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1204 |
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1205 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1206 { |
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1207 return "SignalResourceDeleted"; |
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1208 } |
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1209 |
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1210 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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1211 { |
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1212 return 2; |
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1213 } |
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1214 |
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1215 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1216 { |
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1217 if (sqlite_.activeTransaction_ != NULL) |
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1218 { |
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1219 sqlite_.activeTransaction_->GetListener(). |
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1220 SignalResourceDeleted(static_cast<ResourceType>(context.GetIntValue(1)), |
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1221 context.GetStringValue(0)); |
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1222 } |
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1223 } |
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1224 }; |
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1225 |
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1226 |
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1227 class SQLiteDatabaseWrapper::ReadWriteTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1228 { |
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1229 private: |
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1230 SQLiteDatabaseWrapper& that_; |
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1231 std::unique_ptr<SQLite::Transaction> transaction_; |
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1232 int64_t initialDiskSize_; |
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1233 |
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1234 public: |
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1235 ReadWriteTransaction(SQLiteDatabaseWrapper& that, |
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1236 IDatabaseListener& listener) : |
4594
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1237 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_), |
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1238 that_(that), |
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1239 transaction_(new SQLite::Transaction(that_.db_)) |
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1240 { |
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1241 if (that_.activeTransaction_ != NULL) |
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1242 { |
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1243 throw OrthancException(ErrorCode_InternalError); |
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1244 } |
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1245 |
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1246 that_.activeTransaction_ = this; |
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1247 |
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1248 #if defined(NDEBUG) |
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1249 // Release mode |
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1250 initialDiskSize_ = 0; |
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1251 #else |
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1252 // Debug mode |
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1253 initialDiskSize_ = static_cast<int64_t>(GetTotalCompressedSize()); |
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1254 #endif |
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1255 } |
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1256 |
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1257 virtual ~ReadWriteTransaction() |
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1258 { |
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1259 assert(that_.activeTransaction_ != NULL); |
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1260 that_.activeTransaction_ = NULL; |
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1261 } |
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1262 |
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1263 void Begin() |
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1264 { |
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1265 transaction_->Begin(); |
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1266 } |
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1267 |
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1268 virtual void Rollback() ORTHANC_OVERRIDE |
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1269 { |
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1270 transaction_->Rollback(); |
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1271 } |
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1272 |
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1273 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1274 { |
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1275 transaction_->Commit(); |
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1276 |
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1277 assert(initialDiskSize_ + fileSizeDelta >= 0 && |
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1278 initialDiskSize_ + fileSizeDelta == static_cast<int64_t>(GetTotalCompressedSize())); |
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1279 } |
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1280 }; |
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1281 |
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1282 |
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1283 class SQLiteDatabaseWrapper::ReadOnlyTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1284 { |
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1285 private: |
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1286 SQLiteDatabaseWrapper& that_; |
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1287 |
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1288 public: |
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1289 ReadOnlyTransaction(SQLiteDatabaseWrapper& that, |
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1290 IDatabaseListener& listener) : |
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1291 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_), |
4591
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1292 that_(that) |
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1293 { |
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1294 if (that_.activeTransaction_ != NULL) |
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1295 { |
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1296 throw OrthancException(ErrorCode_InternalError); |
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1297 } |
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1298 |
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1299 that_.activeTransaction_ = this; |
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1300 } |
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1301 |
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1302 virtual ~ReadOnlyTransaction() |
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1303 { |
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1304 assert(that_.activeTransaction_ != NULL); |
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1305 that_.activeTransaction_ = NULL; |
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1306 } |
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1307 |
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1308 virtual void Rollback() ORTHANC_OVERRIDE |
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1309 { |
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1310 } |
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1311 |
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1312 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1313 { |
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1314 if (fileSizeDelta != 0) |
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1315 { |
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1316 throw OrthancException(ErrorCode_InternalError); |
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1317 } |
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1318 } |
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1319 }; |
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1320 |
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1321 |
3017
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1322 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper(const std::string& path) : |
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1323 activeTransaction_(NULL), |
1847 | 1324 signalRemainingAncestor_(NULL), |
1325 version_(0) | |
183 | 1326 { |
1327 db_.Open(path); | |
1328 } | |
1329 | |
2773
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1330 |
3017
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1331 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper() : |
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1332 activeTransaction_(NULL), |
1847 | 1333 signalRemainingAncestor_(NULL), |
1334 version_(0) | |
183 | 1335 { |
1336 db_.OpenInMemory(); | |
1337 } | |
1338 | |
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1339 SQLiteDatabaseWrapper::~SQLiteDatabaseWrapper() |
3116 | 1340 { |
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1341 if (activeTransaction_ != NULL) |
3116 | 1342 { |
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1343 LOG(ERROR) << "A SQLite transaction is still active in the SQLiteDatabaseWrapper destructor: Expect a crash"; |
3116 | 1344 } |
1345 } | |
1346 | |
1347 | |
3017
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1348 void SQLiteDatabaseWrapper::Open() |
183 | 1349 { |
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1350 { |
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1351 boost::mutex::scoped_lock lock(mutex_); |
1717
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SetIdentifierTagInternal
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1352 |
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1353 if (signalRemainingAncestor_ != NULL) |
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1354 { |
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1355 throw OrthancException(ErrorCode_BadSequenceOfCalls); // Cannot open twice |
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1356 } |
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1357 |
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1358 signalRemainingAncestor_ = dynamic_cast<SignalRemainingAncestor*>(db_.Register(new SignalRemainingAncestor)); |
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1359 db_.Register(new SignalFileDeleted(*this)); |
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1360 db_.Register(new SignalResourceDeleted(*this)); |
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1361 |
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1362 db_.Execute("PRAGMA ENCODING=\"UTF-8\";"); |
374 | 1363 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1364 // Performance tuning of SQLite with PRAGMAs |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1365 // http://www.sqlite.org/pragma.html |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1366 db_.Execute("PRAGMA SYNCHRONOUS=NORMAL;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
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4592
diff
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|
1367 db_.Execute("PRAGMA JOURNAL_MODE=WAL;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
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|
1368 db_.Execute("PRAGMA LOCKING_MODE=EXCLUSIVE;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1369 db_.Execute("PRAGMA WAL_AUTOCHECKPOINT=1000;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1370 //db_.Execute("PRAGMA TEMP_STORE=memory"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1371 |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1372 // Make "LIKE" case-sensitive in SQLite |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1373 db_.Execute("PRAGMA case_sensitive_like = true;"); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1374 } |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1375 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1376 VoidDatabaseListener listener; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
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|
1377 |
183 | 1378 { |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1379 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadOnly, listener)); |
1239 | 1380 |
3116 | 1381 if (!db_.DoesTableExist("GlobalProperties")) |
3018
e3b5c07146a3
speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3017
diff
changeset
|
1382 { |
3116 | 1383 LOG(INFO) << "Creating the database"; |
3018
e3b5c07146a3
speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3017
diff
changeset
|
1384 std::string query; |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1385 ServerResources::GetFileResource(query, ServerResources::PREPARE_DATABASE); |
3018
e3b5c07146a3
speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3017
diff
changeset
|
1386 db_.Execute(query); |
e3b5c07146a3
speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3017
diff
changeset
|
1387 } |
3116 | 1388 |
1389 // Check the version of the database | |
1390 std::string tmp; | |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
1391 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion, true /* unused in SQLite */)) |
3116 | 1392 { |
1393 tmp = "Unknown"; | |
1394 } | |
1395 | |
1396 bool ok = false; | |
1397 try | |
1398 { | |
1399 LOG(INFO) << "Version of the Orthanc database: " << tmp; | |
1400 version_ = boost::lexical_cast<unsigned int>(tmp); | |
1401 ok = true; | |
1402 } | |
1403 catch (boost::bad_lexical_cast&) | |
1404 { | |
1405 } | |
1406 | |
1407 if (!ok) | |
1408 { | |
1409 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion, | |
1410 "Incompatible version of the Orthanc database: " + tmp); | |
1411 } | |
1412 | |
1413 if (version_ == 6) | |
1414 { | |
5221
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1415 // New in Orthanc 1.5.1 |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
1416 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast, true /* unused in SQLite */) || |
3116 | 1417 tmp != "1") |
1418 { | |
1419 LOG(INFO) << "Installing the SQLite triggers to track the size of the attachments"; | |
1420 std::string query; | |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1421 ServerResources::GetFileResource(query, ServerResources::INSTALL_TRACK_ATTACHMENTS_SIZE); |
3116 | 1422 db_.Execute(query); |
1423 } | |
5221
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1424 |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1425 // New in Orthanc 1.12.0 |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1426 if (!db_.DoesTableExist("Labels")) |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1427 { |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1428 LOG(INFO) << "Installing the \"Labels\" table"; |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1429 std::string query; |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1430 ServerResources::GetFileResource(query, ServerResources::INSTALL_LABELS_TABLE); |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1431 db_.Execute(query); |
d0f7c742d397
started implementation of labels
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5220
diff
changeset
|
1432 } |
3116 | 1433 } |
1434 | |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1435 transaction->Commit(0); |
3018
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speeding up the computation of the size of the attachments in SQLite
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1436 } |
1247 | 1437 } |
1438 | |
1615
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Primitives to upgrade the database version in plugins
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|
1439 |
4594
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removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1440 void SQLiteDatabaseWrapper::Close() |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1441 { |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1442 boost::mutex::scoped_lock lock(mutex_); |
5057
e6f26be401fa
SQLite: close and delete WAL and SHM files on exit (contribution from Sebastian Höffner)
Alain Mazy <am@osimis.io>
parents:
4892
diff
changeset
|
1443 // close and delete the WAL when exiting properly -> the DB is stored in a single file (no more -wal and -shm files) |
e6f26be401fa
SQLite: close and delete WAL and SHM files on exit (contribution from Sebastian Höffner)
Alain Mazy <am@osimis.io>
parents:
4892
diff
changeset
|
1444 db_.Execute("PRAGMA JOURNAL_MODE=DELETE;"); |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1445 db_.Close(); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1446 } |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1447 |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1448 |
1615
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Primitives to upgrade the database version in plugins
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parents:
1509
diff
changeset
|
1449 static void ExecuteUpgradeScript(SQLite::Connection& db, |
4031
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1450 ServerResources::FileResourceId script) |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
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diff
changeset
|
1451 { |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1452 std::string upgrade; |
4031
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ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1453 ServerResources::GetFileResource(upgrade, script); |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1454 db.BeginTransaction(); |
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1455 db.Execute(upgrade); |
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Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
1456 db.CommitTransaction(); |
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Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1457 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1458 |
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Primitives to upgrade the database version in plugins
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diff
changeset
|
1459 |
3017
517fc4767ae0
renamed class DatabaseWrapper as SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2955
diff
changeset
|
1460 void SQLiteDatabaseWrapper::Upgrade(unsigned int targetVersion, |
517fc4767ae0
renamed class DatabaseWrapper as SQLiteDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2955
diff
changeset
|
1461 IStorageArea& storageArea) |
1615
c40fe92a68e7
Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1462 { |
4594
d494b4f1103e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1463 boost::mutex::scoped_lock lock(mutex_); |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1464 |
1664
0c58f189782d
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parents:
1615
diff
changeset
|
1465 if (targetVersion != 6) |
1615
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Primitives to upgrade the database version in plugins
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diff
changeset
|
1466 { |
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Primitives to upgrade the database version in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1467 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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Primitives to upgrade the database version in plugins
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diff
changeset
|
1468 } |
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|
1469 |
1664
0c58f189782d
prepare migration to db v6
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parents:
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diff
changeset
|
1470 // This version of Orthanc is only compatible with versions 3, 4, |
0c58f189782d
prepare migration to db v6
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diff
changeset
|
1471 // 5 and 6 of the DB schema |
1615
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diff
changeset
|
1472 if (version_ != 3 && |
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diff
changeset
|
1473 version_ != 4 && |
1664
0c58f189782d
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parents:
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diff
changeset
|
1474 version_ != 5 && |
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diff
changeset
|
1475 version_ != 6) |
1615
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changeset
|
1476 { |
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diff
changeset
|
1477 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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Primitives to upgrade the database version in plugins
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diff
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|
1478 } |
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diff
changeset
|
1479 |
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|
1480 if (version_ == 3) |
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changeset
|
1481 { |
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Primitives to upgrade the database version in plugins
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parents:
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diff
changeset
|
1482 LOG(WARNING) << "Upgrading database version from 3 to 4"; |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4030
diff
changeset
|
1483 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_3_TO_4); |
1615
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Primitives to upgrade the database version in plugins
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changeset
|
1484 version_ = 4; |
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|
1485 } |
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1486 |
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|
1487 if (version_ == 4) |
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1488 { |
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diff
changeset
|
1489 LOG(WARNING) << "Upgrading database version from 4 to 5"; |
4031
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diff
changeset
|
1490 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_4_TO_5); |
1615
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changeset
|
1491 version_ = 5; |
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diff
changeset
|
1492 } |
1664
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diff
changeset
|
1493 |
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diff
changeset
|
1494 if (version_ == 5) |
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changeset
|
1495 { |
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diff
changeset
|
1496 LOG(WARNING) << "Upgrading database version from 5 to 6"; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1665
diff
changeset
|
1497 // No change in the DB schema, the step from version 5 to 6 only |
1710 | 1498 // consists in reconstructing the main DICOM tags information |
1499 // (as more tags got included). | |
4591
ff8170d17d90
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diff
changeset
|
1500 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
1501 VoidDatabaseListener listener; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
1502 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
1503 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1504 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadWrite, listener)); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
1505 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Patient); |
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diff
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|
1506 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Study); |
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diff
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|
1507 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Series); |
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diff
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|
1508 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Instance); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
1509 db_.Execute("UPDATE GlobalProperties SET value=\"6\" WHERE property=" + |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
1510 boost::lexical_cast<std::string>(GlobalProperty_DatabaseSchemaVersion) + ";"); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
1511 transaction->Commit(0); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
1512 } |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
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|
1513 |
1664
0c58f189782d
prepare migration to db v6
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1615
diff
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|
1514 version_ = 6; |
1729 | 1515 } |
1615
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diff
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|
1516 } |
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diff
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|
1517 |
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Primitives to upgrade the database version in plugins
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diff
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|
1518 |
4589
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diff
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|
1519 IDatabaseWrapper::ITransaction* SQLiteDatabaseWrapper::StartTransaction(TransactionType type, |
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attaching the listener to transactions in IDatabaseWrapper
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diff
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|
1520 IDatabaseListener& listener) |
4570
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diff
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|
1521 { |
648defffc8cc
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diff
changeset
|
1522 switch (type) |
648defffc8cc
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diff
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|
1523 { |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1524 case TransactionType_ReadOnly: |
4589
bec74e29f86b
attaching the listener to transactions in IDatabaseWrapper
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1525 return new ReadOnlyTransaction(*this, listener); // This is a no-op transaction in SQLite (thanks to mutex) |
4570
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new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1526 |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1527 case TransactionType_ReadWrite: |
648defffc8cc
new enum: TransactionType
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diff
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|
1528 { |
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new enum: TransactionType
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diff
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|
1529 std::unique_ptr<ReadWriteTransaction> transaction; |
4589
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attaching the listener to transactions in IDatabaseWrapper
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diff
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|
1530 transaction.reset(new ReadWriteTransaction(*this, listener)); |
4570
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new enum: TransactionType
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diff
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|
1531 transaction->Begin(); |
648defffc8cc
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1532 return transaction.release(); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1533 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1534 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1535 default: |
648defffc8cc
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1536 throw OrthancException(ErrorCode_InternalError); |
648defffc8cc
new enum: TransactionType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
1537 } |
3019
8336204d95dc
refactoring computation of disk size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3018
diff
changeset
|
1538 } |
8336204d95dc
refactoring computation of disk size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
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3018
diff
changeset
|
1539 |
4591
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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diff
changeset
|
1540 |
4594
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1541 void SQLiteDatabaseWrapper::FlushToDisk() |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1542 { |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1543 boost::mutex::scoped_lock lock(mutex_); |
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removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1544 db_.FlushToDisk(); |
d494b4f1103e
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1545 } |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1546 |
d494b4f1103e
removed the global database mutex from ServerIndex and StatelessDatabaseOperations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4592
diff
changeset
|
1547 |
4591
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moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1548 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::CreateResource(const std::string& publicId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
1549 ResourceType type) |
2773
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1550 { |
5090
cc1a8b3ff319
Made the default SQLite DB more robust wrt future updates like adding new columns in DB.
Alain Mazy <am@osimis.io>
parents:
5057
diff
changeset
|
1551 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources (internalId, resourceType, publicId, parentId) VALUES(NULL, ?, ?, NULL)"); |
2773
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moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1552 s.BindInt(0, type); |
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moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1553 s.BindString(1, publicId); |
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moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1554 s.Run(); |
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moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1555 return db_.GetLastInsertRowId(); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1556 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1557 |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1558 |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1559 void SQLiteDatabaseWrapper::UnitTestsTransaction::AttachChild(int64_t parent, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1560 int64_t child) |
2773
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1561 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1562 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
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moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1563 s.BindInt64(0, parent); |
bb63068844ae
moving DatabaseWrapperBase into graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1564 s.BindInt64(1, child); |
bb63068844ae
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1565 s.Run(); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1566 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1567 |
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moving DatabaseWrapperBase into graveyard
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diff
changeset
|
1568 |
4591
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1569 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetIdentifierTag(int64_t id, |
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diff
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|
1570 const DicomTag& tag, |
ff8170d17d90
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diff
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|
1571 const std::string& value) |
2773
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diff
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|
1572 { |
5090
cc1a8b3ff319
Made the default SQLite DB more robust wrt future updates like adding new columns in DB.
Alain Mazy <am@osimis.io>
parents:
5057
diff
changeset
|
1573 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
2773
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moving DatabaseWrapperBase into graveyard
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diff
changeset
|
1574 s.BindInt64(0, id); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1575 s.BindInt(1, tag.GetGroup()); |
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diff
changeset
|
1576 s.BindInt(2, tag.GetElement()); |
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moving DatabaseWrapperBase into graveyard
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|
1577 s.BindString(3, value); |
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diff
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|
1578 s.Run(); |
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diff
changeset
|
1579 } |
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diff
changeset
|
1580 |
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diff
changeset
|
1581 |
4591
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changeset
|
1582 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetMainDicomTag(int64_t id, |
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|
1583 const DicomTag& tag, |
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|
1584 const std::string& value) |
2773
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|
1585 { |
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Alain Mazy <am@osimis.io>
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diff
changeset
|
1586 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags (id, tagGroup, tagElement, value) VALUES(?, ?, ?, ?)"); |
2773
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changeset
|
1587 s.BindInt64(0, id); |
4591
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changeset
|
1588 s.BindInt(1, tag.GetGroup()); |
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changeset
|
1589 s.BindInt(2, tag.GetElement()); |
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|
1590 s.BindString(3, value); |
2773
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|
1591 s.Run(); |
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|
1592 } |
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changeset
|
1593 |
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changeset
|
1594 |
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|
1595 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::GetTableRecordCount(const std::string& table) |
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|
1596 { |
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changeset
|
1597 /** |
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|
1598 * "Generally one cannot use SQL parameters/placeholders for |
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|
1599 * database identifiers (tables, columns, views, schemas, etc.) or |
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|
1600 * database functions (e.g., CURRENT_DATE), but instead only for |
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|
1601 * binding literal values." => To avoid any SQL injection, we |
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|
1602 * check that the "table" parameter has only alphabetic |
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|
1603 * characters. |
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|
1604 * https://stackoverflow.com/a/1274764/881731 |
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|
1605 **/ |
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|
1606 for (size_t i = 0; i < table.size(); i++) |
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|
1607 { |
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|
1608 if (!isalpha(table[i])) |
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|
1609 { |
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changeset
|
1610 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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|
1611 } |
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|
1612 } |
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changeset
|
1613 |
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1614 // Don't use "SQLITE_FROM_HERE", otherwise "table" would be cached |
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1615 SQLite::Statement s(db_, "SELECT COUNT(*) FROM " + table); |
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1616 |
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1617 if (s.Step()) |
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1618 { |
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1619 int64_t c = s.ColumnInt(0); |
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1620 assert(!s.Step()); |
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1621 return c; |
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1622 } |
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1623 else |
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1624 { |
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1625 throw OrthancException(ErrorCode_InternalError); |
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1626 } |
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1627 } |
3121 | 1628 |
1629 | |
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1630 bool SQLiteDatabaseWrapper::UnitTestsTransaction::GetParentPublicId(std::string& target, |
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1631 int64_t id) |
3121 | 1632 { |
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1633 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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1634 "WHERE a.internalId = b.parentId AND b.internalId = ?"); |
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1635 s.BindInt64(0, id); |
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1636 |
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1637 if (s.Step()) |
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1638 { |
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1639 target = s.ColumnString(0); |
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1640 return true; |
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1641 } |
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1642 else |
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1643 { |
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1644 return false; |
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1645 } |
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1646 } |
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1647 |
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1648 |
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1649 void SQLiteDatabaseWrapper::UnitTestsTransaction::GetChildren(std::list<std::string>& childrenPublicIds, |
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1650 int64_t id) |
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1651 { |
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1652 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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1653 s.BindInt64(0, id); |
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1654 |
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1655 childrenPublicIds.clear(); |
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1656 while (s.Step()) |
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1657 { |
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1658 childrenPublicIds.push_back(s.ColumnString(0)); |
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1659 } |
3121 | 1660 } |
183 | 1661 } |